id category name description xref provided_by synonym 0000052 0000061 0000114 0000178 0000184 0000231 0000233 0000234 0000386 0000399 0000424 0000425 0000426 0000589 0000905 0006012 0037192 0100001 9000002 :http://attempto.ifi.uzh.ch/ace_lexicon#TV_pl :http://attempto.ifi.uzh.ch/ace_lexicon#TV_sg :http://attempto.ifi.uzh.ch/ace_lexicon#TV_vbg :http://geneontology.org/formats/oboInOwl#created_by :http://purl.obolibrary.org/obo/chebi/charge :http://purl.obolibrary.org/obo/chebi/formula :http://purl.obolibrary.org/obo/chebi/inchi :http://purl.obolibrary.org/obo/chebi/inchikey :http://purl.obolibrary.org/obo/chebi/mass :http://purl.obolibrary.org/obo/chebi/monoisotopicmass :http://purl.obolibrary.org/obo/chebi/smiles :http://purl.org/spar/cito/citesAsAuthority :http://usefulinc.com/ns/doap#revision :http://www.ebi.ac.uk/cellline/definition :http://www.ebi.ac.uk/cellline/definition_editor :http://www.ebi.ac.uk/efo/alternative_term :http://www.ebi.ac.uk/efo/definition :http://www.ebi.ac.uk/efo/definition_citation :http://www.ebi.ac.uk/efo/definition_editor :http://www.ebi.ac.uk/efo/example_of_usage :http://www.w3.org/2003/06/sw-vocab-status/ns#term_status :https://w3id.org/biodatamodels/gff/end :https://w3id.org/biodatamodels/gff/start :ttp://www.geneontology.org/formats/oboInOwl#created_by BFO_CLIF_specification_label BFO_OWL_specification_label Date Uri alt_id alternative_term author cl#created_by close_match comment consider contributor core#provenance_notes created_by creation_date creator curator_note definition_source depicted_by deprecated editor_note editor_preferred_term elucidation example_of_usage genome_build has_alternative_id has_associated_axiom(fol) has_associated_axiom(nl) has_o_b_o_namespace has_synonym hsapdv#end_dpf hsapdv#end_mpb hsapdv#end_ypb hsapdv#start_dpf hsapdv#start_mpb hsapdv#start_ypb imported_from in_subset is_a_defining_property_chain_axiom is_class_level is_cyclic is_defined_by is_metadata_tag is_transitive issued logical_macro_assertion_on_an_annotation_property modified mondo#excluded_synonym mondo#pathogenesis mondo#related note page present_in_taxon prior_version see_also shorthand source subset term_editor type u_b_p_r_o_p_0000001 u_b_p_r_o_p_0000002 u_b_p_r_o_p_0000003 u_b_p_r_o_p_0000004 u_b_p_r_o_p_0000005 u_b_p_r_o_p_0000006 u_b_p_r_o_p_0000007 u_b_p_r_o_p_0000008 u_b_p_r_o_p_0000009 u_b_p_r_o_p_0000010 u_b_p_r_o_p_0000011 u_b_p_r_o_p_0000012 u_b_p_r_o_p_0000013 u_b_p_r_o_p_0000014 u_b_p_r_o_p_0000015 u_b_p_r_o_p_0000103 u_b_p_r_o_p_0000104 u_b_p_r_o_p_0000105 u_b_p_r_o_p_0000106 u_b_p_r_o_p_0000107 u_b_p_r_o_p_0000108 u_b_p_r_o_p_0000111 u_b_p_r_o_p_0000112 faldo:BagOfRegions biolink:NamedThing Bag of regions monarch-merged.owl Used to describe a location that consists of a number of Regions but where the order is not known. e.g. the oddly named order() keyword in a INSDC file. owl:Class faldo:CollectionOfRegions biolink:NamedThing Collection of regions monarch-merged.owl Sometimes a location of a feature is defined by a collection of regions e.g. join() and order() in INSDC records. One should always try to model the semantics more accurately than this, these are fallback options to encode legacy data. owl:Class faldo:ListOfRegions biolink:NamedThing List of regions monarch-merged.owl As an ordered list of regions (but the list might not be complete).|Should be used when the location of a region is defined by an ordered list of Regions. However, try to avoid using these types in favor of using more explicit semantics about why the order is important. owl:Class rdf:Bag biolink:NamedThing monarch-merged.owl owl:Class faldo:BothStrandsPosition biolink:NamedThing Both strands position monarch-merged.owl The 'both strands position' indicates a region that is best described as being on 'both' strands of a double-stranded sequence, rather than one or the other. owl:Class faldo:StrandedPosition biolink:NamedThing Stranded position monarch-merged.owl Part of the coordinate system denoting on which strand the feature can be found. If you do not yet know which stand the feature is on, you should tag the position with just this class. If you know more you should use one of the subclasses. This means a region described with a '.' in GFF3. A GFF3 unstranded position does not have this type in FALDO -- those are just a 'position'. owl:Class faldo:ForwardStrandPosition biolink:NamedThing Forward/positive strand position monarch-merged.owl The position is on the forward (positive, 5' to 3') strand. Shown as a '+' in GFF3 and GTF. owl:Class faldo:ReverseStrandPosition biolink:NamedThing Negative strand monarch-merged.owl The position is on the reverse (complement, 3' to 5') strand of the sequence. Shown as '-' in GTF and GFF3. owl:Class faldo:C-TerminalPosition biolink:NamedThing C-Terminal position monarch-merged.owl The C-terminus is the end of an amino acid chain (protein or polypeptide), terminated by a free carboxyl group (-COOH). owl:Class faldo:ExactPosition biolink:NamedThing Exact position A position that is exactly known. monarch-merged.owl A position that is exactly known. owl:Class faldo:N-TerminalPosition biolink:NamedThing monarch-merged.owl The position of the starting amino-acid a protein or polypeptide terminated by an amino acid with a free amine group (-NH2). The convention for writing peptide sequences is to put the N-terminus on the left and write the sequence from N- to C-terminus. Instances of this class are often used when the reference sequence is not complete owl:Class owl:Thing biolink:NamedThing Thing monarch-merged.owl owl:Class faldo:Position biolink:NamedThing Position Superclass for the general concept of a position on a sequence. The sequence is designated with the reference predicate. monarch-merged.owl Superclass for the general concept of a position on a sequence. The sequence is designated with the reference predicate. We place the FALDO:Position class under GENO:genomic location, as it represents a type of genomic location with an extent of 1 (i.e.has the same start and end coordinates - representing a single position as opposed to a location spanning a longer region). FALDO owl:Class faldo:Region biolink:NamedThing Region A region describes a length of sequence with a start position and end position that represents a feature on a sequence, e.g. a gene. monarch-merged.owl A region describes a length of sequence with a start position and end position that represents a feature on a sequence, e.g. a gene. From what I can tell, feature instances in data whose position is to be defined using FALDO are always mapped to a Region, and then the position of this Region is defined according to its location within some larger reference sequence. The exception may be feature instances that are explicitly part of the reference sequence on which its location is being defined (such that no 'mapping' to a reference is required). This suggests that, conceptually, we can think of a FALDO:Region as a subregion of a reference sequence that is mapped to from a feature of interest, in order to define its position with respect to that reference sequence. owl:Class BFO:0000001 biolink:NamedThing entity monarch-merged.owl Entity entity BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81|Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf entity An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001]) your body mass index|Julius Caesar|Verdi’s Requiem|the Second World War owl:Class NCBITaxon:1 biolink:NamedThing root monarch-merged.owl all GC_ID:1 ncbi_taxonomy owl:Class foaf:OnlineAccount biolink:NamedThing Online Account monarch-merged.owl testing An online account. owl:Class faldo:FuzzyPosition biolink:NamedThing Fuzzy position monarch-merged.owl A position that lacks exact data. owl:Class faldo:InBetweenPosition biolink:NamedThing In between positions monarch-merged.owl This indicates that a feature is between two other positions that are both known exactly and that are next to each other. An example is a restriction enzyme cutting site. The cut is after one position and before the other position (hence, in between). owl:Class faldo:InRangePosition biolink:NamedThing Indeterminate position within a range monarch-merged.owl Use when you have an idea of the range in which you can find the position, but you cannot be sure about the exact position. owl:Class faldo:OneOfPosition biolink:NamedThing One of positions monarch-merged.owl The position is known to be one of the more detailed positions listed by the location predicate. owl:Class rdf:Seq biolink:NamedThing monarch-merged.owl owl:Class GENO:0000902 biolink:NamedThing genomic feature location The location of a sequence feature in a genome, defined by its start and end position on some reference genomic coordinate system monarch-merged.owl genomic locus|genomic location VMC:Location 1. A genomic location (aka locus) is defined by its begin and end coordinates on a reference genome, independent of a particular sequence that may reside there. In GENO, we say that a genomic location is occupied_by a 'sequence feature' - where the identity of this feature depends on both it sequence, and its location in the genome (i.e. the locus it occupies). For example, the 'ATG' sequence beginning the ORF of the human SHH gene shares the *same sequence* as the 'ATG' beginning the ORF of the human AKT gene. But these are *distinct sequence features* because they occupy different genomic locations. 2. A given genomic location (e.g. the human SHH gene locus) may be occupied by different alleles (e.g. different alleles of the SHH gene). Within the genome of a single diploid organism, there is potential for two alleles to exist at such a locus (i.e. two different versions of the SHH gene). And across genomes of all members of a species, many more alleles of the SHH gene may exist and occupy this same locus. 3. The notion of a genomic location in the realm of biological sequences is analogous to a BFO:spatiotemporal region in the realm of physical entities. A spatiotemporal region can be occupied_by physical objects, while a genomic location is occupied_by sequence features. Just as a spatiotemporal region is distinct from an object that occupies it, so too a genomic locus is distinct from a sequence feature that occupies it. As a more concrete example, consider the distinction between a street address and the building that occupies it as analogous to the relationship between a genomic location and the feature that resides there. In practice, GENO advocates describing biology at the level of genomic features - i.e. define specific terms for genes as genomic features, and not duplicate representation of the loci where each gene resides. So we might define a class representing the human Shh gene as a 'genomic feature', but not parallel this with a 'human Shh gene locus' class. The utility of the 'genomic locus' class in the ontology is primarily to be clear about the distinction, but we would only use it in modeling data if absolutely needed. For example, we would define an 'HLA gene block' as a subclass of 'genomic feature', and assert that HLA-A, HLA-B, and HLA-C genes are part/subsequences of this HLA gene block (as opposed to modeling this as an 'HLA locus' and asserting that the HLA-A, HLA-B, and HLA-C genes occupy this locus).|In GENO, the notion of a Genomic Location (aka Genomic Locus) plays the same role as that of a FALDO:Region in the design pattern for describing the location of a feature of interest. We define this specific GENO class because the ontological nature of FALDO:Region class is not clear in the context of the BFO and SO-based GENO model. We will work to resolve these questions and ideally converge these concepts in the future. We don't link a Genomic Location to a specific reference sequence because in the FALDO model (which GENO adopts with the exception of swapping GENO:Genomic Locus for FALDO:Region), allows the start and end positions of a region to be defined on separate reference sequences. So while a given Location is conceptually associated with a single reference, in practice it can be pragmatic to define start and stop on different references sequences. owl:Class SO:0000110 biolink:NamedThing sequence_feature An extent of biological sequence.|Any extent of continuous biological sequence. monarch-merged.owl INSDC_note:other|sequence feature|INSDC_note:sequence_feature|INSDC_feature:misc_feature|located sequence feature|located_sequence_feature A sequence feature is an extent of 'located' biological sequence, whose identity is determined by both its inherent sequence (ordering of monomeric units) and its position (start and end coordinates based on alignment with some reference). By contrast, 'biological sequences' are identified and distinguished only by their inehrent sequence, and not their position. Accordingly, the 'ATG' start codon in the coding DNA sequence of the human AKT gene is the same 'sequence' as the 'ATG' start codon in the human SHH gene, but these represent two distinct 'sequence features' in virtue of their different positions in the genome. GENO defines three levels of sequence-related artifacts, which are distinguished by their identity criteria. 1. 'Biological sequence' identity is dependent only on the ordering of units that comprise the sequence. 2. 'Sequence feature' identity is dependent on its sequence and the genomic location of the sequence (this is consistent with the definition of 'sequence feature' in the Sequence Ontology). 3. 'Qualified sequence feature' identity is additionally dependent on some aspect of the physical context of the genetic material in which the feature is concretized. This third criteria is extrinsic to its sequence and its genomic location. For example, the feature's physical concretization being targeted by a gene knockdown reagent in a cell (e.g. the zebrafish Shha gene as targeted by the morpholino 'Shha-MO1'), or its being transiently expressed from a recombinant expression construct (e.g. the human SHH gene as expressed in a mouse Shh knock-out cell line), or its having been epigenetically modified in a way that alters its expression level or pattern (e.g. the human SHH gene with a specific methylation pattern). sequence owl:Class GENO:0000481 biolink:NamedThing genomic feature A sequence feature (continuous extent of biological sequence) that is of genomic origin (i.e. carries sequence from the genome of a cell or organism) monarch-merged.owl 1. A feature being 'of genomic origin' here means only that its sequence has been located to the genome of some organism by alignment with some reference genome. This is because the sequence was originally identified in, or artificially created to replicate, sequence from an organism's genome. 2. The location of a genomic feature is defined by start and end coordinates based on alignment with a reference genome. Genomic features can span any size from a complete chromosome, to a chromosomal band or region, to a gene, to a single base pair or even junction between base pairs (this would be a sequence feature with an extent of zero). 3. As sequence features, instances of genomic features are identified by both their inherent *sequence* and their *position* in a genome - as determined by an alignment with some reference sequence. Accordingly, the 'ATG' start codon in the coding DNA sequence of the human AKT gene and the 'ATG' start codon in the human SHH gene represent two distinct genomic features despite having he same sequence, in virtue of their different positions in the genome. This class was created largely as a modeling convenience to support organizing data for schema definitions. We may consider obsoleting it if it ends up causing confusion or complicating classification of terms in the ontology. owl:Class GENO:0000688 biolink:NamedThing terminus A sequence feature representing the end of a sequence that is bounded only on one side (e.g. at the end of an chromosome or oligonucleotide). monarch-merged.owl owl:Class GENO:0000907 biolink:NamedThing gene product The molecular product resulting from transcription of a single gene (either a protein or RNA molecule) monarch-merged.owl owl:Class SO:0000001 biolink:NamedThing region A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids. monarch-merged.owl sequence sequence owl:Class SO:0000699 biolink:NamedThing junction A sequence_feature with an extent of zero. monarch-merged.owl breakpoint|boundary A junction is a boundary between regions. A boundary has an extent of zero. sequence owl:Class SO:0000704 biolink:NamedThing gene A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions. monarch-merged.owl INSDC_feature:gene http://en.wikipedia.org/wiki/Gene This term is mapped to MGED. Do not obsolete without consulting MGED ontology. A gene may be considered as a unit of inheritance.|A gene is any 'gene allele' that produces a functional transcript (ie one capable of translation into a protein, or independent functioning as an RNA), when encoded in the genome of some cell or virion. Regarding the distinction between a 'gene' and a 'gene allele': Every zebrafish genome contains a 'gene allele' for every zebrafish gene. Many will be 'wild-type' or at least functional gene alleles. But some may be alleles that are mutated or truncated so as to lack functionality. According to current SO criteria defining genes, a 'gene' no longer exists in the case of a non-functional or deleted variant. But the 'gene allele' does exist - and its extent is that of the remaining/altered sequence based on alignment with a reference gene. Even for completely deleted genes, an allele of the gene exists (and here is equivalent to the junction corresponding to the where gene would live based on a reference alignment). sequence owl:Class SO:0000804 biolink:NamedThing engineered_region A region that is engineered. monarch-merged.owl engineered region|engineered sequence|construct construct sequence owl:Class SO:0002072 biolink:NamedThing sequence_comparison A position or feature where two sequences have been compared. monarch-merged.owl INSDC_feature:misc_feature|INSDC_note:sequence_comparison|sequence comparison kareneilbeck 2015-11-23T14:14:32Z sequence owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10001 biolink:NamedThing RGS5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10004 biolink:NamedThing RGS9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10006 biolink:NamedThing RHAG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10012 biolink:NamedThing RHO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10013 biolink:NamedThing GRK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10023 biolink:NamedThing RIT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10024 biolink:NamedThing RLBP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10031 biolink:NamedThing RMRP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10050 biolink:NamedThing RNASEL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10057 biolink:NamedThing RNF13 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10069 biolink:NamedThing RNF6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1012 biolink:NamedThing OPN1SW monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1014 biolink:NamedThing BCR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1020 biolink:NamedThing BCS1L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10250 biolink:NamedThing ROBO2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10254 biolink:NamedThing ROM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10257 biolink:NamedThing ROR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10260 biolink:NamedThing RORC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10263 biolink:NamedThing RP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10274 biolink:NamedThing RP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10288 biolink:NamedThing RP9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10294 biolink:NamedThing RPE65 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10295 biolink:NamedThing RPGR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10297 biolink:NamedThing RPIA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10298 biolink:NamedThing RPL10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:103 biolink:NamedThing CNNM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10301 biolink:NamedThing RPL11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10306 biolink:NamedThing RPL15 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10313 biolink:NamedThing RPL21 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10327 biolink:NamedThing RPL26 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1033 biolink:NamedThing BDNF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10345 biolink:NamedThing RPL35A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10360 biolink:NamedThing RPL5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1037 biolink:NamedThing CFB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10379 biolink:NamedThing MRPL3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10383 biolink:NamedThing RPS10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10387 biolink:NamedThing RPS14 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10397 biolink:NamedThing RPS17 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1040 biolink:NamedThing BFSP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10402 biolink:NamedThing RPS19 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1041 biolink:NamedThing BFSP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10411 biolink:NamedThing RPS24 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10414 biolink:NamedThing RPS26 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10418 biolink:NamedThing RPS28 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10419 biolink:NamedThing RPS29 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10432 biolink:NamedThing RPS6KA3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1044 biolink:NamedThing BGN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10440 biolink:NamedThing RPS7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10457 biolink:NamedThing RS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10468 biolink:NamedThing RTN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10471 biolink:NamedThing RUNX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10472 biolink:NamedThing RUNX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10483 biolink:NamedThing RYR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10484 biolink:NamedThing RYR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:105 biolink:NamedThing CNNM4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10519 biolink:NamedThing SACS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1052 biolink:NamedThing BIN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10521 biolink:NamedThing SAG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10524 biolink:NamedThing SALL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10526 biolink:NamedThing SALL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10535 biolink:NamedThing SAR1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10536 biolink:NamedThing SARDH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10540 biolink:NamedThing SAT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10542 biolink:NamedThing SBF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10545 biolink:NamedThing MSMO1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10547 biolink:NamedThing SC5D monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10583 biolink:NamedThing SCN11A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10585 biolink:NamedThing SCN1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10586 biolink:NamedThing SCN1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10588 biolink:NamedThing SCN2A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10589 biolink:NamedThing SCN2B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1059 biolink:NamedThing BLMH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10591 biolink:NamedThing SCN4A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10592 biolink:NamedThing SCN4B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10593 biolink:NamedThing SCN5A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10596 biolink:NamedThing SCN8A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10597 biolink:NamedThing SCN9A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10599 biolink:NamedThing SCNN1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10600 biolink:NamedThing SCNN1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10602 biolink:NamedThing SCNN1G monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10603 biolink:NamedThing SCO1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10604 biolink:NamedThing SCO2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10606 biolink:NamedThing SCP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10610 biolink:NamedThing CCL11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10618 biolink:NamedThing CCL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1062 biolink:NamedThing BLVRA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10627 biolink:NamedThing CCL3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10628 biolink:NamedThing CCL3L1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10648 biolink:NamedThing AIMP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10660 biolink:NamedThing SDC3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10664 biolink:NamedThing CWC27 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10669 biolink:NamedThing TSHZ1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1067 biolink:NamedThing BMP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10671 biolink:NamedThing SDCCAG8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10672 biolink:NamedThing CXCL12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1068 biolink:NamedThing BMP15 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10680 biolink:NamedThing SDHA monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10718 biolink:NamedThing SELE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10721 biolink:NamedThing SELP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10723 biolink:NamedThing SEMA3A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10727 biolink:NamedThing SEMA3E monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10729 biolink:NamedThing SEMA4A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1076 biolink:NamedThing BMPR1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10768 biolink:NamedThing SF3B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1077 biolink:NamedThing BMPR1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10771 biolink:NamedThing SF3B4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10778 biolink:NamedThing SFRP4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1078 biolink:NamedThing BMPR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10798 biolink:NamedThing SFTPA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10799 biolink:NamedThing SFTPA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10801 biolink:NamedThing SFTPB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10802 biolink:NamedThing SFTPC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10805 biolink:NamedThing SGCA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10806 biolink:NamedThing SGCB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10807 biolink:NamedThing SGCD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10808 biolink:NamedThing SGCE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10809 biolink:NamedThing SGCG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10817 biolink:NamedThing SGPL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10818 biolink:NamedThing SGSH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10820 biolink:NamedThing SH2D1A monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10891 biolink:NamedThing SIX5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10892 biolink:NamedThing SIX6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10896 biolink:NamedThing SKI monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10898 biolink:NamedThing SKIV2L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1090 biolink:NamedThing DST monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10906 biolink:NamedThing SLC10A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10907 biolink:NamedThing SLC11A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10908 biolink:NamedThing SLC11A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10909 biolink:NamedThing SLC40A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10910 biolink:NamedThing SLC12A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10912 biolink:NamedThing SLC12A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10914 biolink:NamedThing SLC12A6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1092 biolink:NamedThing FOXL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10922 biolink:NamedThing SLC16A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10923 biolink:NamedThing SLC16A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1093 biolink:NamedThing BPGM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10933 biolink:NamedThing SLC17A5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10936 biolink:NamedThing SLC18A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10938 biolink:NamedThing SLC19A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10939 biolink:NamedThing SLC1A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10940 biolink:NamedThing SLC1A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10941 biolink:NamedThing SLC1A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10942 biolink:NamedThing SLC1A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10947 biolink:NamedThing SLC20A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10955 biolink:NamedThing SLCO2A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10959 biolink:NamedThing SLCO1B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10961 biolink:NamedThing SLCO1B3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10964 biolink:NamedThing SLC22A18 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10968 biolink:NamedThing SLC22A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10969 biolink:NamedThing SLC22A5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1097 biolink:NamedThing BRAF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10975 biolink:NamedThing SLC24A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10978 biolink:NamedThing SLC24A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10979 biolink:NamedThing SLC25A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10982 biolink:NamedThing SLC25A12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10983 biolink:NamedThing SLC25A13 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10985 biolink:NamedThing SLC25A15 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10989 biolink:NamedThing SLC25A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10990 biolink:NamedThing SLC25A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10993 biolink:NamedThing SLC26A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10994 biolink:NamedThing SLC26A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:10998 biolink:NamedThing SLC27A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1100 biolink:NamedThing BRCA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11005 biolink:NamedThing SLC2A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11006 biolink:NamedThing SLC2A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1101 biolink:NamedThing BRCA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11013 biolink:NamedThing SLC30A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11019 biolink:NamedThing SLC34A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11020 biolink:NamedThing SLC34A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11021 biolink:NamedThing SLC35A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11022 biolink:NamedThing SLC35A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11023 biolink:NamedThing SLC35A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11025 biolink:NamedThing SLC3A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11027 biolink:NamedThing SLC4A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11030 biolink:NamedThing SLC4A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11036 biolink:NamedThing SLC5A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11037 biolink:NamedThing SLC5A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11040 biolink:NamedThing SLC5A5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11042 biolink:NamedThing SLC6A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11048 biolink:NamedThing SLC6A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11049 biolink:NamedThing SLC6A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11050 biolink:NamedThing SLC6A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11051 biolink:NamedThing SLC6A5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11055 biolink:NamedThing SLC6A8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11056 biolink:NamedThing SLC6A9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11065 biolink:NamedThing SLC7A7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11067 biolink:NamedThing SLC7A9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11071 biolink:NamedThing SLC9A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11073 biolink:NamedThing SLC9A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11075 biolink:NamedThing SLC9A3R1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11079 biolink:NamedThing SLC9A6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11094 biolink:NamedThing SNAI2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11098 biolink:NamedThing SMARCA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11100 biolink:NamedThing SMARCA4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11102 biolink:NamedThing SMARCAL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11103 biolink:NamedThing SMARCB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11109 biolink:NamedThing SMARCE1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11110 biolink:NamedThing ARID1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11111 biolink:NamedThing SMC1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11114 biolink:NamedThing KDM5C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11115 biolink:NamedThing KDM5D monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11117 biolink:NamedThing SMN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11118 biolink:NamedThing SMN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11119 biolink:NamedThing SMO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11120 biolink:NamedThing SMPD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11122 biolink:NamedThing SMPX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11123 biolink:NamedThing SMS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11132 biolink:NamedThing SNAP25 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11133 biolink:NamedThing SNAP29 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11138 biolink:NamedThing SNCA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11139 biolink:NamedThing SNCAIP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11140 biolink:NamedThing SNCB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11142 biolink:NamedThing SIK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11153 biolink:NamedThing SNRPB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11161 biolink:NamedThing SNRPE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11164 biolink:NamedThing SNRPN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11167 biolink:NamedThing SNTA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11179 biolink:NamedThing SOD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11180 biolink:NamedThing SOD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11183 biolink:NamedThing SON monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11185 biolink:NamedThing SORL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11187 biolink:NamedThing SOS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11188 biolink:NamedThing SOS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11190 biolink:NamedThing SOX10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11191 biolink:NamedThing SOX11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11194 biolink:NamedThing SOX18 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11195 biolink:NamedThing SOX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11199 biolink:NamedThing SOX3 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11237 biolink:NamedThing SPG7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11244 biolink:NamedThing SPINK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11247 biolink:NamedThing SPINT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11257 biolink:NamedThing SPR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11270 biolink:NamedThing SPRY2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11272 biolink:NamedThing SPTA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11273 biolink:NamedThing SPTAN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11274 biolink:NamedThing SPTB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11276 biolink:NamedThing SPTBN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11277 biolink:NamedThing SPTLC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11278 biolink:NamedThing SPTLC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11280 biolink:NamedThing SQSTM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11281 biolink:NamedThing SRA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11283 biolink:NamedThing SRC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11285 biolink:NamedThing SRD5A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11303 biolink:NamedThing SRP72 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11311 biolink:NamedThing SRY monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11326 biolink:NamedThing SSR4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1133 biolink:NamedThing BTK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11335 biolink:NamedThing SSX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11336 biolink:NamedThing SSX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11354 biolink:NamedThing STAG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11356 biolink:NamedThing STAG3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11359 biolink:NamedThing STAR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11362 biolink:NamedThing STAT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11363 biolink:NamedThing STAT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11364 biolink:NamedThing STAT3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11365 biolink:NamedThing STAT4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11367 biolink:NamedThing STAT5B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11386 biolink:NamedThing STIM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11389 biolink:NamedThing STK11 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11431 biolink:NamedThing STX16 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11444 biolink:NamedThing STXBP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11445 biolink:NamedThing STXBP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11448 biolink:NamedThing SUCLA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11449 biolink:NamedThing SUCLG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11460 biolink:NamedThing SUOX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11474 biolink:NamedThing SURF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11480 biolink:NamedThing SVIL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1149 biolink:NamedThing BUB1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11494 biolink:NamedThing SYN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11495 biolink:NamedThing SYN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11497 biolink:NamedThing SYNGAP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11503 biolink:NamedThing SYNJ1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11506 biolink:NamedThing SYP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11509 biolink:NamedThing SYT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11510 biolink:NamedThing SYT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11515 biolink:NamedThing TBXT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1152 biolink:NamedThing BVES monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11521 biolink:NamedThing TAC3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11528 biolink:NamedThing TACR3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11529 biolink:NamedThing EPCAM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11530 biolink:NamedThing TACSTD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11535 biolink:NamedThing TAF1 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11566 biolink:NamedThing TAPBP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11571 biolink:NamedThing TARDBP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11573 biolink:NamedThing TAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11577 biolink:NamedThing TAZ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11581 biolink:NamedThing TBCD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11582 biolink:NamedThing TBCE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11584 biolink:NamedThing TBK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11588 biolink:NamedThing TBP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11592 biolink:NamedThing TBX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11594 biolink:NamedThing TBX15 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11595 biolink:NamedThing TBX18 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11596 biolink:NamedThing TBX19 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11598 biolink:NamedThing TBX20 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11599 biolink:NamedThing TBX21 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1160 biolink:NamedThing TWNK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11600 biolink:NamedThing TBX22 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11602 biolink:NamedThing TBX3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11603 biolink:NamedThing TBX4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11604 biolink:NamedThing TBX5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11605 biolink:NamedThing TBX6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11608 biolink:NamedThing TBXA2R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11609 biolink:NamedThing TBXAS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1161 biolink:NamedThing CEP55 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11610 biolink:NamedThing TCAP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11621 biolink:NamedThing HNF1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11623 biolink:NamedThing TCF12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11630 biolink:NamedThing HNF1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11633 biolink:NamedThing TCF3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11634 biolink:NamedThing TCF4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11641 biolink:NamedThing TCF7L2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11642 biolink:NamedThing ZEB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11647 biolink:NamedThing TCIRG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11653 biolink:NamedThing TCN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11654 biolink:NamedThing TCOF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11708 biolink:NamedThing TDO2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1171 biolink:NamedThing ELP4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11714 biolink:NamedThing TEAD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11720 biolink:NamedThing TECTA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11724 biolink:NamedThing TEK monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11758 biolink:NamedThing TFG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11762 biolink:NamedThing TFR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11763 biolink:NamedThing TFRC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11764 biolink:NamedThing TG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11766 biolink:NamedThing TGFB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11768 biolink:NamedThing TGFB2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11769 biolink:NamedThing TGFB3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11771 biolink:NamedThing TGFBI monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11772 biolink:NamedThing TGFBR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11773 biolink:NamedThing TGFBR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11776 biolink:NamedThing TGIF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11777 biolink:NamedThing TGM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11779 biolink:NamedThing TGM3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11781 biolink:NamedThing TGM5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11782 biolink:NamedThing TH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11784 biolink:NamedThing THBD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11786 biolink:NamedThing THBS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11791 biolink:NamedThing TCHH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11795 biolink:NamedThing THPO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11796 biolink:NamedThing THRA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11799 biolink:NamedThing THRB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:118 biolink:NamedThing ACO2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11802 biolink:NamedThing TIA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11811 biolink:NamedThing KLF11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11812 biolink:NamedThing TRIM24 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11817 biolink:NamedThing TIMM8A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11822 biolink:NamedThing TIMP3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11824 biolink:NamedThing TINF2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11825 biolink:NamedThing NKX2-1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11828 biolink:NamedThing TJP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11831 biolink:NamedThing TK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11834 biolink:NamedThing TKT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11843 biolink:NamedThing TLL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11847 biolink:NamedThing TLR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11848 biolink:NamedThing TLR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11849 biolink:NamedThing TLR3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11850 biolink:NamedThing TLR4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11851 biolink:NamedThing TLR5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11854 biolink:NamedThing TSPAN7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11875 biolink:NamedThing TMPO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11892 biolink:NamedThing TNF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11896 biolink:NamedThing TNFAIP3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:119 biolink:NamedThing ACOX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1190 biolink:NamedThing NPAP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11905 biolink:NamedThing TNFRSF10B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11908 biolink:NamedThing TNFRSF11A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11909 biolink:NamedThing TNFRSF11B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11916 biolink:NamedThing TNFRSF1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11918 biolink:NamedThing TNFRSF4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11919 biolink:NamedThing CD40 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11920 biolink:NamedThing FAS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11922 biolink:NamedThing CD27 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11926 biolink:NamedThing TNFSF11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11934 biolink:NamedThing TNFSF4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11935 biolink:NamedThing CD40LG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11936 biolink:NamedThing FASLG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11937 biolink:NamedThing CD70 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11943 biolink:NamedThing TNNC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11946 biolink:NamedThing TNNI2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11947 biolink:NamedThing TNNI3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11948 biolink:NamedThing TNNT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11949 biolink:NamedThing TNNT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11950 biolink:NamedThing TNNT3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11957 biolink:NamedThing MED12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11960 biolink:NamedThing GIGYF2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11976 biolink:NamedThing TNXB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:11998 biolink:NamedThing TP53 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:120 biolink:NamedThing ACOX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12009 biolink:NamedThing TPI1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12010 biolink:NamedThing TPM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12011 biolink:NamedThing TPM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12012 biolink:NamedThing TPM3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12014 biolink:NamedThing TPMT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12015 biolink:NamedThing TPO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12029 biolink:NamedThing TRAC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12033 biolink:NamedThing TRAF3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12261 biolink:NamedThing TRDN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12266 biolink:NamedThing TREH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12269 biolink:NamedThing TREX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1228 biolink:NamedThing SERPING1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12298 biolink:NamedThing TRH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:123 biolink:NamedThing ACP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12303 biolink:NamedThing TRIO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12305 biolink:NamedThing TRIP11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12309 biolink:NamedThing ZNHIT3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12310 biolink:NamedThing TRIP4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1232 biolink:NamedThing EGLN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12335 biolink:NamedThing TRPC3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12338 biolink:NamedThing TRPC6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12340 biolink:NamedThing TRPS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12362 biolink:NamedThing TSC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12363 biolink:NamedThing TSC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12367 biolink:NamedThing TSFM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12370 biolink:NamedThing CEP41 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12420 biolink:NamedThing TUFM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12423 biolink:NamedThing TULP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12428 biolink:NamedThing TWIST1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12440 biolink:NamedThing TYK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12442 biolink:NamedThing TYR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12449 biolink:NamedThing TYROBP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1245 biolink:NamedThing C1QC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12450 biolink:NamedThing TYRP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1246 biolink:NamedThing C1R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12463 biolink:NamedThing UBB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12469 biolink:NamedThing UBA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1247 biolink:NamedThing C1S monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12472 biolink:NamedThing UBE2A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1248 biolink:NamedThing C2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12496 biolink:NamedThing UBE3A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12502 biolink:NamedThing SUMO1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12509 biolink:NamedThing UBQLN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12513 biolink:NamedThing UCHL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12517 biolink:NamedThing UCP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12519 biolink:NamedThing UCP3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12530 biolink:NamedThing UGT1A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12559 biolink:NamedThing UMOD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12563 biolink:NamedThing UMPS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12565 biolink:NamedThing UNC119 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12572 biolink:NamedThing UNG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12582 biolink:NamedThing UQCRB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12586 biolink:NamedThing UQCRC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12591 biolink:NamedThing UROD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12592 biolink:NamedThing UROS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12593 biolink:NamedThing USF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12597 biolink:NamedThing USH1C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1260 biolink:NamedThing CFAP410 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12601 biolink:NamedThing USH2A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12605 biolink:NamedThing CLRN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12630 biolink:NamedThing USP7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12631 biolink:NamedThing USP8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12632 biolink:NamedThing USP9X monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12633 biolink:NamedThing USP9Y monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12637 biolink:NamedThing KDM6A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12642 biolink:NamedThing VAMP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12649 biolink:NamedThing VAPB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12660 biolink:NamedThing VAX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12665 biolink:NamedThing VCL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12666 biolink:NamedThing VCP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12668 biolink:NamedThing VCY monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12679 biolink:NamedThing VDR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1268 biolink:NamedThing TSPEAR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12680 biolink:NamedThing VEGFA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12682 biolink:NamedThing VEGFC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12687 biolink:NamedThing VHL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12692 biolink:NamedThing VIM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12698 biolink:NamedThing VLDLR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12703 biolink:NamedThing BEST1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12712 biolink:NamedThing VPS33B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12718 biolink:NamedThing VRK1 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12766 biolink:NamedThing NSD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12771 biolink:NamedThing CCN6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12774 biolink:NamedThing WNT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12775 biolink:NamedThing WNT10B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12782 biolink:NamedThing WNT3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12783 biolink:NamedThing WNT4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12784 biolink:NamedThing WNT5A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12786 biolink:NamedThing WNT7A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12791 biolink:NamedThing WRN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12796 biolink:NamedThing WT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12799 biolink:NamedThing WWOX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12801 biolink:NamedThing XBP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12805 biolink:NamedThing XDH (human) A protein coding gene XDH in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12811 biolink:NamedThing XK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12814 biolink:NamedThing XPA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12816 biolink:NamedThing XPC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12823 biolink:NamedThing XPNPEP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12827 biolink:NamedThing XPR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12829 biolink:NamedThing XRCC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12830 biolink:NamedThing XRCC3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12831 biolink:NamedThing XRCC4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12840 biolink:NamedThing YARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12843 biolink:NamedThing YME1L1 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12930 biolink:NamedThing ZBTB16 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12933 biolink:NamedThing ZNF148 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:12974 biolink:NamedThing RNF113A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:130 biolink:NamedThing ACTA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1301 biolink:NamedThing CFAP298 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13013 biolink:NamedThing KAT6A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13030 biolink:NamedThing ZBTB18 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1304 biolink:NamedThing MRAP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13128 biolink:NamedThing ZNF711 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13156 biolink:NamedThing ZNF81 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13164 biolink:NamedThing CNBP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13176 biolink:NamedThing IKZF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1318 biolink:NamedThing C3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13187 biolink:NamedThing ZP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:132 biolink:NamedThing ACTB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13201 biolink:NamedThing ADAMTS10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13203 biolink:NamedThing AICDA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1321 biolink:NamedThing TIMMDC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13210 biolink:NamedThing ARL6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13211 biolink:NamedThing ATP2C1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13221 biolink:NamedThing BCL11A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13222 biolink:NamedThing BCL11B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1323 biolink:NamedThing C4A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1324 biolink:NamedThing C4B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13243 biolink:NamedThing LMBR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13254 biolink:NamedThing FTSJ1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13273 biolink:NamedThing DUOX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13281 biolink:NamedThing ESPN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1330 biolink:NamedThing MYOZ2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1331 biolink:NamedThing C5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13339 biolink:NamedThing KIF4A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13345 biolink:NamedThing LPIN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13356 biolink:NamedThing MCOLN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13387 biolink:NamedThing NEK8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1339 biolink:NamedThing C6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13394 biolink:NamedThing NPHS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13398 biolink:NamedThing NSDHL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13406 biolink:NamedThing PCLO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13429 biolink:NamedThing RLIM monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13481 biolink:NamedThing UNC93B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13486 biolink:NamedThing USP27X monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13487 biolink:NamedThing VPS35 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1349 biolink:NamedThing SAMD9L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13503 biolink:NamedThing ZBTB20 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13508 biolink:NamedThing BPY2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13517 biolink:NamedThing CLIC5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1352 biolink:NamedThing C8A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1353 biolink:NamedThing C8B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13530 biolink:NamedThing RXYLT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13533 biolink:NamedThing ATP8A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13556 biolink:NamedThing IFT122 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1356 biolink:NamedThing ERLIN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1358 biolink:NamedThing C9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13586 biolink:NamedThing FBXO7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13601 biolink:NamedThing FBXL4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1362 biolink:NamedThing FRRS1L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1366 biolink:NamedThing ADAMTS13 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13666 biolink:NamedThing AAAS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13672 biolink:NamedThing KLF13 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13681 biolink:NamedThing DCHS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1371 biolink:NamedThing CA12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:13711 biolink:NamedThing POF1B monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1402 biolink:NamedThing CACNB2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14024 biolink:NamedThing PRY monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14025 biolink:NamedThing SLC5A7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1404 biolink:NamedThing CACNB4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14048 biolink:NamedThing MRPS16 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1406 biolink:NamedThing CACNG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14064 biolink:NamedThing HDAC6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14074 biolink:NamedThing FMN2 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14344 biolink:NamedThing C1QTNF5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14348 biolink:NamedThing HTRA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14357 biolink:NamedThing MMP21 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14361 biolink:NamedThing IRX5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14372 biolink:NamedThing SCYL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14373 biolink:NamedThing GLMN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14374 biolink:NamedThing NLRP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:14376 biolink:NamedThing ACP4 monarch-merged.owl 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biolink:NamedThing PIGM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18865 biolink:NamedThing KCNT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18871 biolink:NamedThing MMAA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18873 biolink:NamedThing IFIH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18884 biolink:NamedThing TDP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18957 biolink:NamedThing MAGI2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18969 biolink:NamedThing IL31RA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18971 biolink:NamedThing AP1S3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18985 biolink:NamedThing DCXR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:18986 biolink:NamedThing GBA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19 biolink:NamedThing AANAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19012 biolink:NamedThing CORIN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19016 biolink:NamedThing TRIM44 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19027 biolink:NamedThing LRRC8A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19041 biolink:NamedThing COQ8B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19042 biolink:NamedThing MASTL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19048 biolink:NamedThing ASPM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19073 biolink:NamedThing THOC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19077 biolink:NamedThing NCR3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1908 biolink:NamedThing VPS13A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19082 biolink:NamedThing NALCN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19087 biolink:NamedThing EBF3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19100 biolink:NamedThing IL23R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19102 biolink:NamedThing DDX58 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19104 biolink:NamedThing NPHP4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1912 biolink:NamedThing CHAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19125 biolink:NamedThing FGD4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19129 biolink:NamedThing PSAT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19139 biolink:NamedThing POMGNT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19141 biolink:NamedThing TTBK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1915 biolink:NamedThing CHD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19165 biolink:NamedThing TBC1D4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1917 biolink:NamedThing CHD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19181 biolink:NamedThing KIF14 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19185 biolink:NamedThing FRAS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19189 biolink:NamedThing DOCK6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1919 biolink:NamedThing CHD4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19190 biolink:NamedThing DOCK7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19191 biolink:NamedThing DOCK8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19194 biolink:NamedThing HMCN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19218 biolink:NamedThing PLCZ1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19237 biolink:NamedThing NANS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19261 biolink:NamedThing MTO1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19263 biolink:NamedThing LMAN2L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19286 biolink:NamedThing SCYL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19309 biolink:NamedThing KANK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19316 biolink:NamedThing P3H1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19317 biolink:NamedThing P3H2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1932 biolink:NamedThing CHI3L1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19321 biolink:NamedThing NKX6-2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19331 biolink:NamedThing MMAB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19344 biolink:NamedThing DENND5A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19349 biolink:NamedThing KIF21A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19351 biolink:NamedThing BICC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19353 biolink:NamedThing SIN3A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19358 biolink:NamedThing ALG12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1936 biolink:NamedThing CHIT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19368 biolink:NamedThing HYDIN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1938 biolink:NamedThing CHKB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19380 biolink:NamedThing RNU12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1940 biolink:NamedThing CHM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19412 biolink:NamedThing ZMYND10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19414 biolink:NamedThing DPY19L2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1943 biolink:NamedThing CHN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19439 biolink:NamedThing KCNK18 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19440 biolink:NamedThing SBDS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:195 biolink:NamedThing ADAM17 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1952 biolink:NamedThing CHRM3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1955 biolink:NamedThing CHRNA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1956 biolink:NamedThing CHRNA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1958 biolink:NamedThing CHRNA4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1960 biolink:NamedThing CHRNA7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1961 biolink:NamedThing CHRNB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1962 biolink:NamedThing CHRNB2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1965 biolink:NamedThing CHRND monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1966 biolink:NamedThing CHRNE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19661 biolink:NamedThing TNNI3K monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1967 biolink:NamedThing CHRNG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1968 biolink:NamedThing LYST monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19687 biolink:NamedThing EIF2AK4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19688 biolink:NamedThing NECTIN4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19689 biolink:NamedThing RD3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19691 biolink:NamedThing MECR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19693 biolink:NamedThing COQ4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19698 biolink:NamedThing KCNV2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19706 biolink:NamedThing ADAMTSL4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1971 biolink:NamedThing CHST3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19714 biolink:NamedThing DDHD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19721 biolink:NamedThing CANT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1974 biolink:NamedThing CHUK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19743 biolink:NamedThing POMT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19747 biolink:NamedThing EVC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:1975 biolink:NamedThing VSX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19750 biolink:NamedThing TTC7A monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19899 biolink:NamedThing ZFAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19954 biolink:NamedThing SLC25A22 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19957 biolink:NamedThing TECPR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19960 biolink:NamedThing KIAA0586 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19963 biolink:NamedThing TTLL5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19967 biolink:NamedThing CCDC88C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19977 biolink:NamedThing RDH12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:19986 biolink:NamedThing CYCS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20 biolink:NamedThing AARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20001 biolink:NamedThing PCSK9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20041 biolink:NamedThing ZNF408 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20087 biolink:NamedThing TTC8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20093 biolink:NamedThing ADSS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20105 biolink:NamedThing FLVCR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20134 biolink:NamedThing GLRX5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20145 biolink:NamedThing GPR143 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20151 biolink:NamedThing SLC17A8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20153 biolink:NamedThing CHD8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20188 biolink:NamedThing DNAAF2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2019 biolink:NamedThing CLCN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20193 biolink:NamedThing HFM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20194 biolink:NamedThing POLR1C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20197 biolink:NamedThing SLC35C1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2020 biolink:NamedThing CLCN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20202 biolink:NamedThing CACNA2D4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20207 biolink:NamedThing B3GLCT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2022 biolink:NamedThing CLCN4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2023 biolink:NamedThing CLCN5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20233 biolink:NamedThing COQ6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20249 biolink:NamedThing SPRED1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2025 biolink:NamedThing CLCN7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2026 biolink:NamedThing CLCNKA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2027 biolink:NamedThing CLCNKB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20278 biolink:NamedThing NUBPL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20297 biolink:NamedThing SLITRK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20303 biolink:NamedThing SLC30A8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20305 biolink:NamedThing SLC34A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20311 biolink:NamedThing CHAMP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20318 biolink:NamedThing SMOC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2032 biolink:NamedThing CLDN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20323 biolink:NamedThing SMOC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20324 biolink:NamedThing TGDS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2033 biolink:NamedThing CLDN10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20330 biolink:NamedThing POMP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20340 biolink:NamedThing PRICKLE2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:20342 biolink:NamedThing ZDHHC15 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:23734 biolink:NamedThing PTF1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2375 biolink:NamedThing MED17 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:23752 biolink:NamedThing CERS3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:23785 biolink:NamedThing PIKFYVE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2379 biolink:NamedThing CRTAP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:23791 biolink:NamedThing INF2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:23801 biolink:NamedThing SIPA1L3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:23805 biolink:NamedThing ASXL2 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2482 biolink:NamedThing CSTB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:24858 biolink:NamedThing MFF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:24861 biolink:NamedThing G6PC3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:24862 biolink:NamedThing MOGS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:24866 biolink:NamedThing CEP104 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:24872 biolink:NamedThing GNAS-AS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2488 biolink:NamedThing NKX2-5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:24891 biolink:NamedThing DCAF8 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25230 biolink:NamedThing AHDC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25240 biolink:NamedThing ANO6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25244 biolink:NamedThing CCDC39 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2528 biolink:NamedThing CTSC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25280 biolink:NamedThing ODAD4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2529 biolink:NamedThing CTSD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25302 biolink:NamedThing COQ9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2531 biolink:NamedThing CTSF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25355 biolink:NamedThing SLC30A10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25356 biolink:NamedThing SPRTN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25358 biolink:NamedThing RNF170 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2536 biolink:NamedThing CTSK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25360 biolink:NamedThing DDX59 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25367 biolink:NamedThing CCDC8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25382 biolink:NamedThing TMEM126A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:25396 biolink:NamedThing FREM2 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26034 biolink:NamedThing SDHAF2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26038 biolink:NamedThing TMEM127 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2605 biolink:NamedThing CYP27A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26050 biolink:NamedThing TMEM70 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26054 biolink:NamedThing SLC25A38 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2606 biolink:NamedThing CYP27B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26090 biolink:NamedThing CCDC40 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2610 biolink:NamedThing CYP2A6 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2623 biolink:NamedThing CYP2C9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26230 biolink:NamedThing TM4SF20 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2625 biolink:NamedThing CYP2D6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26257 biolink:NamedThing PDZD7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26262 biolink:NamedThing TTI2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26267 biolink:NamedThing POMK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26270 biolink:NamedThing PIEZO2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26274 biolink:NamedThing NARS2 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26582 biolink:NamedThing UNC80 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26594 biolink:NamedThing DOK7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26600 biolink:NamedThing WDR81 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2661 biolink:NamedThing DAB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26624 biolink:NamedThing KDF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26648 biolink:NamedThing BBS12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2665 biolink:NamedThing CD55 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2666 biolink:NamedThing DAG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26661 biolink:NamedThing RNF168 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26690 biolink:NamedThing CEP120 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26703 biolink:NamedThing SYNE4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2671 biolink:NamedThing DAO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26724 biolink:NamedThing ANKS6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26742 biolink:NamedThing NAT8L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2678 biolink:NamedThing DARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:26784 biolink:NamedThing MTRFR monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2707 biolink:NamedThing ACE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2708 biolink:NamedThing DCR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:27089 biolink:NamedThing CARMIL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2711 biolink:NamedThing DCTN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2714 biolink:NamedThing DCX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2718 biolink:NamedThing DDB2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2719 biolink:NamedThing DDC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:27230 biolink:NamedThing ESCO2 monarch-merged.owl owl:Class 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2896 biolink:NamedThing DLAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2897 biolink:NamedThing DLC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2898 biolink:NamedThing DLD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:28984 biolink:NamedThing WASHC5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:28986 biolink:NamedThing ZNF592 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2899 biolink:NamedThing DLEC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:28991 biolink:NamedThing RUBCN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:28993 biolink:NamedThing PIEZO1 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29144 biolink:NamedThing EHBP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2916 biolink:NamedThing DLX3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29160 biolink:NamedThing FASTKD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29168 biolink:NamedThing RPGRIP1L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2917 biolink:NamedThing DLX4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29170 biolink:NamedThing FAN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29174 biolink:NamedThing WASHC4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2918 biolink:NamedThing DLX5 monarch-merged.owl 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biolink:NamedThing CEP152 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29300 biolink:NamedThing KANK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29304 biolink:NamedThing UVSSA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29316 biolink:NamedThing ZSWIM6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2932 biolink:NamedThing DMP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29326 biolink:NamedThing SLC7A14 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2933 biolink:NamedThing DMPK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29331 biolink:NamedThing EPG5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29347 biolink:NamedThing KLHL15 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29357 biolink:NamedThing ASXL3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2938 biolink:NamedThing DMXL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2939 biolink:NamedThing DNA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29401 biolink:NamedThing MYSM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29419 biolink:NamedThing EARS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2942 biolink:NamedThing DNAH11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29420 biolink:NamedThing RSPRY1 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29502 biolink:NamedThing PJVK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29508 biolink:NamedThing KIDINS220 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29514 biolink:NamedThing GLDN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29515 biolink:NamedThing PLEKHG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29521 biolink:NamedThing C12orf57 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29529 biolink:NamedThing TBL1XR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29536 biolink:NamedThing MAPKBP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2954 biolink:NamedThing DNAI1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2955 biolink:NamedThing DNAL4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29557 biolink:NamedThing NEXN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2956 biolink:NamedThing DNASE1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29561 biolink:NamedThing ARV1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29569 biolink:NamedThing LIPT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2959 biolink:NamedThing DNASE1L3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29594 biolink:NamedThing UQCRQ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29597 biolink:NamedThing IRGM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29605 biolink:NamedThing SH2B3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2961 biolink:NamedThing DYNC1H1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29634 biolink:NamedThing MEGF10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29643 biolink:NamedThing MLPH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29659 biolink:NamedThing MESP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29666 biolink:NamedThing MTFMT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29669 biolink:NamedThing IFT43 monarch-merged.owl 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biolink:NamedThing GATAD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29944 biolink:NamedThing TENM3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29945 biolink:NamedThing TENM4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:2995 biolink:NamedThing DPAGT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30000 biolink:NamedThing BBS9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30022 biolink:NamedThing PPARGC1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3003 biolink:NamedThing DPH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30032 biolink:NamedThing PACS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30035 biolink:NamedThing PIK3R5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3005 biolink:NamedThing DPM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3006 biolink:NamedThing DPM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3007 biolink:NamedThing DPM3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30074 biolink:NamedThing POLR3A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30078 biolink:NamedThing REEP6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30089 biolink:NamedThing PWAR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3010 biolink:NamedThing DPP6 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30213 biolink:NamedThing ATP13A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30220 biolink:NamedThing RFT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30224 biolink:NamedThing SLC52A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30225 biolink:NamedThing SLC52A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3023 biolink:NamedThing DRD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30237 biolink:NamedThing CC2D1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3024 biolink:NamedThing DRD3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30242 biolink:NamedThing TUSC3 monarch-merged.owl 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biolink:NamedThing DSPP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30546 biolink:NamedThing FDX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30551 biolink:NamedThing TXNL4A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3057 biolink:NamedThing DTNA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30578 biolink:NamedThing EXPH5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30587 biolink:NamedThing SNIP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30605 biolink:NamedThing SEPSECS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30611 biolink:NamedThing STT3B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30650 biolink:NamedThing STRA6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30664 biolink:NamedThing CLPB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30668 biolink:NamedThing SRPX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30696 biolink:NamedThing WDR36 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30718 biolink:NamedThing DNAJB13 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3072 biolink:NamedThing DUSP6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30740 biolink:NamedThing TARS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30760 biolink:NamedThing TMEM165 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30829 biolink:NamedThing TUBB2B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30831 biolink:NamedThing TDRD7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30832 biolink:NamedThing TRAPPC9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30836 biolink:NamedThing POC1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30839 biolink:NamedThing KRT25 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3084 biolink:NamedThing DVL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30858 biolink:NamedThing EFTUD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30859 biolink:NamedThing SNRNP200 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3087 biolink:NamedThing DVL3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30881 biolink:NamedThing ALG13 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30883 biolink:NamedThing TMEM126B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30892 biolink:NamedThing HUWE1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3091 biolink:NamedThing DYRK1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3092 biolink:NamedThing DYRK1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30922 biolink:NamedThing LINS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30927 biolink:NamedThing SLC6A20 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30935 biolink:NamedThing YY1AP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30939 biolink:NamedThing ZFHX4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3097 biolink:NamedThing DYSF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:30972 biolink:NamedThing SECISBP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3098 biolink:NamedThing TOR1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3133 biolink:NamedThing EBP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:31371 biolink:NamedThing GPR179 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3192 biolink:NamedThing EEF1A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:31923 biolink:NamedThing LCA5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:31928 biolink:NamedThing NBEAL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:31948 biolink:NamedThing CEACAM16 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:321 biolink:NamedThing AGL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3214 biolink:NamedThing EEF2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3218 biolink:NamedThing EFEMP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3219 biolink:NamedThing EFEMP2 monarch-merged.owl 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biolink:NamedThing EIF4E monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:329 biolink:NamedThing AGRN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:32925 biolink:NamedThing ATXN8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:32940 biolink:NamedThing NKX2-6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:32952 biolink:NamedThing SNORD118 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3296 biolink:NamedThing EIF4G1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:33 biolink:NamedThing ABCA3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:330 biolink:NamedThing AGRP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:33020 biolink:NamedThing SNORD115-1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:33067 biolink:NamedThing SNORD116-1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3309 biolink:NamedThing ELANE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:33235 biolink:NamedThing PWRN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3327 biolink:NamedThing ELN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:333 biolink:NamedThing AGT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3330 biolink:NamedThing EML1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3331 biolink:NamedThing EMD monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3378 biolink:NamedThing EPB41L1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3381 biolink:NamedThing EPB42 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3383 biolink:NamedThing STOM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:33848 biolink:NamedThing COA5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3386 biolink:NamedThing EPHA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:33862 biolink:NamedThing GRXCR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:33867 biolink:NamedThing SDHAF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3393 biolink:NamedThing 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FLNA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3755 biolink:NamedThing FLNB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3756 biolink:NamedThing FLNC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3762 biolink:NamedThing FLRT3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3765 biolink:NamedThing FLT3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3767 biolink:NamedThing FLT4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3771 biolink:NamedThing FMO3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3775 biolink:NamedThing FMR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3776 biolink:NamedThing AFF2 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PRSS56 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3948 biolink:NamedThing FRAXD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:395 biolink:NamedThing ALAD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3951 biolink:NamedThing FXN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3954 biolink:NamedThing FRG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3959 biolink:NamedThing FRZB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3960 biolink:NamedThing FSCN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3964 biolink:NamedThing FSHB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:3969 biolink:NamedThing FSHR 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4006 biolink:NamedThing FUCA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4010 biolink:NamedThing FUS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4012 biolink:NamedThing FUT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4017 biolink:NamedThing FUT6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4026 biolink:NamedThing FXYD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:403 biolink:NamedThing ALDH3A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4035 biolink:NamedThing ACKR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4036 biolink:NamedThing FYB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:404 biolink:NamedThing ALDH2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4042 biolink:NamedThing FZD4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4044 biolink:NamedThing FZD6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4053 biolink:NamedThing ISG15 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4056 biolink:NamedThing G6PC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4057 biolink:NamedThing G6PD (human) A protein coding gene G6PD in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:406 biolink:NamedThing ALDH4A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4061 biolink:NamedThing SLC37A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4065 biolink:NamedThing GAA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4075 biolink:NamedThing GABRA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4076 biolink:NamedThing GABRA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:408 biolink:NamedThing ALDH5A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4081 biolink:NamedThing GABRB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4083 biolink:NamedThing GABRB3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4084 biolink:NamedThing GABRD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4087 biolink:NamedThing GABRG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:409 biolink:NamedThing ALDH1A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4092 biolink:NamedThing GAD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4114 biolink:NamedThing GAL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4115 biolink:NamedThing GALC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4116 biolink:NamedThing GALE (human) A protein coding gene GALE in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4118 biolink:NamedThing GALK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4122 biolink:NamedThing GALNS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4135 biolink:NamedThing GALT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4136 biolink:NamedThing GAMT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4137 biolink:NamedThing GAN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4138 biolink:NamedThing GANAB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:414 biolink:NamedThing ALDOA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4162 biolink:NamedThing GARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4166 biolink:NamedThing GAS8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:417 biolink:NamedThing ALDOB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4170 biolink:NamedThing GATA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4171 biolink:NamedThing GATA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4172 biolink:NamedThing GATA3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4173 biolink:NamedThing GATA4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4174 biolink:NamedThing GATA6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4175 biolink:NamedThing GATM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4177 biolink:NamedThing GBA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4180 biolink:NamedThing GBE1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4189 biolink:NamedThing GCDH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4192 biolink:NamedThing GCGR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4193 biolink:NamedThing GCH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4195 biolink:NamedThing GCK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4198 biolink:NamedThing GCM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:42 biolink:NamedThing ABCB11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4204 biolink:NamedThing GCNT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4206 biolink:NamedThing OPN1MW monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4208 biolink:NamedThing GCSH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4214 biolink:NamedThing GDF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4217 biolink:NamedThing GDF2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4218 biolink:NamedThing GDF3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4220 biolink:NamedThing GDF5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4221 biolink:NamedThing GDF6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4223 biolink:NamedThing MSTN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4226 biolink:NamedThing GDI1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4232 biolink:NamedThing GDNF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4235 biolink:NamedThing GFAP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4236 biolink:NamedThing GFER monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4237 biolink:NamedThing GFI1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4238 biolink:NamedThing GFI1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4241 biolink:NamedThing GFPT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4247 biolink:NamedThing GGCX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4250 biolink:NamedThing GGT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4261 biolink:NamedThing GH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4263 biolink:NamedThing GHR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4266 biolink:NamedThing GHRHR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4268 biolink:NamedThing CBLIF A protein coding gene CBLIF in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:427 biolink:NamedThing ALK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4274 biolink:NamedThing GJA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4277 biolink:NamedThing GJA3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4279 biolink:NamedThing GJA5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:428 biolink:NamedThing ALMS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4281 biolink:NamedThing GJA8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4283 biolink:NamedThing GJB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4284 biolink:NamedThing GJB2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4285 biolink:NamedThing GJB3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4286 biolink:NamedThing GJB4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4288 biolink:NamedThing GJB6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4289 biolink:NamedThing GK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4296 biolink:NamedThing GLA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4298 biolink:NamedThing GLB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:43 biolink:NamedThing TAP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:430 biolink:NamedThing ALOX12B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4311 biolink:NamedThing GCLC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4312 biolink:NamedThing GCLM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4313 biolink:NamedThing GLDC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4315 biolink:NamedThing GLE1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4318 biolink:NamedThing GLI2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4319 biolink:NamedThing GLI3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4326 biolink:NamedThing GLRA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4329 biolink:NamedThing GLRB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4331 biolink:NamedThing GLS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4335 biolink:NamedThing GLUD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4336 biolink:NamedThing GLUD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4341 biolink:NamedThing GLUL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:435 biolink:NamedThing ALOX5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:436 biolink:NamedThing ALOX5AP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4367 biolink:NamedThing GM2A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:438 biolink:NamedThing ALPL (human) A protein coding gene ALPL in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4385 biolink:NamedThing GNAI2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4387 biolink:NamedThing GNAI3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4388 biolink:NamedThing GNAL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4389 biolink:NamedThing GNAO1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4390 biolink:NamedThing GNAQ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4392 biolink:NamedThing GNAS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4393 biolink:NamedThing GNAT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4394 biolink:NamedThing GNAT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4396 biolink:NamedThing GNB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:44 biolink:NamedThing TAP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4400 biolink:NamedThing GNB3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4401 biolink:NamedThing GNB5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4415 biolink:NamedThing GNMT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4416 biolink:NamedThing GNPAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4419 biolink:NamedThing GNRH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4421 biolink:NamedThing GNRHR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4422 biolink:NamedThing GNS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4428 biolink:NamedThing GOLGA5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:443 biolink:NamedThing ALS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4431 biolink:NamedThing GOSR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4439 biolink:NamedThing GP1BA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4440 biolink:NamedThing GP1BB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4444 biolink:NamedThing GP9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4446 biolink:NamedThing GPAA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:445 biolink:NamedThing SETX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4451 biolink:NamedThing GPC3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4452 biolink:NamedThing GPC4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4454 biolink:NamedThing GPC6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4455 biolink:NamedThing GPD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4456 biolink:NamedThing GPD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4458 biolink:NamedThing GPI A protein coding gene GPI in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:449 biolink:NamedThing ALX3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:45 biolink:NamedThing ABCB4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:450 biolink:NamedThing ALX4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4507 biolink:NamedThing GABBR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:451 biolink:NamedThing AMACR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4510 biolink:NamedThing KISS1R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4512 biolink:NamedThing ADGRG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4516 biolink:NamedThing ADGRG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4519 biolink:NamedThing GPR68 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:452 biolink:NamedThing AMBN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4539 biolink:NamedThing GPR88 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4551 biolink:NamedThing TECR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4553 biolink:NamedThing GPX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4556 biolink:NamedThing GPX4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4570 biolink:NamedThing GRHPR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4573 biolink:NamedThing GRIA3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4576 biolink:NamedThing GRID2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4580 biolink:NamedThing GRIK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4584 biolink:NamedThing GRIN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4585 biolink:NamedThing GRIN2A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4586 biolink:NamedThing GRIN2B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4588 biolink:NamedThing GRIN2D monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4593 biolink:NamedThing GRM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4598 biolink:NamedThing GRM6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4601 biolink:NamedThing GRN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:461 biolink:NamedThing AMELX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4612 biolink:NamedThing GSC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4620 biolink:NamedThing GSN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4624 biolink:NamedThing GSS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:464 biolink:NamedThing AMH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:465 biolink:NamedThing AMHR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4651 biolink:NamedThing GTF2E2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:467 biolink:NamedThing AMMECR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4678 biolink:NamedThing GUCA1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4679 biolink:NamedThing GUCA1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:468 biolink:NamedThing AMPD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4685 biolink:NamedThing GUCY1A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4688 biolink:NamedThing GUCY2C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4689 biolink:NamedThing GUCY2D monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:469 biolink:NamedThing AMPD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4696 biolink:NamedThing GUSB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4699 biolink:NamedThing GYG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:47 biolink:NamedThing ABCB6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:470 biolink:NamedThing AMPD3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4702 biolink:NamedThing GYPA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4703 biolink:NamedThing GYPB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4704 biolink:NamedThing GYPC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4706 biolink:NamedThing GYS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4707 biolink:NamedThing GYS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4713 biolink:NamedThing H19 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:473 biolink:NamedThing AMT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4795 biolink:NamedThing H6PD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4796 biolink:NamedThing HAAO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4798 biolink:NamedThing HABP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4799 biolink:NamedThing HADH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:48 biolink:NamedThing ABCB7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4800 biolink:NamedThing HSD17B10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4801 biolink:NamedThing HADHA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4803 biolink:NamedThing HADHB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4805 biolink:NamedThing HAGH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4806 biolink:NamedThing HAL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4814 biolink:NamedThing KALRN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4816 biolink:NamedThing HARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4817 biolink:NamedThing HARS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4823 biolink:NamedThing HBA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4824 biolink:NamedThing HBA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4827 biolink:NamedThing HBB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:483 biolink:NamedThing ANG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4832 biolink:NamedThing HBG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4837 biolink:NamedThing HCCS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4838 biolink:NamedThing SERPIND1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4839 biolink:NamedThing HCFC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4845 biolink:NamedThing HCN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4847 biolink:NamedThing HCRT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4851 biolink:NamedThing HTT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4855 biolink:NamedThing HDC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4861 biolink:NamedThing HELLS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4867 biolink:NamedThing HERC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4868 biolink:NamedThing HERC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4877 biolink:NamedThing HESX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4878 biolink:NamedThing HEXA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4879 biolink:NamedThing HEXB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4883 biolink:NamedThing CFH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4886 biolink:NamedThing HFE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4887 biolink:NamedThing HJV monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4888 biolink:NamedThing CFHR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4892 biolink:NamedThing HGD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4893 biolink:NamedThing HGF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4908 biolink:NamedThing HIBCH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:491 biolink:NamedThing ANGPTL3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4912 biolink:NamedThing HINT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4913 biolink:NamedThing HIP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:492 biolink:NamedThing ANK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4921 biolink:NamedThing HIVEP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4922 biolink:NamedThing HK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:493 biolink:NamedThing ANK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4931 biolink:NamedThing HLA-A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4932 biolink:NamedThing HLA-B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4933 biolink:NamedThing HLA-C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:494 biolink:NamedThing ANK3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4942 biolink:NamedThing HLA-DQA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4944 biolink:NamedThing HLA-DQB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4948 biolink:NamedThing HLA-DRB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:496 biolink:NamedThing RIPK4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4964 biolink:NamedThing HLA-G monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:497 biolink:NamedThing TRPA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4976 biolink:NamedThing HLCS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4979 biolink:NamedThing MNX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:4982 biolink:NamedThing HMBS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5004 biolink:NamedThing HMGB3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5005 biolink:NamedThing HMGCL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5008 biolink:NamedThing HMGCS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5009 biolink:NamedThing HMGA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5010 biolink:NamedThing HMGA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5012 biolink:NamedThing HMMR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5013 biolink:NamedThing HMOX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5017 biolink:NamedThing HMX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5024 biolink:NamedThing HNF4A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5028 biolink:NamedThing HNMT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5031 biolink:NamedThing HNRNPA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5033 biolink:NamedThing HNRNPA2B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5037 biolink:NamedThing HNRNPDL monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5163 biolink:NamedThing HPS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5166 biolink:NamedThing HPV18I1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5167 biolink:NamedThing HPV18I2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5172 biolink:NamedThing HR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5173 biolink:NamedThing HRAS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5181 biolink:NamedThing HRG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5201 biolink:NamedThing HS6ST1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5208 biolink:NamedThing HSD11B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5209 biolink:NamedThing HSD11B2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5212 biolink:NamedThing HSD17B3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5213 biolink:NamedThing HSD17B4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5218 biolink:NamedThing HSD3B2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5227 biolink:NamedThing HSF4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5228 biolink:NamedThing DNAJB2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5244 biolink:NamedThing HSPA9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:5246 biolink:NamedThing HSPB1 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6171 biolink:NamedThing ITK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6172 biolink:NamedThing STT3A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6174 biolink:NamedThing ITM2B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6176 biolink:NamedThing ITPA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:618 biolink:NamedThing APOL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6180 biolink:NamedThing ITPR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6181 biolink:NamedThing ITPR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6182 biolink:NamedThing ITPR3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6186 biolink:NamedThing IVD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6188 biolink:NamedThing JAG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:619 biolink:NamedThing APOL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6192 biolink:NamedThing JAK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6193 biolink:NamedThing JAK3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:620 biolink:NamedThing APP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6207 biolink:NamedThing JUP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6210 biolink:NamedThing CD82 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6211 biolink:NamedThing ANOS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6215 biolink:NamedThing KARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6217 biolink:NamedThing KATNB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6218 biolink:NamedThing KCNA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6220 biolink:NamedThing KCNA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6224 biolink:NamedThing KCNA5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6231 biolink:NamedThing KCNB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6233 biolink:NamedThing KCNC1 monarch-merged.owl owl:Class 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6283 biolink:NamedThing KCNK9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6284 biolink:NamedThing KCNMA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6293 biolink:NamedThing KCNN4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6294 biolink:NamedThing KCNQ1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6295 biolink:NamedThing KCNQ1OT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6296 biolink:NamedThing KCNQ2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6297 biolink:NamedThing KCNQ3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6298 biolink:NamedThing KCNQ4 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6562 biolink:NamedThing LGALS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6572 biolink:NamedThing LGI1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6584 biolink:NamedThing LHB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6585 biolink:NamedThing LHCGR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6595 biolink:NamedThing LHX3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6597 biolink:NamedThing LIFR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6601 biolink:NamedThing LIG4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6610 biolink:NamedThing LIM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6617 biolink:NamedThing LIPA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6619 biolink:NamedThing LIPC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6621 biolink:NamedThing LIPE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:663 biolink:NamedThing ARG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6631 biolink:NamedThing LMAN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6636 biolink:NamedThing LMNA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6637 biolink:NamedThing LMNB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6638 biolink:NamedThing LMNB2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6649 biolink:NamedThing LMOD3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6654 biolink:NamedThing LMX1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6663 biolink:NamedThing LORICRIN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6664 biolink:NamedThing LOX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6665 biolink:NamedThing LOXL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6677 biolink:NamedThing LPL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6685 biolink:NamedThing LRAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6692 biolink:NamedThing LRP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6694 biolink:NamedThing LRP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6696 biolink:NamedThing LRP4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6697 biolink:NamedThing LRP5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6698 biolink:NamedThing LRP6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:67 biolink:NamedThing ABCD3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6700 biolink:NamedThing LRP8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6701 biolink:NamedThing LRPAP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6708 biolink:NamedThing LSS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6709 biolink:NamedThing LTA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6715 biolink:NamedThing LTBP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6716 biolink:NamedThing LTBP3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6717 biolink:NamedThing LTBP4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6719 biolink:NamedThing LTC4S monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6740 biolink:NamedThing LYZ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6741 biolink:NamedThing LZTFL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6742 biolink:NamedThing LZTR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6758 biolink:NamedThing MAB21L2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6762 biolink:NamedThing MAD1L1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6764 biolink:NamedThing MAD2L2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6769 biolink:NamedThing SMAD3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6770 biolink:NamedThing SMAD4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6772 biolink:NamedThing SMAD6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6773 biolink:NamedThing SMAD7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6774 biolink:NamedThing SMAD9 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6859 biolink:NamedThing MAP3K7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6860 biolink:NamedThing MAP3K8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6882 biolink:NamedThing MAPK8IP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6888 biolink:NamedThing MAPKAPK3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6891 biolink:NamedThing MAPRE2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6893 biolink:NamedThing MAPT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6898 biolink:NamedThing MARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6901 biolink:NamedThing MASP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6902 biolink:NamedThing MASP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6903 biolink:NamedThing MAT1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6909 biolink:NamedThing MATN3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:691 biolink:NamedThing PHOX2A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6912 biolink:NamedThing MATR3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6913 biolink:NamedThing MAX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6922 biolink:NamedThing MBL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6929 biolink:NamedThing MC1R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6930 biolink:NamedThing MC2R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6931 biolink:NamedThing MC3R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6932 biolink:NamedThing MC4R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6936 biolink:NamedThing MCCC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6937 biolink:NamedThing MCCC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6938 biolink:NamedThing CHST6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6944 biolink:NamedThing MCM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6947 biolink:NamedThing MCM4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6949 biolink:NamedThing MCM6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6953 biolink:NamedThing CD46 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6954 biolink:NamedThing MCPH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:697 biolink:NamedThing ARL6IP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6971 biolink:NamedThing MDH2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6973 biolink:NamedThing MDM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6990 biolink:NamedThing MECP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6993 biolink:NamedThing MEF2A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6996 biolink:NamedThing MEF2C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:6998 biolink:NamedThing MEFV monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7 biolink:NamedThing A2M monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7001 biolink:NamedThing MEIS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7010 biolink:NamedThing MEN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7013 biolink:NamedThing MEOX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7027 biolink:NamedThing MERTK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7029 biolink:NamedThing MET monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7045 biolink:NamedThing MGAT2 A protein coding gene MGAT2 in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7060 biolink:NamedThing MGP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7067 biolink:NamedThing CIITA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7095 biolink:NamedThing MID1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7096 biolink:NamedThing MID2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7097 biolink:NamedThing MIF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7102 biolink:NamedThing MINPP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7103 biolink:NamedThing MIP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7104 biolink:NamedThing MIPEP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7105 biolink:NamedThing MITF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7106 biolink:NamedThing ATXN3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7108 biolink:NamedThing MKKS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7114 biolink:NamedThing MKRN3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7121 biolink:NamedThing MKS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7127 biolink:NamedThing MLH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7128 biolink:NamedThing MLH3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:713 biolink:NamedThing ARSA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7132 biolink:NamedThing KMT2A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7133 biolink:NamedThing KMT2D monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:714 biolink:NamedThing ARSB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7146 biolink:NamedThing TRPM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7150 biolink:NamedThing MLYCD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7154 biolink:NamedThing MME monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7155 biolink:NamedThing MMP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7159 biolink:NamedThing MMP13 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7160 biolink:NamedThing MMP14 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7165 biolink:NamedThing MMP19 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7166 biolink:NamedThing MMP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7167 biolink:NamedThing MMP20 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7173 biolink:NamedThing MMP3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7176 biolink:NamedThing MMP9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7179 biolink:NamedThing ALDH6A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7180 biolink:NamedThing MN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:719 biolink:NamedThing ARSL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7190 biolink:NamedThing MOCS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7193 biolink:NamedThing MOCS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7197 biolink:NamedThing MOG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7207 biolink:NamedThing MPDU1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7208 biolink:NamedThing MPDZ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7216 biolink:NamedThing MPI monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7217 biolink:NamedThing MPL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7218 biolink:NamedThing MPO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7224 biolink:NamedThing MPV17 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7225 biolink:NamedThing MPZ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7230 biolink:NamedThing MRE11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7315 biolink:NamedThing MS4A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7316 biolink:NamedThing MS4A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7323 biolink:NamedThing SEPTIN9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7325 biolink:NamedThing MSH2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7326 biolink:NamedThing MSH3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7329 biolink:NamedThing MSH6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:735 biolink:NamedThing ASAH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7372 biolink:NamedThing MSMB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7373 biolink:NamedThing MSN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7376 biolink:NamedThing MSR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:738 biolink:NamedThing ASCL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7381 biolink:NamedThing MST1R monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7391 biolink:NamedThing MSX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7392 biolink:NamedThing MSX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7414 biolink:NamedThing MT-ATP6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7419 biolink:NamedThing MT-CO1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7421 biolink:NamedThing MT-CO2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7422 biolink:NamedThing MT-CO3 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7459 biolink:NamedThing MT-ND4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:746 biolink:NamedThing ASL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7460 biolink:NamedThing MT-ND4L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7461 biolink:NamedThing MT-ND5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7462 biolink:NamedThing MT-ND6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7464 biolink:NamedThing MTNR1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7467 biolink:NamedThing MTTP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7468 biolink:NamedThing MTR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7470 biolink:NamedThing MT-RNR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7473 biolink:NamedThing MTRR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7477 biolink:NamedThing MT-TC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7481 biolink:NamedThing MT-TF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7488 biolink:NamedThing MT-TI monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7489 biolink:NamedThing MT-TK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7490 biolink:NamedThing MT-TL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7493 biolink:NamedThing MT-TN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7494 biolink:NamedThing MT-TP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7495 biolink:NamedThing MT-TQ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7497 biolink:NamedThing MT-TS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7498 biolink:NamedThing MT-TS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7499 biolink:NamedThing MT-TT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7500 biolink:NamedThing MT-TV monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7501 biolink:NamedThing MT-TW monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7508 biolink:NamedThing MUC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7516 biolink:NamedThing MUC5B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7518 biolink:NamedThing MUC7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7523 biolink:NamedThing TRIM37 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7525 biolink:NamedThing MUSK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7526 biolink:NamedThing MMUT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7527 biolink:NamedThing MUTYH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7529 biolink:NamedThing MVD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:753 biolink:NamedThing ASNS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7530 biolink:NamedThing MVK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7534 biolink:NamedThing MXI1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7549 biolink:NamedThing MYBPC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7551 biolink:NamedThing MYBPC3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7553 biolink:NamedThing MYC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7559 biolink:NamedThing MYCN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:756 biolink:NamedThing ASPA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7562 biolink:NamedThing MYD88 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7566 biolink:NamedThing MYF6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7569 biolink:NamedThing MYH11 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:757 biolink:NamedThing ASPH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7572 biolink:NamedThing MYH2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7573 biolink:NamedThing MYH3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7576 biolink:NamedThing MYH6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7577 biolink:NamedThing MYH7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7578 biolink:NamedThing MYH8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7579 biolink:NamedThing MYH9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:758 biolink:NamedThing ASS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7582 biolink:NamedThing MYL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7583 biolink:NamedThing MYL2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7584 biolink:NamedThing MYL3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7585 biolink:NamedThing MYL4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7590 biolink:NamedThing MYLK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7594 biolink:NamedThing MYO15A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7595 biolink:NamedThing MYO1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7599 biolink:NamedThing MYO1E monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7601 biolink:NamedThing MYO3A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7602 biolink:NamedThing MYO5A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7603 biolink:NamedThing MYO5B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7605 biolink:NamedThing MYO6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7606 biolink:NamedThing MYO7A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7609 biolink:NamedThing MYO9B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7610 biolink:NamedThing MYOC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7623 biolink:NamedThing MYT1L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7631 biolink:NamedThing NAGA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7632 biolink:NamedThing NAGLU monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7643 biolink:NamedThing NARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7646 biolink:NamedThing NAT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7652 biolink:NamedThing NBN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7660 biolink:NamedThing NCF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7661 biolink:NamedThing NCF2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7662 biolink:NamedThing NCF4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7671 biolink:NamedThing NCOA4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7675 biolink:NamedThing NDN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7677 biolink:NamedThing NSMCE3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7678 biolink:NamedThing NDP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7679 biolink:NamedThing NDRG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7680 biolink:NamedThing NDST1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7683 biolink:NamedThing NDUFA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7684 biolink:NamedThing NDUFA10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7685 biolink:NamedThing NDUFA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7690 biolink:NamedThing NDUFA6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7693 biolink:NamedThing NDUFA9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7698 biolink:NamedThing NDUFB3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7703 biolink:NamedThing NDUFB8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7704 biolink:NamedThing NDUFB9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7707 biolink:NamedThing NDUFS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7708 biolink:NamedThing NDUFS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7710 biolink:NamedThing NDUFS3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7711 biolink:NamedThing NDUFS4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7713 biolink:NamedThing NDUFS6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7714 biolink:NamedThing NDUFS7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7715 biolink:NamedThing NDUFS8 monarch-merged.owl 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7881 biolink:NamedThing NOTCH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7882 biolink:NamedThing NOTCH2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7883 biolink:NamedThing NOTCH3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7892 biolink:NamedThing PNP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7897 biolink:NamedThing NPC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7905 biolink:NamedThing NPHP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7907 biolink:NamedThing NPHP3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7908 biolink:NamedThing NPHS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:791 biolink:NamedThing ATF6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7939 biolink:NamedThing NPPA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:794 biolink:NamedThing ATIC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7944 biolink:NamedThing NPR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:795 biolink:NamedThing ATM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7960 biolink:NamedThing NR0B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7961 biolink:NamedThing NR0B2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7967 biolink:NamedThing NR1H4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7974 biolink:NamedThing NR2E3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7975 biolink:NamedThing NR2F1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7976 biolink:NamedThing NR2F2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7978 biolink:NamedThing NR3C1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7979 biolink:NamedThing NR3C2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7981 biolink:NamedThing NR4A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7982 biolink:NamedThing NR4A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7983 biolink:NamedThing NR5A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7989 biolink:NamedThing NRAS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:799 biolink:NamedThing ATP1A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:7997 biolink:NamedThing NRG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:800 biolink:NamedThing ATP1A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8002 biolink:NamedThing NRL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8008 biolink:NamedThing NRXN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:801 biolink:NamedThing ATP1A3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8011 biolink:NamedThing CNTNAP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8021 biolink:NamedThing NT5E monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8022 biolink:NamedThing NT5C2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8024 biolink:NamedThing NTF4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8028 biolink:NamedThing NTHL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8031 biolink:NamedThing NTRK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8032 biolink:NamedThing NTRK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:804 biolink:NamedThing ATP1B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8059 biolink:NamedThing NUMA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8063 biolink:NamedThing NUP155 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8064 biolink:NamedThing NUP214 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8066 biolink:NamedThing NUP62 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8067 biolink:NamedThing NUP88 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8079 biolink:NamedThing FRMD7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8082 biolink:NamedThing NYX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8086 biolink:NamedThing OAS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8091 biolink:NamedThing OAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8101 biolink:NamedThing OCA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8104 biolink:NamedThing OCLN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8108 biolink:NamedThing OCRL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8109 biolink:NamedThing ODC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:811 biolink:NamedThing ATP2A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:812 biolink:NamedThing ATP2A2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8124 biolink:NamedThing OGDH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8125 biolink:NamedThing OGG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8133 biolink:NamedThing OLR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8140 biolink:NamedThing OPA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8142 biolink:NamedThing OPA3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8143 biolink:NamedThing OPCML monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8148 biolink:NamedThing OPHN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8149 biolink:NamedThing OPLAH A protein coding gene OPLAH in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:815 biolink:NamedThing ATP2B2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8157 biolink:NamedThing SIGMAR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:823 biolink:NamedThing ATP5F1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:838 biolink:NamedThing ATP5F1E monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:84 biolink:NamedThing ACACA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8487 biolink:NamedThing ORC1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8490 biolink:NamedThing ORC4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8507 biolink:NamedThing OSMR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8512 biolink:NamedThing OTC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8515 biolink:NamedThing OTOF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8516 biolink:NamedThing OTOG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8522 biolink:NamedThing OTX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8527 biolink:NamedThing OXCT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:853 biolink:NamedThing ATP6V1B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8533 biolink:NamedThing P2RX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:854 biolink:NamedThing ATP6V1B2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8547 biolink:NamedThing P4HA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8548 biolink:NamedThing P4HB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8549 biolink:NamedThing BLOC1S6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8565 biolink:NamedThing PABPN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8574 biolink:NamedThing PAFAH1B1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8582 biolink:NamedThing PAH A protein coding gene PAH in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8583 biolink:NamedThing SERPINE1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8592 biolink:NamedThing PAK3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8604 biolink:NamedThing PAPSS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8607 biolink:NamedThing PRKN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8609 biolink:NamedThing PARN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8615 biolink:NamedThing PAX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8616 biolink:NamedThing PAX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8617 biolink:NamedThing PAX3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8618 biolink:NamedThing PAX4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8619 biolink:NamedThing PAX5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8620 biolink:NamedThing PAX6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8621 biolink:NamedThing PAX7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8622 biolink:NamedThing PAX8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8623 biolink:NamedThing PAX9 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8624 biolink:NamedThing PAXIP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8636 biolink:NamedThing PC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8646 biolink:NamedThing PCBD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8653 biolink:NamedThing PCCA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8654 biolink:NamedThing PCCB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:866 biolink:NamedThing ATP6V0A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:868 biolink:NamedThing ATP6AP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:869 biolink:NamedThing ATP7A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:87 biolink:NamedThing ACAD8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:870 biolink:NamedThing ATP7B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8724 biolink:NamedThing PCK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8725 biolink:NamedThing PCK2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8727 biolink:NamedThing PCM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8729 biolink:NamedThing PCNA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8740 biolink:NamedThing CHMP1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8743 biolink:NamedThing PCSK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8754 biolink:NamedThing PCYT1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8761 biolink:NamedThing PDCD10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8768 biolink:NamedThing AIFM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:877 biolink:NamedThing ALDH7A1 monarch-merged.owl 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monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8789 biolink:NamedThing PDE6G monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8790 biolink:NamedThing PDE6H monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8794 biolink:NamedThing PDE8B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8800 biolink:NamedThing PDGFB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8803 biolink:NamedThing PDGFRA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8804 biolink:NamedThing PDGFRB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8805 biolink:NamedThing PDGFRL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8806 biolink:NamedThing PDHA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8808 biolink:NamedThing PDHB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8818 biolink:NamedThing SLC26A4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8819 biolink:NamedThing PDXK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:882 biolink:NamedThing ATR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8820 biolink:NamedThing PDYN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8824 biolink:NamedThing SERPINF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8840 biolink:NamedThing PEPD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8846 biolink:NamedThing PER2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8847 biolink:NamedThing PER3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8850 biolink:NamedThing PEX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8851 biolink:NamedThing PEX10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8853 biolink:NamedThing PEX11B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8854 biolink:NamedThing PEX12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8855 biolink:NamedThing PEX13 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8856 biolink:NamedThing PEX14 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8857 biolink:NamedThing PEX16 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8858 biolink:NamedThing PEX3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8859 biolink:NamedThing PEX6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:886 biolink:NamedThing ATRX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8860 biolink:NamedThing PEX7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8864 biolink:NamedThing CFP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8877 biolink:NamedThing PFKM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:888 biolink:NamedThing KIF1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8881 biolink:NamedThing PFN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8885 biolink:NamedThing PGA3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8889 biolink:NamedThing PGAM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8896 biolink:NamedThing PGK1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:89 biolink:NamedThing ACADM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:890 biolink:NamedThing AUH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8907 biolink:NamedThing PGM3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8910 biolink:NamedThing PGR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8912 biolink:NamedThing PHB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8918 biolink:NamedThing PHEX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8923 biolink:NamedThing PHGDH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8925 biolink:NamedThing PHKA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8926 biolink:NamedThing PHKA2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8927 biolink:NamedThing PHKB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8931 biolink:NamedThing PHKG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:894 biolink:NamedThing AVP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8940 biolink:NamedThing PHYH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8941 biolink:NamedThing SERPINA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8943 biolink:NamedThing SERPINI1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8950 biolink:NamedThing SERPINB6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8952 biolink:NamedThing SERPINB8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8957 biolink:NamedThing PIGA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8959 biolink:NamedThing PIGB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8965 biolink:NamedThing PIGK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8966 biolink:NamedThing PIGL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8967 biolink:NamedThing PIGN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:897 biolink:NamedThing AVPR2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8975 biolink:NamedThing PIK3CA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8977 biolink:NamedThing PIK3CD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8979 biolink:NamedThing PIK3R1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8980 biolink:NamedThing PIK3R2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8983 biolink:NamedThing PI4KA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8996 biolink:NamedThing PIP5K1C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8999 biolink:NamedThing PISD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:90 biolink:NamedThing ACADS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9004 biolink:NamedThing PITX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9005 biolink:NamedThing PITX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9006 biolink:NamedThing PITX3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9008 biolink:NamedThing PKD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9009 biolink:NamedThing PKD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9016 biolink:NamedThing PKHD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9020 biolink:NamedThing PKLR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9023 biolink:NamedThing PKP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9024 biolink:NamedThing PKP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:903 biolink:NamedThing AXIN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9038 biolink:NamedThing PLA2G5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9039 biolink:NamedThing PLA2G6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:904 biolink:NamedThing AXIN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9040 biolink:NamedThing PLA2G7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9045 biolink:NamedThing PLAG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9046 biolink:NamedThing PLAGL1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:905 biolink:NamedThing AXL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9051 biolink:NamedThing PLAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9052 biolink:NamedThing PLAU monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9059 biolink:NamedThing PLCB4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9060 biolink:NamedThing PLCD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9066 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biolink:NamedThing PLOD2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9083 biolink:NamedThing PLOD3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9086 biolink:NamedThing PLP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:91 biolink:NamedThing ACADSB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9115 biolink:NamedThing PMM2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9117 biolink:NamedThing PMP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9118 biolink:NamedThing PMP22 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9121 biolink:NamedThing PMS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9122 biolink:NamedThing PMS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:914 biolink:NamedThing B2M monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9141 biolink:NamedThing PMVK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9142 biolink:NamedThing PRRX1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9143 biolink:NamedThing PHOX2B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9153 biolink:NamedThing PNKD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9154 biolink:NamedThing PNKP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9155 biolink:NamedThing PNLIP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9173 biolink:NamedThing POLA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9175 biolink:NamedThing POLD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9177 biolink:NamedThing POLE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9179 biolink:NamedThing POLG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9180 biolink:NamedThing POLG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9181 biolink:NamedThing POLH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:92 biolink:NamedThing ACADVL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9201 biolink:NamedThing POMC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9202 biolink:NamedThing POMT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9204 biolink:NamedThing PON1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9208 biolink:NamedThing POR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9210 biolink:NamedThing POU1F1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9217 biolink:NamedThing POU3F4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9220 biolink:NamedThing POU4F3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:923 biolink:NamedThing B3GAT3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9236 biolink:NamedThing PPARG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:924 biolink:NamedThing B4GALT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9251 biolink:NamedThing CTSA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9255 biolink:NamedThing PPIB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9277 biolink:NamedThing PPM1D monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9279 biolink:NamedThing PDP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9280 biolink:NamedThing PPOX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9291 biolink:NamedThing PPP1R3A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:93 biolink:NamedThing ACAT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:930 biolink:NamedThing B4GALT7 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9302 biolink:NamedThing PPP2R1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9303 biolink:NamedThing PPP2R1B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9305 biolink:NamedThing PPP2R2B monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9312 biolink:NamedThing PPP2R5D monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:932 biolink:NamedThing BAAT monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9325 biolink:NamedThing PPT1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9330 biolink:NamedThing PQBP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9343 biolink:NamedThing PRCC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9349 biolink:NamedThing PRDM5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9350 biolink:NamedThing PRDM6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9359 biolink:NamedThing SLC26A5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9360 biolink:NamedThing PRF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9364 biolink:NamedThing PRG4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9380 biolink:NamedThing PRKACA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9382 biolink:NamedThing PRKACG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9386 biolink:NamedThing PRKAG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9388 biolink:NamedThing PRKAR1A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:939 biolink:NamedThing BAG3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9399 biolink:NamedThing PRKCD monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:94 biolink:NamedThing ACAT2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9402 biolink:NamedThing PRKCG monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9403 biolink:NamedThing PRKCH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9411 biolink:NamedThing PRKCSH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9413 biolink:NamedThing PRKDC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9414 biolink:NamedThing PRKG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9438 biolink:NamedThing PRKRA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9439 biolink:NamedThing DNAJC3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9446 biolink:NamedThing PRLR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9449 biolink:NamedThing PRNP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9451 biolink:NamedThing PROC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9453 biolink:NamedThing PRODH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9454 biolink:NamedThing PROM1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9455 biolink:NamedThing PROP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9456 biolink:NamedThing PROS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9457 biolink:NamedThing PLPBP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9460 biolink:NamedThing PROZ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9461 biolink:NamedThing PRPH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9462 biolink:NamedThing PRPS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9475 biolink:NamedThing PRSS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9476 biolink:NamedThing HTRA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9477 biolink:NamedThing PRSS12 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9479 biolink:NamedThing LONP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9483 biolink:NamedThing PRSS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9490 biolink:NamedThing TMPRSS15 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9498 biolink:NamedThing PSAP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:95 biolink:NamedThing SLC33A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:950 biolink:NamedThing BAP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9508 biolink:NamedThing PSEN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9509 biolink:NamedThing PSEN2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:951 biolink:NamedThing NKX3-2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:952 biolink:NamedThing BARD1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9535 biolink:NamedThing PSMA6 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9545 biolink:NamedThing PSMB8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9577 biolink:NamedThing PSPH monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9580 biolink:NamedThing PSTPIP1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9585 biolink:NamedThing PTCH1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9586 biolink:NamedThing PTCH2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9587 biolink:NamedThing PTDSS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9588 biolink:NamedThing PTEN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9591 biolink:NamedThing PTGDR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9594 biolink:NamedThing PTGER2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9603 biolink:NamedThing PTGIS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9606 biolink:NamedThing PTH A protein coding gene PTH in 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https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9666 biolink:NamedThing PTPRC monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:967 biolink:NamedThing BBS2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9670 biolink:NamedThing PTPRF monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9678 biolink:NamedThing PTPRO monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9679 biolink:NamedThing PTPRQ monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9685 biolink:NamedThing PTPRZ1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9688 biolink:NamedThing CAVIN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9689 biolink:NamedThing PTS monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:969 biolink:NamedThing BBS4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:970 biolink:NamedThing BBS5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9701 biolink:NamedThing PURA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9706 biolink:NamedThing NECTIN1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9713 biolink:NamedThing PEX19 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9717 biolink:NamedThing PEX2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9719 biolink:NamedThing PEX5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9721 biolink:NamedThing PYCR1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9722 biolink:NamedThing ALDH18A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9725 biolink:NamedThing PYGL monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9726 biolink:NamedThing PYGM monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9751 biolink:NamedThing QARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9752 biolink:NamedThing QDPR monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9766 biolink:NamedThing RAB27A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9768 biolink:NamedThing RAB28 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9788 biolink:NamedThing RAB7A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9802 biolink:NamedThing RAC2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9811 biolink:NamedThing RAD21 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9816 biolink:NamedThing RAD50 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9817 biolink:NamedThing RAD51 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9820 biolink:NamedThing RAD51C monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9823 biolink:NamedThing RAD51D monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9826 biolink:NamedThing RAD54L monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9829 biolink:NamedThing RAF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9831 biolink:NamedThing RAG1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9832 biolink:NamedThing RAG2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9834 biolink:NamedThing RAI1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9848 biolink:NamedThing RANBP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:986 biolink:NamedThing BCKDHA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9863 biolink:NamedThing RAPSN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9864 biolink:NamedThing RARA monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9865 biolink:NamedThing RARB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:987 biolink:NamedThing BCKDHB monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9870 biolink:NamedThing RARS1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9871 biolink:NamedThing RASA1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9879 biolink:NamedThing RASGRP2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9882 biolink:NamedThing RASSF1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9884 biolink:NamedThing RB1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:989 biolink:NamedThing BCL10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9891 biolink:NamedThing RBBP8 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9896 biolink:NamedThing RBM10 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9905 biolink:NamedThing RBM8A monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9910 biolink:NamedThing RBMX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9912 biolink:NamedThing RBMY1A1 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9921 biolink:NamedThing RBP3 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9922 biolink:NamedThing RBP4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9936 biolink:NamedThing OPN1LW monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9940 biolink:NamedThing RDH5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9942 biolink:NamedThing PRPH2 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9944 biolink:NamedThing RDX monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9949 biolink:NamedThing RECQL4 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9957 biolink:NamedThing RELN monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9958 biolink:NamedThing REN A protein coding gene REN in human. monarch-merged.owl Category=external. gene owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9965 biolink:NamedThing RERE monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9966 biolink:NamedThing REST monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9967 biolink:NamedThing RET monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9986 biolink:NamedThing RFX5 monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9987 biolink:NamedThing RFXANK monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9988 biolink:NamedThing RFXAP monarch-merged.owl owl:Class https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9990 biolink:NamedThing RGR monarch-merged.owl owl:Class OBO:FlyBase_FBgn0004652 biolink:NamedThing fruitless monarch-merged.owl owl:Class OBO:FlyBase_FBgn0010433 biolink:NamedThing atonal monarch-merged.owl owl:Class GENO:0000047 biolink:NamedThing danio rerio gene A gene that originates from the genome of a danio rerio. monarch-merged.owl owl:Class GENO:0000054 biolink:NamedThing homo sapiens gene A gene that originates from the genome of a homo sapiens. monarch-merged.owl owl:Class GENO:0000057 biolink:NamedThing mus musculus gene A gene that originates from the genome of a mus musculus. monarch-merged.owl owl:Class GENO:0000502 biolink:NamedThing wild-type gene monarch-merged.owl wild-type gene allele A gene allele representing the most common varaint in a population (typically >99% frequency), that exhibits canonical function, and against which rare and/or non-functional mutant gene alleles are compared in characterizing the phenotypic consequences of genetic variation. owl:Class SO:0000087 biolink:NamedThing nuclear_gene A gene from nuclear sequence. monarch-merged.owl nuclear gene http://en.wikipedia.org/wiki/Nuclear_gene sequence owl:Class SO:0000088 biolink:NamedThing mt_gene A gene located in mitochondrial sequence. monarch-merged.owl mt gene|mitochondrial gene http://en.wikipedia.org/wiki/Mitochondrial_gene sequence owl:Class SO:0000090 biolink:NamedThing plastid_gene A gene from plastid sequence. monarch-merged.owl plastid gene sequence owl:Class SO:0000097 biolink:NamedThing nucleomorph_gene A gene from nucleomorph sequence. monarch-merged.owl nucleomorph gene sequence owl:Class SO:0000098 biolink:NamedThing plasmid_gene A gene from plasmid sequence. monarch-merged.owl plasmid gene sequence owl:Class SO:0000099 biolink:NamedThing proviral_gene A gene from proviral sequence. monarch-merged.owl proviral gene sequence owl:Class SO:0000111 biolink:NamedThing transposable_element_gene A gene encoded within a transposable element. For example gag, int, env and pol are the transposable element genes of the TY element in yeast. monarch-merged.owl transposable element gene sequence owl:Class SO:0000127 biolink:NamedThing silenced_gene A gene that is silenced. monarch-merged.owl silenced gene sequence owl:Class SO:0000280 biolink:NamedThing engineered_gene A gene that is engineered. monarch-merged.owl engineered gene sequence owl:Class SO:0000281 biolink:NamedThing engineered_foreign_gene A gene that is engineered and foreign. monarch-merged.owl engineered foreign gene See here for a list of engineered regions in ZFIN: http://zfin.org/cgi-bin/webdriver?MIval=aa-markerselect.apg&marker_type=REGION&query_results=t&compare=contains&WINSIZE=25. Includes things like loxP sites, inducible promoters, ires elements, etc. sequence owl:Class SO:0000285 biolink:NamedThing foreign_gene A gene that is foreign. monarch-merged.owl foreign gene sequence owl:Class SO:0000287 biolink:NamedThing fusion_gene A gene that is a fusion. monarch-merged.owl fusion gene http://en.wikipedia.org/wiki/Fusion_gene sequence owl:Class SO:0000456 biolink:NamedThing recombinationally_rearranged_gene A gene that is recombinationally rearranged. monarch-merged.owl recombinationally rearranged gene sequence owl:Class SO:0000459 biolink:NamedThing gene_with_trans_spliced_transcript A gene with a transcript that is trans-spliced. monarch-merged.owl gene with trans spliced transcript sequence owl:Class SO:0000690 biolink:NamedThing gene_with_polycistronic_transcript A gene that encodes a polycistronic transcript. monarch-merged.owl gene with polycistronic transcript sequence owl:Class SO:0000816 biolink:NamedThing rescue_gene A gene that rescues. monarch-merged.owl rescue gene sequence owl:Class SO:0000890 biolink:NamedThing post_translationally_regulated_gene A gene that is post translationally regulated. monarch-merged.owl post translationally regulated gene sequence owl:Class SO:0000891 biolink:NamedThing negatively_autoregulated_gene A gene that is negatively autoreguated. monarch-merged.owl negatively autoregulated gene sequence owl:Class SO:0000892 biolink:NamedThing positively_autoregulated_gene A gene that is positively autoregulated. monarch-merged.owl positively autoregulated gene sequence owl:Class SO:0000896 biolink:NamedThing translationally_regulated_gene A gene that is translationally regulated. monarch-merged.owl translationally regulated gene sequence owl:Class SO:0000898 biolink:NamedThing epigenetically_modified_gene A gene that is epigenetically modified. monarch-merged.owl epigenetically modified gene sequence owl:Class SO:0000902 biolink:NamedThing transgene A transgene is a gene that has been transferred naturally or by any of a number of genetic engineering techniques from one organism to another.|A gene that has been transferred naturally or by any of a number of genetic engineering techniques into a cell or organism where it is foreign (i.e. does not belong to the host genome). monarch-merged.owl http://en.wikipedia.org/wiki/Transgene On the relationship between 'transgenic insertions', 'transgenes', and 'alleles' Transgenic insertions are sequence alterations comprised of foreign/exogenous sequence. This sequence can be from the same or different species as the host cell or genome - it is exogenous in virtue of it being additional sequence inserted into the original host genome. A given transgenic insertion may create one or more transgenes when introduced into a host genome. The extent of a transgene is spans all features needed to drive its expression in the host genome. In most cases a transgenic insertion completely contains one or more transgenes that are fully competent to drive expression in the host genome. But in some cases, a transgenic insertion may carry only part of the final transgene it creates - which requires additional endogenous sequences in the vicinity of its insertion site to complete a functional gene (e.g. this is the case for enhancer traps or gene traps) to complete. In addition to the transgenes they create upon genomic integration, transgenic insertions can create variant alleles by disrupting a known endogenous gene/locus. Variant alleles are versions of a particular genomic features (typically genes), that are altered in their sequence relative to some reference. An insertion that disrupts an endogenous gene would be considered a 'sequence alteration' (sensu SO) which creates a 'variant gene allele'. From the perspective of this disrupted gene, the origin or transgenic nature of this insertion is irrelevant - what matters here is that the gene's sequence has been altered to create an allele. For the purposes of modeling, any transgene(s) created when an endogenous gene is interrupted by an insertion is considered/modeled separately from the allele of the endogenous gene that is created by the insertion. The transgenic insertion, which is simply a sequence alteration in the host genome, is then linked to any transgenes that it contributes to or overlaps with or contains. The model of the Flybase example HERE illustrates this approach.|Transgenes can exist as integrated into the host genome, or extra-chromosomally on replicons or transiently carried/expressed vectors. What matters is that they are active in the context of a foreign biological system (typically a cell or organism). Note that transgenes as defined here are not necessarily from a different taxon than that of the host genome. For example, a Mus musculus gene over-expressed from a chromosomally-integrated expression construct in a Mus musculus genome qualifies as a transgene because it is exogenous to the host genome. sequence owl:Class SO:0000996 biolink:NamedThing predicted_gene A region of the genome that has been predicted to be a gene but has not been confirmed by laboratory experiments. monarch-merged.owl predicted gene This term is mapped to MGED. Do not obsolete without consulting MGED ontology. sequence owl:Class SO:0001217 biolink:NamedThing protein_coding_gene A gene that codes for an RNA that can be translated into a protein. monarch-merged.owl protein coding gene sequence owl:Class SO:0001219 biolink:NamedThing retrogene A gene that has been produced as the product of a reverse transcriptase mediated event. monarch-merged.owl sequence owl:Class SO:0001263 biolink:NamedThing ncRNA_gene A gene that encodes a non-coding RNA. monarch-merged.owl non-coding RNA gene|ncRNA gene sequence owl:Class SO:0001431 biolink:NamedThing cryptic_gene A gene that is not transcribed under normal conditions and is not critical to normal cellular functioning. monarch-merged.owl cryptic gene sequence owl:Class SO:0001739 biolink:NamedThing gene_with_non_canonical_start_codon A gene with a start codon other than AUG. monarch-merged.owl gene with non canonical start codon Requested by flybase, Dec 2010. kareneilbeck 2011-01-10T01:30:31Z sequence owl:Class SO:0001867 biolink:NamedThing candidate_gene A gene suspected of being involved in the expression of a trait. monarch-merged.owl candidate gene|target gene Requested by Bayer Cropscience December, 2011. kareneilbeck 2012-01-17T02:53:03Z sequence owl:Class SO:0002121 biolink:NamedThing vertebrate_immune_system_gene The configuration of the IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci). monarch-merged.owl immune_gene These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. nicole 2016-08-23T15:54:51Z sequence owl:Class SO:0005853 biolink:NamedThing gene_cassette A gene that can be substituted for a related gene at a different site in the genome. monarch-merged.owl gene cassette http://en.wikipedia.org/wiki/Gene_cassette This would include, for example, the mating type gene cassettes of S. cerevisiae. Gene cassettes usually exist as linear sequences as part of a larger DNA molecule, such as a chromosome or plasmid. sequence owl:Class OBO:APOLLO_SV_00000008 biolink:NamedThing software development A planned process that has specified output a software product and that involves the creation of source code. monarch-merged.owl http://en.wikipedia.org/wiki/Software_development A planned process resulting in a software product involving the creation of source code. William R. Hogan|Mathias Brochhausen owl:Class OBI:0000011 biolink:NamedThing planned process A processual entity that realizes a plan which is the concretization of a plan specification.|A process that realizes a plan which is the concretization of a plan specification.|A processual entity that realizes a plan which is the concretization of a plan specification. monarch-merged.owl 6/11/9: Edited at workshop. Used to include: is initiated by an agent|This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call) branch derived 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)|Stub class to serve as root of hierarchy for experimental techniques and processes, defined in GENO or imported from ontologies such as OBI and ERO. planned process Injecting mice with a vaccine in order to test its efficacy Bjoern Peters owl:Class OBO:APOLLO_SV_00000033 biolink:NamedThing counting The planned process of finding the number of elements in a finite set of objects. monarch-merged.owl http://en.wikipedia.org/wiki/Counting The planned process of finding the number of elements in a finite set of objects. Mathias Brochhausen owl:Class OBO:APOLLO_SV_00000796 biolink:NamedThing dataset creating A planned process that has a data set as its specified output. monarch-merged.owl dataset creation|data set creation creating a data set William R. Hogan owl:Class ENVO:01000993 biolink:NamedThing manufacturing process A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation. monarch-merged.owl owl:Class ENVO:01000996 biolink:NamedThing human-directed construction process An process during which natural or manufactured materials and products are processed and arranged by humans or their technology into structures. monarch-merged.owl owl:Class ENVO:02500026 biolink:NamedThing anthropogenic modulatory intervention process A process during which humans apply technology to alter the magnitude, duration, rate, or impact of an environmental process. monarch-merged.owl owl:Class IAO:0000443 biolink:NamedThing data item extraction from journal article A planned process in which journal articles are read or processed and data items are extracted, typically for further analysis or indexing monarch-merged.owl Person:Alan Ruttenberg owl:Class IAO:0000444 biolink:NamedThing publishing process A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free. monarch-merged.owl VEuPathDB https://en.wikipedia.org/wiki/Publishing Person: Jie Zheng owl:Class IAO:0000572 biolink:NamedThing documenting A planned process in which a document is created or added to by including the specified input in it. monarch-merged.owl wikipedia http://en.wikipedia.org/wiki/Documenting 6/11/9: Edited at OBI workshop. We need to be able identify a child form of information artifact which corresponds to something enduring (not brain like). This used to be restricted to physical document or digital entity as the output, but that excludes e.g. an audio cassette tape Recording the current temperature in a laboratory notebook. Writing a journal article. Updating a patient record in a database. Bjoern Peters owl:Class IAO:0000574 biolink:NamedThing assigning a centrally registered identifier A planned process in which a new CRID is created, associated with an entity, and stored in the CRID registry thereby registering it as being associated with some entity monarch-merged.owl assigning a CRID 2014-05-05: It is the CRID registry that assigns CRIDs, not the users of the registry. A new pubmed ID being created for a journal article, and the associated pubmed record containing information to the journal article. A license plate number registered at the DMV to be belonging to a specific vehicle and owner. Placing a barcode on a product and entering information in a database that this barcode is assigned. Person:Alan Ruttenberg|Person:Bjoern Peters|Person:Melanie Courtot owl:Class IAO:0000575 biolink:NamedThing associating information with a centrally registered identifier in its registry A planned process in which a CRID registry associates an information content entity with a CRID symbol monarch-merged.owl associating information with a CRID in the CRID registry Articles in Pubmed are reviewed by curators who add MESH terms to the Pubmed records in order to categorize them better and improve the ability to search for them. PERSON:Alan Ruttenberg owl:Class IAO:0000580 biolink:NamedThing looking up a centrally registered identifier A planned process in which a request to a CRID registry is made to return the information associated with a CRID symbol monarch-merged.owl looking up a CRID Going to the PubMed website and entering a PubMed ID in order to retrieve the Pubmed information associated with that ID. PERSON: Melanie Courtot|PERSON: Bill Hogan|PERSON: Bjoern Peters|PERSON: Alan Ruttenberg owl:Class IAO:0000650 biolink:NamedThing database extract, transform, and load process A planned process which takes as input a database and fills another database by extracting concretizations of information entities from the first, transforming them, and loading the transformed concretizations into the second. monarch-merged.owl ETL WEB:https://en.wikipedia.org/wiki/Extract,_transform,_load Alan Ruttenberg 12/21/16: Maybe this definition instead: A planned process which takes as input a database and copies concretizations from the first, optionally transforms then copies the result to the second|Alan Ruttenberg 12/21/16: We don't define database in IAO, currently, as the bare word is ambiguous. Reasonable interpretations of the word might be the material entity, an information structure, an information content entity. However this definition commits, at least, to there being some material thing which bear concretizations of information entities and that there are new concretizations created during the process. We consider the ETL process in terms of information entities rather than the concretizations. No committment is made as to whether the specified output. database extract, transform, and load process PERSON:Alan Ruttenberg owl:Class OBI:0000066 biolink:NamedThing investigation a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).|a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s). monarch-merged.owl investigation owl:Class OBI:0000070 biolink:NamedThing assay A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies. monarch-merged.owl owl:Class OBI:0000094 biolink:NamedThing material processing A planned process which results in physical changes in a specified input material monarch-merged.owl owl:Class OBI:0000471 biolink:NamedThing study design execution a planned process that carries out a study design monarch-merged.owl study design execution owl:Class OBI:0000659 biolink:NamedThing specimen collection process A planned process with the objective of collecting a specimen. monarch-merged.owl owl:Class OBI:0000807 biolink:NamedThing presentation of stimulus a planned process in which an organism is exposed to some stimulus with the intent to invoke an action monarch-merged.owl owl:Class OBI:0000838 biolink:NamedThing material maintenance a process with that achieves the objective to maintain some or all of the characteristics of an input material over time monarch-merged.owl owl:Class OBI:0000931 biolink:NamedThing study intervention the part of the execution of an intervention design study which is varied between two or more subjects in the study monarch-merged.owl owl:Class OBI:0001007 biolink:NamedThing image creation A planned process that captures an image of an object. monarch-merged.owl owl:Class OBI:0200000 biolink:NamedThing data transformation A planned process that produces output data from input data. monarch-merged.owl data transformation owl:Class SEPIO:0000003 biolink:NamedThing assertion process An act of interpreting evidence to make an assertion of belief that a particular proposition is true monarch-merged.owl act of assertion An assertion process includes the processes of interpreting data and evaluating it as evidence for the validity of a proposition. They are affected by a particular agents on a particular occasions, and can be specified by assertion methods or guidelines. Mappings to terms from related models: Likely equivalent to http://purl.org/see/rdo#act_of_inference. May be equivalent to http://purl.obolibrary.org/obo/ECO_0000217 ! assertion method. owl:Class SEPIO:0000004 biolink:NamedThing research activity A planned process executed in the performance of scientific research wherein systematic investigations are performed to establish facts and reach new conclusions about phenomena in the world. monarch-merged.owl Data generation process are typically experimental studies or observations, but can include any process generating information used to evaluate a claim. This is an organizational class that groups more specific types of such processes that are most commonly used in generating data used as evidence to support claims. These processes produce informational artifacts such as measured data values, derived statistical calculations and confidence measures, or statements representing summaries or conclusions drawn from such data. owl:Class SEPIO:0000158 biolink:NamedThing contribution The actions taken by a particular agent in the creation, modification, assessment, or deprecation of an artifact. monarch-merged.owl Contribution instances organize information about who, when, where, how (e.g. what roles were played), and on whose behalf these actions were performed. The scope of a Contribution instance includes only the actions of a single agent in contributing to a particular artifact - which may be performed in one continuous effort, or multiple discrete sessions of work. The contributing agent can be a single individual, or an organization of multiple individuals acting together. This concept is similar in meaning and usage to PROV:Attribution. Consider aligning or adopting. owl:Class OBO:APOLLO_SV_00000032 biolink:NamedThing count A measurement datum that is the output of counting. monarch-merged.owl A measurement datum that is the output of counting. Mathias Brochhausen owl:Class IAO:0000109 biolink:NamedThing measurement datum A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device. monarch-merged.owl group:OBI|OBI_0000305 2/2/2009 is_specified_output of some assay? measurement datum Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}. person:Chris Stoeckert owl:Class IAO:0000032 biolink:NamedThing scalar measurement datum A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.|a scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label. monarch-merged.owl Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them.|2009-03-16: we decided to keep datum singular in scalar measurement datum, as in this case we explicitly refer to the singular form 10 feet. 3 ml. PERSON: Alan Ruttenberg|PERSON: Melanie Courtot owl:Class IAO:0000582 biolink:NamedThing time stamped measurement datum monarch-merged.owl owl:Class OBI:0000789 biolink:NamedThing survival rate A measurement data that represents the percentage of people or animals in a study or treatment group who are alive for a given period of time after diagnosis or initiation of monitoring. monarch-merged.owl owl:Class OBI:0001155 biolink:NamedThing 3D structural organization datum A measurement datum that describes the structural orientation of a material entity in 3D space. monarch-merged.owl owl:Class SEPIO:0000133 biolink:NamedThing evidence strength A data item that quantifies the degree of support an agent believes an evidence line to provide for a particular proposition. monarch-merged.owl Consider also framing as categorical measurement values?: A categorical measurement reflecting an agent's cognitive quantification of the degree of support (s)he believes an evidence line to provide for a particular proposition. The strength of a line of evidence typically depends on the *type* and *quality* of the study(ies) that generate its supporting evidence items. 1. Type of Study: In a particular domain of research, certain types of studies are commonly held to produce data that is more meaningful and reliable than others, as evidence for a particular type of assertion. These more reliable studies tend to draw on experimental systems that more accurately replicate the natural phenomenon being studied, and experimental designs that reduce confounding variables and biases. For example, in vivo studies of gene function provide stronger evidence than in vitro systems that may not replicate all aspects of the biology of a living system, and randomized controlled clinical trials are held to be more reliable than retrospective or case control studies that are more susceptible to confounding factors. 2. Quality of Study: A given study can be performed to varying degrees of rigor and comprehensiveness, irrespective of the type of study it represents. This is another important factor in assessing the overall strength of evidence it may produce. Higher quality studies will have carefully defined controls, and be replicated numerous times to ensure reproducibility. Other factors that are often used as secondary indicators of the quality of research data include the quality of the journal in which it is published, and the reputation of the lab or institution performing the study. In SEPIO, the notion of evidence quality is captured in an attribute separate from the notion of evidence strength. And the notion of study type can be represented in the type assigned to a study instance, or the evidence code used to type an evidence line (which are often based on the type of study that produced the evidence data). Evidence strength typically relies on assessment of one or both of these more fundamental attributes of evidence. owl:Class SEPIO:0000187 biolink:NamedThing confidence level A data item that quantifies the level of confidence an agent has that a particular piece of information is true. monarch-merged.owl owl:Class SEPIO:0000402 biolink:NamedThing evidence direction A data item that indicates an agent's assessment of whether an evidence line supports or disputes a target proposition (or represents inconclusive evidence that is not sufficient for either). monarch-merged.owl Consider also treating this as an attribute/quality of an evidence line: An attribute of an evidence line describing whether it supports or disputes a target proposition (or represents inconclusive evidence that is not sufficient for either). owl:Class SEPIO:0000414 biolink:NamedThing evidence quality A data item that indicates the quality of the data used as evidence by an agent making an assertion. monarch-merged.owl The quality of an evidence item is a measure of the rigor applied in performing the study and anlysis tasks used to produce it. Higher quality studies will have carefully defined controls, and be replicated numerous times to ensure reproducibility. Other factors that are often used as secondary indicators of the quality of research data include the quality of the journal in which it is published, and the reputation of the lab or institution performing the study. Evidence qualitty is an important factor in assessing the overall strength of evidence it may produce. owl:Class STATO:0000047 biolink:NamedThing count a count is a data item denoted by an integer and represented the number of instances or occurences of an entity monarch-merged.owl STATO a count of 4 resulting from counting limbs in humans Orlaith Burke|Alejandra Gonzalez-Beltran|Philippe Rocca-Serra owl:Class OBO:APOLLO_SV_00000522 biolink:NamedThing source code repository A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc. monarch-merged.owl Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based software source code version control repository William R. Hogan owl:Class IAO:0000310 biolink:NamedThing document A collection of information content entities intended to be understood together as a whole monarch-merged.owl document A journal article, patent application, laboratory notebook, or a book PERSON: Lawrence Hunter owl:Class IAO:0000088 biolink:NamedThing report A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record).|a document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record) monarch-merged.owl OBI_0000099|GROUP: OBI 2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.|2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'document'. Alan restored as there are OBI dependencies and this merits further discussion|disagreement about where reports go. alan: only some gene lists are reports. Is a report all the content of some document? The example of usage suggests that a report may be part of some article. Term needs clarification|2009-03-16: comment from Darren Natale: I am slightly uneasy with the sentence "Topic of the report is on something that has completed." Should it be restricted to those things that are completed? For example, a progress report is (usually) about something that definitely has *not* been completed, or may include (only) projections. I think the definition would not suffer if the whole sentence is deleted.|2009-03-16: this was report of results with definition: A report is a narrative object that is a formal statement of the results of an investigation, or of any matter on which definite information is required, made by some person or body instructed or required to do so. report Examples of reports are gene lists and investigation reports. These are not published (journal) articles but may be included in a journal article. PERSON: Chris Stoeckert|PERSON:Chris Stoeckert|PERSON: Alan Ruttenberg|PERSON: Melanie Courtot owl:Class IAO:0000311 biolink:NamedThing publication A document that is the output of a publishing process.|A document that has been accepted by a publisher monarch-merged.owl published document Revisit the term in Octorber 2020. Improve the defintion. publication A journal article or book|journal article, newspaper story, book, etc. PERSON: Jie Zheng|PERSON: Chris Stoeckert|PERSON: Lawrence Hunter owl:Class IAO:0000313 biolink:NamedThing patent A document that has been accepted by a patent authority monarch-merged.owl patent US Patent 6,449,603 PERSON: Lawrence Hunter owl:Class IAO:0000445 biolink:NamedThing document in preparation for publication A document that is in preparation for submission to be published. monarch-merged.owl VEuPathDB EFO_0001795 in preparation PERSON: Jie Zheng owl:Class SEPIO:000383 biolink:NamedThing record A document containing a collection of data or statements about some entity. monarch-merged.owl http://semanticscience.org/resource/SIO_000088 ! 'record' 'Record' here is broadly defined to include any document holding (typically) structured information about a particular entity. This can include individual records from a database or knowledgebase that hold information about the subject of the record. Specific examples include: - A single row of a table in a relational database. - A JSON or XML document holding information describing some entity. - A VCF File describing varaints in a patient, or a single row in this VCF file describinng a particular variant. - A Uniprot knowldgebase record describing the BRCA2 protein (http://www.uniprot.org/uniprot/P51587) - A ClinVar knwoledgebase record describing an assertion about the pathogenicity of the NM_000059.3(BRCA2):c.10G>T variant (https://www.ncbi.nlm.nih.gov/clinvar/variation/51063/) - An EHR record for a hospital patient. owl:Class OBO:APOLLO_SV_00000524 biolink:NamedThing compiling software A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions. monarch-merged.owl It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).|Source code can be automatically generated to some extent, but we're assuming humans still curate it minimally. Also, in the case of Java and its JVM, it's machine interpretable instructions, not directly executable. Ditto for other languages with intermediate form like Java byte code. process of compiling software William R. Hogan owl:Class BFO:0000002 biolink:NamedThing continuant An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.|An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. monarch-merged.owl Continuant continuant Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants|BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240 continuant A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002]) (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] |(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] |(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] |(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])|if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])|if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001]) owl:Class BFO:0000003 biolink:NamedThing occurrent An entity that has temporal parts and that happens, unfolds or develops through time.|An entity that has temporal parts and that happens, unfolds or develops through time. monarch-merged.owl Occurrent occurrent Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.|BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region|Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.|BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players. An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002]) (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] |(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])|b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001]) owl:Class SEPIO:0000000 biolink:NamedThing proposition An abstract entity representing the sharable meaning of what is expressed in a particular assertion. monarch-merged.owl The notion of a proposition, and its relationship to an assertion, derives from the domain of logic and philosophy [12]. Propositions are abstract entities that, like numbers, are independent of space and time. They represent only the meaning that is expressed in a particular agent’s assertion, and are ‘sharable’ in that the same proposition can be expressed in many different assertions. Propositions are primary bearers of truth value, in that they are true or false. From http://plato.stanford.edu/entries/propositions/: "Propositions are the sharable objects of the attitudes and the primary bearers of truth and falsity. This stipulation rules out certain candidates for propositions, including thought- and utterance-tokens, which presumably are not sharable, and concrete events or facts, which presumably cannot be false." http://plato.stanford.edu/entries/propositions In the SEPIO model, an assertion is akin to an act in speech or text that expresses beleif in the truth of a proposition. It is the proposition that represents the semantic content of a claim, and bears truth value. Mappings to terms from related models: 1. http://purl.org/see/rdo#proposition A SEPIO proposition is equivalent to a 'proposition' from the Semantic EvidencE framework. "The class rdo:proposition represents propositions i.e. the sharable objects of propositional attitudes like belief or desire and the bearers of truth values. As truth bearers they are either true or false. They are taken to represent the semantic content of sentences or larger lexical entities formulated in some natural or artificial language.") 2. http://purl.org/mp/Holotype The notion of a holotype from the Micropublications model is related to a SPEIO proposition - in that it represents a statement that is selcted to all other statements expressing the same meaning. 3. http://purl.org/oban/association An OBAN proposition is a more type of proposition, that is structured/expressed according to the specifications laid out in the OBAN ontology. The proposition that BRCA1:2685T>A causes familial breast cancer. owl:Class BFO:0000004 biolink:NamedThing independent continuant b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])|A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.|b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])|A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. monarch-merged.owl IndependentContinuant ic independent continuant a molecule|the interior of your mouth|a leg|a spatial region|a chair|an atom|a heart|an organism|the bottom right portion of a human torso|an orchestra. (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] |(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] |(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])|For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002]) owl:Class BFO:0000020 biolink:NamedThing specifically dependent continuant b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])|b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])|A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. monarch-merged.owl SpecificallyDependentContinuant sdc Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc. specifically dependent continuant the smell of this portion of mozzarella|the pink color of a medium rare piece of grilled filet mignon at its center|of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.|the role of being a doctor|Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key|the shape of this hole.|the disposition of this fish to decay|of one-sided specifically dependent continuants: the mass of this tomato|the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction|the mutual dependence of proton donors and acceptors in chemical reactions [79|the function of this heart: to pump blood (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004] |(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] owl:Class BFO:0000031 biolink:NamedThing generically dependent continuant b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])|A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. monarch-merged.owl GenericallyDependentContinuant gdc the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.|The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.|the pdf file on your laptop, the pdf file that is a copy thereof on my laptop (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] owl:Class PO:0000055 biolink:NamedThing bud An undeveloped shoot system (PO:0009006). monarch-merged.owl yema (Spanish, exact)|芽 (Japanese, exact)|adventitious bud (narrow) owl:Class PO:0000423 biolink:NamedThing plant zygote A native plant cell (PO:0025606) which is a whole plant (PO:0000003) in the plant zygote stage (PO:0001097). monarch-merged.owl zygote (broad)|植物接合子、接合体 (Japanese, exact)|cigoto (Spanish, exact) owl:Class PO:0025025 biolink:NamedThing root system A collective plant organ structure (PO:0025007) that produces root meristems (PO:0006085), the plant structures (PO:0009011) that arise from them and the parts thereof. monarch-merged.owl sistema de raíz (Spanish, exact)|root (broad)|根系 (Japanese, exact) owl:Class PO:0025082 biolink:NamedThing reproductive shoot system A shoot system (PO:0009006) in the sporophytic phase that has as part at least one sporangium (PO:0025094). monarch-merged.owl sistema de brote reproductivo (Spanish, exact)|生殖シュート 系、苗条系 (Japanese, exact) rwalls 2010-09-17T09:49:10Z plant_anatomy owl:Class PO:0025094 biolink:NamedThing sporangium A plant organ (PO:0009008) in which plant spores (PO:0025017) are produced. monarch-merged.owl esporangio (Spanish, exact)|胞子嚢 (Japanese, exact)|moss capsule (exact)|spore capsule (exact)|sporangia (exact, plural)|spore case (exact) owl:Class prov:Agent biolink:NamedThing Agent An agent is something that bears some form of responsibility for an activity taking place, for the existence of an entity, or for another agent's activity. monarch-merged.owl Agents typically persons, organizations, or software that perform tasks, including making assertions, or generating information used as evidence. In the execution of such tasks, an 'agent role' is realized that inheres in the agent. prov:Agent is considered equivalent to foaf:Agent (http://xmlns.com/foaf/0.1/Agent ) Def = "The Agent class is the class of agents; things that do stuff. A well known sub-class is Person, representing people. Other kinds of agents include Organization and Group." owl:Class BFO:0000006 biolink:NamedThing spatial region monarch-merged.owl SpatialRegion s-region BFO 2 Reference: Spatial regions do not participate in processes.|Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional. A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001]) (forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] |(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001]) owl:Class BFO:0000141 biolink:NamedThing immaterial entity monarch-merged.owl ImmaterialEntity immaterial BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10 owl:Class BFO:0000029 biolink:NamedThing site monarch-merged.owl Site site b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002]) the lumen of your gut|the interior of the trunk of your car|Manhattan Canyon)|the cockpit of an aircraft|your left nostril (a fiat part – the opening – of your left nasal cavity)|a hole in the interior of a portion of cheese|an air traffic control region defined in the airspace above an airport|the Piazza San Marco|the interior of a kangaroo pouch|the Grand Canyon|the hold of a ship|a rabbit hole|the interior of your office|the interior of your refrigerator|the interior of your bedroom (forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] owl:Class BFO:0000140 biolink:NamedThing continuant fiat boundary b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001]) monarch-merged.owl ContinuantFiatBoundary cf-boundary BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29|Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.|BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions. (iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] Every continuant fiat boundary is located at some spatial region at every time at which it exists owl:Class OBO:CARO_0000007 biolink:NamedThing immaterial anatomical entity An anatomical entity that has no mass.|Anatomical entity that has no mass. monarch-merged.owl spatial owl:Class UBERON:0000466 biolink:NamedThing immaterial anatomical entity Anatomical entity that has no mass. monarch-merged.owl immaterial physical anatomical entity TAO:0001835|EHDAA2:0003007|HAO:0000007|TGMA:0001827|BILA:0000007|VHOG:0001727|AAO:0010265|FBbt:00007015|AEO:0000007|CARO:0000007|FMA:67112 uberon owl:Class BFO:0000008 biolink:NamedThing temporal region monarch-merged.owl TemporalRegion t-region Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001]) (forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] |(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] |(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])|Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002]) owl:Class BFO:0000011 biolink:NamedThing spatiotemporal region monarch-merged.owl SpatiotemporalRegion st-region A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001]) the spatiotemporal region occupied by the development of a cancer tumor|the spatiotemporal region occupied by a process of cellular meiosis.|the spatiotemporal region occupied by a human life (forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] |(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] |(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] |(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] |(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])|All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])|Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])|Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])|Every spatiotemporal region occupies_spatiotemporal_region itself. owl:Class BFO:0000015 biolink:NamedThing process p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])|An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.|An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.|p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) monarch-merged.owl Process process BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war) a process of meiosis|the life of an organism|the flight of a bird|your process of aging.|a process of sleeping|the course of a disease|a process of cell-division, \ a beating of the heart (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] owl:Class BFO:0000035 biolink:NamedThing process boundary p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]) monarch-merged.owl ProcessBoundary p-boundary the boundary between the 2nd and 3rd year of your life. (forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] |(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002]) owl:Class OBO:FBdv_00000000 biolink:NamedThing Drosophila life The life of an individual of the species Drosophila melanogaster, from fertilization to death. monarch-merged.owl Drosophila life cycle FBdv_root:00000000 FlyBase_development_CV owl:Class OBO:FBdv_00005259 biolink:NamedThing developmental stage A temporal subdivision of a developmental process. monarch-merged.owl djs93 2009-10-01T05:56:56Z FBdv:00007010 FlyBase_development_CV owl:Class OBO:FBdv_00007013 biolink:NamedThing age Temporal subdivision of life based on time elapsed since some key developmental transition, such as fertilization, hatching or eclosion. monarch-merged.owl djs93 2010-09-29T12:25:36Z FlyBase_development_CV owl:Class OBO:FBdv_00007024 biolink:NamedThing biological process monarch-merged.owl GO:0008150 FlyBase_development_CV owl:Class PO:0007033 biolink:NamedThing whole plant development stage A plant structure development stage (PO:0009012) that has as primary participant a whole plant (PO:0000003). monarch-merged.owl cereal plant growth stage ontology (GRO:0007199) (related)|sorghum growth stage (GRO:0007124) (related)|maize growth stage (GRO:0007002) (related)|rice growth stage (GRO:0007040) (related)|wheat, barley and oat growth stage (GRO:0007156) (related)|plant growth stages in Arabidopsis (TAIR:0000021) (related)|Solanaceae whole plant growth stages (SGN:0000001) (related) owl:Class PO:0009012 biolink:NamedThing plant structure development stage A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes. monarch-merged.owl etapa de desarrollo de estructura vegetal (Spanish, exact)|plant growth and development stage (exact)|Arabidopsis growth (related) PO_GIT:185 Refers to GO:0032502 'developmental process', which includes growth, differentiation, and senescence, and BFO:0000003 'ocurrent'. PO:0007021 plant_structure_development_stage owl:Class PO:0025338 biolink:NamedThing collective plant organ structure development stage A plant structure development stage (PO:0009012) that has as primary participant a collective plant structure (PO:0025497). monarch-merged.owl etapa de desarrollo de una estructura colectiva de la planta (Spanish, exact)|集合的植物構造の発生過程 (Japanese, exact) PO_GIT:391 Includes flower development stage (PO:0007615), corolla development stage (PO:0007604), and inflorescence development stage (PO:0001083). rwalls 2011-10-19T11:12:49Z plant_structure_development_stage owl:Class UBERON:0000000 biolink:NamedThing processual entity An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity. monarch-merged.owl uberon owl:Class UBERON:0000066 biolink:NamedThing fully formed stage The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both sexually immature stage, and adult stage. monarch-merged.owl adult stage|fully formed animal stage|juvenile-adult stage BilaDO:0000004|FBdv:00005369|BTO:0001043|XtroDO:0000084|EFO:0001272|WBls:0000041 uberon https://github.com/obophenotype/uberon/issues/566 owl:Class UBERON:0000068 biolink:NamedThing embryo stage A life cycle stage that starts with fertilization and ends with the fully formed embryo. monarch-merged.owl embryogenesis|embryonic stage FMA:72652|OGES:000022|OGES:000000|WBls:0000003|HsapDv:0000002|XAO:1000012|WBls:0000102|EV:0300001|BilaDO:0000002|MmusDv:0000002|SCTID:296280003|WBls:0000092|FBdv:00005289 uberon owl:Class UBERON:0000071 biolink:NamedThing death stage End of the life of an organism. monarch-merged.owl death XAO:0000437|XtroDO:0000085 uberon owl:Class ncit:Death is an outcome UBERON:0000092 biolink:NamedThing post-embryonic stage stage succeeding embryo, including mature structure|Stage succeeding embryo, including mature structure. monarch-merged.owl postembryonic|post-hatching stage|postembryonic stage BilaDO:0000003|OGES:000010|WBls:0000103|WBls:0000022|OGES:000014|OGES:000024|WBls:0000093 uberon https://github.com/obophenotype/uberon/issues/344 owl:Class In birds, the postnatal stage begins when the beak penetrates the shell (i.e., external pipping) (Brown et al. 1997) UBERON:0000106 biolink:NamedThing zygote stage A stage at which the organism is a single cell produced by means of sexual reproduction. monarch-merged.owl fertilized egg stage|zygotum|one-cell stage|zygote|one cell stage|1-cell stage XAO:1000001|Wikipedia:Zygote|VHOG:0000745|BilaDO:0000005|BILS:0000106|PdumDv:0000100|EFO:0001322|ZFS:0000001|FBdv:00005288|EHDAA:27|NCIT:C12601 uberon owl:Class As in all metazoans, eumetazoan development begins with a fertilized egg, or zygote.[well established][VHOG] UBERON:0000107 biolink:NamedThing cleavage stage The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula. monarch-merged.owl FBdv:00000054|BILS:0000107|OGES:000015|MmusDv:0000004|OGES:000020|PdumDv:0000200|EFO:0001290|XAO:1000004|ZFS:0000046|BilaDO:0000006|MESH:A16.254.270|Wikipedia:Cleavage_(embryo) uberon owl:Class UBERON:0000108 biolink:NamedThing blastula stage An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence. monarch-merged.owl BilaDO:0000007|EFO:0001282|OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg|BILS:0000108|OGES:000016|HsapDv:0000006|XAO:1000003|Wikipedia:Blastula|ZFS:0000045|OGES:000003|MmusDv:0000007|WBls:0000005|OGES:000021 http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png consider adding a preceding stage 'morula stage' as part of cleavage uberon owl:Class UBERON:0000109 biolink:NamedThing gastrula stage A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm. monarch-merged.owl trilaminar disk stage|trilaminar blastoderm stage|trilaminar stage|blastocystis trilaminaris stage|trilaminar blastocyst stage|trilaminar germ stage BilaDO:0000008|BILS:0000109|ZFS:0000047|MmusDv:0000013|FBdv:00005317|OGES:000019|WBls:0000010|OGES:000004|XAO:1000005|HsapDv:0000010|EFO:0001296 uberon owl:Class UBERON:0000110 biolink:NamedThing neurula stage Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system. monarch-merged.owl BILS:0000110|BilaDO:0000009|HsapDv:0000012|MmusDv:0000017|XAO:1000006 uberon https://github.com/obophenotype/uberon/issues/343 owl:Class UBERON:0000111 biolink:NamedThing organogenesis stage A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism. monarch-merged.owl segmentation stage OGES:000005|Wikipedia:Organogenesis|BilaDO:0000010|HsapDv:0000015|OGES:000032|BILS:0000111|MmusDv:0000018 uberon https://github.com/obophenotype/uberon/issues/533 owl:Class OBO:WBls_0000006 biolink:NamedThing 1-cell embryo Ce Also called zygote. -50min till 0min of first cleavage at 20 Centigrade. Contains 1 cell. monarch-merged.owl fertilized egg|1-cell embryo worm_development owl:Class OBO:WBls_0000010 biolink:NamedThing gastrulating embryo Ce The C. elegans life stage spanning 100-290min after first cleavage at 20 Centigrade. Proliferate from 28 cells to 421 cells. Referring to the whole period of gastrulation. monarch-merged.owl gastrulating embryo worm_development owl:Class OBO:WBls_0000013 biolink:NamedThing enclosing embryo Ce The C. elegans life stage spanning 290-350min after first cleavage at 20 Centigrade. Proliferate from 421 cells to 560 cells. The stage when embryo just finished gastrulation and is enclosing. monarch-merged.owl enclosing embryo worm_development owl:Class OBO:WBls_0000014 biolink:NamedThing late cleavage stage embryo Ce The C. elegans life stage spanning 210-350min after first cleavage at 20 Centigrade. Proliferate from 421 cells to 560 cells. The stage before the fast cleavage of cells finishes. monarch-merged.owl late cleavage stage embryo worm_development owl:Class OBO:WBls_0000015 biolink:NamedThing elongating embryo Ce The C. elegans life stage spanning 350-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The stage that embryo starts elongation until elongation is over. monarch-merged.owl elongating embryo|mid embryo worm_development owl:Class OBO:WBls_0000016 biolink:NamedThing bean embryo Ce The C. elegans life stage spanning 350-390min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. Emrbyo elongation started but have not formed comma shape yet. The shape of embryo looks like a lima bean. A stage right before comma embryo. Also called lima embryo or lima bean stage. monarch-merged.owl bean embryo worm_development owl:Class OBO:WBls_0000017 biolink:NamedThing comma embryo Ce The C. elegans life stage spanning 390-420min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo looks like a comma. A stage between bean embryo and 1.5-fold embryo. monarch-merged.owl comma embryo worm_development owl:Class OBO:WBls_0000018 biolink:NamedThing 1.5-fold embryo Ce The C. elegans life stage spanning 420-460min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and fold back 50%. A stage between comma embryo and 2-fold embryo. monarch-merged.owl 1.5-fold embryo worm_development owl:Class OBO:WBls_0000019 biolink:NamedThing 2-fold embryo Ce The C. elegans life stage spanning 460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo. monarch-merged.owl 2-fold embryo worm_development owl:Class OBO:WBls_0000020 biolink:NamedThing 3-fold embryo Ce The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. monarch-merged.owl 3-fold embryo worm_development owl:Class OBO:WBls_0000021 biolink:NamedThing fully-elongated embryo Ce The C. elegans life stage spanning 620-800min(hatch) after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. A stage after elongation is over. The last stage of embryogenesis. Also called pre-hatched embryo, late embryo or morphogenetic embryo. monarch-merged.owl late embryo|morphogenetic stage|pre-hatched embryo|fully-elongated embryo worm_development owl:Class OBO:WBls_0000022 biolink:NamedThing postembryonic Ce A developemental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until death. monarch-merged.owl postembryonic worm_development owl:Class OBO:WBls_0000023 biolink:NamedThing larva Ce A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. monarch-merged.owl larva worm_development owl:Class OBO:WBls_0000024 biolink:NamedThing L1 larva Ce The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. monarch-merged.owl L1 larva worm_development owl:Class OBO:WBls_0000026 biolink:NamedThing L1-L2 molt Ce The stage when an animal shifts from L1 larva to L2 larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle. monarch-merged.owl L1-L2 molt worm_development owl:Class OBO:WBls_0000029 biolink:NamedThing L2-L3 molt Ce The stage when an animal shifts from L2 larva to L3 larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle. monarch-merged.owl L2-L3 molt worm_development owl:Class OBO:WBls_0000032 biolink:NamedThing dauer larva Ce A third stage larva specialized for dispersal and long term survival. monarch-merged.owl dauer larva worm_development owl:Class OBO:WBls_0000037 biolink:NamedThing L3-L4 molt Ce The stage when an animal shifts from L3 larva to L4 larva. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle. monarch-merged.owl L3-L4 molt worm_development owl:Class OBO:WBls_0000040 biolink:NamedThing L4-adult molt Ce The stage when an animal shifts from L4 larva to adult. It includes the synthesis of new cuticle, cease of phrayngeal pumping during a lethargus stage, and the shed off of old cuticle. monarch-merged.owl L4-adult molt worm_development owl:Class OBO:WBls_0000104 biolink:NamedThing nematode adult The nematode life-stage that begins when the organism is fully-developed and has reached maturity. monarch-merged.owl L5|adult nematode danielaraciti 2013-11-25T06:18:53Z worm_development owl:Class OBO:WBls_0000107 biolink:NamedThing L2 larval stage The second stage larva of nematodes. monarch-merged.owl L2 larva nematode danielaraciti 2013-11-25T06:20:54Z worm_development owl:Class OBO:WBls_0000108 biolink:NamedThing L3 larval stage The third stage larva of nematodes. monarch-merged.owl L3 larva nematode danielaraciti 2013-11-25T06:21:33Z worm_development owl:Class OBO:WBls_0000109 biolink:NamedThing L4 larval stage The fourth stage larva of nematodes. monarch-merged.owl L4 larva nematode danielaraciti 2013-11-25T06:22:48Z worm_development owl:Class BFO:0000009 biolink:NamedThing two-dimensional spatial region monarch-merged.owl TwoDimensionalSpatialRegion 2d-s-region A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001]) the surface of a sphere-shaped part of space|an infinitely thin plane in space. (forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] owl:Class BFO:0000018 biolink:NamedThing zero-dimensional spatial region monarch-merged.owl ZeroDimensionalSpatialRegion 0d-s-region A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001]) (forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] owl:Class BFO:0000026 biolink:NamedThing one-dimensional spatial region monarch-merged.owl OneDimensionalSpatialRegion 1d-s-region A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001]) an edge of a cube-shaped portion of space. (forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] owl:Class BFO:0000028 biolink:NamedThing three-dimensional spatial region monarch-merged.owl ThreeDimensionalSpatialRegion 3d-s-region A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001]) a cube-shaped region of space|a sphere-shaped region of space, (forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] owl:Class BFO:0000016 biolink:NamedThing disposition monarch-merged.owl Disposition disposition BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type [89|BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type. b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002]) the cell wall is disposed to filter chemicals in endocitosis and exocitosis|an atom of element X has the disposition to decay to an atom of element Y|children are innately disposed to categorize objects in certain ways.|certain people have a predisposition to colon cancer|the cell wall is disposed to filter chemicals in endocytosis and exocytosis (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] |(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002]) owl:Class BFO:0000017 biolink:NamedThing realizable entity A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. monarch-merged.owl RealizableEntity realizable To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002]) the disposition of your blood to coagulate|the disposition of this piece of metal to conduct electricity.|the function of your reproductive organs|the role of being a doctor|the role of this boundary to delineate where Utah and Colorado meet (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] |(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002]) https://orcid.org/0000-0001-8815-0078 owl:Class BFO:0000023 biolink:NamedThing role A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. monarch-merged.owl Role role BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives. b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])|b is a role means: b is a realizable entity and b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be and b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001]) the role of a building in serving as a military target|the student role|the role of a stone in marking a property boundary|the role of a boundary to demarcate two neighboring administrative territories|the role of subject in a clinical trial|the priest role|John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married. (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] owl:Class CHEBI:50906 biolink:NamedThing role A role is particular behaviour which a material entity may exhibit. monarch-merged.owl chebi_ontology owl:Class BFO:0000019 biolink:NamedThing quality monarch-merged.owl Quality quality a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001]) the shape of your nostril|the color of a tomato|the shape of your nose|the ambient temperature of this portion of air|the length of the circumference of your waist|the mass of this piece of gold. (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] |(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001]) bfo owl:Class FBcv:0000347 biolink:NamedThing phenotypic class monarch-merged.owl phenotypic_class owl:Class GENO:0000788 biolink:NamedThing sequence feature attribute An attribute, quality, or state of a sequence feature or collection. monarch-merged.owl http://purl.obolibrary.org/obo/SO_0000400 Sequence feature attributes can be 'intrinsic' - reflecting feature-level characteristics that depend only on the sequence, location, or genomic context of a feature or collection, or 'extrinsic' - reflecting characteristics of the physical molecule in which the feature is concretized (e.g. its cellular context, source of origin, physical appearance, etc.). Intrinsic attributes include things like allelic state, allelic phase. Extrinsic attributes include things like its cellular distribution and chromosomal band intensity. owl:Class OBO:MF_0000030 biolink:NamedThing representation A dependent continuant which is about a portion of reality. monarch-merged.owl http://www.jbiomedsem.com/content/1/1/10 owl:Class PATO:0000001 biolink:NamedThing quality A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.|A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities monarch-merged.owl trait quality (PATO) PATO:0000072 quality owl:Class UPHENO:0001001 biolink:NamedThing Phenotype monarch-merged.owl 1. From OGMS: A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species (from OGMS, and used in OBI, but treatment as a quality is at odds with previous OBI discussions and their treatemnt of 'comparative phenotype assessment, where a phenotype is described as a quality or disposition) 2. From OBI calls: quality or disposition inheres in organism or part of an organism towards some growth environment Stub node that gathers root classes from various taxon-specific phenotype ontologies, as connectors to bringing classes from these ontolgies into the GENO framework. owl:Class BFO:0000024 biolink:NamedThing fiat object part monarch-merged.owl FiatObjectPart fiat-object-part BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004]) the division of the brain into regions|the upper and lower lobes of the left lung|the Western hemisphere of the Earth|the dorsal and ventral surfaces of the body|the FMA:regional parts of an intact human body.|the division of the planet into hemispheres|or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29 (forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] bfo owl:Class BFO:0000040 biolink:NamedThing material entity An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. monarch-merged.owl MaterialEntity material BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.|BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60|BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here. material entity A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002]) an energy wave|a photon|a flame|a human being|the undetached arm of a human being|a sea wave|a hurricane|a puff of smoke|a tornado|an aggregate of human beings.|an epidemic|a forest fire (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] |(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] |(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])|every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002]) bfo owl:Class BFO:0000027 biolink:NamedThing object aggregate monarch-merged.owl ObjectAggregate object-aggregate ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158. BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).|An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004]) an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)|defined via attributive delimitations such as: the patients in this hospital|a symphony orchestra|defined by fiat: the aggregate of members of an organization|defined through physical attachment: the aggregate of atoms in a lump of granite|the nitrogen atoms in the atmosphere|the aggregate of blood cells in your body|the restaurants in Palo Alto|a collection of cells in a blood biobank.|defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container|a swarm of bees is an aggregate of members who are linked together through natural bonds|the aggregate of bearings in a constant velocity axle joint|your collection of Meissen ceramic plates. (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] owl:Class BFO:0000030 biolink:NamedThing object monarch-merged.owl Object object BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47|BFO 2 Reference: an object is a maximal causally unified material entity|BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.|BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).|BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74 b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001]) solid portions of matter|planet|molecule|star|atom|organism|organelle|cells and organisms|grain of sand|engineered artifacts|cell bfo owl:Class OBO:CARO_0000006 biolink:NamedThing material anatomical entity An anatomical entity that has mass. monarch-merged.owl spatial owl:Class OBO:CARO_0001010 biolink:NamedThing organism or virus or viroid Material anatomical entity that is a member of an individual species or is a viral or viroid particle. monarch-merged.owl organism or virus Melissa Haendel 9/18/11 Melissa Haendel owl:Class CHEBI:23367 biolink:NamedThing molecular entity Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity. monarch-merged.owl molecular entities|molekulare Entitaet|entidad molecular|molecular entity|entidades moleculares|entite moleculaire Stub class to serve as root of hierarchy for imports of molecular entities from ChEBI ontology. chebi_ontology owl:Class CHEBI:24431 biolink:NamedThing chemical entity A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. monarch-merged.owl chemical entity chebi_ontology owl:Class CHEBI:33250 biolink:NamedThing atom A chemical entity constituting the smallest component of an element having the chemical properties of the element. monarch-merged.owl atome|atomus|element|atoms|atomo|atom|elements CHEBI:22671|CHEBI:23907 chebi_ontology owl:Class CHEBI:36342 biolink:NamedThing subatomic particle A particle smaller than an atom. monarch-merged.owl subatomic particles Wikipedia:Subatomic_particle chebi_ontology owl:Class CL:0000000 biolink:NamedThing cell type A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. monarch-merged.owl CALOHA:TS-2035|KUPO:0000002|GO:0005623|VHOG:0001533|XAO:0003012|FMA:68646|WBbt:0004017 The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).|Stub class to serve as root of hierarchy for imports of cell types from CL or other cell terminologies. cell PMID:18089833.Cancer Res. 2007 Dec 15;67(24):12018-25. "...Epithelial cells were harvested from histologically confirmed adenocarcinomas .." cell EFO_URI: http://www.ebi.ac.uk/efo/EFO_0000324 owl:Class ENVO:00000131 biolink:NamedThing glacial feature A hydrographic feature characterized by the dominance of snow or ice. monarch-merged.owl Ice|glacer|LandIce|glacial landform|glacier feature owl:Class ENVO:00003074 biolink:NamedThing manufactured product A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products. monarch-merged.owl manufactured good owl:Class ENVO:01000254 biolink:NamedThing environmental system A system which has the disposition to environ one or more material entities. monarch-merged.owl environment In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised. 1. Stub class to serve as root of hierarchy for imports from an ontology of environment and experimental conditions. 2. Need to consdier how to model environments in a way that covers ENVO and XCO content in a consistent and coherent way. A couple classes under Exploratory Class are relvant here. Consider how we might approach environments/condisitons using an EQ aproach analogous to how phenotypes are defined (i.e. consider environments/coonditions as qualities inhereing in some entity). owl:Class ENVO:01000281 biolink:NamedThing layer A layer is a quantity of some material which is spatially continuous, has comparable thickness, and usually covers some surface. monarch-merged.owl owl:Class ENVO:01000744 biolink:NamedThing human dwelling A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning. monarch-merged.owl See https://github.com/EnvironmentOntology/envo/issues/264 for discussion. This definition needs a lot of clean up and links to household and related classes must be made to form logical definitions for inference to work.|Subclasses will be added by inference. owl:Class ENVO:01001369 biolink:NamedThing tidal mangrove shrubland A shrubland biome which is densely vegetated by dwarf or short mangroves (and associates) that are generally less than 6 meters in height, is tidally influenced, is located in tropical or subtropical areas. monarch-merged.owl https://cmecscatalog.org/cmecs/classification/unit/577.html This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions. CMECS provides the following notes: "Commonly found on intertidal mud flats along the shores of estuaries. Tidal mangrove shrublands may include immature stands or stunted mature trees that indicate a harsh growing environment. Areas characterized by tall mangroves (> 6 meters) are placed in the Tidal Mangrove Forest Biotic Group. Where tidal amplitude is relatively low, the vegetation forms narrow bands along the coastal plains, and it rarely penetrates inland more than several kilometers along rivers. Where tidal amplitude is greater, mangroves extend further inland along river courses, forming extensive stands in the major river deltas. Also, mangrove cays may occur within the lagoon complex of barrier reefs. The list of biotic communities for this group is long: a few examples are provided below, and the complete list is available in Appendix F" CMECS:577 envoMarine|envoCmecs owl:Class ENVO:01001813 biolink:NamedThing construction A material entity which has been assembled through the intentional, instinctual, or deliberately programmed efforts of an organism or machine. monarch-merged.owl owl:Class OBO:FBbt_00005155 biolink:NamedThing Drosophila sense organ Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system. monarch-merged.owl sense organ (drosophila) VFB:FBbt_00005155 fly_anatomy.ontology owl:Class OBO:FBbt_00007692 biolink:NamedThing Drosophila sensory system An anatomical system consisting of all of the anatomical entities that function in some part of the sensory perception. monarch-merged.owl sensory system (drosophila) Note - the relationship of this class to the nervous system is overlap. This allows for sense organ components that function in the transduction of sensory signals but that are not considered to be part of the nervous system to be part of sensory systems. fly_anatomy.ontology owl:Class FOODON:03420116 biolink:NamedThing part of organism Anatomical part of the plant or animal from which a food product or its major ingredient is derived. monarch-merged.owl owl:Class FOODON:03510136 biolink:NamedThing food consumer group A food consumer group is a class of organism based on their heterotrophic requirements or preferences. monarch-merged.owl owl:Class GENO:0000108 biolink:NamedThing material genome A material entity that represents all genetic material in a cell or virion. The material genome is typically molecular aggregate of all the chromosomal DNA and epi-chromosomal DNA that represents all sequences that are heritable by progeny of a cell or virion. monarch-merged.owl physical genome A genome is the collection of all nucleic acids in a cell or virus, representing all of an organism's hereditary information. It is typically DNA, but many viruses have RNA genomes. The genome includes both nuclear chromosomes (ie nuclear and micronucleus chromosomes) and cytoplasmic chromosomes stored in various organelles (e.g. mitochondrial or chloroplast chromosomes), and can in addition contain non-chromosomal elements such as replicative viruses, plasmids, and transposable elements. Note that at present, a material genome and genetic material are necessarily part of some cell or virion. So a genomic library is not considered a material genome/genetic material - rather, we could say that this genomic library is a 'genomic material sample' that bears the concretization of some SO:genome. owl:Class GENO:0000904 biolink:NamedThing organismal entity A material entity that is an organism, derived from an organism, or composed of organisms (e.g. a cell line, biosample, tissue culture, population, etc). monarch-merged.owl True useful organizational term to collect entities that have genomes/genotypes. owl:Class GO:0005575 biolink:NamedThing cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome).|The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. monarch-merged.owl cell or subcellular entity|cellular component|subcellular entity NIF_Subcellular:sao1337158144 Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.|Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. GO:0008372 cellular_component owl:Class IAO:0000178 biolink:NamedThing material information bearer A material entity in which a concretization of an information content entity inheres. monarch-merged.owl material information bearer a hard drive|a brain|A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier. GROUP: IAO owl:Class IDO:0000586 biolink:NamedThing infection A part of an extended organism that itself has as part a population of one or more infectious agents and that (1) exists as a result of processes initiated by members of the infectious agent population and is (2) clinically abnormal in virtue of the presence of this infectious agent population, or (3) has a disposition to bring clinical abnormality to immunocompetent organisms of the same Species as the host (the organism corresponding to the extended organism) through transmission of a member or offspring of a member of the infectious agent population. monarch-merged.owl owl:Class OBI:0000047 biolink:NamedThing processed material Is a material entity that is created or changed during material processing. monarch-merged.owl owl:Class OBI:0000245 biolink:NamedThing organization An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members. monarch-merged.owl owl:Class OBI:0000427 biolink:NamedThing enzyme (protein or rna) or has_part (protein or rna) and has_function some GO:0003824 (catalytic activity) monarch-merged.owl owl:Class OBI:0000576 biolink:NamedThing scattered molecular aggregate a material entity that consists of all the molecules of a specific type that are located in some bounded region and which is part of a more massive material entity that has parts that are other such aggregates monarch-merged.owl owl:Class OBI:0000997 biolink:NamedThing growth environment The collection of material entities and their qualities that are located near a live organism, tissue or cell and can influence its growth. monarch-merged.owl owl:Class OBI:0002076 biolink:NamedThing collection of specimens A material entity that has two or more specimens as its parts. monarch-merged.owl owl:Class OBI:0100026 biolink:NamedThing organism A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. monarch-merged.owl Category=external. WEB: http://en.wikipedia.org/wiki/Organism Stub class to serve as root of hierarchy for imports from NCBI Taxonomy. organism obi owl:Class OBI:0100051 biolink:NamedThing specimen A material entity that has the specimen role. monarch-merged.owl owl:Class OBI:0302729 biolink:NamedThing chemical solution A material entity that is made up of at least 2 scattered molecular aggregates, one playing the role of solvent and the other one playing the role of solute. monarch-merged.owl owl:Class OBI:1110001 biolink:NamedThing epitope a material entity bearing the epitope role monarch-merged.owl owl:Class OBI:1110034 biolink:NamedThing antigen is a material entity that has the antigen role monarch-merged.owl owl:Class OBI:1110108 biolink:NamedThing material to be added a material that is added to another one in a material combination process monarch-merged.owl owl:Class OBI:1110109 biolink:NamedThing target of material addition A material entity into which another is being added in a material combinatino process monarch-merged.owl owl:Class OGMS:0000087 biolink:NamedThing extended organism monarch-merged.owl From OGMS: http://purl.obolibrary.org/obo/OGMS_0000087 owl:Class PCO:0000031 biolink:NamedThing organismal entity A material entity that is one or more organisms, viruses or viroids. monarch-merged.owl owl:Class PO:0025074 biolink:NamedThing embryo sac A megagametophyte (PO:0025279) that is located in a plant ovary ovule (PO:0025490). monarch-merged.owl saco embrionario (Spanish, exact)|胚嚢 (Japanese, exact) owl:Class PO:0025131 biolink:NamedThing plant anatomical entity An anatomical entity that is or was part of a plant. monarch-merged.owl entidad anatómica vegetal (Spanish, exact)|植物 解剖学（形態）的実体 (Japanese, exact) PO_GIT:224 Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'. rwalls 2010-11-15T11:41:38Z plant_anatomy owl:Class PO:0025281 biolink:NamedThing pollen A microgametophyte (PO:0025280) that develops from a microspore (PO:0020048) is located in a pollen sac (PO:0025277). monarch-merged.owl pollen grain (exact)|polen (Spanish, exact)|花粉 (Japanese, exact) owl:Class RO:0002577 biolink:NamedThing system A material entity consisting of multiple components that are causally integrated. monarch-merged.owl http://www.jbiomedsem.com/content/4/1/43 May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43 Chris Mungall owl:Class UBERON:0000465 biolink:NamedThing material anatomical entity Anatomical entity that has mass. monarch-merged.owl FMA:67165|EHDAA2:0003006|AEO:0000006|HAO:0000006|TGMA:0001826|BILA:0000006|AAO:0010264|CARO:0000006|VHOG:0001721|TAO:0001836|FBbt:00007016 uberon owl:Class UBERON:0000468 biolink:NamedThing multicellular organism Anatomical structure that is an individual member of a species and consists of more than one cell. monarch-merged.owl multi-cellular organism|Koerper|whole body|animal|body|organism|whole organism EHDAA2:0003191|WBbt:0007833|EV:0100016|SCTID:243928005|XAO:0003004|EHDAA2:0003103|BSA:0000038|ZFA:0001094|NCIT:C13041|AAO:0010026|TADS:0000001|VHOG:0000671|EFO:0002906|TGMA:0001832|HAO:0000012|BILA:0000012|FMA:256135|EMAPA:25765|ncithesaurus:Whole_Organism|BTO:0000042|BIRNLEX:18|EHDAA:1|Wikipedia:Multi-cellular_organism|TAO:0001094|AEO:0000191|FBbt:00000001|CARO:0000012|galen:Organism TODO - split body and mc organism? body continues after death stage uberon owl:Class organismal UBERON:0000477 biolink:NamedThing anatomical cluster Anatomical group that has its parts adjacent to one another. monarch-merged.owl BILA:0000041|TGMA:0001842|AAO:0010009|FMA:49443|ZFA:0001478|VHOG:0001737|XAO:0003160|AEO:0000041|EHDAA2:0003041|HAO:0000041|CARO:0000041|FBbt:00007277|TADS:0000605|TAO:0001478 Will be obsoleted in CARO v2 [https://github.com/obophenotype/caro/issues/3] uberon owl:Class UBERON:0001058 biolink:NamedThing mushroom body Prominent lobed neuropils found in annelids and all arthropods except crustaceans. They are thought to be involved in olfactory associative learning and memory[MESH] Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes. monarch-merged.owl corpora pedunculata|mushroom bodies MESH:D024521|MAT:0000336|MIAA:0000336|FBbt:00005801|Wikipedia:Mushroom_body|GAID:1231|BTO:0002675|EFO:0000925 uberon owl:Class Also in annelids. 'Comparison to the vertebrate pallium reveals that the annelid mushroom bodies develop from similar molecular coordinates within a conserved overall molecular brain topology and that their development involves conserved patterning mechanisms and produces conserved neuron types that existed already in the proto- stome-deuterostome ancestors. These data indicate deep homology of pallium and mushroom bodies and date back the origin of higher brain centers to prebilaterian times' UBERON:0001556 biolink:NamedThing lower urinary tract Subdivision of urinary system which consists of the urinary bladder and the urethra. monarch-merged.owl MA:0002636|FMA:45659|SCTID:181420004|galen:LowerUrinaryTract uberon owl:Class UBERON:0001913 biolink:NamedThing milk An emulsion of fat globules within a fluid that is secreted by the mammary gland during lactation. monarch-merged.owl mammal milk|mammary gland milk MESH:A13.622|GAID:1230|EMAPA:36540|ENVO:02000031|galen:Milk|Wikipedia:Breast_milk|MAT:0000056|NCIT:C13401|FMA:62100|EV:0100126|MA:0002552|BTO:0000868|UMLS:C1511310|VHOG:0001263|OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA|MIAA:0000056|CALOHA:TS-0636 to axiomatize the different forms of mammary gland secretion an ontology of the phases of pregnancy/lactation is required. Using the existing GO def of lactation is circular. uberon owl:Class The detailed similarities of mammary glands in living monotremes, marsupials, and eutherians argue for a monophyletic origin of these glands, perhaps by the combination of parts of preexisting sebaceous and sweat glands.[well established][VHOG] ncit:Milk refers specifically to cow milk UBERON:0002049 biolink:NamedThing vasculature An interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face. monarch-merged.owl vascular network BTO:0003718|TAO:0005249|ZFA:0005249|FMA:69050 http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg see also: vascular system. Consider merging? uberon owl:Class vascular UBERON:0002126 biolink:NamedThing solitary tract nuclear complex The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]. monarch-merged.owl solitary nuclei|nuclei of solitary tract|nucleus tractus solitarii Wikipedia:Nucleus_of_tractus_solitarius|FMA:72242|SCTID:369080003 uberon owl:Class UBERON:0002129 biolink:NamedThing cerebellar cortex The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer. monarch-merged.owl cortex cerebellaris|cortex of cerebellar hemisphere|cortex cerebelli SCTID:361593004|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=647|UMLS:C1284087|GAID:596|DMBA:16939|NCIT:C49216|Wikipedia:Cerebellar_cortex|VHOG:0001597|MBA:528|BIRNLEX:1566|MA:0000199|MESH:D002525|BM:CB-Cbx|BAMS:CbCx|BAMS:CB|BAMS:CBX|EMAPA:35211|FMA:72248|HBA:4697|DHBA:10657|EV:0100294|CALOHA:TS-2000|BTO:0000043|UMLS:C0007759 The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia) Cerebellum:NIH.png uberon owl:Class The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO][GO:0021695]. UBERON:0002303 biolink:NamedThing juxtaglomerular apparatus An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]. monarch-merged.owl juxtaglomerular complex|complexus juxtaglomerularis MA:0002546|Wikipedia:Juxtaglomerular_apparatus|BTO:0005157|EMAPA:30449|UMLS:C0022445|NCIT:C32891|MESH:D007606|SCTID:362219002|GAID:432|FMA:83599 uberon owl:Class UBERON:0003099 biolink:NamedThing cranial neural crest neural crest cells (NCCs) originating in the anterior part of the developing embryo and residing between the mid-diencephalon and the forming hindbrain; cranial NCCs migrate dorsolaterally to form the craniofacial mesenchyme that differentiates into various craniofacial cartilages and bones, cranial neurons, glia, and connective tissues of the face; these cells enter the pharyngeal pouches and arches where they give rise to thymic cells, bones of the middle ear and jaw (mandible), and the odontoblasts of the tooth primordia; like their counterparts in the trunk, cranial NCCs also contribute to the developing peripheral nervous system, along with the pigmented cell (i.e. melanocyte) lineage.|Neural crest cells (NCCs) originating in the anterior part of the developing embryo and residing between the mid-diencephalon and the forming hindbrain; cranial NCCs migrate dorsolaterally to form the craniofacial mesenchyme that differentiates into various craniofacial cartilages and bones, cranial neurons, glia, and connective tissues of the face; these cells enter the pharyngeal pouches and arches where they give rise to thymic cells, bones of the middle ear and jaw (mandible), and the odontoblasts of the tooth primordia; like their counterparts in the trunk, cranial NCCs also contribute to the developing peripheral nervous system, along with the pigmented cell (i.e. melanocyte) lineage. monarch-merged.owl cranial NCC population|head crest|CNC|cephalic neural crest|crista neuralis cranialis|head neural crest|head NCC population EHDAA2:0004420|EMAPA:16091|VHOG:0000063|ZFA:0001194|EFO:0003645|TAO:0001194|Wikipedia:Cranial_neural_crest|AAO:0010580|XAO:0001001 uberon owl:Class Neural crest that is part of the head.[TAO]|Anterior most portion of the neural crest. Migrates in three highly conserved streams: mandibular, hyoid and branchial.[AAO] We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] UBERON:0005162 biolink:NamedThing multi cell part structure A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part. monarch-merged.owl multi-cell-component structure|cell part cluster|multi-cell-part structure FBbt:00007060|CARO:0001000|FMA:83115|AAO:0011000 uberon owl:Class we go with the FMA classification rather than the CARO one. FMA def: 'Anatomical cluster which has as direct parts cell parts from two or more cells.' UBERON:0009142 biolink:NamedThing entire embryonic mesenchyme Sum total of mesenchyme in the embryo. monarch-merged.owl EMAPA:16097|EHDAA:177|EHDAA2:0001113 consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm) UBERON:0003313 uberon owl:Class UBERON:0011143 biolink:NamedThing upper urinary tract Subdivision of urinary system which consists of the kidney and the ureters. monarch-merged.owl galen:UpperUrinaryTract|NCIT:C61107|SCTID:181413006|FMA:45658 uberon owl:Class UBERON:2001248 biolink:NamedThing dorsal scute series monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001254 biolink:NamedThing abdominal scute series monarch-merged.owl abdominal scutes teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001709 biolink:NamedThing infraorbital series Anatomical cluster that is the series of dermal bones surrounding the orbit and associated with the infraorbital sensory canal. monarch-merged.owl circumorbital series ZFA:0001649 The infraorbital series may include the antorbital, a variable number of infraorbitals, and dermosphenotic (or posteriormost dorsal infraorbital). The infraorbital series may be formed by seven (primitively) or less bones in teleosts. Consequently, the so called dermosphenotic may correspond to the seventh, sixth or fifth bone, etc., depending on the taxon. teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001994 biolink:NamedThing gill raker row Anatomical cluster that consists of adjacent gill rakers constituting a row and is part of a ceratobranchial or epibranchial element of the branchial arches. Gill raker row is paired. monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002063 biolink:NamedThing nuchal plate series Anatomical cluster that consists of more than one type of nuchal plate in an individual. monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002098 biolink:NamedThing hemal spine series monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002099 biolink:NamedThing lateral line scale series Anatomical cluster that consists of more than one lateral line scale. monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002101 biolink:NamedThing branchiostegal ray series Anatomical cluster that consists of the branchiostegal rays within an individual. monarch-merged.owl branchiostegals teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002102 biolink:NamedThing epibranchial series Anatomical cluster that consists of the epibranchial elements within an individual. monarch-merged.owl epibranchials teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002103 biolink:NamedThing ceratobranchial series Anatomical cluster that consists of the ceratobranchial elements within an individual. monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002164 biolink:NamedThing caudal principal ray set Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones. monarch-merged.owl branched caudal rays|caudal principal lepidotrichia In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). The presence of marginal principal caudal rays as long or longer than the branched-and-segmented principal rays is a synapomorphy of teleosts (Arratia, 2008, 2009). teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:4300008 biolink:NamedThing epipleural series Anatomical cluster that consists of the epipleurals. monarch-merged.owl WD uberon owl:Class UBERON:4300208 biolink:NamedThing submandibular series A series of plate like bones found ventrally to the jaw. monarch-merged.owl WD uberon owl:Class UBERON:4300234 biolink:NamedThing scale sheath Series of scales in which each scale envelopes or overlaps an adjacent scale. monarch-merged.owl WD uberon owl:Class UBERON:4500012 biolink:NamedThing hypobranchial series Anatomical cluster that consists of the hypobranchial elements within an individual. monarch-merged.owl LMJ uberon owl:Class UBERON:4500013 biolink:NamedThing pharyngobranchial series Anatomical cluster that consists of the pharyngobranchial elements within an individual. monarch-merged.owl LMJ uberon owl:Class UBERON:4500014 biolink:NamedThing basibranchial series Anatomical cluster that consists of the basibranchial elements within an individual. monarch-merged.owl LMJ uberon owl:Class UBERON:6001722 biolink:NamedThing insect ring gland A closely associated cluster of three neuroendocrine glands located anterior to the aorta and dorsal to the esophagus. At embryonic stage 17 and in larva it is found anterior to the brain and is formed by the corpus cardiacum ventrally, the prothoracic gland laterally and the corpus allatum dorsally. The adult ring gland is located anterior to the proventriculus and is formed by the corpus cardiacum ventrally, the corpus allatum dorsally and the hypocerebral ganglion posterior to the corpus cardiacum. It is innervated by neurons of the nervus corporis cardiaci (NccI-III). monarch-merged.owl FBbt:00001722 uberon owl:Class prov:Person biolink:NamedThing Person Person agents are people. monarch-merged.owl Consider: http://xmlns.com/foaf/0.1/Person owl:Class foaf:Group biolink:NamedThing Group monarch-merged.owl stable A class of Agents.|The Group class represents a collection of individual agents (and may itself play the role of a Agent, ie. something that can perform actions). This concept is intentionally quite broad, covering informal and ad-hoc groups, long-lived communities, organizational groups within a workplace, etc. Some such groups may have associated characteristics which could be captured in RDF (perhaps a homepage, name, mailing list etc.). owl:Class BFO:0000034 biolink:NamedThing function monarch-merged.owl Function function BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc. A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001]) the function of amylase in saliva to break down starch into sugar|the function of a hammer to drive in nails|the function of a heart pacemaker to regulate the beating of a heart through electricity (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] owl:Class ENVO:01000452 biolink:NamedThing environmental disposition A disposition which is realised by an environmental system or system parts thereof. monarch-merged.owl owl:Class GENO:0000138 biolink:NamedThing heritabililty The disposition of an entity to be transmitted to subsequent generations following a genetic replication or organismal reproduction event. monarch-merged.owl We can use these terms to describe the heritability of genetic matieral or sequence features - e.g. chromosomal DNA or genes are heritable in that they are passed on to child cells/organisms). Such genetic material has a heritable disposition in a cell or virion, in virtue of its being replicated in its cellular host and inherited by progeny cells (such that the sequence content it encodes is stably propagated in the genetic material of subsequence generations of cells). We can also use these terms to describe the heritability of phenotypes/conditions - e.g. the passage of a particular trait or disease across generations of reproducing cells/organisms. owl:Class GENO:0000141 biolink:NamedThing inheritance pattern The pattern in which a genetic trait or condition is passed from one generation to the next, as determined by genetic interactions between alleles of the causal gene, and interactions between these alleles and the environment. monarch-merged.owl phenotypic inheritance pattern|mode of inheritance http://purl.obolibrary.org/obo/HP_0000005|http://purl.obolibrary.org/obo/NCIT_C45827 An inheritance pattern results from the disposition of a genetic variant to cause a particular trait or phenotype when it is present in a particular genetic and environmental context. Here, "genetic context" refers to the allelic state of the variant, which depends on what other alleles exist at the same location/locus in the genome. Zygosities such as heterozygous and homozygous are simple, common examples of 'states' of an allele. These genetic and environmental "interactions" of alleles play out at the level of the gene products produced by the causal alleles, and are observable in the pattern with which the trait caused by an allele is inherited across generations of individuals. Thus, an inheritance pattern such as dominance is not inherent to a single allele or its phenotype, but rather a result of the relationship between two alleles of a gene and the phenotype that results in a given environment. This also means that the 'dominance' of an allele is context dependent - Allele 1 can be dominant over Allele 2 in the context of Phenotype X, but recessive to Allele 3 in the context of Phenotype Y. The subtypes of inheritance pattern in this hierarchy are largely distinguished based on the underlying genetic mechanism, which will manifest in a characteristic pattern of traits in affected and unaffected family members. For example, 'autosomal dominant inheritance' defines an inheritance pattern that is caused by the interaction of alleles on non-sex chromosomes wherein the trait manifests even in heterozygotes - resulting in a characteristic pattern of 'dominant' inheritance across generations of individuals in a family. owl:Class OBO:MF_0000032 biolink:NamedThing bodily disposition A bodily disposition is a disposition that inheres in some extended organism. Examples are: my disposition to catch a cold when exposed to a virus, my ability to speak the English language. monarch-merged.owl owl:Class MONDO:0000001 biolink:NamedThing disease or disorder A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism. monarch-merged.owl diseases and disorders|disease or disorder|condition|medical condition|disease or disorder, non-neoplastic|diseases|disease|disorders|disorder|other disease EFO:0000408|SCTID:64572001|ICD9:799.9|Orphanet:377788|UMLS:C0012634|DOID:4|NCIT:C2991|OGMS:0000031|MESH:D004194 owl:Class MONDO:0042489 biolink:NamedThing disease susceptibility A constitution or condition of the body which makes the tissues react in special ways to certain extrinsic stimuli and thus tends to make the individual more than usually susceptible to certain diseases. monarch-merged.owl susceptibilities, disease|disease susceptibilities|diathesis|susceptibility, disease|diatheses MESH:D004198 owl:Class OBI:1110045 biolink:NamedThing disposition to be bound by an adaptive immune receptor Is the disposition borne by a material entity that is realized in a process of being bound by a adaptive immune receptor. monarch-merged.owl owl:Class OBI:1110093 biolink:NamedThing disposition to infect an organism Is a role borne by an agent, and realized when in contact with or inside another organism in which it is capable of replicating and causing disease monarch-merged.owl owl:Class OGMS:0000031 biolink:NamedThing disease A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. monarch-merged.owl owl:Class BFO:0000038 biolink:NamedThing one-dimensional temporal region monarch-merged.owl OneDimensionalTemporalRegion 1d-t-region BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks). A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001]) the temporal region during which a process occurs. (forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] owl:Class BFO:0000148 biolink:NamedThing zero-dimensional temporal region monarch-merged.owl ZeroDimensionalTemporalRegion 0d-t-region temporal instant. A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001]) a temporal region that is occupied by a process boundary|the moment of death.|right now|the moment at which a child is born|the moment at which a finger is detached in an industrial accident (forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] owl:Class OBO:CARO_0030000 biolink:NamedThing biological entity Entity that is, is part of, or derived from an organism, virus, or viroid or a collection of them. monarch-merged.owl Important for alignment with Darwin Core class "Organism". owl:Class CHEBI:25805 biolink:NamedThing oxygen atom monarch-merged.owl O|oxygen|oxigeno|8O|oxygene|Sauerstoff 0 O InChI=1S/O QVGXLLKOCUKJST-UHFFFAOYSA-N 15.99940 15.99491 [O] KEGG:C00007|WebElements:O chebi_ontology owl:Class PO:0000071 biolink:NamedThing companion cell A parenchyma cell (PO:0000074) that is adjacent to a sieve tube element (PO:0000289) and arises from the same phloem mother cell (PO:0000400) as the sieve tube element. monarch-merged.owl 伴細胞 (Japanese, exact)|célula acompañiante (Spanish, exact)|minor vein companion cell (exact) owl:Class PO:0000084 biolink:NamedThing plant sperm cell A gamete (PO:0025006) produced by an antheridium (PO:0025125) or a microgametophyte (PO:0025280). monarch-merged.owl sperm nucleus (related)|sperm cell (broad)|植物精子細胞 (Japanese, exact)|célula espermática o esperma (Spanish, exact)|male gamete (exact)|microgamete (exact) owl:Class PO:0000115 biolink:NamedThing socket cell A shoot epidermal cell (PO:0025165) that surrounds a trichome (PO:0000282) and provides its support. monarch-merged.owl ソケット細胞 (Japanese, exact)|cell located at the base of the trichome (related)|trichome support cell (related)|célula de encaje (Spanish, exact) owl:Class PO:0000256 biolink:NamedThing root hair cell A root epidermal cell (PO:0025164) that develops from a trichoblast (PO:0000262) and has as part a root hair (GO:0035618). monarch-merged.owl 根毛細胞 (Japanese, exact)|célula del pelo de la raíz (Spanish, exact) owl:Class PO:0000262 biolink:NamedThing trichoblast A root epidermal cell that is the smaller cell produced by the asymmetric division of an epidermal intial and gives rise to a root hair. monarch-merged.owl tricoblasto (Spanish, exact)|根毛形成細胞、トリコブラスト (Japanese, exact)|hair cell (related) owl:Class PO:0000263 biolink:NamedThing non-hair root epidermal cell A root epidermal cell (PO:0025164) that develops from an epidermal initial (PO:0000349) and does not have as part a root hair (GO:0035618). monarch-merged.owl atrichoblast (exact)|non-hair cell (broad)|非毛根形成細胞、アトリコブラスト (Japanese, exact)|atricoblasto (Spanish, exact) owl:Class PO:0000282 biolink:NamedThing trichome A unicellular or multicellular plant structure (PO:0009011) that forms a non-sclerified outgrowth from the epidermis (PO:0005679). monarch-merged.owl non-secretory trichome (narrow)|cilium (narrow)|glochidium (narrow)|seta (related)|capillus (narrow)|glochid (narrow)|tricoma (Spanish, exact)|squamae (narrow)|squamellae (narrow)|squamule (narrow)|scale (narrow)|capilli (narrow)|cilia (narrow)|barb trichome (broad)|glochidia (narrow)|squamella (narrow)|bristle (broad)|lepides (narrow)|hair (narrow)|lepis (narrow)|squama (narrow)|setae (related)|毛茸、糸状体、毛 (Japanese, exact) owl:Class PO:0000293 biolink:NamedThing guard cell One of a pair of cells flanking the stomatal pore. monarch-merged.owl occlusive cell (exact)|célula guardiana (Spanish, exact)|孔辺細胞 (Japanese, exact) owl:Class PO:0000332 biolink:NamedThing epidermal pavement cell A shoot epidermal cell that is relatively unspecialized at maturity. monarch-merged.owl célula del pavimento epidermal (Spanish, exact)|表皮被蓋細胞 (Japanese, exact) owl:Class PO:0000351 biolink:NamedThing guard mother cell A shoot epidermal cell that divides to produce the guard cells. monarch-merged.owl 孔辺母細胞 (Japanese, exact)|célula madre de la célula guardiana (Spanish, exact) owl:Class PO:0002002 biolink:NamedThing embryo basal cell A native plant cell (PO:0025606) that is the lower-most cell formed after the first division of the plant zygote (PO:0000423) and is part of a plant embryo (PO:0009009). monarch-merged.owl embryonic basal cell (exact)|胚基底細胞 (Japanese, exact)|célula basal (Spanish, exact) owl:Class PO:0004535 biolink:NamedThing fruit placenta A portion of placenta tissue (PO:0025078) that is part of a fruit (PO:0009001) and to which seeds (PO:0009010) are attached. monarch-merged.owl 果実の胎座 (Japanese, exact)|placenta del fruto (Spanish, exact) owl:Class PO:0005029 biolink:NamedThing root primordium A primordium (PO:0025127) that develops from a root anlagen (PO:0025433) and is committed to the development of a root (PO:0009005). monarch-merged.owl root primordia (exact, plural)|根原基（可視的） (Japanese, exact)|portion of root primordium tissue (exact)|primordio de raíz (Spanish, exact) owl:Class PO:0005679 biolink:NamedThing epidermis A portion of plant tissue (PO:0009007) composed of epidermal cells (PO:0004013) that develops from the protoderm (PO:0006210) and covers the surface of a plant structure (PO:0009011). monarch-merged.owl 表皮 (Japanese, exact)|multiseriate epidermis (related)|portion of epidermal tissue (exact)|epidermis (Spanish, exact)|epidermides (exact, plural)|epidermal layer (exact)|epidermises (exact, plural)|dermal tissue (exact) owl:Class PO:0005849 biolink:NamedThing primary xylem A portion of xylem (PO:0005352) tissue that develops from the procambium (PO:0025275). monarch-merged.owl 一次木部 (Japanese, exact)|portion of primary xylem tissue (exact)|xilema primario (Spanish, exact) owl:Class PO:0006001 biolink:NamedThing phyllome A lateral plant organ (PO:0009008) produced by a shoot apical meristem (PO:0020148). monarch-merged.owl フィロム、葉(的）器官 (Japanese, exact)|filoma (Spanish, exact) owl:Class PO:0006088 biolink:NamedThing primary sporogenous cell A native plant cell (PO:0025606) is formed by the division of the male archesporial initial. After several mitotic divisions these cells differentiate into pollen mother cells. monarch-merged.owl 一次胞子形成細胞 (Japanese, exact)|célula esporógena primaria (Spanish, exact) owl:Class PO:0006204 biolink:NamedThing sporocyte A native plant cell (PO:0025606) which is diploid (2n), and undergoes meiosis (GO:0007126) to produce four haploid (1n) plant spores (PO:0025017). monarch-merged.owl 胞子母細胞 (Japanese, exact)|meiocyte (exact)|spore mother cell (exact)|esporocito (Spanish, exact) owl:Class PO:0006343 biolink:NamedThing axillary shoot system A shoot-borne shoot system (PO:0004545) that develops from an axillary bud (PO:0004709). monarch-merged.owl 腋苗条系 (Japanese, exact)|sistema axilar del epiblasto (epiblastema) (Spanish, exact)|axillary branch (related)|Musa sucker (narrow) owl:Class PO:0008030 biolink:NamedThing trichome cell A plant cell (PO:0009002) that is part of a multicellular trichome (PO:0000282). monarch-merged.owl 毛（毛茸、糸状体）細胞 (Japanese, exact)|célula del tricoma (Spanish, exact) owl:Class PO:0009001 biolink:NamedThing fruit A multi-tissue plant structure (PO:0025496) that develops from a gynoecium (PO:0009062), or a single carpel (PO:0009030), and at maturity may have as parts one or more seeds (PO:0009010). monarch-merged.owl 果実 (exact, Japanese)|coenocarp (narrow)|compound fruit (broad)|indehiscent fruit (broad)|dehiscent fruit (broad)|frucht (exact, German)|multiple fruit (broad)|fruto (exact, Spanish)|diaspore (broad)|propagule (broad)|aggregate fruit (broad)|syncarp (narrow) PO_GIT:76 A fruit (PO:0009001) may contain additional plant structures (PO:0009011) that were part of a flower (PO:0009046) and mature along with the gynoecium, such as a receptacle (PO:0009064). A fruit may develop without fertilization in cases of parthenocarpy, apomixis, or other hormone-induced conditions and may not always contain seeds (PO:0009010). When annotating to fruit (PO:0009001) that are referred to as ‘aggregate’, ‘multiple’, or ‘compound’, please annotate directly to the appropriate plant structure, such as receptacle, hypanthium (PO:0009065) or infructescence (PO:0006342). Fruits only occur in angiosperms. PO:0020071|PO:0020082|PO:0020070|PO:0020080|PO:0020076|PO:0020107|PO:0020069|PO:0020078|PO:0020079|PO:0020072|PO:0020077|PO:0020068|PO:0020073|PO:0020083|PO:0020087|PO:0020067|PO:0020074 plant_anatomy owl:Class PO:0009005 biolink:NamedThing root A plant axis (PO:0025004) that lacks shoot axis nodes (PO:0005004) and usually grows indeterminately. monarch-merged.owl 根 (Japanese, exact)|aerial root (narrow)|raíz (Spanish, exact)|radix (exact)|radices (exact, plural)|climbing root (narrow) owl:Class PO:0009010 biolink:NamedThing seed A multi-tissue plant structure (PO:0025496) that develops from a plant ovule (PO:0020003) and has as parts a plant embryo (PO:0009009) enclosed in a seed coat (PO:0009088). monarch-merged.owl semilla (Spanish, exact)|pyrene (narrow)|diaspore (broad)|種子 (Japanese, exact) PO_GIT:405 A seed generally develops from an ovule (PO:0020003) after fertilization, but may develop without fertilization in the case of apogamy (e.g., adventitious embryos or somatic embryos). A seed is a reproductive unit of seed plants (gymnosperms, angiosperms, and fossil pteridosperms). plant_anatomy owl:Class PO:0009046 biolink:NamedThing flower A determinate reproductive shoot system (PO:0025082) that has as part at least one carpel (PO:0009030) or at least one stamen (PO:0009029) and does not contain any other determinate shoot system (PO:0009006) as a part. monarch-merged.owl monoclinous flower (narrow)|basal flower (narrow)|Asteraceae floret (narrow)|floret (related)|perfect flower (narrow)|hermaphrodite flower (narrow)|flor (Spanish, exact)|花 (Japanese, exact)|double flower (narrow) PO_GIT:160|PO_GIT:259 The characteristic reproductive structure of angiosperms. May have as part one or more petals, sepals or tepals. May contain one or more pistillode (PO:0009078), staminode (PO:0009077) or other aborted organs that don't show up in mature form. PO:0004541 plant_anatomy owl:Class PO:0009061 biolink:NamedThing androecium A collective phyllome structure (PO:0025023) composed all of the stamens (PO:0009029) in a flower (PO:0009046). monarch-merged.owl androecium of upper floret of pedicellate spikelet of ear (narrow)|androecium of ear floret (narrow)|androecium of tassel floret (exact)|雄蕊群 (Japanese, exact)|androecium of lower floret of sessile spikelet of ear (narrow)|Zea androecium (narrow)|androecium of upper floret of pedicellate spikelet of tassel (exact)|androecium of upper floret of sessile spikelet of ear (narrow)|androecia (exact, plural)|androecium of lower floret of pedicellate spikelet of ear (narrow)|Poaceae androecium (narrow)|androecium of lower floret of sessile spikelet of tassel (narrow)|androecium of upper floret of sessile spikelet of tassel (narrow)|androecium column (narrow)|androecio (Spanish, exact) owl:Class PO:0009062 biolink:NamedThing gynoecium A collective phyllome structure (PO:0025023) composed all of the carpels (PO:0009030) in a flower (PO:0009046). monarch-merged.owl gynoecium of lower floret of sessile spikelet of ear (narrow)|gynaecium (exact)|gynoecium of upper floret of sessile spikelet of ear (narrow)|gynoecium of upper floret of sessile spikelet of tassel (narrow)|gynoecium of upper floret of pedicellate spikelet of ear (narrow)|apocarpous gynoecium (narrow)|gynoecium of lower floret of pedicellate spikelet of ear (narrow)|Poaceae gynoecium (narrow)|syncarpous gynoecium (narrow)|gynoecium of ear floret (narrow)|雌蕊群 (Japanese, exact)|ginoecio (Spanish, exact)|gynoecium of upper floret of pedicellate spikelet of tassel (narrow)|gynoecia (exact, plural)|gynoecium of tassel floret (narrow)|gynoecium of lower floret of sessile spikelet of tassel (narrow)|gynoecium of lower floret of pedicellate spikelet of tassel (narrow)|pistil (broad)|Zea gynoecium (narrow) PO_GIT:71|PO_GIT:98|PO_GIT:470 If annotating gene expression to a gynoecium with a single carpel (PO:0009030), the annotation should go on carpel. A gynoecium with two or more carpels may be either syncarpous (carpels fused) or apopcarpous (carpels free) or the carpels may be partially fused. The word pistil is used synonymously with gynoecium for a synocarpous gynoecium, and synonymously with carpel for an apocarpous gynoecium, whether it has one or more carpels. In Zea mays, gynoecia of tassel florets and of the lower florets of ear spikelets usually do not develop fully, and they are present in a rudimentary state. If you are annotating to this structure for Zea mays or other grasses, please also add an annotation to the corresponding floret type. Choose the most specific term possible from: spikelet floret (PO:0009082), ear floret (PO:0006354), lower floret of pedicellate spikelet of ear (PO:0006353), lower floret of sessile spikelet of ear (PO:0006351), upper floret of pedicellate spikelet of ear (PO:0006350), upper floret of sessile spikelet of ear (PO:0006352), tassel floret (PO:0006310), lower floret of pedicellate spikelet of tassel (PO:0006313), lower floret of sessile spikelet of tassel (PO:0006315), upper floret of pedicellate spikelet of tassel (PO:0006314), upper floret of sessile spikelet of tassel (PO:0006316). PO:0006424|PO:0006365|PO:0006384|PO:0006317|PO:0006423|PO:0006426|PO:0006357|PO:0006391|PO:0006425|PO:0006394|PO:0006404|PO:0006403|PO:0025089 plant_anatomy owl:Class PO:0009066 biolink:NamedThing anther A collective plant organ structure (PO:0025007) that is the pollen-bearing part of a stamen (PO:0009029). monarch-merged.owl Zea anther (narrow)|半葯,花粉のう (Japanese, exact)|antera (Spanish, exact)|Poaceae anther (narrow) owl:Class PO:0020003 biolink:NamedThing plant ovule A plant organ (PO:0009008) that has as parts a nucellus (PO:0020020) in which a female gametophyte (PO:0025279) is located, one or two integuments (PO:0020021), and a funicle (PO:0020006). monarch-merged.owl Zea ovule (narrow)|Poaceae ovule (narrow)|óvulo vegetal (Spanish, exact)|胚珠 (Japanese, exact) PO_GIT:70|PO_GIT:464 A seed (PO:0009010) develops from a plant ovule. In angiosperms, a plant ovule is part of a plant ovary (PO:0009072). In conifers, a plant ovule is part of an ovuliferous scale (add term). If you are annotating to this structure for Zea mays or other grasses, please also add an annotation to the corresponding floret type. Choose the most specific term possible from: spikelet floret (PO:0009082), ear floret (PO:0006354), upper floret of pedicellate spikelet of ear (PO:0006350), upper floret of sessile spikelet of ear (PO:0006352). PO:0006457|PO:0006491 plant_anatomy owl:Class PO:0020108 biolink:NamedThing suspensor An embryonic plant structure at the base of a plant embryo that develops from an embryonic basal cell and connects an embryo proper to the wall of a megagametophyte. monarch-merged.owl suspensor (Spanish, exact)|胚柄 (Japanese, exact) owl:Class PO:0025059 biolink:NamedThing portion of ground tissue Any portion of plant tissue (PO:0009007) other than epidermis (PO:0005679) or vascular tissue (PO:0009015). monarch-merged.owl fundamental tissue (exact)|porción del tejido fundamental (Spanish, exact)|基本組織の一部 (Japanese, exact) owl:Class PO:0025128 biolink:NamedThing phyllome primordium A primordium (PO:0025127) that develops from a phyllome anlagen (PO:0025430) and is part of a shoot apex (PO:0000037) and is committed to the development of a phyllome (PO:0006001). monarch-merged.owl portion of phyllome primordium tissue (exact)|primordio del filoma (Spanish, exact)|phyllome primordia (exact, plural)|フィロム原基（可視的） (Japanese, exact) owl:Class PO:0025195 biolink:NamedThing pollen tube cell A native plant cell (PO:0025606) that develops from a microgametophyte vegetative cell (PO:0020099) and forms a tubular extension of the pollen (PO:0025281). monarch-merged.owl célula del tubo polínico (Spanish, exact)|花粉管細胞 (Japanese, exact) owl:Class PO:0025262 biolink:NamedThing plant ovary septum A septum (PO:0000030) that divides a multilocular plant ovary (PO:0009072). monarch-merged.owl septo del ovario (Spanish, exact)|ovary dissepiment (broad)|子房隔壁 (Japanese, exact)|ovary septa (exact, plural)|carpel synonym (related) owl:Class PO:0025268 biolink:NamedThing fruit septum A septum that divides a cavity or mass of tissue in a fruit and develops from an ovary septum. monarch-merged.owl fruit dissepiment (broad)|果実隔壁 (Japanese, exact)|septo del fruto (Spanish, exact) owl:Class UBERON:0001062 biolink:NamedThing anatomical entity Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. monarch-merged.owl EHDAA2:0002229|FMA:62955|NCIT:C12219|AEO:0000000|CARO:0000000|XAO:0000000|http://purl.obolibrary.org/obo/CARO_0000000|MA:0000001|TGMA:0001822|UMLS:C1515976|WBbt:0000100|TAO:0100000|AAO:0010841|BILA:0000000|ZFA:0100000|BIRNLEX:6|FBbt_root:00000000|FBbt:10000000|HAO:0000000 Stub class to serve as root of hierarchy for imports of anatomical entities from UBERON, CARO, or taxon-specific anatomy ontologies. uberon owl:Class UBERON:0001776 biolink:NamedThing optic choroid Vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP].|vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]. monarch-merged.owl posterior uvea|choroid coat|chorioid|choroidea|optic choroid|eye choroid|choroid ZFA:0005229|MA:0000263|BTO:0001829|UMLS:C0008520|FMA:58298|TAO:0005229|VHOG:0001568|CALOHA:TS-2054|Wikipedia:Choroid|EV:0100347|MESH:D002829|NCIT:C12344|SCTID:181172003|GAID:913|EMAPA:19077 http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg check choroid vs choroid layer; check ZFA/TAO placement - no homology assertion in VHOG. Note this is entirely in the posterior region of eyeball in ZFA uberon owl:Class choroidal MP treats posterior uvea and optic choroid as distinct UBERON:0001944 biolink:NamedThing pretectal region Nuclear complex between dorsal thalamus and optic tectum whose nuclei receive afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input. monarch-merged.owl regio pretectalis|pretectum|praetectum|nucleus praetectalis|pretectal nuclei|area praetectalis|nuclei pretectales|pretectal area|area pretectalis MA:0001062|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=467|DMBA:16510|BAMS:PRT|ZFA:0000418|SCTID:416333003|UMLS:C0175354|EMAPA:32778|DHBA:12181|BAMS:PTc|Wikipedia:Pretectum|BIRNLEX:703|Wikipedia:Pretectal_area|FMA:62402|TAO:0000418|BAMS:PTec|XAO:0004303|MBA:1100|HBA:9079|NLX:59721|BM:MB-Tec-PT uberon owl:Class A narrow, transversely oriented rostral zone of the mesencephalic tectum, bounded caudally by the superior colliculus, rostrally by the habenular trigone, and laterally by the pulvinar thalami; the pretectal area contains several nuclei that receive fibers from the optic tract; it has bilateral efferent connections with the Edinger-Westphal nucleus of the oculomotor nuclear complex by way of which it mediates the pupillary light refle[MP:0009637]x|Region of brain lying between the midbrain tectum and the thalamus (Sefton and Dreher, in Paxinos, G The rat central nervous system, 1995, pg 859), Situated at the level of poterior commissure and just rostral to the superior colliculus (Brodal, Neurological Anatomy, 3rd ed, 1981, pg 542) in monotremes, undifferentiated and possesses only a single nucleus[ISBN:0471888893]|teleost fishes exhibit hypertrophy of the pretectum[ISBN:0471888893]|within the amniotes, this region is smaller in mammals[ISBN:0471888893] It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex part of diencephalon in ZFA - modify to adjacent here, supported by pub. Note there is some inconsistency in resources between the region vs nuclei - sometimes they are treated equivalent, sometimes separate (e.g. MP) UBERON:0002810 biolink:NamedThing right frontal lobe A frontal cortex that is part of a right cerebral hemisphere. monarch-merged.owl BIRNLEX:1786|UMLS:C1281954|SCTID:314141005|FMA:72969 uberon owl:Class UBERON:0002811 biolink:NamedThing left frontal lobe A frontal cortex that is part of a left cerebral hemisphere. monarch-merged.owl SCTID:314142003|BIRNLEX:1787|UMLS:C1281955|FMA:72970 uberon owl:Class UBERON:0004292 biolink:NamedThing cardiac skeleton Dense connective tissue that separates the atria from the ventricles and provides physical support for the heart. monarch-merged.owl trigona fibrosa|skeleton of heart|trigonum fibrosum dextrum cordis|anulus fibrosus dexter cordis|heart fibrous skeleton|anulus fibrosus sinister cordis|cardiac fibrous skeleton|fibrous skeleton of heart|trigonum fibrosum sinistrum cordis Wikipedia:Cardiac_skeleton|FMA:9496|EMAPA:36645 http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png uberon owl:Class It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support[WP] BFO:0000142 biolink:NamedThing one-dimensional continuant fiat boundary monarch-merged.owl OneDimensionalContinuantFiatBoundary 1d-cf-boundary a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001]) the median sulcus of your tongue|the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.|all lines of latitude and longitude|all geopolitical boundaries|The Equator (iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] owl:Class BFO:0000146 biolink:NamedThing two-dimensional continuant fiat boundary monarch-merged.owl TwoDimensionalContinuantFiatBoundary 2d-cf-boundary a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001]) (iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] owl:Class BFO:0000147 biolink:NamedThing zero-dimensional continuant fiat boundary monarch-merged.owl ZeroDimensionalContinuantFiatBoundary 0d-cf-boundary zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona. a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001]) the geographic North Pole|the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet|the point of origin of some spatial coordinate system. (iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] owl:Class BFO:0000144 biolink:NamedThing process profile b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]) monarch-merged.owl ProcessProfile process-profile b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005]) The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.|On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels|One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance. (forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] |(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] owl:Class BFO:0000182 biolink:NamedThing history monarch-merged.owl History history A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001]) A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001]) owl:Class ENVO:02500000 biolink:NamedThing environmental system process A process in which includes the components of an environmental system as participants. monarch-merged.owl owl:Class FOODON:00002451 biolink:NamedThing food transformation process A process involving the physical transformation of a food source or food product into some derived organic material or food product monarch-merged.owl requires discussion Damion Dooley owl:Class GENO:0000351 biolink:NamedThing biological process monarch-merged.owl Stub class to serve as root of hierarchy for imports of biological processes from GO-BP. owl:Class GO:0003674 biolink:NamedThing molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. monarch-merged.owl molecular function molecular process Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. GO:0005554 molecular_function owl:Class GO:0008150 biolink:NamedThing biological_process A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. monarch-merged.owl biological process|single organism process|single-organism process|physiological process physiological process|biological process Wikipedia:Biological_process Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.|Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. jl 2012-09-19T15:05:24Z GO:0007582|GO:0044699|GO:0000004 biological_process owl:Class OGMS:0000060 biolink:NamedThing bodily process A process in which at least one bodily component of an organsim participates. monarch-merged.owl From OGMS: http://purl.obolibrary.org/obo/OGMS_0000060 http://www.jbiomedsem.com/content/1/1/10 owl:Class PCO:0000005 biolink:NamedThing population process A process that has as primary participant a population. Includes processes such as population growth, extinction, evolution, selection, and adaptation. Population processes may depend on the processes of individual organisms {e.g., population growth reflects the cumulative multicellular organism reproduction (GO:0032504) and death (GO:0016265) of all individuals in a population}, but cannot be described for an individual organism. Some of these processes (e.g., evolution, extinction) can also occur at the species level, so PCO distinguishes between, for example, population extinction and species extinction. monarch-merged.owl The GO has the terms 'multi-organism process' (GO:0051704) and 'intraspecies interactions between organisms' (GO:0051703), but these categories are only defined for interactions between two individuals. It is unclear at this point if 'biological process' (GO:0008150) encompasses population processes. owl:Class PCO:0000022 biolink:NamedThing species extinction A process that ultimately leads to the death of all individuals in a population. monarch-merged.owl owl:Class RO:0002310 biolink:NamedThing exposure event or process A process occurring within or in the vicinity of an organism that exerts some causal influence on the organism via the interaction between an exposure stimulus and an exposure receptor. The exposure stimulus may be a process, material entity or condition (for example, lack of nutrients). The exposure receptor can be an organism, organism population or a part of an organism. monarch-merged.owl Chris Mungall cjm 2017-06-05 17:55:39+00:00 This class is intended as a grouping for various domain and species-specific exposure classes. The ExO class http://purl.obolibrary.org/obo/ExO_0000002 'exposure event' assumes that all exposures involve stressors, which limits the applicability of this class to 'positive' exposures, e.g. exposing a plant to beneficial growing conditions. An exposure event in which a plant is provided with fertilizer. The exposure receptor is the root system of the plant, the stimulus is the fertilizing chemical, the route is via the soil, possibly mediated by symbotic microbes.|An exposure event in which a human is exposed to particulate matter in the air. Here the exposure stimulus/stress is the particulate matter, the receptor is the airways and lungs of the human, https://github.com/oborel/obo-relations/pull/173 owl:Class prov:Activity biolink:NamedThing Activity An activity is something that occurs over a period of time and acts upon or with entities; it may include consuming, processing, transforming, modifying, relocating, using, or generating entities. monarch-merged.owl owl:Class BFO:0000145 biolink:NamedThing relational quality b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001]) monarch-merged.owl RelationalQuality r-quality John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.|a marriage bond, an instance of requited love, an obligation between one person and another. (iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] owl:Class IAO:0000015 biolink:NamedThing information carrier A quality of an information bearer that imparts the information content monarch-merged.owl Smith, Ceusters, Ruttenberg, 2000 years of philosophy 12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'.|2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it. information carrier In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case. PERSON: Alan Ruttenberg owl:Class OBO:MF_0000074 biolink:NamedThing bodily quality A bodily quality is a quality that inheres in some extended organism. monarch-merged.owl owl:Class OBI:0000654 biolink:NamedThing device setting a quality inheres_in some device and is concretization of some (device_setting_specification and is_about a quality of the device monarch-merged.owl owl:Class PATO:0000051 biolink:NamedThing morphology A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. monarch-merged.owl morphology quality owl:Class PATO:0000125 biolink:NamedThing mass A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. monarch-merged.owl For any biological use of PATO, the concept that should be used is 'mass' and not 'weight'. For example, increased weight of an organism. mass quality owl:Class PATO:0001241 biolink:NamedThing physical object quality A quality which inheres in a continuant. monarch-merged.owl quality of continuant|quality of an object|monadic quality of a continuant|quality of a continuant|multiply inhering quality of a physical entity|multiply inhering quality of a physical entity |monadic quality of continuant|monadic quality of an object|quality of a single physical entity snap:Quality Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. physical object quality PATO:0001238|PATO:0001237 quality owl:Class PATO:0001894 biolink:NamedThing phenotypic sex An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics. monarch-merged.owl quality owl:Class SO:0000010 biolink:NamedThing protein_coding A gene which, when transcribed, can be translated into a protein. monarch-merged.owl protein-coding Category=external. sequence owl:Class BSPO:0000000 biolink:NamedThing left side The side of an organism that is left of the sagittal plane. monarch-merged.owl left spatial owl:Class BSPO:0000054 biolink:NamedThing anatomical side An anatomical region bounded by a plane perpendicular to an axis through the middle. monarch-merged.owl FBql:00005841 spatial owl:Class BSPO:0000001 biolink:NamedThing upper side monarch-merged.owl upper Consider merging with superior side. spatial owl:Class BSPO:0000004 biolink:NamedThing superficial side monarch-merged.owl superficial spatial owl:Class BSPO:0000007 biolink:NamedThing right side The side of an organism that is right of the sagittal plane. monarch-merged.owl right spatial owl:Class BSPO:0000055 biolink:NamedThing anterior side An anatomical region that is the entire part of an anatomical structure anterior to a transverse plane and bounded on one side by the same transverse plane. monarch-merged.owl rostral|anterior FBql:00005848|FBcv:0000053 spatial owl:Class BSPO:0000056 biolink:NamedThing posterior side An anatomical region that is the entire part of an anatomical structure posterior to a transverse plane and bounded on one side by the same transverse plane. monarch-merged.owl posterior|caudal FBql:00005849|FBcv:0000065 spatial owl:Class BSPO:0000057 biolink:NamedThing apical side Anatomical side that is located on the apical end of an organism or structure. monarch-merged.owl apical FBql:00005854|FBcv:0000054 spatial owl:Class BSPO:0000058 biolink:NamedThing basal side Anatomical side that is located on the basal end of an organism or structure. monarch-merged.owl basal FBcv:0000055|FBql:00005855 The part of the organism attached to a substrate. Axis of symmetry. spatial owl:Class BSPO:0000059 biolink:NamedThing central side Anatomical side that is centrally located on an organism or structure. monarch-merged.owl central FBcv:0000056|FBql:00015851 central is not an axis direction spatial owl:Class BSPO:0000060 biolink:NamedThing contralateral side On the opposite side. monarch-merged.owl contralateral FBql:00005851|FBcv:0000057 inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. spatial owl:Class BSPO:0000061 biolink:NamedThing proximal side monarch-merged.owl proximal FBql:00005852|FBcv:0000066 spatial owl:Class BSPO:0000062 biolink:NamedThing distal side Anatomical side that is distally located on an organism or structure. monarch-merged.owl distal FBcv:0000058|FBql:00005853 spatial owl:Class BSPO:0000063 biolink:NamedThing dorsal side An anatomical region that is the entire part of an anatomical structure dorsal to a horizontal plane and bounded on one side by the same transverse plane. monarch-merged.owl dorsal FBcv:0000059|FBql:00005842 spatial owl:Class BSPO:0000065 biolink:NamedThing ipsilateral side On the same side monarch-merged.owl ipsilateral FBql:00005850|FBcv:0000062 inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. spatial owl:Class BSPO:0000066 biolink:NamedThing lateral side monarch-merged.owl lateral FBql:00005844|FBcv:0000063 spatial owl:Class BSPO:0000067 biolink:NamedThing medial side monarch-merged.owl medial FBcv:0000064|FBql:00005847 a point in the centre of the organism (where the left-right axis intersects the midsagittal plane) spatial owl:Class BSPO:0000068 biolink:NamedThing ventral side An anatomical region that is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane. monarch-merged.owl ventral FBcv:0000070|FBql:00005843 spatial owl:Class BSPO:0000129 biolink:NamedThing peripheral side monarch-merged.owl spatial owl:Class BSPO:0000130 biolink:NamedThing axial side monarch-merged.owl spatial owl:Class BSPO:0000005 biolink:NamedThing anatomical surface A 2D surface of an anatomical continuant. monarch-merged.owl surface FMA:24137 to be merged into CARO spatial owl:Class OBO:CARO_0000010 biolink:NamedThing anatomical boundary A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures. monarch-merged.owl spatial owl:Class BSPO:0000092 biolink:NamedThing anatomical compartment boundary monarch-merged.owl FBql:00005881 to be merged into CARO spatial owl:Class BSPO:0000400 biolink:NamedThing anatomical plane A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions. monarch-merged.owl anatomical section|section|plane|cross-section|anatomical cross-section FMA:242982 These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical. spatial owl:Class BSPO:0000006 biolink:NamedThing anatomical margin Fiat anatomical region extending a short distance from the boundary of an object inwards. monarch-merged.owl margin|edge spatial owl:Class BSPO:0000070 biolink:NamedThing anatomical region A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm. monarch-merged.owl FBql:00005841 to be merged into CARO spatial owl:Class BSPO:0000031 biolink:NamedThing upper region monarch-merged.owl spatial owl:Class BSPO:0000034 biolink:NamedThing superficial region Anatomical region superficially located on the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000071 biolink:NamedThing anterior region Anatomical region anteriorly located on the body or body part. monarch-merged.owl FBql:00005848 spatial owl:Class BSPO:0000072 biolink:NamedThing posterior region Anatomical region posteriorly located on the body or body part. monarch-merged.owl FBql:00005849 spatial owl:Class BSPO:0000073 biolink:NamedThing apical region Anatomical region located on the apical end on the body or body part. monarch-merged.owl FBql:00005854 spatial owl:Class BSPO:0000074 biolink:NamedThing basal region Anatomical region located basally on the body or body part. monarch-merged.owl FBql:00005855 spatial owl:Class BSPO:0000075 biolink:NamedThing central region Anatomical region centrally located on the body or body part. monarch-merged.owl FBql:00015851 spatial owl:Class BSPO:0000076 biolink:NamedThing contralateral region monarch-merged.owl FBql:00005851 inherited from flybase cv. not clear how this would be used spatial owl:Class BSPO:0000077 biolink:NamedThing proximal region Anatomical region proximally located on the body or body part. monarch-merged.owl FBql:00005852 spatial owl:Class BSPO:0000078 biolink:NamedThing distal region Anatomical region distally located on the body or body part. monarch-merged.owl FBql:00005853 spatial owl:Class BSPO:0000079 biolink:NamedThing dorsal region Anatomical region dorsally located on the body or body part. monarch-merged.owl FBql:00005842 spatial owl:Class BSPO:0000081 biolink:NamedThing ipsilateral region monarch-merged.owl FBql:00005850 spatial owl:Class BSPO:0000082 biolink:NamedThing lateral region Anatomical region laterally located on the body or body part. monarch-merged.owl FBql:00005844 spatial owl:Class BSPO:0000083 biolink:NamedThing medial region Anatomical region medially located on the body or body part. monarch-merged.owl FBql:00005847 spatial owl:Class BSPO:0000084 biolink:NamedThing ventral region Anatomical region ventrally located on the body or body part. monarch-merged.owl FBql:00005843 spatial owl:Class BSPO:0000127 biolink:NamedThing peripheral region Anatomical region peripherally located on the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000128 biolink:NamedThing axial region monarch-merged.owl spatial owl:Class BSPO:0000009 biolink:NamedThing midsagittal plane Sagittal plane that divides bilateral body into equal left and right parts. monarch-merged.owl median sagittal plane|midline plane|median plane|midsagittal section FMA:74563 only in bilaterally symmetrical organisms spatial owl:Class BSPO:0000417 biolink:NamedThing sagittal plane Anatomical plane that divides a bilateral body into left and right parts, not necessarily of even size. monarch-merged.owl median plane|sagittal section|left/right plane FMA:11361 spatial owl:Class BSPO:0000010 biolink:NamedThing anatomical axis A straight line through space, intersecting an anatomical entity. monarch-merged.owl http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG Axis directions are defined in terms of axes. spatial owl:Class OBO:CARO_0000008 biolink:NamedThing anatomical line A one dimensional, immaterial anatomical entity. monarch-merged.owl spatial owl:Class BSPO:0000011 biolink:NamedThing upper-lower axis An anatomical axis determined by gravity. monarch-merged.owl superior-inferior axis spatial owl:Class BSPO:0000012 biolink:NamedThing deep-superficial axis An axis that extends from an internal position to a more external position in the body or body part. monarch-merged.owl Muscles are frequently categorized as 'deep', 'intermediate', and 'superficial'. spatial owl:Class BSPO:0000013 biolink:NamedThing anterior-posterior axis An axis that extends through an organism from head end to opposite end of body or tail. monarch-merged.owl cephalocaudal axis|rostral/caudal|longitudinal axis|anteroposterior axis|A-P axis|AP axis|craniocaudal axis|rostrocaudal axis In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM] spatial owl:Class BSPO:0000014 biolink:NamedThing apical-basal axis relative to substrate An axis that extends through an organism or organism part from the part of the organism or organism part attached to a substrate (basal) to the furthest from the attachment (apical). Note that the apical-basal axis is often used for organismal parts where there is attachment via a basal lamina or other structure. monarch-merged.owl apical/basal|longitudinal axis spatial owl:Class BSPO:0000015 biolink:NamedThing proximal-distal axis An axis that extends from the point of attachment of a structure (proximal) to the point furthest away from the plane of attachment (distal). monarch-merged.owl proximodistal|proximal/distal In some communities, proximal and distal are used when specifying the position of parts of elements that are contained within the body, such as gill arches or vertebral spines. In these cases, use of the classes medial-lateral axis or medial-external axis are more appropriate. spatial owl:Class BSPO:0000016 biolink:NamedThing dorsal-ventral axis An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body. monarch-merged.owl DV axis|anterior-posterior axis|D-V axis|dorsoventral axis spatial owl:Class BSPO:0000017 biolink:NamedThing left-right axis An axis that bisects an organism from left to right sides of body, through a sagittal plane. monarch-merged.owl right-left axis|L-R axis|LR axis|RL axis|R-L axis|dextro-sinister axis|right to left axis|left to right axis spatial owl:Class BSPO:0000195 biolink:NamedThing adaxial-abaxial axis An anatomical axis that extends from the side of the anatomical entity that is closer to an axis (adaxial) to the side that is further from the same axis (abaxial). monarch-merged.owl AA axis|dorsal-ventral axis wasila.dahdul 2013-07-02T11:20:29Z spatial owl:Class BSPO:0000196 biolink:NamedThing medial-external axis An anatomical axis that extends from the center of the body outwards or externally. monarch-merged.owl proximal-distal axis The medial-external axis could apply to a sphere-shaped body. wasila.dahdul 2013-07-02T11:21:42Z spatial owl:Class BSPO:0000199 biolink:NamedThing animal-vegetal axis An axis that extends from the animal end of an egg or early embryo to the opposite, vegetal end. In animals with yolk-bearing eggs, the vegetal end is the yolk bearing pole. (pertains to animals only - both vertebrate and invertebrate embryos). monarch-merged.owl animal/vegetal axis|A-V axis|AV axis wasila.dahdul 2013-07-02T11:30:13Z spatial owl:Class BSPO:0000018 biolink:NamedThing transverse plane Anatomical plane that divides body into anterior and posterior parts. monarch-merged.owl transverse section|axial section|axial plane|cross-section FMA:12247 spatial owl:Class BSPO:0000019 biolink:NamedThing horizontal plane Anatomical plane that divides bilateral body into dorsal and ventral parts. monarch-merged.owl horizontal anatomical plane|horizontal section|frontal plane|coronal section|frontal section FMA:52810 spatial owl:Class BSPO:0000026 biolink:NamedThing antero-dorsal region Anatomical region that overlaps the anterior and dorsal regions of a body or body part. monarch-merged.owl anterodorsal region Melissa Haendel 2009-06-15T01:01:38Z spatial owl:Class BSPO:0000027 biolink:NamedThing antero-ventral region Anatomical region that overlaps the anterior and ventral regions of a body or body part. monarch-merged.owl anteroventral region Melissa Haendel 2009-06-15T01:04:59Z spatial owl:Class BSPO:0000029 biolink:NamedThing antero-lateral region Anatomical region that overlaps the anterior and lateral regions of a body or body part. monarch-merged.owl anterolateral region Melissa Haendel 2009-06-15T01:07:18Z spatial owl:Class BSPO:0000036 biolink:NamedThing anterior-most region monarch-merged.owl anteriormost|anterior-most Melissa Haendel 2009-06-16T08:49:03Z spatial owl:Class BSPO:0000050 biolink:NamedThing antero-medial region Anatomical region that overlaps the anterior and medial regions of the body or body part. monarch-merged.owl anteromedial region Melissa Haendel 2009-09-10T08:55:32Z spatial owl:Class BSPO:0000671 biolink:NamedThing anterior margin Anatomical margin that is located on the anterior side of a body or body part. monarch-merged.owl spatial owl:Class BSPO:0000030 biolink:NamedThing postero-dorsal region Anatomical region that overlaps the posterior and dorsal regions of the body or body part. monarch-merged.owl posterodorsal region Melissa Haendel 2009-06-15T01:08:13Z spatial owl:Class BSPO:0000038 biolink:NamedThing dorsal-most region monarch-merged.owl dorsalmost|dorsal-most Melissa Haendel 2009-06-16T08:50:26Z spatial owl:Class BSPO:0000069 biolink:NamedThing dorso-medial region Anatomical region that overlaps the dorsal and medial regions of the body or body part. monarch-merged.owl dorsomedial region Melissa Haendel 2009-09-10T08:57:22Z spatial owl:Class BSPO:0000080 biolink:NamedThing dorso-lateral region Anatomical region that overlaps the dorsal and lateral regions of a body or body part. monarch-merged.owl dorsolateral region FBql:00005845 spatial owl:Class BSPO:0000679 biolink:NamedThing dorsal margin Anatomical margin that is located on the dorsal side of body or body part. monarch-merged.owl spatial owl:Class BSPO:0000035 biolink:NamedThing postero-ventral region Anatomical region that overlaps the posterior and ventral regions of a body or body part. monarch-merged.owl posteroventral region Melissa Haendel 2009-06-15T01:08:38Z spatial owl:Class BSPO:0000039 biolink:NamedThing ventral-most region monarch-merged.owl ventralmost|ventral-most Melissa Haendel 2009-06-16T08:51:07Z spatial owl:Class BSPO:0000085 biolink:NamedThing ventro-lateral region Anatomical region that overlaps the ventral and lateral regions of a body or body part. monarch-merged.owl ventrolateral region FBql:00005846 This is an example of a composition of two axis positions. spatial owl:Class BSPO:0000112 biolink:NamedThing ventro-medial region The region corresponding to the ventral region of the entity, towards the midline. monarch-merged.owl ventromedial region|medioventral region Melissa Haendel 2009-09-10T08:57:54Z spatial owl:Class BSPO:0000684 biolink:NamedThing ventral margin Anatomical margin that is located on the ventral side of the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000028 biolink:NamedThing postero-lateral region Anatomical region that overlaps the posterior and lateral regions of the body or body part. monarch-merged.owl posterolateral region Melissa Haendel 2009-06-15T01:06:01Z spatial owl:Class BSPO:0000037 biolink:NamedThing posterior-most region monarch-merged.owl posteriormost|posterior-most Melissa Haendel 2009-06-16T08:49:50Z spatial owl:Class BSPO:0000064 biolink:NamedThing postero-medial region Anatomical region that overlaps the posterior and medial regions of the body or body part. monarch-merged.owl posteromedial region Melissa Haendel 2009-09-10T08:56:39Z spatial owl:Class BSPO:0000672 biolink:NamedThing posterior margin Anatomical margin that is located on the posterior side of the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000682 biolink:NamedThing lateral margin Anatomical margin that is located on the lateral side of the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000042 biolink:NamedThing antero-medial margin Anatomical margin that is located on the antero-medial region of the body or body part. monarch-merged.owl anteromedial margin Melissa Haendel 2009-09-10T08:49:57Z spatial owl:Class BSPO:0000045 biolink:NamedThing antero-lateral margin Anatomical margin that is located on the antero-lateral region of the body or body part. monarch-merged.owl anterolateral margin Melissa Haendel 2009-09-10T08:50:37Z spatial owl:Class BSPO:0000686 biolink:NamedThing antero-dorsal margin Anatomical margin that is located on the antero-dorso region of the body or body part. monarch-merged.owl anterodorsal margin spatial owl:Class BSPO:0000688 biolink:NamedThing antero-ventral margin Anatomical margin that is located on the antero-ventral region of the body or body part. monarch-merged.owl anteroventral margin spatial owl:Class BSPO:0000683 biolink:NamedThing medial margin Anatomical margin that is located on the medial side of the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000046 biolink:NamedThing postero-medial margin Anatomical margin that is located on the postero-medial region of the body or body part. monarch-merged.owl posteromedial margin Melissa Haendel 2009-09-10T08:51:07Z spatial owl:Class BSPO:0000048 biolink:NamedThing dorso-medial margin Anatomical margin that is located on the dorso-medial region of the body or body part. monarch-merged.owl dorso-medial margin Melissa Haendel 2009-09-10T08:52:04Z spatial owl:Class BSPO:0000049 biolink:NamedThing ventro-medial margin Anatomical margin that is located on the ventro-medial region of the body or body part. monarch-merged.owl ventromedial margin Melissa Haendel 2009-09-10T08:52:48Z spatial owl:Class BSPO:0000047 biolink:NamedThing postero-lateral margin Anatomical margin that is located on the postero-lateral region of the body or body part. monarch-merged.owl posterolateral margin Melissa Haendel 2009-09-10T08:51:42Z spatial owl:Class BSPO:0000680 biolink:NamedThing dorso-lateral margin Anatomical margin that is located on the dorso-lateral region of the body or body part. monarch-merged.owl dorsolateral margin spatial owl:Class BSPO:0000685 biolink:NamedThing ventro-lateral margin Anatomical margin that is located on the ventro-lateral region of the body or body part. monarch-merged.owl ventrolateral margin This is an example of a composition of two axis positions spatial owl:Class BSPO:0000687 biolink:NamedThing postero-dorsal margin Anatomical margin that is located on the postero-dorsal region of the body or body part. monarch-merged.owl posterodorsal margin spatial owl:Class BSPO:0000689 biolink:NamedThing postero-ventral margin Anatomical margin that is located on the postero-ventral region of the body or body part. monarch-merged.owl posteroventral margin spatial owl:Class OBO:CARO_0000003 biolink:NamedThing connected anatomical structure Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome. monarch-merged.owl Note that the definition does not say 'generated exclusively by the co-ordinated expression of the organism's own genome', so this is still valid for cases where normal morphogenesis requires the actions of a facultative symbiont, or some looser dependency such as the a requirement for the presence of gut flora for normal gut development. spatial owl:Class BSPO:0000086 biolink:NamedThing anatomical compartment monarch-merged.owl FMA:9647|FBql:00005873 to be merged into CARO spatial owl:Class OBO:CARO_0000014 biolink:NamedThing cell part Anatomical structure that is part of a cell and that has a granularity level equal to that of a protein complex or higher. monarch-merged.owl cell part (CARO) cell component This is declared equivalent with GO:0044464. The definition should be co-ordinated with GO. We could obsolete the CARO class and just use the GO class. owl:Class OBO:CARO_0000040 biolink:NamedThing acellular anatomical structure An anatomical structure that has no cells or cell parts as a part. monarch-merged.owl Example. Insect cuticle, eggshell, hair. owl:Class OBO:CARO_0000042 biolink:NamedThing extraembryonic structure A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis. monarch-merged.owl MH: define as not part of embryo, or will not develop into embryo? MH: changed def to exclude cells so this class could be included in gross anatomical part. DOS: Changed to something that I think works for both vertebrates and invertebrates and that keeps the restriction to multicellular structures. Old def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue that will not contribute to the embryo.". One remaining question - perhaps zygote is too restrictive given that some organisms have parthenogenesis e.g. aphids? owl:Class OBO:CARO_0001000 biolink:NamedThing multi-cell-part structure A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part. monarch-merged.owl multi-cell-component structure Examples: a bundle of neuron projections in the brain; a region neuropil in an arthropod central nervous system; a region of cortex (preikaryal rind) in an arthropod brain. owl:Class OBO:CARO_0010000 biolink:NamedThing multicellular anatomical structure An anatomical structure that has more than one cell as a part. monarch-merged.owl Sun Feb 27 10:53:00 GMT 2011 djs93 owl:Class GO:0016020 biolink:NamedThing membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. monarch-merged.owl whole membrane|region of membrane|membrane region Wikipedia:Biological_membrane 2014-03-06T11:37:54Z GO:0098589|GO:0098805 cellular_component owl:Class GO:0045202 biolink:NamedThing synapse The junction between an axon of one neuron and a dendrite of another neuron, a muscle fiber or a glial cell. As the axon approaches the synapse it enlarges into a specialized structure, the presynaptic terminal bouton, which contains mitochondria and synaptic vesicles. At the tip of the terminal bouton is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic terminal bouton secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane. monarch-merged.owl electrotonic synapse|mixed synapse|synaptic junction Wikipedia:Chemical_synapse|NIF_Subcellular:sao914572699 cellular_component owl:Class UBERON:0000004 biolink:NamedThing nose The olfactory organ of vertebrates, consisting of nares, olfactory epithelia and the structures and skeletal framework of the nasal cavity. monarch-merged.owl peripheral olfactory organ|nose|nasal sac|olfactory apparatus|nasus|proboscis BTO:0000840|EV:0100037|EHDAA:1502|MESH:D009666|EMAPA:16542|NCIT:C12756|ZFA:0000047|galen:Nose|MA:0000281|SCTID:181195007|Wikipedia:Nose|FMA:46472|GAID:77|EV:0100370|EHDAA2:0001274|CALOHA:TS-2037|OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA|UMLS:C0028429|TAO:0000047|MAT:0000139|MIAA:0000139 http://upload.wikimedia.org/wikipedia/commons/d/d0/Canine-nose.jpg uberon owl:Class Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired[ZFA:0000047].|the organ that is specialized for smell and is part of the respiratory system|a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)[Wikipedia:Nose]. the structure of the nose varies across vertebrates. In tetrapods the nose is part of the respiratory system.[PMID:25312359] UBERON:0000021 biolink:NamedThing cutaneous appendage Anatomical projection that protrudes from the skin. Examples: hair, nail, feather, claw, hoof, horn, wattle, spur, beak, antler, bristle and some scales. monarch-merged.owl epidermal appendage|skin appendage|epidermal growth SCTID:276160000|FMA:71012|CALOHA:TS-0051 Mammary glands develop by similar mechanisms, and there is an argument for including them here (e.g. http://www.ncbi.nlm.nih.gov/pubmed/20484386), but these structures do not fit the current definition (lactiferous glands are part of the integumentary system in FMA). Note the FMA class is a subdivision of epidermis, which may be too restrictive for our purposes here. uberon owl:Class UBERON:0000061 biolink:NamedThing anatomical structure Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome. monarch-merged.owl biological structure|connected biological structure EHDAA2:0003003|FMA:67135|CARO:0000003|FMA:305751|http://dbpedia.org/ontology/AnatomicalStructure|SCTID:362889002|MA:0003000|TAO:0000037|MESH:D000825|BILA:0000003|TGMA:0001823|VHOG:0001759|AEO:0000003|ZFA:0000037|EMAPA:0|XAO:0003000|FBbt:00007001|GAID:781|AAO:0010825|HAO:0000003 uberon owl:Class UBERON:0000084 biolink:NamedThing ureteric bud An epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]|An epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]. monarch-merged.owl gemma ureterica|metanephric diverticulum|diverticulum metanephricum|metanephric bud|ureteric diverticulum|ureteric ampulla|diverticulum VHOG:0000541|BTO:0001646|UMLS:C1284058|NCIT:C34207|EHDAA:3091|EMAPA:17209|EHDAA:5917|EHDAA2:0002140|Wikipedia:Ureteric_bud|SCTID:361528000 uberon owl:Class Outgrowth of the mesonephric duct that penetrates the metanephric mesoderm and forms the ureter, renal pelvis, major and minor calyces and collecting ducts. [Embryology, See_Dudek_RW_and_Fix_JD, Third_Edition_(2004)_Philadelphia:_Lippincott_William_and_Wilkins, p.137][VHOG]|Outgrowth of the mesonephric duct that penetrates the metanephric mesoderm and forms the ureter, renal pelvis, major and minor calyces and collecting ducts[VHOG:0000541]. The first embryonic hint of a metanephros is the formation of the metanephric duct that appears as a ureteric diverticulum arising at the base of preexisting mesonephric duct. The ureteric diverticulum grows dorsally into the posterior region of the nephric ridge. Here it enlarges and stimulates the growth of metanephric tubules that come to make up the metanephric kidney. The metanephros becomes the adult kidney of amniotes, and the metanephric duct is usually called the ureter.[well established][VHOG] UBERON:0000351 biolink:NamedThing nuchal ligament A fibrous membrane, which, in the neck, represents the supraspinal ligaments of the upper vertebrae. monarch-merged.owl paddywhack|ligament of neck|ligamentum nuchae|paxwax SCTID:166962007|EMAPA:19207|Wikipedia:Nuchal_ligament|BTO:0000952|FMA:13427 uberon owl:Class In humans it is a tendon-like structure that has developed independently in humans and other animals well adapted for running. In some four legged animals, particularly ungulates, the nuchal ligament serves to sustain the weight of the head As it is required for running, not all animals have a nuchal ligament UBERON:0000372 biolink:NamedThing extensor digitorum brevis pes A muscle on the upper surface of the foot that helps extend digits 2 through 4. monarch-merged.owl musculus extensor digitorum brevis|extensor digitorum brevis muscle|extensor digitorum brevis FMA:51140|EMAPA:36258|Wikipedia:Extensor_digitorum_brevis_muscle|BTO:0001337 http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray441.png|http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png uberon owl:Class UBERON:0000378 biolink:NamedThing tongue muscle The muscular portion of the tongue. monarch-merged.owl tongue skeletal muscle|tongue skeletal muscle tissue|musculi linguae|muscle of tongue|skeletal muscle tissue of tongue|muscle organ of tongue UMLS:C0448325|UMLS:C1710437|EHDAA:9146|MA:0001596|Wikipedia:Muscles_of_tongue|VHOG:0001390|EHDAA2:0002065|NCIT:C52707|NCIT:C49301|BTO:0001386|EMAPA:17883|SCTID:244781004|FMA:46689 http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray1019.png uberon owl:Class The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG] UBERON:0000381 biolink:NamedThing urinary bladder detrusor smooth muscle Bundles of smooth muscle fibers forming the muscular wall of the urinary bladder, which are arranged in a longitudinal and a circular layer and, on contraction, serve to expel urine[MP]. monarch-merged.owl detrusor|musculus detrusor vesicae|musculus detrusor vesicae urinariae|detrusor muscle|urinary bladder detrusor muscle|detrusor muscle of bladder|detrusor smooth muscle|urinary bladder detrussor smooth muscle|detrusor urinae muscle|muscularis propria|muscularis propria of the urinary bladder SCTID:279414008|EMAPA:28637|MA:0001698|Wikipedia:Detrusor_urinae_muscle|FMA:68018|NCIT:C62404|BTO:0001453 Illu:bladder.jpg uberon owl:Class UBERON:0000642 biolink:NamedThing suspensory ligament of duodenum A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery. monarch-merged.owl musculus suspensorius duodeni|ligament of Treitz|muscle of Treitz|suspensory muscle of duodenum SCTID:279979000|FMA:20509|Wikipedia:Suspensory_muscle_of_duodenum http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray1042.png uberon owl:Class UBERON:0000915 biolink:NamedThing thoracic segment of trunk Subdivision of trunk that lies between the head and the abdomen. monarch-merged.owl anterior subdivision of trunk|thorax|upper body|upper trunk Wikipedia:Thorax|MA:0000022|FMA:259209|SCTID:302551006|EMAPA:35862 note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest uberon owl:Class UBERON:0000951 biolink:NamedThing rotator muscle of the vertebral column Any of a number of short transversospinal muscles chiefly developed in cervical, lumbar, and thoracic regions, arising from the transverse process of one vertebra and inserted into the root of the spinous process of the next two or three vertebrae above, with nerve supply from the dorsal branches of the spinal nerve, and whose actions rotate the vertebral column. monarch-merged.owl rotator muscle FMA:23081|SCTID:244872002 uberon owl:Class UBERON:0000964 biolink:NamedThing cornea the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure|The transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure. monarch-merged.owl corneas|cornea of camera-type eye|tunica cornea MA:0000266|EMAPA:17161|VHOG:0000164|BTO:0000286|NCIT:C12342|EFO:0000377|ZFA:0000640|GAID:892|MESH:D003315|SCTID:181162001|FMA:58238|EV:0100341|TAO:0000640|XAO:0000180|EHDAA2:0000316|CALOHA:TS-0171|Wikipedia:Cornea|AAO:0010344|EHDAA:10199|OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA|UMLS:C0010031 http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg uberon owl:Class corneal Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals. In fish, and aquatic vertebrates in general, the cornea plays no role in focusing light, since it has virtually the same refractive index as water UBERON:0000965 biolink:NamedThing lens of camera-type eye Transparent part of camera-type eye that helps to refract light to be focused on the retina. monarch-merged.owl crystalline lens|camera-type eye lens|eye lens|lens crystallina|ocular lens|lens|lenses UMLS:C0023317|SCTID:181169005|VHOG:0000169|MIAA:0000141|EHDAA:9057|CALOHA:TS-0545|MA:0000275|EV:0100343|OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA|BTO:0000723|MESH:A09.371.509|Wikipedia:Lens_(anatomy)|AAO:0010348|NCIT:C12743|TAO:0000035|FMA:58241|RETIRED_EHDAA2:0000975|ZFA:0000035|EMAPA:17838|XAO:0000008|MAT:0000141 The lens is avascular and nourished by diffusion from the aqueous and vitreous uberon owl:Class The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG] This class excludes compound eye corneal lenses. UBERON:0001100 biolink:NamedThing pectoralis minor The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]. monarch-merged.owl musculus pectoralis minor|supracoracoideus muscle|pectoralis minor muscle|supracoracoideus VHOG:0000902|FMA:13109|MA:0002355|EMAPA:18180|EHDAA:8313|EHDAA2:0001425|NCIT:C33285|Wikipedia:Pectoralis_minor_muscle|SCTID:181625002|UMLS:C0224347 Pectoralis:minor.png uberon owl:Class UBERON:0001103 biolink:NamedThing diaphragm A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control.|A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control monarch-merged.owl midriff|phren|diaphragm muscle|thoracic diaphragm|diaphragm of thorax EMAPA:17701|SCTID:181614006|GAID:158|FMA:13295|MAT:0000502|NCIT:C12702|EV:0100376|Wikipedia:Thoracid_diaphragm|MESH:D003964|OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA|EHDAA2:0003495|MA:0001904|VHOG:0000713|BTO:0000341|EFO:0000937|UMLS:C0011980|CALOHA:TS-0198 uberon owl:Class The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]. The mammals are characterized by a diaphragm, which separates the thoracic portion of the body cavity from the abdominal region and assists in drawing air into the lungs and forcing it out. Modern reptiles lack a muscular diaphragm and it is reasonable to suppose that the diaphragm developed as a new device that made possible a large degree of oxygen intake for active animals. The change may have taken place during the transition from reptile to mammal (...).[well established][VHOG] phrenic The urochordate epicardium separates digestive organs from the pharynx and heart, but the anus returns to the upper compartment to discharge wastes through an outgoing siphon (Thoracic_diaphragm#Comparative_anatomy_and_evolution)|The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3] breathing control|barrier between thoracic and abdominal cavities; stop gastric contents from refluxing into the oesophagus originate from the cervical somites, likely C3-C5[PMID:23586979] UBERON:0001111 biolink:NamedThing intercostal muscle The respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib. monarch-merged.owl musculus intercostalis|intercostales|respiratory muscle|rib muscle UMLS:C0021724|EMAPA:18521|VHOG:0000903|GAID:159|NCIT:C32824|MA:0002324|Wikipedia:Intercostal_muscle|EHDAA2:0000841|EFO:0001368|BTO:0005281|OpenCyc:Mx4rwQo8QJwpEbGdrcN5Y29ycA|EHDAA:5988|MA:0003165|SCTID:181746004|FMA:13354|MESH:D007366 http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png uberon owl:Class Inspiration by active expansion of the thorax evolved later, in the ancestor of reptiles, birds, and mammals. This was powered originally by the intercostal muscles (as in lizards or crocodilians) and later (in mammals only) by a muscular diaphragm.[well established][VHOG] UBERON:0001121 biolink:NamedThing longus colli muscle The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]. monarch-merged.owl longi colli|musculus longus colli|longus colli|longus colli muscle NCIT:C52959|MA:0002341|FMA:13370|Wikipedia:Longus_colli_muscle|EMAPA:37654|SCTID:244836009|UMLS:C0224169 Longus:colli.png uberon owl:Class UBERON:0001123 biolink:NamedThing scalenus posterior The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]. monarch-merged.owl posterior scalene muscle|scalenus dorsalis|scalenus dorsalis muscle|musculus scalenus posterior|posterior scalene NCIT:C52985|FMA:13387|UMLS:C1710019|Wikipedia:Scalenus_posterior|MA:0002369|EMAPA:37737 Scalenus:posterior.png uberon owl:Class UBERON:0001221 biolink:NamedThing transversus abdominis muscle The lateral abdominal wall muscle that is deep to the internal oblique. monarch-merged.owl transverse abdominal muscle|transversus abdominus muscle|transversalis muscle|transverse abdominis|transversus|transversus abdominis|transverse abdominal|musculus transversus abdominis|transversalis|transverse abdominus|transversis abdominus|transversus abdominus VHOG:0000845|UMLS:C0224378|EMAPA:18165|EHDAA:8254|SCTID:244949003|EHDAA2:0002078|MA:0002396|FMA:15570|NCIT:C53179|Wikipedia:Transversus_abdominis_muscle http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg uberon owl:Class One of a pair of transverse abdominal muscles that is the anterolateral muscle of the abdomen, lying immediately under the internal abdominal oblique. [TFD][VHOG] Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] UBERON:0001247 biolink:NamedThing falciform ligament A ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]. monarch-merged.owl ligamentum falciforme hepatis|falciform ligament of liver|ligamentum falciforme (hepatis) EHDAA:4856|FMA:15823|MA:0001622|EHDAA2:0000499|UMLS:C0230240|SCTID:362705001|EMAPA:18288|Wikipedia:Falciform_ligament|NCIT:C32582|VHOG:0000355 uberon owl:Class in FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament UBERON:0001326 biolink:NamedThing levator ani muscle The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]. monarch-merged.owl levator ani|musculus levator ani SCTID:181753008|UMLS:C0224384|NCIT:C32984|Wikipedia:Levator_ani|EMAPA:19165|FMA:19087|MA:0002332 http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png uberon owl:Class the levator ani muscle acts to lower the tail, in animals that have one UBERON:0001327 biolink:NamedThing coccygeus muscle The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]. monarch-merged.owl musculus coccygeus|musculus ischiococcygeus|coccygeus|ischiococcygeus Wikipedia:Coccygeus_muscle|FMA:19088|EMAPA:37482|MA:0002277 http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png uberon owl:Class UBERON:0001339 biolink:NamedThing ischiocavernosus muscle The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]. monarch-merged.owl ischiocavernosi|erector penis|musculus ishiocavernosus|ishiocavernosus|ishiocavernosus muscle|ischiocavernous muscle|ischiocavernosus NCIT:C52946|SCTID:244975004|MA:0002330|FMA:19730|EMAPA:37455|Wikipedia:Ischiocavernosus_muscle|UMLS:C0224401 http://upload.wikimedia.org/wikipedia/commons/c/c0/Ischiocavernosus-female.png uberon owl:Class UBERON:0001366 biolink:NamedThing parietal peritoneum The outer layer of peritoneum that is attached to the abdominal and pelvic walls. monarch-merged.owl peritoneal cavity lining|parietal serous membrane of peritoneum VHOG:0001527|SCTID:362700006|FMA:21451|TAO:0005131|ZFA:0005131|AAO:0010816|Wikipedia:Parietal_peritoneum|EMAPA:16591 http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png UBERON:0004459 uberon owl:Class Peritoneum attached to the abdominal wall.[AAO] UBERON:0001369 biolink:NamedThing iliacus muscle The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]. monarch-merged.owl iliacus|musculus iliacus|anterior muscle of pelvic girdle|iliacus muscle UMLS:C0224418|Wikipedia:Iliacus_muscle|SCTID:244956009|NCIT:C32762|FMA:22310|MA:0002318|EMAPA:19164 http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG uberon owl:Class AAO has iliacus major and minor, both of which attach to ilium and femur - consider grouping these somehow UBERON:0001371 biolink:NamedThing gluteus medius One of three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]. monarch-merged.owl gluteus medius muscle|musculus gluteus medius galen:GluteusMedius|MA:0002310|SCTID:181675000|UMLS:C0224425|EMAPA:19163|FMA:22315|NCIT:C52933|Wikipedia:Gluteus_medius_muscle http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG uberon owl:Class A&P heads in rat, single head in humans[DOI:10.1002/ar.22919] UBERON:0001373 biolink:NamedThing sartorius muscle The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle. monarch-merged.owl sartorius|M. sartorius|ambliens|musculus sartorius NCIT:C33515|EMAPA:37693|EHDAA:10583|UMLS:C0224434|EHDAA2:0001776|Wikipedia:Sartorius_muscle|MA:0002368|galen:Sartorius|BTO:0001215|FMA:22353|SCTID:181683006|VHOG:0001192 http://upload.wikimedia.org/wikipedia/commons/a/af/Sartorius.png We do NOT group this AAO class here at this stage until further evidence of shared attachments uberon owl:Class The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius.[well established][VHOG] The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius. Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.391 [VHOG:0001192]|No iliotibialis in AAO - M. sartorius has def: 'Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis.' [AAO:0010027] UBERON:0001376 biolink:NamedThing tensor fasciae latae muscle The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]. monarch-merged.owl tensor fasciae lata|tensor fasciae lata muscle|tensor fasciae latae|musculus tensor fasciae latae|tensor of fascia lata NCIT:C53072|FMA:22423|EMAPA:35855|SCTID:181671009|UMLS:C1384497|Wikipedia:Tensor_fasciae_latae_muscle|MA:0002391 Anatomical:dissection5.JPG|http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG uberon owl:Class UBERON:0001377 biolink:NamedThing quadriceps femoris One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). monarch-merged.owl quadriceps muscle|quadriceps muscle of the thigh|quadriceps muscle of thigh|musculus quadriceps femoris|quadricep muscle|quadriceps|quadriceps femoris muscle UMLS:C0224440|NCIT:C33441|galen:QuadricepsFemoris|BTO:0001149|EMAPA:19146|MA:0002363|FMA:22428|EHDAA2:0001583|Wikipedia:Quadriceps_femoris_muscle|EHDAA:8299|SCTID:181669009|VHOG:0000828|OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA|EFO:0001938 http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg uberon owl:Class The quadriceps is a collective term for the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Kardong_KV, Vertebrates:_Comparative_Anatomy, p.391][VHOG] UBERON:0001385 biolink:NamedThing tibialis anterior A muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]. monarch-merged.owl tibilais cranialis|tibialis anterior muscle|anterior tibialis|tibialis cranialis|ibialis anticus|musculus tibialis anterior NCIT:C53079|MA:0002395|FMA:22532|EMAPA:35866|BTO:0001382|UMLS:C1710423|Wikipedia:Tibialis_anterior_muscle|galen:TibialisAnterior|SCTID:181696007|EFO:0001385 http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png uberon owl:Class UBERON:0001386 biolink:NamedThing extensor digitorum longus A penniform muscle of the lateral front part of the hindlimb responsible for extension of the digits and dorsiflexion of the ankle. monarch-merged.owl extensor digitorum longus muscle|toe extensor|musculus extensor digitorum longus|toe extensor muscle EMAPA:35330|NCIT:C52918|BTO:0000436|UMLS:C0224464|Wikipedia:Extensor_digitorum_longus_muscle|MA:0002295|FMA:22534 http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png uberon owl:Class UBERON:0001388 biolink:NamedThing gastrocnemius The most superficial muscle of the triceps surae group, in the posterior portion of the lower hindleg. monarch-merged.owl m.gastrocnemius|musculus gastrocnemius|gastrocnemius muscle|m. gastrocnemius EHDAA2:0000701|Wikipedia:Gastrocnemius_muscle|EFO:0001413|MA:0002306|VHOG:0001193|BTO:0000506|EMAPA:35375|EHDAA:8293|NCIT:C32666|FMA:22541|SCTID:181700004|galen:Gastrocnemius|UMLS:C0242691 http://upload.wikimedia.org/wikipedia/commons/8/8e/Gastrocnemius.png uberon owl:Class The most superficial calf muscle in the posterior part of the leg. [TFD][VHOG] The most prominent ventral muscle of the shank is the gastrocnemius, the 'calf' muscle. In mammals, it has two heads, resulting from the fusion of two different phylogenetic predecessors.[well established][VHOG] In mammals this muscle has two heads[ISBN:0073040584] involved in standing, walking, running and jumping UBERON:0001389 biolink:NamedThing soleus muscle A deep muscle of the triceps surae group, in the superficial posterior compartment of the leg. monarch-merged.owl soleus galen:Soleus|MA:0002424|BTO:0001265|EFO:0001946|FMA:22542|UMLS:C0242694|EMAPA:35786|NCIT:C53075|Wikipedia:Soleus_muscle|SCTID:181702007 http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg uberon owl:Class soleal responsible for plantar flexion of the foot UBERON:0001391 biolink:NamedThing popliteus muscle The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]. monarch-merged.owl m.popliteus|popliteal|musculus popliteus|poplitea|popliteus|popliteal muscle EMAPA:36240|NCIT:C33340|UMLS:C0224457|Wikipedia:Popliteus_muscle|SCTID:245032004|FMA:22590|MA:0002554 http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray439.png uberon owl:Class UBERON:0001392 biolink:NamedThing flexor hallucis longus A deep muscle of the posterior compartment of the hindlimb that is innervated by the tibial nerve, arises from the fibula and insets in the distal phalanx of pedal digit 1. monarch-merged.owl flexor hallucis longus muscle NCIT:C52925|UMLS:C0224473|EMAPA:37588|FMA:22593|Wikipedia:Flexor_hallucis_longus_muscle|MA:0002301|SCTID:361826009 http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png uberon owl:Class UBERON:0001482 biolink:NamedThing muscle of shoulder Any muscle organ that is part of a shoulder [Automatically generated definition]. monarch-merged.owl shoulder muscle|shoulder muscle organ|muscle organ of shoulder EMAPA:36154|FMA:33531|MA:0000633 uberon owl:Class UBERON:0001501 biolink:NamedThing lumbrical muscle of manus The lumbricals are intrinsic muscles of the manus that flex the metacarpophalangeal joints and extend the interphalangeal joints. monarch-merged.owl musculi lumbricales manus|hand lumbrical|lumbrical muscle of hand|hand lumbrical muscle|lumbrical of hand MA:0002316|SCTID:181654008|FMA:37385|Wikipedia:Lumbricals_of_the_hand|EMAPA:36217 uberon owl:Class UBERON:0001507 biolink:NamedThing biceps brachii A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]. monarch-merged.owl biceps muscle|biceps|musculus biceps brachii|biceps brachii muscle|biceps brachii %26 brachialis muscles|biceps cubiti EHDAA2:0000167|Wikipedia:Biceps_brachii_muscle|EHDAA:8279|BTO:0003419|FMA:37670|VHOG:0000861|NCIT:C32200|UMLS:C0559499|MA:0002269|EMAPA:19108|SCTID:265802004 https://upload.wikimedia.org/wikipedia/commons/5/5d/Biceps_brachii_muscle06.png uberon owl:Class UBERON:0001520 biolink:NamedThing pronator teres The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]. monarch-merged.owl pronator teres muscle|musculus pronator teres SCTID:302514000|Wikipedia:Pronator_teres_muscle|NCIT:C53174|MA:0002357|FMA:38450|UMLS:C0224249|EMAPA:36207 http://upload.wikimedia.org/wikipedia/commons/8/87/Pronator-teres.png uberon owl:Class UBERON:0001521 biolink:NamedThing flexor carpi radialis muscle A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]. monarch-merged.owl flexor carpi radialis UMLS:C0224252|Wikipedia:Flexor_carpi_radialis_muscle|NCIT:C53155|FMA:38459|AAO:0010733|SCTID:361816002|MA:0002297|EMAPA:36197 http://upload.wikimedia.org/wikipedia/commons/5/59/Flexor-carpi-radialis.png uberon owl:Class Muscle which originates on the inner border of the humerus and inserts on the carpus.[AAO] we group the AAO class here, despite the different insertion site - requires vetting: Muscle which originates on the inner border of the humerus and inserts on the carpus. [AAO:0010733] UBERON:0001522 biolink:NamedThing flexor carpi ulnaris muscle The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]. monarch-merged.owl flexor carpi ulnaris|musculus flexor carpi ulnaris FMA:38465|SCTID:244985003|MA:0002298|NCIT:C53156|EMAPA:36198|UMLS:C0224254|Wikipedia:Flexor_carpi_ulnaris_muscle http://upload.wikimedia.org/wikipedia/commons/c/c1/FCU.png uberon owl:Class AAO has a class with the same name, the exact insertion point is unclear; consider grouping :Muscle which originates from the medial condyle of the humerus and inserts on the carpus. [AAO:0010734] UBERON:0001523 biolink:NamedThing flexor digitorum profundus A muscle in the forearm that flexes the manual digits[WP,modified]. monarch-merged.owl flexor digitorum profundus muscle|musculus flexor digitorum profundus NCIT:C52923|BTO:0001246|Wikipedia:Flexor_digitorum_profundus_muscle|EMAPA:19319|UMLS:C0224261|FMA:38478|MA:0002300 http://upload.wikimedia.org/wikipedia/commons/2/24/Flexor-digitorum-profundis.png uberon owl:Class in EMAPA, this is part of the leg, which is presumably a mistake UBERON:0001527 biolink:NamedThing abductor pollicis longus The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]. monarch-merged.owl musculus abductor pollicis longus|abductor pollicis longus muscle SCTID:256671001|FMA:38515|MA:0002266|EMAPA:36210|UMLS:C0224278|Wikipedia:Abductor_pollicis_longus_muscle|NCIT:C52888 http://upload.wikimedia.org/wikipedia/commons/6/66/Gray1231.png uberon owl:Class UBERON:0001566 biolink:NamedThing cricothyroid muscle Intrinsic muscle of the larynx, innervated by the external division of the laryngeal nerve, a branch of the vagus nerve. It attaches to the anterolateral surface of the cricoid cartilage and the external surface of the thyroid cartilage. monarch-merged.owl M. cricothyroideus|musculus cricothyroideus|cricothyroid|cricothyroideus Wikipedia:Cricothyroid_muscle|NCIT:C32404|MFMO:0000324|MA:0002284|FMA:46417|UMLS:C0224178|EMAPA:19270|SCTID:244809007 http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png uberon owl:Class UBERON:0001595 biolink:NamedThing auricular muscle A muscle that is part of the pinna and is attached to the auricular cartilage. monarch-merged.owl auriculares muscles|musculi auriculares|attrahens aurem muscle|muscle of auricle|temporoparietalis|auricularis muscle|auriculares|auriculares anterior|attolens aurem muscle|auricularis|auriclular|auricularis muscles MA:0001229|EMAPA:35159|FMA:48966|Wikipedia:Auricular_muscles|SCTID:244757006 http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png uberon owl:Class In some mammals these muscles can adjust the direction of the pinna. In humans these muscles possess very little action. The auricularis anterior draws the auricula forward and upward; the Auricularis superior slightly raises it; and the Auricularis posterior draws it backward. UBERON:0001604 biolink:NamedThing levator palpebrae superioris The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]. monarch-merged.owl MA:0001272|UMLS:C0224134|EMAPA:36652|FMA:49041|SCTID:244774006|NCIT:C52802|Wikipedia:Levator_palpebrae_superioris http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png uberon owl:Class UBERON:0001607 biolink:NamedThing sphincter pupillae A sphincter muscle that is part of the iris. monarch-merged.owl M. sphincter pupillae|iris constrictor|iris sphincter|m. sphincter pupillae|constrictor pupillae|circular fibers|pupillary sphincter muscle|spincter pupillae|sphincter pupillae muscle|sphincter muscle of pupil|sphincter pupillae|pupillary sphincter|iris sphincter muscle|iris constrictor muscle|musculus sphincter pupillae|pupillary constrictor muscle Wikipedia:Iris_sphincter_muscle|NCIT:C33586|UMLS:C0229189|FMA:49157|MA:0001289|BTO:0000656|SCTID:280889004|EMAPA:35788 http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png uberon owl:Class WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure|In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted] constricts iris UBERON:0001608 biolink:NamedThing dilatator pupillae A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]. monarch-merged.owl radial muscle of iris|musculus dilatator pupillae|pupillary dilator muscle|iris dilator|pupil dilator muscle|musculus dilator pupillae|pupil dilator|dilator pupillae muscle|iris dilator muscle|pupillary dilator|dilator muscle of pupil|pupillary muscle|radial muscle|dilator pupillae|dilator of pupil|radiating fibers EMAPA:35286|NCIT:C32463|MA:0001288|FMA:49158|BTO:0001371|UMLS:C0229190|SCTID:280890008|Wikipedia:Iris_dilator_muscle http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png uberon owl:Class It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina UBERON:0001665 biolink:NamedThing triceps surae The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5-S2. [WP,unvetted]. monarch-merged.owl musculus triceps surae|gastrosoleus|sural triceps|calf muscle|gastrosoleus complex Wikipedia:Triceps_surae_muscle|EMAPA:36267|UMLS:C0224458|MA:0002400|NCIT:C53181|FMA:51062 http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg uberon owl:Class A set of muscles in FMA, a single organ in MA UBERON:0001666 biolink:NamedThing flexor digitorum longus The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]. monarch-merged.owl EMAPA:36248|FMA:51071|SCTID:181703002|BTO:0000466|NCIT:C52921|Wikipedia:Flexor_digitorum_longus|MA:0002299|UMLS:C1261048 http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png uberon owl:Class UBERON:0001667 biolink:NamedThing tibialis posterior The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]. monarch-merged.owl ibialis posticus|musculus tibialis posterior|tibialis caudalis|posterior tibialis|tibialis posterior muscle NCIT:C53078|Wikipedia:Tibialis_posterior_muscle|FMA:51099|UMLS:C1711425|EMAPA:36255|SCTID:361824007|BTO:0000867|MA:0002394 http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png uberon owl:Class UBERON:0001708 biolink:NamedThing jaw skeleton Subdivision of skeleton which includes upper and lower jaw skeletons. monarch-merged.owl pharyngeal arch 1 skeleton|visceral arch 1|jaw|mandibular arch skeleton|jaw cartilage|anterior splanchnocranium|jaws|oral jaw skeleton|mandibular arch SCTID:181811001|AAO:0000988|UMLS:C0022359|FMA:54396|TAO:0001227|ZFA:0001227|MA:0001905|OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA|BTO:0001749|EMAPA:35455|galen:Jaw|GAID:214|MESH:D007568|NCIT:C48821|Wikipedia:Jaw TODO - move ZFA:0001227 (it is the entire jaw skeleton). uberon owl:Class Skeletal and cartilage elements of the first pharyngeal arch.[TAO] There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983). in FMA, the jaw is an organism subdivision cluster, and includes mucosal tissue such as the gingiva as parts. It appears to be skeletal in MA (and has teeth as parts). It is reasonable to assume that ZFA and XAO consider the upper and lower jaws to be skeletal elements or clusters. EHDAA2 also considers these clusters. TODO - follow EHDAA2 model. These arbitrary differences in terminology and classification have to be reconciled with the genuine well-known biological differences in the skeletal elements across vertebrates UBERON:0001709 biolink:NamedThing upper jaw region Subdivision of head that consists of the upper jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]. monarch-merged.owl maxillary part of mouth proper|alveolodental arch of bimaxilla|palatoquadrate arch|dorsal mandibular arch|upper pharyngeal jaws|dorsal pharyngeal arch 1|maxillary part of mouth VHOG:0000454|FMA:59399|ncithesaurus:Upper_Jaw|EMAPA:17924|SCTID:362636001|EHDAA:8025|AAO:0000620|Wikipedia:Upper_jaw|EHDAA2:0004607|EHDAA2:0002118 See notes for jaw w.r.t skeletal element vs subdivision of head. http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png uberon owl:Class Superior maxillary arch located on the anterior and lateral sides of the skull.[AAO] Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] Note isa/partof difference MA/FMA UBERON:0001710 biolink:NamedThing lower jaw region Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]. monarch-merged.owl mandibular part of mouth|mandibular series|lower part of mouth MESH:D008334|EHDAA2:0001018|EFO:0003660|Wikipedia:Lower_jaw|SCTID:362637005|AAO:0000272|VHOG:0000453|FMA:59398|EMAPA:17906|EHDAA:7995|ncithesaurus:Lower_Jaw See notes for jaw w.r.t skeletal element vs subdivision of head http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png uberon owl:Class Inferior mandibular arch located on the anterior and lateral sides of the skull.[AAO] Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] Note isa/partof difference MA/FMA UBERON:0001737 biolink:NamedThing larynx A continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration. monarch-merged.owl EV:0100039|EMAPA:18333|XAO:0003081|AAO:0000268|SCTID:181212004|MESH:D007830|Wikipedia:Larynx|FMA:55097|MIAA:0000187|galen:Larynx|MAT:0000187|EFO:0000838|OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA|BTO:0001208|MA:0000414|NCIT:C12420|EHDAA2:0004063|CALOHA:TS-0532|GAID:108|VHOG:0001279|UMLS:C0023078 http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg uberon owl:Class Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]|An anatomical cluster consisting of the epiglottus, the arytenoid cartilages, the thyroid cartilage, the cricoid cartilage and the muscles, membranes, and ligaments connecting them, and also of the mucosal covering these structures.[FEED] (In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG] laryngeal UBERON:0001999 biolink:NamedThing iliopsoas Anatomical cluster consisting of the iliacus and the psoas major[WP]. monarch-merged.owl illopsoas|musculus iliopsoas|iliopsoas muscle|ilio-psoas|Hyrtl's muscle VHOG:0001005|EHDAA:9458|FMA:64918|MA:0002321|Wikipedia:Iliopsoas|SCTID:181668001|EHDAA2:0000812|NCIT:C32764|EMAPA:18520|BTO:0000621|UMLS:C0224417 http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG uberon https://github.com/obophenotype/uberon/issues/478 owl:Class UBERON:0002018 biolink:NamedThing synovial membrane of synovial joint Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints). monarch-merged.owl synovial layer of articular capsule of synovial joint|synovial membrane of articular capsule of synovial joint|synovium of articular capsule of synovial joint|membrana synovialis (capsula articularis)|membrana synovialis capsulae articularis|stratum synoviale (capsula articularis)|synovial layer|synovial membrane|synovium|stratum synoviale UMLS:C0039099|AEO:0000181|GAID:264|SCTID:361828005|BTO:0001823|VHOG:0001282|EFO:0001393|NCIT:C12473|EV:0100143|EHDAA2_RETIRED:0003181|MA:0000114|MESH:D013583|EMAPA:37476|Wikipedia:Synovial_membrane|FMA:9865|galen:SynovialMembrane http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png|http://upload.wikimedia.org/wikipedia/commons/5/5d/Synovium.png uberon owl:Class Phylogenetically, synovium is one of the newer attributes of the vertebrate locomotor apparatus. The first synovial joints developed in the piscine jaw of ancestors of modern lungfish by an evolutionary process that modified preexisting fibrous and cartilaginous joints, which were the predominant articulation of the early sea- and land-dwelling vertebrates.[well established][VHOG] UBERON:0002033 biolink:NamedThing arrector muscle of hair A tiny smooth muscle that connects the hair follicle with the dermis. monarch-merged.owl arrector pilorum|erectores pilorum|arrector pilli|pilomotor muscle|arrector pili smooth muscle|arectores pilorum|arrector pilli muscle|arrector pili muscle|arrector pili|arrector pilorum muscle of hair|erector pili SCTID:319910005|BTO:0005132|MA:0000778|EMAPA:26775|FMA:67821|Wikipedia:Arrector_pili_muscle uberon owl:Class When contracted the arrector pili causes the raising of the hair UBERON:0002133 biolink:NamedThing atrioventricular valve A cardial valve in the atrioventricular region that separates the atrium from the ventricle and prevent backflow from the ventricles into the atria during systole. monarch-merged.owl AV valve|atrio-ventricular valve MA:0002789|SCTID:11124005|ZFA:0005064|EHDAA:7421|Wikipedia:Heart_valve#Atrioventricular_valves|EHDAA2:0000153|OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg|galen:AtrioventricularValve|VHOG:0001472|EMAPA:35154|FMA:7233|TAO:0005064 uberon owl:Class The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001.[TAO]|Valve in the heart through which blood flows from the atria to the ventricles. [TFD][VHOG] The conus arteriosus is the most distal part of the primitive fish heart and forms the connection between the ventricle and the ventral aorta. At the sinoatrial, the atrioventricular, and the ventriculoconal junctions, valves developed to prevent backflow of blood during relaxation of the preceding compartment.[uncertain][VHOG] in ZFA this is part of both atrium and ventricle, but we use a connecting relationship here; see also notes for left and right. UBERON:0002233 biolink:NamedThing tectorial membrane of cochlea The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified]. monarch-merged.owl tectorial membrane|tectorial membrane of spiral organ of cochlea SCTID:368960006|NCIT:C33740|UMLS:C1184928|BIRNLEX:2531|FMA:75805|MESH:A09.246.631.246.292.906|UMLS:C0039432|GAID:876|EMAPA:35851|MA:0001199|Wikipedia:Tectorial_membrane_(cochlea) uberon owl:Class The tectorial membrane (TM) is one of two acellular gels in the cochlea of the inner ear, the other being the basilar membrane (BM). The TM is located above the sulcus spiralis internus and the spiral organ of Corti and extends along the longitudinal length of the cochlea parallel to the BM. Radially the TM is divided into three zones, the limbal, middle and marginal zones. Of these the limbal zone is the thinnest (transversally) and overlies the auditory teeth of Huschke with its inside edge attached to the spiral limbus. The marginal zone is the thickest (transversally) and is divided from the middle zone by Hensen's Stripe. It overlies the sensory inner hair cells and electrically-motile outer hair cells of the organ of Corti and during acoustic stimulation stimulates the inner hair cells through fluid coupling, and the outer hair cells via direct connection to their tallest stereocilia[Wikipedia:Tectorial_membrane_(cochlea)]. in some squamate lineages, the tectorial membrane may not cover the whole cochlear duct/papilla. In some lineages, the tectorial membrane is divided into units called sallets[ISBN:9780387714691] UBERON:0002348 biolink:NamedThing epicardium A region of the serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart.|a region of the serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart. monarch-merged.owl visceral serous pericardium of heart|visceral serous pericardium proper|pericardium visceral mesothelium|heart epicardium EHDAA2:0002202|VHOG:0000119|NCIT:C13164|XAO:0000316|UMLS:C0225968|TAO:0005057|Wikipedia:Epicardium|galen:Epicardium|FMA:9461|ZFA:0005057|AAO:0010409 TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer. uberon owl:Class External layer of the heart.[TAO]|The inner layer of the pericardium that is in contact with the surface of the heart.[AAO] The visceral pericardium apparently produces the pericardial fluid, which lubricates motion between the inner and outer layers of the pericardium. During ventricular contraction, the wave of depolarization moves from endocardial to epicardial surface. [Wikipedia:Epicardium] UBERON:0002357 biolink:NamedThing serous pericardium Serous membrane which is divided into parietal and visceral serous pericardium. monarch-merged.owl pericardium serosum|serous portion of pericardium FMA:9582|Wikipedia:Serous_pericardium|SCTID:243954002|EMAPA:19030|MA:0002739 uberon owl:Class UBERON:0002376 biolink:NamedThing cranial muscle Any skeletal muscle that is part of the head region. monarch-merged.owl head muscle|cephalic musculature|head muscle organ|cephalic muscle|adult head muscle organ|head muscles|cranial muscle|muscle of head|muscle organ of adult head|musculus caput|muscle organ of head FMA:9616|EFO:0003524|EMAPA:18172|SCTID:244718003|BTO:0000021|AAO:0000107|MA:0000578|ZFA:0001652|EHDAA2:0000322 defined generically so could in theory encompass FBbt:00003260 'skeletal muscle of head', or the muscle of a starfish Aristotle's lantern, but we restrict this to craniates. Skeletal muscles of the head originate from the non-segmented head mesoderm (Noden, 1983; Wachtler et al., 1984) UBERON:0003899 uberon owl:Class UBERON:0002400 biolink:NamedThing parietal pleura The outer serous membrane of the pulmonary pleural. monarch-merged.owl pleura parietalis MA:0002488|OpenCyc:Mx4rvv2Uq5wpEbGdrcN5Y29ycA|Wikipedia:Parietal_pleura|SCTID:361998003|NCIT:C33273|VHOG:0001495|UMLS:C0225777|FMA:9733|EMAPA:16776 the part of the pleura external to the visceral pleura. It lines the inner surface of the chest wall, covers the diaphragm, and is reflected over the structures occupying the middle of the thorax uberon owl:Class UBERON:0002401 biolink:NamedThing visceral pleura The inner serous membrane of the pulmonary pleural. The visceral pleura lines the lungs. monarch-merged.owl pleura pulmonalis|lung pleura|pleura visceralis (pulmonalis)|pulmonary pleura|pleura visceralis|lung mesothelium|pulmonary visceral pleura VHOG:0001496|EMAPA:16777|EHDAA2:0002205|FMA:9734|SCTID:361997008|UMLS:C0225776|NCIT:C33881|MA:0002489|OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA uberon owl:Class Each lung is invested by an exceedingly delicate serous membrane, the pleura, which is arranged in the form of a closed invaginated sac. A portion of the serous membrane covers the surface of the lung and dips into the fissures between its lobes; it is called the pulmonary pleura (or visceral pleura). The visceral pleura is attached directly to the lungs[Wikipedia:Visceral_pleura]. FMA treats this as part of the lungs UBERON:0002404 biolink:NamedThing transversus thoracis The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]. monarch-merged.owl UMLS:C1744608|EMAPA:19267|FMA:9760|SCTID:244933000|Wikipedia:Transversus_thoracis|MA:0002397|NCIT:C53180 Transversus:thoracis.png uberon owl:Class UBERON:0002425 biolink:NamedThing visceral serous pericardium Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]. monarch-merged.owl epicardium|visceral lamina of serous pericardium|serous visceral pericardium|visceral layer of serous pericardium|pericardium visceral mesothelium|lamina visceralis pericardii serosi|visceral pericardium Wikipedia:Visceral_pericardium|EMAPA:16589|VHOG:0000538|FMA:84882|MA:0000484|EMAPA:19032|SCTID:243955001 uberon owl:Class UBERON:0002463 biolink:NamedThing muscle of posterior compartment of hindlimb stylopod Any of the posterior thigh muscles. [WP,modified]. monarch-merged.owl set of hamstring muscles|muscle of posterior compartment of thigh|hamstring|posterior femoral muscles|muscularis compartimentum femoris posterius|posterior femoral muscle|posterior fascial compartment of thigh|hamstring muscle Wikipedia:Posterior_compartment_of_thigh|EHDAA:8295|UMLS:C0584895|FMA:81022|EHDAA2:0000727|MA:0002312|FMA:22427|NCIT:C53042|BTO:0003179|OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA|VHOG:0000844|Wikipedia:Hamstring|EMAPA:19145 http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png|http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG check FMA, singular. UBERON:0008538 uberon owl:Class UBERON:0002470 biolink:NamedThing autopod region Terminal segment of free limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot.|Terminal segment of free limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot monarch-merged.owl pod|autopod|autopodial segment|distal free limb segment|autopodium|manus/pes|autopodial element|paw/hand/foot/hoof|distal segment of free limb|autopodium region|distal segment of limb|autopodial limb segment|paw MA:0002714|NCIT:C77660|FMA:83015|EFO:0000877|BTO:0004359|MAT:0000091|SCTID:95936004|UMLS:C0687080|MIAA:0000091|EMAPA:32722 uberon owl:Class Naming conventions for pod terms under discussion within phenoscape group; note that this refers to the limb segment, not just the skeleton. UBERON:0002471 biolink:NamedThing zeugopod The middle free limb segment, between the autopod and stylopod segments. Includes as parts the zeugopodial skeleton. Examples: There are two types of zeugopod: forelimb zeugopod (aka forearm), hindlimb zeugopod (aka crus). monarch-merged.owl middle segment of free limb|middle part of limb|zeugopodium|epipodium|middle limb segment|middle free limb segment|zygopodium|zygopod|zeugopod limb segment|zeugopodial limb segment EFO:0000878|FMA:83016|MA:0002716|MIAA:0000092|MAT:0000092 There exists some controversy about which podial segments are present in some fishes, e.g. if the autopod is not newly evolved in tetrapods, there is a question as to which segments are actually present in basal vertebrate taxa.[PHENOSCAPE:curators] uberon owl:Class zeugopodial UBERON:0002472 biolink:NamedThing stylopod The proximal free limb segment. Includes as parts the stylopod skeleton. monarch-merged.owl propodium|stylopodial limb segment|proximal free limb segment|proximal part of limb|stylopodium|proximal segment of free limb MAT:0000093|MIAA:0000093|MA:0002717|FMA:83014|EFO:0000879 uberon owl:Class stylopodial Naming conventions for pod terms under discussion within phenoscape group UBERON:0002539 biolink:NamedThing pharyngeal arch One of a series of paired bulges that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. monarch-merged.owl visceral arch|branchial arch|arcus pharyngei|pharyngeal arches Wikipedia:Pharyngeal_arch|VHOG:0000155|EHDAA:571|NCIT:C34249|EMAPA:16117|FMA:293015|XAO:0000096|EFO:0000959|GAID:1292|UMLS:C0080322|MAT:0000242|AAO:0010359|BTO:0001785|TAO:0001306|MESH:A16.254.160|ZFA:0001306|SCTID:308766004|MIAA:0000242 http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png uberon owl:Class One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO] A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down.[well established][VHOG] Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering UBERON:0002962 biolink:NamedThing adductor pollicis muscle A muscle in the manus that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]. monarch-merged.owl adductor digiti primi|adductor pollicis|musculus adductor pollicis Wikipedia:Adductor_pollicis_muscle|SCTID:181649004|FMA:37380|EMAPA:36213 http://upload.wikimedia.org/wikipedia/commons/d/df/Musculusadductorpollicis.png uberon owl:Class UBERON:0002989 biolink:NamedThing anconeus muscle A small muscle on the posterior aspect of the elbow joint. monarch-merged.owl musculus anconeus|aconeus|anconeus|musculus anconaeus|m. anconeus Wikipedia:Anconeus_muscle|EMAPA:36181|SCTID:244993003|FMA:37704|AAO:0010714 Some consider anconeus to be a continuation of the triceps brachii muscle. Some sources consider it to be part of the posterior compartment of the arm, while others consider it part of the posterior compartment of the forearm. http://upload.wikimedia.org/wikipedia/commons/7/77/Gray1232.png uberon owl:Class UBERON:0003072 biolink:NamedThing optic cup Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]. monarch-merged.owl ocular cup|eye cup|ophtalmic cup|eyecup EHDAA2:0001303|UMLS:C0231109|ZFA:0001202|NCIT:C34233|BTO:0005351|VHOG:0000167|SCTID:308789007|EMAPA:16674|EHDAA:2912|TAO:0001202 uberon owl:Class (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup.[well established][VHOG] UBERON:0003073 biolink:NamedThing lens placode A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]. monarch-merged.owl placoda lentis|lens placodes UMLS:C1517770|NCIT:C34202|EMAPA:16672|EFO:0003494|FMA:296767|AAO:0011055|EHDAA2:0000982|VHOG:0000166|ZFA:0000122|TAO:0000122|Wikipedia:Lens_placode|XAO:0000240|EHDAA:2908 http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png uberon owl:Class Ectodermal primordium of the lens of the eye. Kimmel et al, 1995.[TAO] (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The optic cup induces the overlying surface ectoderm first to thicken as a lens placode and then to invaginate and form a lens vesicle that differentiates into the lens.[well established][VHOG] Classical transplantation experiments using amphibian embryos suggested that the optic vesicle is the source of lens-inducing signals sufficient to generate lens tissues in competent ectoderm (reviewed in Grainger et al., 1996). More recent findings suggest a multistep model for lens induction. There is now good evidence that lens specification occurs at the neurula stage, before the optic vesicle contact the surface ectoderm, and that neural crest cell migration in the frontonasal region is required to restrict the position of the lens placode (Bailey et al., 2006) UBERON:0003075 biolink:NamedThing neural plate A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]|A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]. monarch-merged.owl lamina neuralis|presumptive central nervous system DHBA:10153|RETIRED_EHDAA2:0001252|ZFA:0000132|UMLS:C0920623|XAO:0000249|TAO:0000132|FMA:293879|BTO:0001765|AAO:0011072|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1362|EHDAA:346|DMBA:15565|NCIT:C34225|EMAPA:35593|VHOG:0000068|EHDAA:902|Wikipedia:Neural_plate Neural:Crest.png uberon owl:Class The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995.[TAO] (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] UBERON:0003220 biolink:NamedThing metanephric mesenchyme one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]|One of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]. monarch-merged.owl metanephric blastema|metanephric mesoderm|metanephrogenic mesenchyme|metanephros associated mesenchyme EHDAA:4041|SCTID:361529008|EMAPA:17375|EHDAA2:0004062|Wikipedia:Metanephric_blastema|VHOG:0000540|EHDAA:5021|EHDAA:5915 Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"] uberon owl:Class A mass of intermediate mesodermal cells around the distal end of the ureteric bud that gives rise to nephrons in the metanephric kidney. [TFD][VHOG] When the ureteric buds emerge from the nephric duct, they enter the metanephrogenic mesenchyme. The ureteric buds induce this mesenchymal tissue to condense around them and differentiate into the nephrons of the mammalian kidney. As this mesenchyme differentiates, it tells the ureteric bud to branch and grow.[well established][VHOG] UBERON:0003222 biolink:NamedThing flexor digitorum superficialis An extrinsic flexor muscle of the fingers at the proximal interphalangeal joints.[WP]. monarch-merged.owl musculus flexor digitorum superficialis|flexor digitorum superficialis muscle Wikipedia:Flexor_digitorum_superficialis_muscle|EMAPA:36202|FMA:38469 http://upload.wikimedia.org/wikipedia/commons/5/53/Gray421.png uberon owl:Class UBERON:0003228 biolink:NamedThing supinator muscle A muscle which originates on the distal humerus, inserts on the radius and accomplishes supination (rotation of the wrist). monarch-merged.owl supinator brevus|supinator|musculus supinator FMA:75002|EMAPA:36208|Wikipedia:Supinator_muscle|FMA:38512|SCTID:181634007 http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray420.png TODO - The term 'supinator' can also refer more generally to a muscle that causes supination of a part of the body. In older texts, the term 'supinator longus' was used to refer to the brachioradialis, and 'supinator brevis' was used to the muscle now known as the supinator. uberon owl:Class UBERON:0003267 biolink:NamedThing tooth of upper jaw A calcareous tooth that is part of the upper jaw region. In mammals, the upper jaw teeth are attached to the maxilla. monarch-merged.owl maxillary tooth|upper jaw tooth UMLS:C1710581|MA:0001909|EHDAA:8045|EMAPA:17938|NCIT:C49792|SCTID:422279005 Note that we follow EHDAA2 and consider teeth part of the jaw skeleton uberon owl:Class UBERON:0003268 biolink:NamedThing tooth of lower jaw A calcareous tooth that is part of the lower jaw region. In mammals, the lower jaw teeth are attached to the mandible (dentary). monarch-merged.owl lower jaw tooth|lower jaw calcareous tooth|mandibular tooth|lower jaw vertebrate tooth|lower jaw dentine containing tooth|calcareous tooth of lower jaw EHDAA:8009|NCIT:C49582|EHDAA2:0001029|FMA:321647|EMAPA:17917|SCTID:422032003|MA:0001907|UMLS:C1708757 uberon owl:Class UBERON:0003277 biolink:NamedThing skeleton of upper jaw A subdivision of the skeleton that corresponds to the upper part of the mouth. The lower jaw skeleton includes the following elements, when present: upper jaw teeth, the maxilla and other lower jaw bones. monarch-merged.owl upper jaw skeleton|upper jaw MA:0001908|EHDAA2:0002128|EMAPA:17927|EHDAA:8041|VHOG:0000429|FMA:54397|XAO:0003087|AAO:0000622 uberon owl:Class The jaw joint of all jawed vertebrates, except for mammals, involves the quadrate and articular bones, or the posterior ends of the palatoquadrate and mandibular cartilages; A correlate of the conversion of the articular and quadrate bones to the malleus and incus is that all adult mammals have a jaw joint that lies between the dentary of the lower jaw and the squamosal bone of the skull roof.[well established][VHOG] EMAPA/MA placement unclear. See https://github.com/obophenotype/mouse-anatomy-ontology/issues/102 UBERON:0003278 biolink:NamedThing skeleton of lower jaw A subdivision of the skeleton that corresponds to the lower part of the mouth. The lower jaw skeleton includes the following elements, when present: lower jaw teeth, the mandible and other lower jaw bones, and Meckel's cartilage. monarch-merged.owl lower jaw|mandibles|mandible|lower jaw skeleton|mandibular series EMAPA:17906|VHOG:0000428|AAO:0000274|ZFA:0001273|TAO:0001273|EHDAA:8005|EHDAA2:0004606|EMAPA:17910|XAO:0003084|FMA:54398|MA:0001906 uberon owl:Class The ventral portion of the first pharyngeal arch, comprising the lower jaw.[TAO] The jaw joint of all jawed vertebrates, except for mammals, involves the quadrate and articular bones, or the posterior ends of the palatoquadrate and mandibular cartilages; A correlate of the conversion of the articular and quadrate bones to the malleus and incus is that all adult mammals have a jaw joint that lies between the dentary of the lower jaw and the squamosal bone of the skull roof.[well established][VHOG] Inclusion of the FMA class 'lower jaw' is debatable - this mostly corresponds to the lower jaw skeleton (with 'maxillary part of mouth' corresponding to the upper jaw region); however, the FMA class also includes gingiva. See also: https://github.com/obophenotype/mouse-anatomy-ontology/issues/102 UBERON:0003660 biolink:NamedThing eyelid muscle A muscle that attaches to an eyelid. monarch-merged.owl eyelid muscle organ|muscle organ of blepharon|blepharon muscle organ|muscle organ of eyelid MA:0000269|NCIT:C52803|UMLS:C1707990 uberon owl:Class The muscle in the orbit of the eye that lifts the upper eyelid[ncithesaurus:Eyelid_Muscle]. UBERON:0003671 biolink:NamedThing anterior cruciate ligament of knee joint A major stabilizing ligament in the knee that attaches the surfaces of the femur and tibia. monarch-merged.owl anterior cruciate ligament GAID:122|OpenCyc:Mx4r77KC8RuaEd2f4ADggVfexA|FMA:44614|galen:AnteriorCruciateLigament|UMLS:C0078960|NCIT:C32088|SCTID:182443006|MESH:D016118 uberon owl:Class UBERON:0003677 biolink:NamedThing tooth root The part of a tooth that is implanted in the gum; the root is normally located below the neck of the tooth, covered by cementum rather than enamel, and attached by the periodontal ligament to the alveolar bone. monarch-merged.owl tooth root|radix corona|root of tooth FMA:55624|EMAPA:37975|SCTID:245728004|GAID:1280|MESH:A14.254.900.750 uberon owl:Class UBERON:0003685 biolink:NamedThing cranial suture Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture. monarch-merged.owl suture|cranium suture|suture joint of skull|sutura|suture of cranium MA:0001475|Wikipedia:Suture_(joint)|EMAPA:35263|MESH:D003393|FMA:7493|GAID:211|SCTID:244509003 uberon owl:Class UBERON:0003848 biolink:NamedThing gonadal vein In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]. monarch-merged.owl gonada vein|vein of gonad|vein of gonada|gonad vein SCTID:278192008|EHDAA2:0000719|OpenCyc:Mx4rvlWYh5wpEbGdrcN5Y29ycA|VHOG:0001340|Wikipedia:Gonadal_vein|EHDAA:8703 http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png uberon owl:Class UBERON:0003897 biolink:NamedThing axial muscle One of the skeletal muscles of the head and neck, spine, and ribs. monarch-merged.owl EMAPA:18167|RETIRED_EHDAA2:0000160|EHDAA:5982|TAO:0001954|MA:0003153 uberon owl:Class UBERON:0003902 biolink:NamedThing retinal neural layer The part of the retina that contains neurons and photoreceptor cells[GO]. monarch-merged.owl neuroretina|neural retina|stratum nervosum (retina)|neural layer of retina|stratum nervosum retinae|neural retinal epithelium MA:0000277|FMA:58628|EHDAA2:0001253|EMAPA:18590|EHDAA:4763|NCIT:C33166|TAO:0000046|EMAPA:17171|AAO:0011095|UMLS:C1518263|ZFA:0000046|XAO:0003216|BTO:0000929|CALOHA:TS-0685|VHOG:0000535 uberon owl:Class (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] UBERON:0004064 biolink:NamedThing neural tube basal plate The region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. monarch-merged.owl motor part of neural tube|spinal cord basal plate|basal plate of neural tube|basal plate|ventral part of neural tube http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1372|AAO:0010561|NCIT:C34111|UMLS:C1511061|Wikipedia:Basal_plate_(neural_tube)|EFO:0001904 uberon owl:Class UBERON:0004128 biolink:NamedThing optic vesicle The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]. monarch-merged.owl ocular vesicle|eye vesicle|optic vesicles|evagination Wikipedia:Optic_vesicles|TAO:0000050|UMLS:C0231106|FMA:293357|EMAPA:16540|SCTID:362864008|XAO:0000228|NCIT:C34236|AAO:0011039|EHDAA2:0001320|ZFA:0000050|VHOG:0000165 Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode [PMID:16496288] http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray863.png uberon owl:Class (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles.[well established][VHOG] UBERON:0004164 biolink:NamedThing branchiomeric muscle A jaw muscle that arises from cranial mesenchyme and is innervated by cranial nerves. monarch-merged.owl branchial head muscle|branchiomeric skeletal muscle Wikipedia:Branchiomeric_musculature|XAO:0004325 uberon owl:Class The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. Branchiomeric muscles of mammals correspond to the musculature of fish[GO][GO:0014707]. It has been hypothesized that Haikouella must have been powered by branchiomeric muscles, as in living craniates, rather than by water moving through the pharynx via ciliary currents, as in lancelets[http://icb.oxfordjournals.org/content/42/4/743.full] UBERON:0004187 biolink:NamedThing Harderian gland The Harderian gland is an anterior orbital gland usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]. monarch-merged.owl gland of Hardarian|deep gland of the nictitating membrane|Harder's gland|glandula palpebra tertia profundus|Hardarian gland Wikipedia:Harderian_gland|BTO:0000557|SCTID:41474005|EMAPA:19153|NCIT:C77619|UMLS:C0018597|MA:0001247|GAID:1219|MESH:D006243 uberon owl:Class In mouse the HG appears in the posterior part of eye region, in the form of nonluminated tubules between the sixteenth and eighteenth days of gestation. At birth it is still not differentiated histologically. In birds the HG originates from the conjunctival epithelium at a late embryonic stage. In the English sparrow, Passer domesticus (incubation period of about 13 days), it appears between the seventh and the eighth days of incubation. In the chick embryo (incubation period of about 21 days) it originates between the eleventh and the twelfth days.[PMID:9156609]|In the limbless, burrowing amphibian Apoda (Caecilians) the harderian gland is very large, filling much of the orbit and lubricating a retractile sensory tentacle rather than the eye (Walls, 1942; Wolff, 1948). In some animals it acts as an accessory to the lacrimal gland, secreting fluid that eases movement of the nictitating membrane[WP]|In mammals, the gland excretes an oily substance used to preen the fur[WP]|The functions attributed to the gland are many and diverse. Amongst these, it has been held to be a site of immune responses, a source of thermoregulatory lipids, a source of pheromones, a photoprotective organ and part of a retinal-pineal axis. It is arguably the last remaining large organ of widespread dis- tribution among the vertebrates to which we cannot confidently ascribe a confirmed function. The harderian gland may be compound tubular (MacLeod, 1880; Paule, 1957) or compound tubuloacinar/tubuloalveolar (Aureli, 1957; Hoffman, 1971). UBERON:0004209 biolink:NamedThing renal vesicle The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. monarch-merged.owl stage I nephron note that this class includes both metanephric and mesonephric vesicles - ZFA and EHDAA2 associations are placed with these classes. TODO - make a more specific develops_from relationship - see UBERON:0005107 ! metanephric cap uberon owl:Class UBERON:0004346 biolink:NamedThing gubernaculum (male or female) Embryonic structures which begin as undifferentiated mesenchyme attaching to the caudal end of the gonads. The gubernaculum is present only during the development of the urinary and reproductive organs, being replaced by distinct vestiges in males and females[WP]. Enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP].|embryonic structures which begin as undifferentiated mesenchyme attaching to the caudal end of the gonads. The gubernaculum is present only during the development of the urinary and reproductive organs, being replaced by distinct vestiges in males and females[WP]. Enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP] monarch-merged.owl caudal suspensory ligament|gubernaculae|gubernaculum|Gabernaculum Wikipedia:Gubernaculum|NCIT:C82952|UMLS:C0228051 http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png UBERON:0000452 uberon owl:Class gubernacular WP def is male/female, split term? EMAP is male-specific. vestigial adult in FMA. TODO UBERON:0004347 biolink:NamedThing limb bud An outgrowth on the lateral trunk of the embryo that develops into a limb. The limb bud is divided into ectoderm and mesenchyme[cjm, modified from MP]. monarch-merged.owl limbbud|gemmae membrorum|limb buds FMA:296780|EMAPA:35944|AAO:0010375|GAID:1307|XAO:0003161|NCIT:C34203|BTO:0001640|UMLS:C0282505|Wikipedia:Limb_bud|MESH:A16.254.462 developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm uberon owl:Class Early outgrowth of presumptive limb.[AAO] UBERON:0004356 biolink:NamedThing apical ectodermal ridge Multilayered ectodermal region at the distal tip of a limb or fin bud necessary for the proper development of the underlying mesenchyme[MP,modified]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP].|multilayered ectodermal region at the distal tip of a limb or fin bud necessary for the proper development of the underlying mesenchyme[MP,modified]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]. monarch-merged.owl crista ectodermalis apicalis|apical epidermal ridge|AER NCIT:C34109|EMAPA:32744|UMLS:C1516037|TAO:0002146|Wikipedia:Apical_ectodermal_ridge|ZFA:0001702|AAO:0010760|XAO:0004121 note that media, dorsal fins etc have AERs. http://upload.wikimedia.org/wikipedia/commons/5/56/Limbbuddiagram.jpg uberon owl:Class Proliferative region that is part of the developing fin fold or fin.[TAO]|Distal ectodermal thickening which forms along the anterior-posterior limb axis. Signaling from this region influences proximal-distal patterning of the limb. Structure is missing in some lineages (salamanders, Eleutherodactylus coqui) however morphologically their indistinct distal ectoderm may still be involved in signaling.[AAO] relationship loss: subclass proliferative region (TAO:0000098)[TAO] The AER of tetrapods regresses after specification of skeletal progenitors, the AER of teleosts form an elongating fin fold maintaining mesenchyme in plastic proliferating state; maintaining expression of A-P axis genes; interacting with D-V proteins. Genes: AER induced by Fgf10 in mesenchyme. AER secretes Fgf8, which stimulates mitosis in the mesenchyme causing Fgf10 production - positive feedback loop UBERON:0004370 biolink:NamedThing anterior limiting lamina of cornea A transparent homogeneous acellular layer, 6 to 9 um thick, lying between the basal lamina of the outer layer of stratified epithelium and the substantia propria of the cornea; it is considered to be a basement membrane. monarch-merged.owl Bowman's anterior elastic lamina|anterior limiting lamina|Bowman's membrane|anterior limiting membrane|anterior limiting lamina of cornea|Reichert's membrane|lamina limitans anterior (cornea)|anterior elastic lamina|lamina limitans anterior corneae|Bowman's layer ZFA:0001684|SCTID:281075003|UMLS:C0229127|TAO:0002155|MA:0001240|Wikipedia:Bowman%27s_membrane|FMA:58273|NCIT:C32226 uberon owl:Class Acellular anatomical structure that is the zone of collagen fibers adjacent the basement membrane of the corneal epithelium.[TAO] Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals UBERON:0004461 biolink:NamedThing skeletal musculature of head Any collection of skeletal muscles that is part of a head [Automatically generated definition]. monarch-merged.owl muscle group of head|muscles of head|set of muscles of head|musculi capitis|head musculature FMA:71287|EMAPA:18171 This class is restricted to skeletal muscles that attach to the cranial skeleton. This seems to be consistent with FMA and EMAPA usage. Note that by definition this excludes invertebrate head musculature. It corresponds to the individual muscle organ term UBERON:0002376 uberon https://github.com/obophenotype/mouse-anatomy-ontology/issues/4|https://github.com/obophenotype/uberon/issues/1405 owl:Class UBERON:0004468 biolink:NamedThing set of muscles of vertebral column monarch-merged.owl muscle group of vertebral column FMA:33061 uberon owl:Class UBERON:0004475 biolink:NamedThing musculature of hip The collection of muscles that form attachments to the hip skeleton. monarch-merged.owl set of muscles of hip|muscle group of hip|hip musculature FMA:50227 uberon owl:Class UBERON:0004476 biolink:NamedThing musculature of shoulder The collection of muscles that form attachments to the shoulder skeleton. monarch-merged.owl muscle group of shoulder|set of muscles of shoulder FMA:50220 uberon owl:Class UBERON:0004518 biolink:NamedThing muscle of vertebral column A muscle that is attached to a vertebra of the vertebral column. monarch-merged.owl vertebral column muscle FMA:22594 uberon owl:Class UBERON:0004686 biolink:NamedThing gastro-splenic ligament Peritoneum connecting the greater curvature of stomach with the hilum of the spleen[umich]. part of the greater omentum; derived from the dorsal mesogastrium in the embryo. monarch-merged.owl gastrosplenic ligament|gastrolienal ligament|ligamentum gastrosplenicum|gastrosplenc ligament FMA:16517|VHOG:0000354|SCTID:260636005|EMAPA:18285|MA:0001619|EHDAA:9160|NCIT:C32671|EHDAA2:0000702|Wikipedia:Gastrosplenic_ligament http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1039.png uberon owl:Class Mesenteric fold extending from the greater curvature of the stomach to the spleen. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] in MA, EMAPA and EHDAA2 this is part of the dorsal mesogastrium. In wikipedia, and the above source, it is derived from the DM. This is a generic ligament in MA, we infer this and assert that this is a nonskeletal ligament UBERON:0004687 biolink:NamedThing lieno-renal ligament Peritoneum that attaches the spleen to the posterior abdominal wall over the left kidney. develops from the dorsal mesogastrium of the embryo[umich]. monarch-merged.owl ligamentum splenorenale|splenicorenal ligament|phrenicolienal ligament|splenorenal ligament|lienorenal ligament|ligamentum lienorenale|ligamentum splenorenale (lienorenale, phrenicosplenicum)|phrenico-splenic ligament FMA:16522|EMAPA:18286|EHDAA2:0004572|MA:0001620|Wikipedia:Splenorenal_ligament Multiple sources support greater omentum assignment. E.g. http://medical-dictionary.thefreedictionary.com/splenorenal+ligament. We change the MA part_of assignment to develops_from uberon owl:Class UBERON:0004708 biolink:NamedThing paired limb/fin An appendage that is part of an appendage girdle complex. monarch-merged.owl limb or fin|girdle-associated appendage|paired appendage|limb/fin|pectoral or pelvic appendage|jointed paired lateral appendage|pelvic/pectoral appendage VSAO:0000067 this class is the union of the classes limb, pectoral fin and pelvic fin. UBERON:0009872 uberon owl:Class UBERON:0004918 biolink:NamedThing internal urethral sphincter A urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]. monarch-merged.owl musculus sphincter supracollicularis|internal sphincter muscle of urethra|internal urethral sphincter muscle|supracollicular sphincter|musculus sphincter urethrae internus|internal sphincter of urethra|sphincter urethrae internus|preprostatic sphincter FMA:45769|SCTID:277856008|Wikipedia:Internal_sphincter_muscle_of_urethra http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray407.png uberon owl:Class UBERON:0004919 biolink:NamedThing external urethral sphincter . monarch-merged.owl external urethral sphincter muscle|urethralis muscle|external sphincter muscle of urethra|m. urethralis|annulus urethralis|musculus sphincter urethrae membranaceae|external sphincter of urethra|urethralis FMA:85274|UMLS:C1710586|MA:0002401|NCIT:C52561|EMAPA:37790|SCTID:19101001 http://upload.wikimedia.org/wikipedia/commons/7/70/Gray1166.png|http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png uberon owl:Class UBERON:0005442 biolink:NamedThing abdominal external oblique muscle The lateral abdominal wall muscle that is the most superficial, immediately superficial to the internal oblique. monarch-merged.owl external oblique muscle|external oblique abdominis|external oblique|m. obliquus externus abdominis|obliquus externus abdominis|obliquus externus|obliquus externus abdominis muscle|external abdominal oblique muscle|abdominal external oblique muscle|external abdominal oblique|external oblique abdominis muscle|oblique strength|obliquus abdominis externus|external oblique abdominal muscles EMAPA:18162|NCIT:C32567|SCTID:244946005|EHDAA2:0000469|MA:0002345|Wikipedia:Abdominal_external_oblique_muscle|VHOG:0000788|FMA:13335|EHDAA:8248|UMLS:C0224375 http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg uberon owl:Class Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] UBERON:0005448 biolink:NamedThing greater omentum The greater omentum (also the great omentum, omentum majus, gastrocolic omentum, epiploön, or, especially in animals, caul) is a large fold of peritoneum that hangs down from the stomach, and extends from the stomach to the posterior abdominal wall after associating with the transverse colon. monarch-merged.owl epiploic|epiplooen|great omentum|gastrocolic omentum|epiploon|omentectomy|omentum majus|epiploön|caul EMAPA:18660|MA:0003128|Wikipedia:Greater_omentum|EHDAA:6071|SCTID:362711003|UMLS:C0230259|FMA:9580|NCIT:C32697|EHDAA2:0000720|VHOG:0000356|CALOHA:TS-2073|EV:0100085 http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png uberon owl:Class A filmy, transparent double fold of the peritoneum, draping the transverse colon and coils of the small intestine. It is attached along the greater curvature of the stomach and the first part of the duodenum. [TFD][VHOG] UBERON:0005473 biolink:NamedThing sacral region A subdivision of an organism along the anterior-posterior axis in the pelvic region immediately posterior to the lumbar region and anterior to the caudal region. Sometimes an intermediate region is defined between the sacral and caudal. monarch-merged.owl posterior part of pelvis|croup|pelvic back|back of pelvis|regio sacralis|rump|sacral part of pelvis|hindquarter Wikipedia:Sacrum|SCTID:182344001|FMA:24228 uberon owl:Class pygal|sacral Amphibians - 1 sacral vertebra; Living reptiles & most birds - 2 sacral vertebrae; Most mammals - 3 to 5 sacral vertebrae. TODO - split sacral from sacrococcygeal UBERON:0005484 biolink:NamedThing tricuspid valve leaflet A valve leaflet that is part of a tricuspid valve. monarch-merged.owl tricuspid valvular leaflet|leaflet of tricuspid valve|tricuspid valve leaflets|tricuspid valve leaflet RETIRED_EHDAA2:0002082|FMA:7237|MA:0003180|SCTID:276830008|VHOG:0000821|EMAPA:18630 uberon owl:Class Leaf of caridac valve which has as its parts the anterior, posterior and septal leaflets that is is attached to the chorda tendinea of the right ventricle and the fibrous ring of tricuspid valve. The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[uncertain][VHOG] UBERON:0005493 biolink:NamedThing hyoid muscle One of a group of muscles used in mastication and swallowing. These muscles are attached to the hyoid bone, which is suspended in the neck and forms the base of the tongue and larynx. The muscles are divided into suprahyoid (superior) or infrahyoid (inferior) groups relative to the bone[WP, generalized]. monarch-merged.owl hyoid muscles NCIT:C32753|VHOG:0001494|SCTID:244823009|ZFA:0000521|UMLS:C0448345|EFO:0003536|EHDAA2:0000794|TAO:0000521 uberon owl:Class Although the zebrafish occupies a rather derived phylogenetic position within actinopterygians and even within teleosts, with respect to the mandibular, hyoid and hypobranchial muscles it seems justified to consider it an appropriate representative of these two groups. Among these muscles, the three with clear homologues in tetrapods and the further three identified in sarcopterygian fish are particularly appropriate for comparisons of results between the actinopterygian zebrafish and the sarcopterygians.[well established][VHOG] attachment sites may vary by species; for example, in orangutans, the posterior digastric does not attach to the hyoid, but we may still consider this a (supra)hyoid muscle. UBERON:0005621 biolink:NamedThing rhomboid A rhombus-shaped muscle associated with the scapula and chiefly responsible for its retraction. There are two rhomboid muscles. monarch-merged.owl rhomboideus muscle|rhomboid muscle|musculus rhomboideus|rhomboideus|muscle of rhomboideus complex SCTID:277441005|EHDAA:8315|EMAPA:37733|Wikipedia:Rhomboid_muscles|EHDAA2:0001635|MA:0002367|VHOG:0001391 http://upload.wikimedia.org/wikipedia/commons/a/aa/Rhomboidei.PNG TODO - add child terms uberon owl:Class UBERON:0005880 biolink:NamedThing prepollex A rudimentary additional digit-like structure on the preaxial side of the thumb of certain amphibians and mammals[dictionary.com]. monarch-merged.owl pseudothumb not homologous to digit 1 of tetrapods. Note we treat the prepollex as distinct from the digits, which are not part of the carpus uberon owl:Class Two or more elements located ventral and medial to the metacarpal of digit II(I). The proximal prepollex is small and round whereas distal prepollex 1 is usually large and wedge-shaped. When more elements are present, they are smaller than previous elements.[AAO] UBERON:0005994 biolink:NamedThing chorda tendineae The tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria|The tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria. monarch-merged.owl chordae tendinea|chordae tendineae cordis MESH:D002815|GAID:564|EMAPA:36322|Wikipedia:Chordae_tendineae|NCIT:C32307|FMA:12225|UMLS:C0008484|SCTID:279330004 http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png uberon owl:Class UBERON:0005995 biolink:NamedThing mitral valve anulus The fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps.|The fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps monarch-merged.owl anulus of mitral valve|mitral annulus|mitral valvar anulus|mitral anulus|fibrous ring of mitral valve FMA:9498|EMAPA:37419|Wikipedia:Mitral_annulus uberon owl:Class UBERON:0006071 biolink:NamedThing caudal region Subdivision of an organism along anterior-posterior axis that is the posteriormost region, extending past the anus (or cloaca, if present), consisting of a tail in some fully formed chordates (or a tail bud in embryos). In animals that have a sacral region, this is the region immediately posterior to this. monarch-merged.owl tail region|post-anal caudal region|post-anal tail region|postsacral region XAO:0000087 uberon owl:Class This region is reduced in humans and corresponds to the coccyx We follow XAO is distinguishing the tail region from the tail; the tail bud is part of the tail region; the tail starts after the tail bud UBERON:0006320 biolink:NamedThing inferior oblique extraocular muscle Thin, narrow muscle placed near the anterior margin of the floor of the orbit. monarch-merged.owl obliquus inferior|m. obliquus inferior|inferior oblique muscle|musculus obliquus inferior bulbi|ventral oblique extraocular muscles|ventral oblique extraocular muscle|obliquus oculi inferior|musculus obliquus inferior|inferior oblique VHOG:0001132|MA:0001276|AAO:0010117|Wikipedia:Inferior_oblique_muscle|FMA:49040|UMLS:C0582817|ZFA:0000861|NCIT:C32783|SCTID:181156006|TAO:0000861 Taxon notes (via VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png uberon owl:Class The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] UBERON:0006321 biolink:NamedThing superior oblique extraocular muscle The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve). monarch-merged.owl dorsal oblique extraocular muscles|obliquus superior|superior oblique|musculus obliquus superior bulbi|M. obliquus superior|musculus obliquus superior|dorsal oblique extraocular muscle|superior oblique muscle|obliquus oculi superior ZFA:0000738|TAO:0000738|SCTID:181155005|Wikipedia:Superior_oblique_muscle|AAO:0010119|MA:0001277|VHOG:0001131|UMLS:C0582816|NCIT:C33688|FMA:49039 http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png uberon owl:Class Cranial nerve IV innervated; dorsal in the obliquus group.[AAO] The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] UBERON:0006329 biolink:NamedThing superior pharyngeal constrictor The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]. monarch-merged.owl superior constrictor muscle|musculus constrictor pharyngis superior|superior constrictor of pharynx|superior constrictor|constrictor muscle of pharynx superior|superior constrictor pharyngeus Wikipedia:Superior_pharyngeal_constrictor_muscle|SCTID:244800006|FMA:46621|EMAPA:18966|NCIT:C33672|UMLS:C1515063|MA:0002280 http://upload.wikimedia.org/wikipedia/commons/a/ac/Musculusconstrictorpharyngissuperior.png uberon owl:Class The superior constrictor is a muscle that is an integral part of the pharyngeal tube that is attached to the mandible, pterygomandibular raphe, basioccipital bone, pterygoid process and midline raphe and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] UBERON:0006508 biolink:NamedThing interosseous muscle of autopod Any of the muscles of the autopod region that lie between metacarpal or metatarsal bones. monarch-merged.owl interosseous|interosseus muscle|m. interosseous|interossei Wikipedia:Interossei uberon owl:Class UBERON:0006533 biolink:NamedThing rectus extraocular muscle monarch-merged.owl FMA:312408|MA:0001278 uberon owl:Class UBERON:0006649 biolink:NamedThing suspensory ligament of ovary A fold of peritoneum that extends out from the ovary to the wall of the pelvis. monarch-merged.owl infundibulopelvic ligament|infundibulopelvic fold MA:0003244|FMA:19822|SCTID:279917007|Wikipedia:Cooper%27s_ligaments_of_penis_of_ovary|EMAPA:19085 Some sources consider it a part of the broad ligament of uterus[2] while other sources just consider it a "termination" of the ligament.[3] uberon owl:Class UBERON:0006651 biolink:NamedThing appendix testis The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time. monarch-merged.owl testis appendix|appendix vesiculosus|hydatid of Morgagni|hydatid of morgagni|appendix testis|appendix of testis|hydatid of Morgani|appendix of the testis|appendices testis UMLS:C1512521|NCIT:C32747|FMA:19846|EMAPA:19087|SCTID:279601003|MA:0003246|Wikipedia:Appendix_of_testis|EMAPA:29304 See also 'vesicular appendage of epoophoron'. TODO: check vesicular appendages http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png the label hydatid of morgagni is ambiguous w.r.t male vs female. The ncita structure 'hydatic of morgani' is male and thus belongs here. uberon owl:Class a cystlike remnant of the müllerian duct on the upper end of the testis; corresponding female structure: one of the small pedunculated structures attached to the uterine tubes near their fimbriated end; remnants of the mesonephric ducts[http://medical-dictionary.thefreedictionary.com/]. UBERON:0006670 biolink:NamedThing central tendon of diaphragm The three-lobed cloverleaf-shaped aponeurosis situated at the center of the diaphragm; the central tendon is fused with the fibrous pericardium that provides attachment for the muscle fibers.|the three-lobed cloverleaf-shaped aponeurosis situated at the center of the diaphragm; the central tendon is fused with the fibrous pericardium that provides attachment for the muscle fibers monarch-merged.owl centrum tendineum|centrum tendineum diaphragmatis|central tendon VHOG:0001399|UMLS:C0230162|EMAPA:17702|Wikipedia:Central_tendon_of_diaphragm|NCIT:C34119|SCTID:244943002|FMA:58279 uberon owl:Class In mammals, the diaphragm muscle divides the thoracoabdominal cavity into thorax and abdomen. In most mammals, the diaphragm is a flat sheet with muscle fibers radiating outward from a central tendon, and the diaphragm's apposition to the cranial surface of the liver gives it a dome-shape. Muscle fiber contraction reduces the curvature of the dome, thereby expanding the thoracic cavity and aspirating air into the lungs.[well established][VHOG] UBERON:0006716 biolink:NamedThing mesopodium region The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus)|The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus). monarch-merged.owl mesopod|carpus/tarsus|mesopodial limb segment|mesopodial segment Wikipedia:Carpus_and_tarsus_of_land_vertebrates uberon owl:Class Naming conventions for pod terms under discussion within phenoscape group UBERON:0006717 biolink:NamedThing autopodial skeleton The collection of all skeletal elements in an autopodium region. monarch-merged.owl autopod skeleton|autopodium|skeleton of autopod|skeletal parts of autopod|autopodial skeleton VSAO:0005019 uberon owl:Class Distal section of the limb skeleton, consisting of the anterior autopodium or posterior autopodium.[VSAO] Naming conventions for pod terms under discussion within phenoscape group UBERON:0006725 biolink:NamedThing spiral ligament A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis. monarch-merged.owl spiral ligament of cochlear duct|spiral ligament of cochlea|spiral cochlear ligament|ligamentum spirale ductus cochlearis SCTID:279840005|FMA:77834|UMLS:C0229477|Wikipedia:Spiral_ligament|MESH:D055493|EMAPA:35798|BIRNLEX:2524|MA:0001192 UBERON:0028186 uberon owl:Class this is not classified as a ligament in FMA UBERON:0006813 biolink:NamedThing nasal skeleton Structural framework that provides support to the nasal sacs and ducts. monarch-merged.owl skeleton of nose SCTID:281486007|AAO:0000320|FMA:60116 uberon owl:Class UBERON:0007005 biolink:NamedThing cardiogenic splanchnic mesoderm The splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]. monarch-merged.owl cardiogenic region|heart primordia|cardiogenic mesoderm|cardiogenic splanchnopleure|cardiac mesoderm AAO:0011021|BILA:0000051|EHDAA2:0000214|EHDAA:385|EFO:0000315|XAO:0000235|VHOG:0001641|SCTID:360387000|FMA:293143 review EHDAA2 placement|consider FBbt:00005541 ! cardiogenic mesoderm uberon owl:Class UBERON:0007121 biolink:NamedThing skin nerve field A zone of skin that is mainly innervated by a single sensory nerve. A nerve field innervated by exactly one dorsal root is called a dermatome. monarch-merged.owl dermatomic area|peripheral nerve field|dermatome|dermatome segment of skin FMA:80301|Wikipedia:Peripheral_nerve_field|Wikipedia:Dermatome_(anatomy)|SCTID:244023005 Examples: V1, V2 and V3 distributions of the trigeminal nerve; the zone of skin innervated by S2 http://upload.wikimedia.org/wikipedia/commons/9/97/Dermatomes_and_cutaneous_nerves_-_posterior.png uberon owl:Class UBERON:0007151 biolink:NamedThing mitral valve leaflet A valve leafleft that is part of a mitral valve. monarch-merged.owl mitral valve leaflets|mitral valve leaflet|mitral valvular leaflet|leaflet of mitral valve SCTID:244353007|EMAPA:18628|VHOG:0000822|FMA:7241 uberon owl:Class Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve. The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[uncertain][VHOG] UBERON:0007823 biolink:NamedThing appendage girdle region An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). monarch-merged.owl fin girdle region|girdle region|limb girdle region|fin girdle|girdle|limb girdle VSAO:0000303|EMAPA:37854|FMA:24874 this encompasses non-skeletal tissue UBERON:0007824 uberon owl:Class An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). There are only two instances of appendage girdle regions per organism.[VSAO] UBERON:0008188 biolink:NamedThing tendon of biceps brachii A tendon that attaches_to a biceps brachii. monarch-merged.owl tendon of biceps brachii muscle|biceps brachii tendon FMA:38152|EMAPA:25053|SCTID:361886007 uberon owl:Class UBERON:0008192 biolink:NamedThing tendon of triceps brachii A tendon that attaches_to a triceps brachii. monarch-merged.owl tendon of triceps brachii muscle|triceps brachii tendon|triceps tendon SCTID:245105007|FMA:38380 uberon owl:Class UBERON:0008284 biolink:NamedThing columnella muscle The muscle of the central column or axis of a spiral univalve shell. monarch-merged.owl columella muscle Wikipedia:Columella_(gastropod)#Columellar_muscles|BTO:0000277 uberon owl:Class UBERON:0008446 biolink:NamedThing flexor pollicis longus muscle A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. monarch-merged.owl flexor pollicis longus|musculus flexor pollicis longus|flexor pollicis muscle|flexor pollicis SCTID:361818001|Wikipedia:Flexor_pollicis_longus_muscle|FMA:38481 http://upload.wikimedia.org/wikipedia/commons/7/72/FPL.png uberon owl:Class Modern humans are unique among hominids in having a flexor pollicis longus (FPL) muscle belly that is separate from that of the flexor digitorum profundus (FDP). While the FPL is not a separate muscle belly in extant great apes, a distinct tendon from the FDP belly might be present. In some individuals this tendon tend to act more like a ligament which restricts extension of the interphalangeal joint of the thumb. In orangutans there is a tendon similar in insertion and function to the FPL in humans, but which has an intrinsic origin on the oblique head of the adductor pollicis UBERON:0008464 biolink:NamedThing abductor hallucis muscle The Abductor hallucis lies along the medial border of the pes and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe. monarch-merged.owl musculus abductor hallucis|abductor hallucis Wikipedia:Abductor_hallucis_muscle|SCTID:181723001|FMA:37448 Abductor:hallucis.png uberon owl:Class UBERON:0008465 biolink:NamedThing abductor pollicis brevis muscle The abductor pollicis brevis is a muscle in the manus that functions as an abductor of the thumb. monarch-merged.owl abductor brevis|musculus abductor pollicis brevis|abductor pollicis brevis Wikipedia:Abductor_pollicis_brevis_muscle|SCTID:181648007|FMA:37373 http://upload.wikimedia.org/wikipedia/commons/7/77/Musculusabductorpollicisbrevis.png uberon owl:Class UBERON:0008488 biolink:NamedThing cremaster muscle A thin layer of skeletal muscle that envelops the spermatic cord and testis of most male mammals in a series of loops; it is a continuation of the obliquus internus, arising from the inguinal ligament and inserting into the crest of the pubis and into the sheath of the rectus abdominis; it is innervated by the genital branch of the genitofemoral nerve and functions to draw the testis up toward the superficial inguinal ring in response to cold or to stimulation of the nerve;. monarch-merged.owl cremaster|muscle of Riolan|cremaster muscle|musculus cremaster |muscle of Riolan (cremaster)|cremasteric muscle|musculus cremaster Wikipedia:Cremaster_muscle|NCIT:C32396|UMLS:C0224377|FMA:21531|SCTID:244948006|EMAPA:31250 in females it is represented by only a few muscle loops that envelop the round ligament of the uterus. This class represents the male structure http://upload.wikimedia.org/wikipedia/commons/6/67/Gray1143.png uberon owl:Class cremasteric UBERON:0008521 biolink:NamedThing gluteus minimus The smallest of the three gluteal muscles, situated immediately beneath the gluteus medius. monarch-merged.owl musculus gluteus minimus|glutaeus minimus|gluteus minimus|glutæus minimus|gluteus profundus|gluteus minimus muscle SCTID:181676004|FMA:22317|EMAPA:36230|Wikipedia:Gluteus_minimus_muscle http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG uberon owl:Class UBERON:0008576 biolink:NamedThing thyro-arytenoid The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords. monarch-merged.owl thyro-arytenoid %26 vocalis|thyreoarytaenoideus muscle|thyroarytænoideus|thyreoepiglotticus|thyreoarytænoideus muscle|thyro-arytenoid muscle|thyreoarytænoideus|thyroarytenoid muscle|ventricularis muscle|musculus thyroarytenoideus|thyroarytenoid|thyreoarytaenoideus|ventricularis NCIT:C33776|UMLS:C0224183|Wikipedia:Thyroarytenoid_muscle|FMA:46588|SCTID:361814004 http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png uberon owl:Class UBERON:0008585 biolink:NamedThing levator veli palatini The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side. monarch-merged.owl levator palati|levator velum palatini muscle|levator veli palatini muscle|levator veli|musculus levator veli palatini FMA:46727|Wikipedia:Levator_veli_palatini|SCTID:244795001 http://upload.wikimedia.org/wikipedia/commons/a/a5/Musculuslevatorvelipalatini.png uberon owl:Class The levator veli palatini is part of the soft palate that attaches to the cranial base, pharyngotympanic tube and the soft palate and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] UBERON:0008618 biolink:NamedThing subcostal muscle The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni. monarch-merged.owl musculus subcostalis|subcostales|subcostalis|subcostales muscles|subcostales muscle|subcostal muscles Wikipedia:Subcostalis_muscle|FMA:9759|SCTID:244914005 uberon owl:Class UBERON:0008777 biolink:NamedThing hypaxial musculature Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles. monarch-merged.owl hypaxial muscles|hypaxial muscle EMAPA:37852|AAO:0000228|Wikipedia:Epaxial_and_Hypaxial_muscles|XAO:0003228 uberon https://github.com/obophenotype/uberon/issues/686 owl:Class Trunk muscle that lies ventral to the horizontal septum of the vertebrae.[AAO] The hypaxial muscles are located on the lower side of the body, often below the horizontal septum in many species (primarily fish and amphibians). In amniotes, the positional distinctions have been lost as the body's muscles have changed through evolution, but in all species, the hypaxial muscles are innervated by the ventral ramus of the spinal nerves, while the epaxial muscles are innervated by the dorsal ramus. UBERON:0008778 biolink:NamedThing epaxial musculature Musculature that is derived from the epaxial myotome region, ventral to the horizontal septum of the vertebrae. Epaxial muscles include other (dorsal) muscles associated with the vertebrae, ribs, and base of the skull. monarch-merged.owl epaxial muscles|epaxial muscle EMAPA:37851|AAO:0000142|XAO:0003229 uberon owl:Class Trunk muscles that lies dorsal to the horizontal septum.[AAO]|the muscles derived from the medial myotome; includes the intrinsic back muscles In humans, the erector spinae, the transversospinal muscles (including the multifidus, semispinalis and rotatores), the splenius and suboccipital muscles are the only epaxial muscles|The hypaxial muscles are located on the lower side of the body, often below the horizontal septum in many species (primarily fish and amphibians). In amniotes, the positional distinctions have been lost as the body's muscles have changed through evolution, but in all species, the hypaxial muscles are innervated by the ventral ramus of the spinal nerves, while the epaxial muscles are innervated by the dorsal ramus. UBERON:0008779 biolink:NamedThing subclavius The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla. monarch-merged.owl subclavicular muscle|musculus subclavius NCIT:C33644|UMLS:C0224348|FMA:13410|Wikipedia:Subclavius_muscle http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray411subclavius.png uberon owl:Class UBERON:0008804 biolink:NamedThing stylopharyngeus muscle The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx. monarch-merged.owl stylopharyngeus|M. stylopharyngeus|musculus stylopharyngeus FMA:46664|UMLS:C1522014|Wikipedia:Stylopharyngeus_muscle|SCTID:244806000|NCIT:C33639 http://upload.wikimedia.org/wikipedia/commons/5/59/Musculusstylopharyngeus.png uberon owl:Class The stylopharyngeus is a pharyngeal arch III muscle that participates in oral/pharyngeal behaviors and is innervated by the n. to stylopharyngeus branch of the glossopharyngeal n. and attaches to the hyoid apparatus and the pharynx.[FEED] UBERON:0008842 biolink:NamedThing suspensory ligament of testis The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis. monarch-merged.owl scrotal ligament SCTID:279592009|Wikipedia:Scrotal_ligament uberon owl:Class UBERON:0008847 biolink:NamedThing ovarian ligament A fibrous ligament that connects the ovary to the lateral surface of the uterus. monarch-merged.owl ligament of ovary|proper ovarian ligament|ligamentum ovarii proprium SCTID:279915004|FMA:55422|Wikipedia:Ovarian_ligament The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium uberon owl:Class UBERON:0008876 biolink:NamedThing hypodermis skeletal muscle layer Any skeletal muscle organ in the hypodermis / superficial fascia|Any skeletal muscle organ in the hypodermis / superficial fascia. monarch-merged.owl hypodermal muscle layer|panniculus carnosus|superficial fascia muscular layer|hypodermis muscle layer MA:0003140|EMAPA:18188 We follow MP and treat this as part of the hypodermis, although some sources may consider the hypodermis to be superficial to this UBERON:0010934 uberon owl:Class UBERON:0008897 biolink:NamedThing fin An external projection of an aquatic animal as a fish used in propelling or guiding the body[BTO]. monarch-merged.owl fins Wikipedia:Fin|VSAO:0000099|TAO:0000108|OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA|ZFA:0000108|EFO:0000875|MESH:D058500|AAO:0010374|MAT:0000087|AEO:0001004|MIAA:0000087|BTO:0004649|SCTID:73003005|XAO:0000002 uberon owl:Class Surface structure involved in locomotion.[TAO]|Surface structure involved in locomotion.[VSAO] This class groups together various structures that may have arisen through convergent evolution, including, for example, the dorsal fin of a cetacean UBERON:0008977 biolink:NamedThing pes anserinus of tibia The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia. monarch-merged.owl pes anserinus of leg|pes anserinus|pes anserine http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2298|FMA:311256|Wikipedia:Pes_anserinus_(leg)|BTO:0001507|SCTID:360767004 Pes:anserinus.png Consider adding muscle insertion site class uberon owl:Class UBERON:0009132 biolink:NamedThing peroneus One of a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals|One of a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals. monarch-merged.owl peroneus muscle|peronæus muscle|peroneal muscle|peroneal muscles|fibularis|peroneal muscle group|fibularis muscle EMAPA:36251|EHDAA:8297|SCTID:181694005|Wikipedia:Fibularis_muscles|EHDAA2:0001450 uberon owl:Class UBERON:0009712 biolink:NamedThing endocardium of right ventricle Any endocardium that is part of the right ventricle of the heart. monarch-merged.owl right ventricular endocardium|right ventricle endocardium|right ventricle endocardial tissue|endocardial lining of right ventricle VHOG:0001235|EHDAA2:0002188|SCTID:8911002|EMAPA:17341|FMA:9536|NCIT:C102343 uberon owl:Class Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk. UBERON:0009713 biolink:NamedThing endocardium of left ventricle Any endocardium that is part of the left ventricle of the heart. monarch-merged.owl left ventricle endocardial tissue|left ventricular endocardium|endocardial lining of left ventricle|left ventricle endocardium FMA:9559|EMAPA:17338|SCTID:191004004|VHOG:0001233|EHDAA2:0002182 uberon owl:Class Endocardium of ventricle which is continuous with mitral valve, aortic valve, atrioventricular septum and the tunica intima of the aorta. UBERON:0009847 biolink:NamedThing prostate field A specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop. monarch-merged.owl prostate primordium uberon owl:Class UBERON:0009877 biolink:NamedThing metapodium region Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region.|Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region monarch-merged.owl metacarpus/metatarsus region|equine cannon region|metacarpal or metatarsal part of limb|metapodium|metapodial segment|metacarpus/metatarsus|cannon region SCTID:370640001 considering adding 'acropodial region' uberon owl:Class Naming conventions for pod terms under discussion within phenoscape group UBERON:0009878 biolink:NamedThing mesopodial skeleton The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton.|The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton monarch-merged.owl mesopodial skeleton|basipodium skeleton|skeletal parts of mesopodium|mesopodium skeleton|mesopodium|carpal/tarsal skeleton|basipodium VSAO:0005022 uberon owl:Class Limb skeleton subdivision consisting of endochondral bones increasing the freedom of movement of the autopodia, and located between zeugopodia and autopodia.[VSAO] relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: distally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO] UBERON:0010084 biolink:NamedThing future diaphragm A structure that will develop into a diaphragm. monarch-merged.owl EHDAA2:0000599 uberon owl:Class UBERON:0010234 biolink:NamedThing palatopharyngeus muscle The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch. monarch-merged.owl pharyngopalatinus muscle|palatopharyngeus|musculus palatopharyngeus|palatopharyngeal muscle|pharyngopalatinus Wikipedia:Palatopharyngeus_muscle|FMA:46666|SCTID:244796000 http://upload.wikimedia.org/wikipedia/commons/1/1b/Musculuspalatopharyngeus.png uberon owl:Class Palatopharyngeus is a muscle that attaches to the palatine bones, soft palate, and pharynx and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae UBERON:0010235 biolink:NamedThing uvular muscle The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]. monarch-merged.owl uvulae muscle|musculus uvulae|azygos uvulae|musculus uvulae muscle|m. uvulae|uvular muscle SCTID:244797009|FMA:46733|Wikipedia:Musculus_uvulae http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray169.png uberon owl:Class The muscle of the uvuli is an integral part of the soft palate and is innervated by Cranial Nerve X .[FEED] UBERON:0010271 biolink:NamedThing musculus retractor bulbi Cranial nerve VI innervated; ventral and posterior to the eye. monarch-merged.owl M. retractor bulbi|retractor bulbi|retractor bulbi muscle AAO:0010122 TODO - add innervation relationships uberon owl:Class In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection UBERON:0010298 biolink:NamedThing intramembranous scleral ossicle monarch-merged.owl are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991) uberon owl:Class The scleral ossicles [in reptiles] UBERON:0010379 biolink:NamedThing superior tarsal muscle The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid. monarch-merged.owl the superior tarsal muscle|mueller muscle|Müller's muscle|musculus tarsalis superior|Muller's muscle|Mueller's muscle Wikipedia:Superior_tarsal_muscle|SCTID:244775007|FMA:49058 http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle) uberon owl:Class UBERON:0010531 biolink:NamedThing metanephros induced blastemal cells . monarch-merged.owl nephrogenic interstitium|peripheral blastema|nephrogenic interstitium of nephrogenic zone|cap mesenchyme of metanephros of urinary system|induced blastemal cells EHDAA:7007|EHDAA:8105|EHDAA2:0001143|EMAPA:27621|EMAPA:17953|MA:0002998|VHOG:0001241 uberon owl:Class different versions of EMAPA have different labels for the same classes. In vHOG this is part of metanephros cortex but this leads to a cycle in basic. UBERON:0010543 biolink:NamedThing acropodial skeleton The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the autopodium - i.e. the bones of the digits or their cartilaginous precursors[VSAO,modified]. monarch-merged.owl acropodium skeleton|phalangeal skeleton|skeletal parts of acropodial region|acropodial skeleton|skeletal parts of acropodium|digits skeleton|set of phalanges|skeleton of digits|digital skeleton|acropodium FMA:231315|VSAO:0005028 uberon owl:Class UBERON:0010546 biolink:NamedThing metapodial skeleton Subdivision of skeleton that corresponds to metapodium region, between acropodial skeleton and mesopdoial skeleton. monarch-merged.owl skeleton of metapodium|metapodium skeleton|skeletal parts of metapodium|metapodial skeleton|metapodium|metacarpal/metatarsal skeleton VSAO:0005025 uberon owl:Class Endochondral bone complex located between the mesopodium and the acropodium and consisting of the metacarpals or metatarsals.[VSAO] relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: distally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]|relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: connected_to subdivision of skeleton (UBERON:0010912)[VSAO] UBERON:0010708 biolink:NamedThing pectoral complex Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle. monarch-merged.owl pectoral girdle plus pectoral limb or fin|upper limb|upper limb and shoulder|pectoral girdle plus anterior limb or fin|pectoral appendage/girdle complex|upper limb and pectoral girdle SCTID:110716002|VSAO:0000213|EMAPA:37860|FMA:7183 uberon owl:Class Appendage girdle complex that when present, encompasses the pectoral appendage and half of the pectoral girdle.[VSAO] note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region) UBERON:0010709 biolink:NamedThing pelvic complex Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle. monarch-merged.owl pelvic appendage/girdle complex|lower limb and pelvis|pelvic girdle plus pelvic limb or fin|lower limb and pelvic girdle|pelvic girdle plus posterior limb or fin|lower limb VSAO:0000215|FMA:7184|EMAPA:37863|SCTID:416631005 uberon owl:Class Appendage girdle complex that when present, encompasses the pelvic appendage and the pelvic girdle.[VSAO] note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here UBERON:0010719 biolink:NamedThing girdle skeleton The subdivision of the skeleton of either the pectoral or pelvic girdle. monarch-merged.owl skeleton of girdle VSAO:0000302|AAO:0010686 uberon owl:Class Skeletal subdivision that is part of the appendage girdle region.[VSAO] relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: part_of subdivision of skeleton (UBERON:0010912)[VSAO]|relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: proximally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO] UBERON:0010749 biolink:NamedThing middle pharyngeal constrictor The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle. monarch-merged.owl hyopharyngeus|constrictores pharyngis medius|constrictor medius|middle constrictor|musculus constrictor pharyngis medius|middle constrictor muscle|middle pharyngeal constrictor|middle constrictor pharyngeus|middle constrictor of pharynx|constrictor pharyngis medius UMLS:C1513291|NCIT:C33115|Wikipedia:Middle_pharyngeal_constrictor_muscle|FMA:46622|SCTID:244802003 http://upload.wikimedia.org/wikipedia/commons/8/8f/Musculusconstrictorpharyngismedius.png uberon owl:Class The middle constrictor is a pharyngeal arches 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus of Vagus and attaches to the hyoid apparatus and the midline raphe.[FEED] UBERON:0010928 biolink:NamedThing cricopharyngeus muscle The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. (from Vagus, CN X), and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus. monarch-merged.owl cricopharyngeal part|cricopharyngeal part of inferior constrictor pharyngeus|cricopharyngeal part of inferior pharyngeal constrictor|cricopharyngeus portion of the inferior pharyngeal constrictor|musculus cricopharyngeus|pars cricopharyngea musculus constrictoris pharyngis inferioris|cricopharyngeal part of inferior pharyngeal constrictor muscle|pars cricopharyngea (musculus constrictor pharyngis inferior)|cricopharyngeus SCTID:244804002|NCIT:C32401|UMLS:C0224214|MFMO:0000009|FMA:46661 muscle belly uberon owl:Class The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. , and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus.[FEED] UBERON:0010932 biolink:NamedThing crico-arytenoid muscle Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle. monarch-merged.owl cricoarytenoid|crico-arytenoid|cricoarytenoid muscle|cricoarytenoideus MA:0002283|Wikipedia:Cricoarytenoid_muscle|NCIT:C32398|EMAPA:37498|UMLS:C0448336|SCTID:244811003 http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png candidate for obsoletion. See https://github.com/obophenotype/uberon/issues/530 uberon https://github.com/obophenotype/uberon/issues/530 owl:Class UBERON:0010936 biolink:NamedThing thyropharyngeus muscle monarch-merged.owl thyropharyngeal part of inferior constrictor pharyngeus muscle|thyropharyngeal part of inferior constrictor pharyngeus|musculus thyropharyngeus|pars thyropharyngea (musculus constrictor pharyngis inferior)|thyropharyngeus|thyropharyngeal part of inferior pharyngeal constrictor|pars thyropharyngea musculus constrictoris pharyngis inferioris SCTID:244805001|FMA:46658 muscle belly uberon owl:Class UBERON:0010937 biolink:NamedThing salpingopharyngeus muscle The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus. monarch-merged.owl salpingopharyngeus|musculus salpingopharyngeus Wikipedia:Salpingopharyngeus_muscle|UMLS:C1521985|NCIT:C33510|FMA:46665|SCTID:244807009 http://upload.wikimedia.org/wikipedia/commons/e/e3/Salpingopharyngeus.png uberon owl:Class Salpingopharyngeus is a muscle that attaches to pharyngotympanic tube and the pharynx and is innervated by pharyngeal plexus of CN X and participates in oral/pharyngeal behaviors.[FEED] UBERON:0010946 biolink:NamedThing occipitofrontalis muscle The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone. monarch-merged.owl epicranius|occipitofrontalis|occipito-frontalis|musculus occipitofrontalis UMLS:C1518531|FMA:9624|SCTID:361811007|NCIT:C33198|Wikipedia:Occipitofrontalis_muscle http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png uberon owl:Class A zone of muscle in FMA UBERON:0010948 biolink:NamedThing cleidooccipital muscle A muscle organ that attaches_to a clavicle and attaches_to a occipital bone. monarch-merged.owl cleido-occipitalis|cleidooccipital|cleido-occipitalis muscle EMAPA:37688|NCIT:C52895|MA:0002276 Some studies have indicated a supernumerary cleido-occipital muscle more or less separate from the sterno-cleido-mastoid muscle; The frequency of cleido-occipital muscle occurrence has been reported up to 33% uberon owl:Class UBERON:0010954 biolink:NamedThing ceratohyoideus muscle The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED]. monarch-merged.owl ceratohyoideus MFMO:0000006 uberon owl:Class The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED] UBERON:0010958 biolink:NamedThing arytenoid muscle A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts. monarch-merged.owl arytaenoideus muscle|aryepiglotticus muscle|arytaenoideus NCIT:C32149|Wikipedia:Arytenoid_muscle|UMLS:C1510945 http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png TODO - check child relationships uberon owl:Class UBERON:0011012 biolink:NamedThing flexor pollicis brevis muscle The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part. monarch-merged.owl flexor pollicis brevis|musculus flexor pollicis brevis FMA:37378|SCTID:181646006|Wikipedia:Flexor_pollicis_brevis_muscle http://upload.wikimedia.org/wikipedia/commons/c/ca/Musculusflexorpollicisbrevis.png uberon owl:Class UBERON:0011016 biolink:NamedThing pyramidalis The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath. monarch-merged.owl pyramidalis muscle|pyramidalis|musculus pyramidalis Wikipedia:Pyramidalis_muscle|FMA:15568|UMLS:C0224374|NCIT:C33438|SCTID:244950003 http://upload.wikimedia.org/wikipedia/commons/9/91/Gray397.png uberon owl:Class UBERON:0011022 biolink:NamedThing flexor hallucis brevis muscle A muscle that originates from the cuboid bone and divides into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion. monarch-merged.owl flexor digit I brevis|m.flexor hallucis brevis|flexor hallucis brevis|musculus flexor hallucis brevis|flexor hallucis brevis muscle Wikipedia:Flexor_hallucis_brevis_muscle|SCTID:181730007|FMA:37449|EMAPA:36259 http://upload.wikimedia.org/wikipedia/commons/5/58/Musculus_flexor_hallucis_brevis.png uberon owl:Class UBERON:0011024 biolink:NamedThing extrinsic extensor muscle of manus The extrinsic extensor muscles of the hand are located in the back of the forearm and have long tendons connecting them to bones in the hand, where they exert their action. monarch-merged.owl extrinsic extensor muscle of hand Wikipedia:Extrinsic_extensor_muscles_of_the_hand uberon owl:Class UBERON:0011025 biolink:NamedThing aryepiglotticus muscle The aryepiglotticus is a muscle of the larynx running in the aryepiglottic fold from the arytenoid cartilage to the epiglottis. monarch-merged.owl musculus aryepiglotticus|aryepiglottic muscle|aryepiglottus|pars aryepiglottica musculus arytenoidei obliqui|pars aryepiglottica (musculus arytenoideus obliquus)|pars aryepiglottica musculi arytenoidei obliqui|aryepiglottus muscle|ary-epiglottic part of oblique arytenoid|aryepiglottic|aryepiglotticus UMLS:C0224177|Wikipedia:Aryepiglottic_muscle|NCIT:C32146|SCTID:244818009|FMA:46602 http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png uberon owl:Class UBERON:0011048 biolink:NamedThing obturator internus The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum. monarch-merged.owl musculus obturator internus|musculus obturatorius internus|internus obturator|obturator internus muscle|obturatorius internus|internal obturator NCIT:C33192|AAO:0010052|FMA:22298|Wikipedia:Obturator_internus_muscle|UMLS:C1518529|SCTID:245025008|EMAPA:36237 http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG uberon owl:Class Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.[AAO] Definition generalized to accommodate AAO class - 'Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.' [AAO:0010052] UBERON:0011136 biolink:NamedThing ligament of vertebral column Ligament that joins successive centra. Important in controlling the stiffness of the vertebral column when it flexes.|ligament that joins successive centra. Important in controlling the stiffness of the vertebral column when it flexes. monarch-merged.owl intervertebral ligament|vertebral centrum ligament|vertebral column ligament SCTID:244590009|FMA:31892 uberon owl:Class UBERON:0011144 biolink:NamedThing adductor muscle of hip . monarch-merged.owl muscle of adductor group|adductor group (leg) MA:0002267|EMAPA:19166|SCTID:368101007|SCTID:181670005|BTO:0000030|Wikipedia:Adductor_muscles_of_the_hip http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG uberon owl:Class UBERON:0011165 biolink:NamedThing crico-esophageal tendon Longitudinal fibers of the esophagus that attaches to the posterior aspect of the cricoid cartilage of the larynx. monarch-merged.owl tendo cricoesophageus|suspensory ligament of esophagus|cricoesophageal tendon|Gillette suspensory ligament|crico-oesophageal tendon FMA:76887|SCTID:322841005|NCIT:C32399|UMLS:C0227182 uberon owl:Class UBERON:0011287 biolink:NamedThing rostral organ A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelacanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve. monarch-merged.owl Wikipedia:Rostral_organ classification as electric organ is putative uberon owl:Class UBERON:0011305 biolink:NamedThing superficial part of temporalis The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia. monarch-merged.owl temporal muscle anterolateral part|temporales|temporalis anterior head|anterior temporal|temporalis pars superficialis|temporalis pars anterior MFMO:0000087 uberon owl:Class UBERON:0011312 biolink:NamedThing hyoepiglottic muscle monarch-merged.owl hyoepiglottus|hyoepiglotticus|hyo-epiglottic muscle Developed in mammals other than human. EDITOR NOTE: TODO add relationship to hyoepiglottic ligament. uberon owl:Class UBERON:0011364 biolink:NamedThing cleidocephalicus muscle The cleidomastoideus is a thick, strap-like muscle that together with the cleidocervicalis forms the proximal part of the brachiocephalicus. It lies beneath the cleidocervicalis. Its origin is the clavicular tendon with its insertion being at the mastoid process of the temporal bone. It is distinctly narrow and is united with the cleidocervicalis and cleidobrachialis by the clavicular tendon. Together with the other two components of the brachiocephalicus muscle, its primary function is to advance the free limb, however, it can also act as an shoulder extensor. Acting bilaterally, it fixes and depresses the neck, while by its unilateral action, it allows the head and neck to be drawn to the side. Its blood supply is the inferior cervical, carotid and vertebral arteries and its nerve supply is the spinal accessory, cervical and axillary nerves. monarch-merged.owl cleidocephalic|cleidomastoid|cleidocephalic muscle|cleidomastoideus|cleidomastoid muscle|pars mastoideus|cleidocephalicus NCIT:C52893|EMAPA:37687|UMLS:C1707412|MA:0002275 alt def: "Combination of cleidomastoid and cleidocervical muscles" uberon owl:Class UBERON:0011369 biolink:NamedThing omotransversarius muscle The omotransversarius is a straplike muscle, which advances and adducts the forelimb, as well as flexes the neck laterally. It covers the transverse processes of the cervical vertebrae, lying to their side. The omotransversarius lies ventral to the trapezius, cranial to the deltoid muscle and is covered cranially by the cleidocervicalis. It extends from the atlas to the spine of the scapula, with its origin on the transverse process of the atlas and its insertion in the distal end of the spine of the scapula. Its name can be split into omo, which is Greek for shoulder, and tranversarius which relates to its attachment to the transverse process of the atlas. This muscle is innervated by the accessory nerve. monarch-merged.owl omotransverse|omotransverse muscle UMLS:C1709311|NCIT:C52972|EMAPA:37690|MA:0002349 uberon owl:Class UBERON:0011371 biolink:NamedThing sternocephalicus muscle The sternocephalicus is a flat muscle and its caudal border is adjacent to the ventral border of the brachiocephalicus. The lateral aspect of this muscle is crossed obliquely by the external jugular vein. It originates as a unit on the first sternebrae. The cranial portion of the muscle divides into two separate sections with different insertion points. These are the sternomastoideus and the sterno-occipitalis. The ventral portion, the sternomastiodeus is the stronger and main continuation of the sternocephalicus, which inserts on the mastoid part of the temporal bone. The thin but wide dorsal segment, the sterno-occipitalis attaches to the dorsal nuchal crest by a thin aponeurosis. The main action provided by the sternocephalicus is movement of the head and neck to the side. Ventral branches of the cervical nerves are attached to this muscle. monarch-merged.owl sternocephalicus SCTID:21636001|NCIT:C117980 uberon owl:Class UBERON:0011389 biolink:NamedThing bulbospongiosus muscle The bulbospongiosus is the thick extrapelvic continuation of the urethralis. It originates from the perineal body (and midline raphe over corpus spongiosum in male) and inserts at the superficial perineal membrane and dorsal penile or clitoral aponeurosis. In males, the bulbospongiosus muscles are united and surround the base of the penis. They aid in emptying of urine and ejaculate from urethra. In females, these muscles are separated in the middle by the vagina and act to constrict the vaginal introitus. They can also stop the flow of blood into veins, which maintains an erection in the penis of the male and the clitoris of the female. Its nerve connection is the perineal branch of the pudendal nerve (S2, 3, 4). monarch-merged.owl musculus bulbospongiosus|bulbocavernosus|bulbospongiosus|bulbocavernosus muscle|bulbocavernous SCTID:244972001|Wikipedia:Bulbospongiosus_muscle|NCIT:C112234|FMA:19729|EMAPA:37454|MA:0003116 uberon owl:Class UBERON:0011472 biolink:NamedThing ventral lateral sacrocaudal muscle The ventral lateral sacrocaudal is a long strong muscle consisting of numerous individual parts. Its first segment originates from the last lumbar vertebrae and the remainder from the transverse processes of the caudal vertebrae. From the segmented bellies arise long tendons which are embedded in caudal fascia. The first of these tendons inserts onto the sixth caudal vertebrae, the second onto the seventh and so on until the last caudal vertebrae. The ventral lateral sacrocaudal acts to flex the tail and occasionally assists with lateral movement. monarch-merged.owl ventral lateral sacrocaudal|lumbosacrocaudalis muscle|lumbosacrocaudalis MURDOCH:2183|EMAPA:37658|MA:0002342 uberon owl:Class UBERON:0011495 biolink:NamedThing rectus thoracis muscle Rectus thoracis is a very small quadrilateral muscle sheet from the lateral thorax runs from the 3rd-1st rib that is in continuation with rectus abdominis. Its functioning muscle in respiration. monarch-merged.owl rectus thoracis EMAPA:37709|MA:0002366 uberon owl:Class UBERON:0011512 biolink:NamedThing puborectalis muscle The fibers which form a sling for the rectum are named the Puborectalis or Sphincter recti. They arise from the lower part of the symphysis pubis, and from the superior fascia of the urogenital diaphragm. They meet with the corresponding fibers of the opposite side around the lower part of the rectum, and form for it a strong sling. Relaxation reduces the angle between rectum and anus, allowing defecation in conjunction with relaxation of the internal and external sphincters. Puborectalis is part of the levator ani group of muscles. monarch-merged.owl sphincter recti|puborectalis SCTID:244962004|FMA:19091|Wikipedia:Puborectalis_muscle uberon owl:Class UBERON:0011533 biolink:NamedThing abductor pollicis, radioulna-prepollox Originates on the distal radioulna and inserts on the palmar prepollex. monarch-merged.owl m. abductor pollicis AAO:0010805 uberon owl:Class UBERON:0011564 biolink:NamedThing adductor pollicis muscle of prepollex Originates from the distal carpal 5-4-3 and inserts on the palmar prepollex. monarch-merged.owl m. adductor pollicis AAO:0010811 uberon owl:Class UBERON:0011582 biolink:NamedThing paired limb/fin skeleton The collection of all skeletal elements in an individual limb or fin. monarch-merged.owl skeletal parts of limb/fin|limb/fin skeleton|skeleton of limb/fin VSAO:0000301 uberon owl:Class Skeletal subdivision that is part of the paired limb/fin.[VSAO] UBERON:0011583 biolink:NamedThing stylopodial skeleton Proximal element of a free limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively[VSAO, modified]. monarch-merged.owl propodial skeleton|stylopodium|proximal metapterygial mesomere|stylopodium skeleton|mesomere 1|propodium|stylopod VSAO:0005007 uberon owl:Class Proximal element of the limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively.[VSAO] stylopodial|propodial UBERON:0011584 biolink:NamedThing zeugopodial skeleton Section of the forelimb skeleton located between the stylopodium and the autopodium. monarch-merged.owl epipodium|zeugopod skeleton|mesomere 2|zygopodium|epipodial skeleton|mesomere 2 skeleton|skeleton of zeugopod VSAO:0005010 uberon owl:Class zeugopodial|zygopodial UBERON:0011595 biolink:NamedThing jaw region A subdivision of the head that corresponds to the jaw skeleton, containing both soft tissue, skeleton and teeth (when present). The jaw region is divided into upper and lower regions. monarch-merged.owl EMAPA:32905|NCIT:C114916 uberon http://eol.org/collections/11578 owl:Class UBERON:0011645 biolink:NamedThing iliofemoralis muscle Limb extensor that runs from ilium to femur. monarch-merged.owl iliofemoralis uberon owl:Class UBERON:0011646 biolink:NamedThing patagialis muscle A muscle of the patagium that attaches to the clavicle and the metacarpal. monarch-merged.owl uberon owl:Class UBERON:0011792 biolink:NamedThing feather muscle Similar to erector pili muscles of mammals; attached to the sides of the follicle; capable of elevating or lowering entire groups of feathers. monarch-merged.owl uberon owl:Class UBERON:0011905 biolink:NamedThing plantaris Plantaris is a vestigial structure and one of the superficial muscles of the posterior crural compartment of the leg. It is innervated by the tibial nerve (S1, S2) . It is composed of a thin muscle belly and a long thin tendon. It is approximately 2-4 inches long, and is absent in 7 - 10% of the human population. It is one of the plantar flexors in the superior compartment of the leg along with the gastrocnemius, and soleus. The plantaris is considered an unimportant muscle, it mainly acts with gastrocnemius[WP]. monarch-merged.owl musculus plantaris|plantaris FMA:22543|EMAPA:36254|Wikipedia:Plantaris_muscle|EFO:0001979 todo - coordinate with phenoscape-ext on representation of amphibian plantaris longus and profundus uberon owl:Class UBERON:0011958 biolink:NamedThing acetabular labrum A ring of cartilage that surrounds the acetabulum[WP,unvetted]. monarch-merged.owl acetabular lip|cotyloid ligament|labrum acetabuli|labrum of acetabulum|acetabular rim|glenoidal labrum of hip joint AAO:0000864|FMA:43521|SCTID:182439007|SCTID:263366005|Wikipedia:Acetabular_labrum uberon owl:Class Cartilaginous ring that forms the entire acetabular margin[AAO:0000864]. Its function is to deepen the acetabulum, making it more difficult for the head of the femur to slip out of place (sublux) some sources treat this as fibrocartilage UBERON:0012135 biolink:NamedThing prepollex skeleton monarch-merged.owl cartilago pre-pollicis|prepollex AAO:0000852 A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. editor note: TODO add articulation relations uberon owl:Class UBERON:0012136 biolink:NamedThing prehallux monarch-merged.owl uberon owl:Class prehallical UBERON:0012140 biolink:NamedThing digitopodium region A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region. monarch-merged.owl acropodium (Wagner) uberon https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod owl:Class some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod UBERON:0012150 biolink:NamedThing skeleton of digitopodium A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton. monarch-merged.owl skeleton of digits|digitopodium uberon https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod owl:Class some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod UBERON:0012353 biolink:NamedThing fin skeleton Skeletal subdivision consisting of all the skeletal elements in a single fin. monarch-merged.owl skeleton of fin uberon owl:Class UBERON:0012354 biolink:NamedThing acropodium region The segment of the autopod that is distal to the metapodial region and consists of the digits. monarch-merged.owl set of digits|acropodial region|acropodial limb segment|acropodial segment of autopod class refers to an entire limb segment, not just the bones uberon owl:Class UBERON:0012475 biolink:NamedThing skeleton of pectoral complex The collection of all skeletal elements in a pectoral complex - i.e. the combination of free limb or fin plus pectoral girdle. monarch-merged.owl skeleton of anterior limb/fin and girdle|ossa membri superioris|upper limb skeleton|set of bones of upper limb|bones of upper limb|pectoral complex skeleton FMA:24139 uberon owl:Class UBERON:0012476 biolink:NamedThing skeleton of pelvic complex The collection of all skeletal elements in a pelvic complex - i.e. the combination of free limb or fin plus pelvic girdle. monarch-merged.owl skeleton of posterior limb/fin and girdle|ossa membri inferioris|bones of lower limb|lower limb skeleton|pelvic complex skeleton|set of bones of lower limb FMA:24140 uberon owl:Class UBERON:0012649 biolink:NamedThing anococcygeus muscle One of a pair of thin sheets of smooth muscle inserting on the rectum, having a tendinous origin largely on sacral vertebrae. monarch-merged.owl AcM|anococcygeus BTO:0005150|EMAPA:37396|MA:0001533 uberon owl:Class UBERON:0013114 biolink:NamedThing compressor glandulae muscle A prominent compressor muscle found in poisonous snakes that originates in the lower jaw, sweeps around the venom gland, and inserted on the gland's surface. The muscles acts to squeeze the gland and release venom. monarch-merged.owl only found in crotaline snakes, and has a spotty distribution within that group uberon owl:Class UBERON:0013138 biolink:NamedThing coronary ligament of liver The coronary ligament of the liver refers to parts of the peritoneal reflections that hold the liver to the inferior surface of the diaphragm. monarch-merged.owl ligamentum coronarium hepatis|ligamentum coronarium|coronary ligament|ligamentum coronaria UMLS:C1261099|FMA:15822|Wikipedia:Coronary_ligament|SCTID:279967000|NCIT:C32377 uberon owl:Class UBERON:0013221 biolink:NamedThing caudofemoralis The caudofemoralis (from the latin cauda, tail and femur, thighbone) is a muscle found in the pelvic limb of mostly all animals possessing a tail, since it is a synapomorphy appeared on the Archosauria clade. It is thus found in felids (cats) and Mustela ('Weasels'), but also on crocodiles and birds. monarch-merged.owl M. caudofemoralis|caudofemoralis muscle Wikipedia:Caudofemoralis|EMAPA:36226 uberon owl:Class The Caudofemoralis acts to flex the tail laterally to its respective side when the pelvic limb is bearing weight. When the pelvic limb is lifted off the ground, contraction of the Caudofemoralis causes the limb to abduct and the shank to extend by extending the hip joint (acetabulofemoral or coxofemoral joint) UBERON:0013511 biolink:NamedThing ambiens muscle A long muscle found in reptiles that originates on the ilium and crosses the acetabulum and the knee joint before being inserted on the tibia. monarch-merged.owl ambiens uberon owl:Class The tendon of the ambiens muscle passes obliquely over the knee joint. It assists in the control of the bird's toes. This muscle is present in some reptiles but not mammals. It is present in caiques and some other South American genera, but missing in most parrot genera. This was first noted by Garrod (1874) who proposed using this and other anatomical differences to classify parrots. For oproperty_value external_definitionanatomical differences among parrots see carotid arteries, furcula, and uropygial gland UBERON:0013653 biolink:NamedThing velar skeleton Subdivision of skeleton that is part of the velum and consists of a complex arrangement of thin cartilage rods and arches. monarch-merged.owl skeleton of velum uberon owl:Class UBERON:0013700 biolink:NamedThing axial musculature Musculature of the head and neck, spine, and ribs. monarch-merged.owl EMAPA:18166|EHDAA2:0000159 uberon owl:Class UBERON:0013715 biolink:NamedThing ilio-marsupialis muscle A muscle that originates on the anterior iliac spine that passes through the inguinal canal before dividing into four branches, each attaching to a pouch nipple. monarch-merged.owl M. ilio-marsupialis|M. compressor mammae|ilio-marsupialis|compressor mammae uberon owl:Class in pouchless marsupials provides mechanical support for the attached young [DOI:10.1046/j.1469-7580.2002.00087.x]|Associated with lumbar musculature. originally postulated to be involved in milk ejection, or for mammary support and for retraction of the teats.|In pouched marsupials, the ilio-marsupialis is less well developed, but may help in gland contraction to express milk during suckling (Griffiths & Slater, 1988) and it carries the genitofemoral nerve that innervates the mammary gland (Renfree, 1979) [DOI:10.1046/j.1469-7580.2002.00087.x] UBERON:0013716 biolink:NamedThing branch of ilio-marsupialis muscle One of the branches of the ilio-marsupialis that attaches to a pouch nipple. monarch-merged.owl retractor mammae uberon owl:Class UBERON:0014380 biolink:NamedThing flexor digitorum brevis muscle The flexor digitorum brevis lies in the middle of the sole of the foot, immediately above the central part of the plantar aponeurosis, with which it is firmly united. Its deep surface is separated from the lateral plantar vessels and nerves by a thin layer of fascia. monarch-merged.owl flexor digitorum brevis|musculus flexor digitorum brevis|flexor digitorum brevis of foot SCTID:79490000|SCTID:181724007|FMA:37450|Wikipedia:Flexor_digitorum_brevis_muscle|EMAPA:36247 uberon owl:Class UBERON:0014765 biolink:NamedThing crus of diaphragm The domain of the diaphragm that is located dorsally and attaches to the vertebrae and surrounds the esophagus and aorta. monarch-merged.owl crura of the diaphragm|diaphragmatic crura|diaphragm crura|crural diaphragm|crus of the diaphragm Wikipedia:Crus_of_diaphragm|SCTID:244668003|EMAPA:17703|VHOG:0001546|EHDAA2:0000597 Classification notes: May be considered an external sphincter[PMID:8224664] uberon owl:Class UBERON:0014797 biolink:NamedThing hypobranchial group muscle A jaw muscle that arises from trunk somites and is innervated by spinal nerves. monarch-merged.owl uberon owl:Class UBERON:0014842 biolink:NamedThing puboischiofemoralis muscle A dorsal muscle of lower tetrapods. monarch-merged.owl uberon owl:Class UBERON:0014888 biolink:NamedThing iliotibialis muscle A muscle in amphibians that connects originates in the ilium and inserts in the tibia. monarch-merged.owl iliotibilias|m. iliotibilias uberon owl:Class UBERON:0014895 biolink:NamedThing somatic muscle A muscle structure of invertebrates whose origin and insertion sites are in basal side of the epidermis or structures derived from it. The simplest somatic muscles consist of a single cell and associated extracellular structures. monarch-merged.owl skeletal muscle FBbt:00005073|HAO:0001922 uberon owl:Class The muscle that is attached at either end to the cuticle[HAO]. UBERON:0015430 biolink:NamedThing levator auris longus muscle Muscle organ located on the dorsal surface of the head innervated by the facial nerve. monarch-merged.owl levator auris longus|LAL EMAPA:36627|MA:0002758 uberon owl:Class UBERON:0015875 biolink:NamedThing heel The part of the foot that is the projection of the calcaneus. monarch-merged.owl heel region|regio calcanea|calcaneal region MESH:D006365|SCTID:362804005|FMA:24994|Wikipedia:Heel uberon owl:Class UBERON:0016493 biolink:NamedThing palmaris longus muscle The palmaris longus is seen as a small tendon between the flexor carpi radialis and the flexor carpi ulnaris, although it is not always present. The muscle is absent in about 14 percent of the population, however this varies greatly with ethnicity. Absence of palmaris does not have any known effect on grip strength. Palmaris longus can be palpated by touching the pads of the fifth and first fingers and flexing the wrist. The tendon, if present, will be very visible. monarch-merged.owl palmaris|musculus palmaris longus|palmaris longus SCTID:181636009|Wikipedia:Palmaris_longus_muscle|EMAPA:36205|AAO:0010737|FMA:38462 uberon owl:Class UBERON:0016496 biolink:NamedThing tendon of palmaris longus monarch-merged.owl palmaris longus tendon|tendon of palmaris longus muscle FMA:38594 uberon owl:Class UBERON:0017196 biolink:NamedThing retractor lateralis muscle monarch-merged.owl m. retractor lateralis|retractor lateralis UBERONTEMP:65267252-c554-4d25-acbb-e1d1a95d1367 uberon owl:Class UBERON:0017615 biolink:NamedThing vomerine dentition A set of teeth in which each tooth that attaches to a vomer. monarch-merged.owl vomerine teeth AAO:0000635 uberon owl:Class UBERON:0018155 biolink:NamedThing posterior incudal ligament A fold of mucous membrane that runs from the fossa incudus to the incus. monarch-merged.owl uberon owl:Class UBERON:0018156 biolink:NamedThing malleal ligament A skeletal ligament that attaches to the malleus. monarch-merged.owl uberon owl:Class UBERON:0018161 biolink:NamedThing annular ligament of stapes A ring of fibrous tissue that connects the base of the stapes to the oval window of the inner ear. monarch-merged.owl annular ligament|annular stapedial ligament|annular ligament of base of stapes|ligamentum anulare stapedis SCTID:368936007|FMA:60884|Wikipedia:Annular_ligament_of_stapes uberon owl:Class UBERON:0018544 biolink:NamedThing trigeminal nerve muscle Muscle innervated by the trigeminal nerve (Cranial Nerve V). monarch-merged.owl muscles innervated by the trigeminal nerve|muscle innervated by the trigeminal nerve MFMO:0000072 uberon owl:Class UBERON:0019201 biolink:NamedThing gemellus muscle One of the two small muscular fasciculi, accessories to the tendon of the Obturator internus which is received into a groove between them. monarch-merged.owl FMA:22319|EMAPA:36227|SCTID:245021004 uberon owl:Class UBERON:0034908 biolink:NamedThing scapular muscle Any of the muscles that are responsible for moving the scapula. In humans these are the levator scapulae, the infraspinatus muscle, the teres major, the teres minor, and the supraspinatus muscle. monarch-merged.owl uberon owl:Class UBERON:0034941 biolink:NamedThing blood sinus of vibrissa The sinuses of Vibrissae are the walls of blood spaces surrounding the roots of vibrissae. monarch-merged.owl ring sinus|sinuses of vibrissae|vibrissa sinus|blood sinus|lower cavernous sinus|upper cavernous sinus|sinus of vibrissa uberon owl:Class UBERON:0035555 biolink:NamedThing lateral line sense organ monarch-merged.owl ensure pit organ classifies here uberon owl:Class UBERON:0035831 biolink:NamedThing costal diaphragm The domain of the diaphragm that is a thin domed sheet of muscle composed of a radial array of myofibers extending laterally from the ribs and medially to a central tendon. monarch-merged.owl costal part of diaphragm|pars costalis diaphragmatis FMA:58277|SCTID:368048007 uberon owl:Class UBERON:0035832 biolink:NamedThing caval sphincter A striated muscle sphincter that is an extension of the diaphragm and surrounds the vena cava. monarch-merged.owl vena cava sphincter uberon owl:Class upon stimulation of right phrenic nerve, may cause complete closure of the caval passage to the right heart UBERON:0035845 biolink:NamedThing enthesis The connective tissue between tendon and bone insertion sites, which acts to transmit tensile load from soft tissues to bone. They may be of the dense fibrous connective tissue or fibrocartilage type; fibrous entheses attach directly to bone or periosteum primarily via fibrous tissue, and fibrocartilaginous entheses attach to bone through a transitional layer of fibrocartilage from the fibrous tendon tissue the sites where tendons or ligaments insert into the bone. Recurring stress or inflammatory autoimmune disease can cause inflammation or occasionally fibrosis and calcification of the enthesis. monarch-merged.owl Wikipedia:Enthesis|SCTID:410054009 uberon owl:Class UBERON:0036148 biolink:NamedThing orovelar muscle . monarch-merged.owl uberon owl:Class UBERON:0037144 biolink:NamedThing wall of heart Wall of organ which has as its parts the endocardium, myocardium , epicardium, and the cardiac septum, surrounded by the pericardial sac proper and is continuous with the walls of the systemic and pulmonary arterial and venous trees.|wall of organ which has as its parts the endocardium, myocardium , epicardium, and the cardiac septum, surrounded by the pericardial sac proper and is continuous with the walls of the systemic and pulmonary arterial and venous trees. monarch-merged.owl cardiac wall FMA:7274 uberon owl:Class UBERON:2000694 biolink:NamedThing ceratobranchial 5 tooth Tooth that forms on ceratobranchial 5 cartilage or bone. monarch-merged.owl pharyngeal teeth ZFA:0000694 Ceratobranchial 5 teeth are the only teeth present in zebrafish and other cypriniforms. teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001633 biolink:NamedThing entopterygoid tooth Tooth that is attached to the entopterygoid bone. monarch-merged.owl mesopterygoid tooth teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:4200121 biolink:NamedThing puboischiotibialis muscle A muscle that originates from the puboischaidic plate and inserts on the tibia. Acts to adduct the hindlimb. Is anterior to cloacal gland in males. Modified from De luliis and Pulera. monarch-merged.owl puboischiotibialis|M. puboischiotibialis UBERON:0011914 uberon owl:Class Homologous to mammalian gracilis [ISBN:0073040584] UBERON:4200122 biolink:NamedThing pubotibialis Originates in on the pubic cartillage and inserts on the tibia, acts to adduct the hindlimb. Modified from De luliis and Pulera. monarch-merged.owl AD uberon owl:Class UBERON:4300135 biolink:NamedThing upper jaw symphyseal tooth Tooth of the upper jaw that is adjacent to the upper jaw symphysis. monarch-merged.owl upper jaw symphysial tooth WD uberon owl:Class UBERON:5002544 biolink:NamedThing digit plus metapodial segment A subdivision of the autopod consisting of digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis. monarch-merged.owl digit|digit ( phalanges plus metapodial) plus soft tissue|digit digitopodial subdivision|digit ray this class represents a series of phalanges plus a metapodial element plus associated soft tissues. Instances of this class typically do not form a distinct unit. uberon owl:Class UBERON:5102544 biolink:NamedThing individual digit of digitopodial skeleton A subdivision of the skeleton of the autopod consisting of the phalanges of a single digit plus the associated metapodial element. monarch-merged.owl digit|digit skeleton this class represents a series of phalanges plus a metapodial element. In comparative anatomy terminology we would call this a 'digit', but the label 'digit' is sometimes used to exclude metapodials and to include soft tissue. This series of elements is hypothesized to be homologous to radials. uberon owl:Class BSPO:0000087 biolink:NamedThing anterior compartment monarch-merged.owl FBql:00005874|FBcv:0000031 spatial owl:Class BSPO:0000088 biolink:NamedThing compartment boundary monarch-merged.owl FBcv:0000032|FBql:00005878 spatial owl:Class BSPO:0000089 biolink:NamedThing dorsal compartment monarch-merged.owl FBql:00005876|FBcv:0000035 spatial owl:Class BSPO:0000093 biolink:NamedThing anterior/posterior compartment boundary monarch-merged.owl FBcv:0000033|FBql:00005880 spatial owl:Class BSPO:0000371 biolink:NamedThing anterior surface Anatomical surface that is located on the anterior side of the body or body part. monarch-merged.owl FBql:00005848 spatial owl:Class BSPO:0000372 biolink:NamedThing posterior surface Anatomical surface that is located on the posterior side of the body or body part. monarch-merged.owl FBql:00005849 spatial owl:Class BSPO:0000373 biolink:NamedThing apical surface Anatomical surface that is located on the apical side of the body or body part. monarch-merged.owl FBql:00005854 spatial owl:Class BSPO:0000374 biolink:NamedThing basal surface Anatomical surface that is located on the basal side of the body or body part. monarch-merged.owl FBql:00005855 spatial owl:Class BSPO:0000376 biolink:NamedThing contralateral surface monarch-merged.owl FBql:00005851 spatial owl:Class BSPO:0000377 biolink:NamedThing proximal surface Anatomical surface that is located on the proximal side of the body or body part. monarch-merged.owl FBql:00005852 spatial owl:Class BSPO:0000378 biolink:NamedThing distal surface Anatomical surface that is located on the distal side of the body or body part. monarch-merged.owl FBql:00005853 spatial owl:Class BSPO:0000379 biolink:NamedThing dorsal surface Anatomical surface that located on the dorsal side of the body or body part. monarch-merged.owl FBql:00005842 spatial owl:Class BSPO:0000381 biolink:NamedThing ipsilateral surface Anatomical surface that is located on the same side of an organism or structure. monarch-merged.owl FBql:00005850 spatial owl:Class BSPO:0000382 biolink:NamedThing lateral surface Anatomical surface that located on the lateral side of the body or body part. monarch-merged.owl FBql:00005844 spatial owl:Class BSPO:0000383 biolink:NamedThing medial surface Anatomical surface that located on the medial side of the body or body part. monarch-merged.owl FBql:00005847 spatial owl:Class BSPO:0000384 biolink:NamedThing ventral surface Anatomical surface that is located on the ventral side of the body or body part. monarch-merged.owl FBql:00005843 spatial owl:Class BSPO:0000673 biolink:NamedThing apical margin Anatomical margin that is located on the apical side of the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000674 biolink:NamedThing basal margin Anatomical margin that is located on the basal side of the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000677 biolink:NamedThing proximal margin Anatomical margin that is located on the proximal region of the body or body part. monarch-merged.owl spatial owl:Class BSPO:0000678 biolink:NamedThing distal margin Anatomical margin that is located on the distal side of the body or body part. monarch-merged.owl spatial owl:Class BSPO:0001001 biolink:NamedThing medial-lateral axis An axis that extends from the center of organism to one or other side. monarch-merged.owl medio-lateral axis|ML axis|mediolateral axis|M-L axis|proximal-distal axis http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart. spatial owl:Class OBO:CARO_0000000 biolink:NamedThing anatomical entity Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.|A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. monarch-merged.owl Following BFO, material anatomical entities may have immaterial parts (the lumen of your stomach is part of your stomach). The granularity limit follows the limits set by the Gene Ontology on the granularity limit for GO:cellular_component. Note that substances produced by an organism (sweat, feaces, urine) do not need to be part of an organism to qualify as an anatomical structure. spatial owl:Class OBO:CARO_0001008 biolink:NamedThing gross anatomical part Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells. monarch-merged.owl 10.7.2011 mah owl:Class OBO:CARO_0020000 biolink:NamedThing disconnected anatomical group Material anatomical entity consisting of multiple anatomical structures that are not connected to each other. monarch-merged.owl owl:Class OBO:CARO_0020003 biolink:NamedThing cellular anatomical structure An anatomical structure consisting of one or more cells. monarch-merged.owl dos 2018-09-28 14:20:19+00:00 owl:Class OBO:CARO_0000004 biolink:NamedThing organism substance Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism's own genome. monarch-merged.owl portion of organism substance Note - CARO explicitly declares organisms substances to be part of (some) organism. Examples include feces, urine, blood, blood plasma, lymph, hemolymph, cerbro-spinal fluid. This class does not encompass anatomical entities with inherent 3D structure such as dentine and arthropod cuticle. owl:Class FAO:0000043 biolink:NamedThing conidiophore A specialized hypha, often aerial, that gives rise to asexual spores known as conidia. monarch-merged.owl owl:Class FAO:0000048 biolink:NamedThing Hulle cell A specialized multinucleate cell that originates from a nest-like aggregation of hyphae during sexual development. Hulle cells serve as nurse cells to the developing cleistothecium. monarch-merged.owl owl:Class OBO:FBbt_10000000 biolink:NamedThing anatomical entity Anatomical entity which is part_of Drosophila melanogaster. monarch-merged.owl Drosophila anatomical entity (drosophila) FBbt_root:00000000 fly_anatomy.ontology owl:Class GO:0110165 biolink:NamedThing cellular anatomical entity A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. monarch-merged.owl kmv 2019-08-12T18:01:37Z cellular_component owl:Class PO:0009049 biolink:NamedThing inflorescence A reproductive shoot system (PO:0025082) that has as parts all of the shoot axes (PO:0025029) and flowers (PO:0009046; must have two or more) distal to the most distal leaf (PO:0009025). monarch-merged.owl Triticeae spike (narrow)|花序 (Japanese, exact)|inflorescencia (Spanish, exact) owl:Class UBERON:0000002 biolink:NamedThing uterine cervix Lower, narrow portion of the uterus where it joins with the top end of the vagina. monarch-merged.owl cervix of uterus|cervix uteri|cervix|caudal segment of uterus|neck of uterus|cervical canal|canalis cervicis uteri|uterine cervix|cervical canal of uterus SCTID:181453009|Wikipedia:Cervix|UMLS:C0007874|GAID:376|EFO:0000979|EMAPA:29927|FMA:17740|MESH:D002584|EV:0100114|OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA|NCIT:C12311|BTO:0002249|galen:CervixUteri|BTO:0001421|CALOHA:TS-0134|MAT:0000292|VHOG:0001359|MA:0000392 uberon owl:Class The narrow caudal end of the uterus that opens into the vagina. [TFD][VHOG] The evolution of mammals is associated with radical changes in their reproductive biology, particularly the structure and function of the female reproductive organs. These changes include the evolution of the uterus, cervix, vagina, placenta and specialized cell types associated with each of those structures.[well established][VHOG] cervical UBERON:0000005 biolink:NamedThing chemosensory organ monarch-merged.owl chemosensory sensory organ FBbt:00005157 uberon owl:Class UBERON:0000010 biolink:NamedThing peripheral nervous system A major division of the nervous system that contains nerves which connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands. monarch-merged.owl systema nervosum periphericum|PNS|pars peripherica BTO:0001028|TAO:0000142|EFO:0000891|XAO:0000178|MAT:0000338|MIAA:0000338|SCTID:362292005|MESH:D017933|MA:0000218|Wikipedia:Peripheral_nervous_system|EMAPA:16665|EV:0100335|FMA:9903|NCIT:C12465|GAID:715|ZFA:0000142|EHDAA2:0001445|AAO:0000429|VHOG:0000399|BAMS:PNS|BILA:0000081|FBbt:00005098|CALOHA:TS-0808|UMLS:C1305921|BIRNLEX:1111|EHDAA:2893|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3232|UMLS:C0206417 http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png uberon owl:Class The peripheral nervous system (PNS) is the part of the nervous system connected to the CNS which contains cranial nerves III - XII, spinal, peripheral and autonomic nerves. (CUMBO)|Part of nervous system in which nerves extend throughout the body outside of the brain and spinal cord.[AAO]|Nervous structures including ganglia outside of the central nervous system. Kimmel et al, 1995.[TAO] (...) specific vertebrate traits within the chordate phylum such as skeletal tissues, PNS, and spectacular head and brain development, are linked to the NC (neural crest) and its derivatives.[well established][VHOG] UBERON:0000012 biolink:NamedThing somatic nervous system Part of peripheral nervous system that includes the somatic parts of the cranial and spinal nerves and their ganglia and the peripheral sensory receptors. monarch-merged.owl somatic nervous system, somatic division|somatic part of peripheral nervous system|PNS - somatic|somatic peripheral nervous system MAT:0000099|EFO:0000892|NLXANAT:100301|FMA:9904|MA:0002850|MIAA:0000099|Wikipedia:Somatic_nervous_system uberon owl:Class UBERON:0000013 biolink:NamedThing sympathetic nervous system The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]. monarch-merged.owl pars sympathica divisionis autonomici systematis nervosi|sympathetic part of autonomic division of nervous system|sympathetic nervous system CALOHA:TS-2050|SCTID:362484004|MESH:D013564|UMLS:C1269646|EMAPA:16985|NCIT:C12795|FMA:9906|EHDAA:3769|GAID:710|Wikipedia:Sympathetic_nervous_system|BTO:0001832|MIAA:0000100|BIRNLEX:2516|EHDAA2:0001971|TAO:0001576|UMLS:C0039044|ZFA:0001576|MA:0000225|AAO:0010487|EFO:0000893|VHOG:0000384 http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png uberon owl:Class The part of the autonomic nervous system which chiefly contains adrenergic fibres and tends to control and reduce secretions, decrease the contractility and hence the tone of smooth muscles and provoke the contraction of blood vessels. Essentially, it consists of preganglionic fibres from the thoracic and upper lumbar parts of the spinal cord. These fibres, by means of delicate rami communicantes, cross over to ganglia sited in a pair of ganglionated cords on each side of the vertebral column or to more peripheral ganglia. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]|Part of the autonomic nervous system which has opposing physiological effects of the parasympathetic nervous system. Examples include increasing the heart rate or constricting the blood vessels.[AAO] The autonomic nervous system is composed of three divisions: the sympathetic division, the parasympathetic division, and the enteric division. (...) In ray-finned teleost fishes, a sympathetic chain is present, and dual innervation of additional organs can be observed. A similar pattern can be found in amphibians (...). The evolution of the autonomic nervous system has been quite conservative, especially in the tetrapod lineage.[well established][VHOG] has developmental contribution from NC in verteberates (https://github.com/obophenotype/uberon/wiki/The-neural-crest) UBERON:0000014 biolink:NamedThing zone of skin Any portion of the organ that covers that body and consists of a layer of epidermis and a layer of dermis. monarch-merged.owl portion of skin|skin zone|skin|region of skin|skin region EMAPA:17525|SCTID:20795001|MIAA:0000284|MA:0000151|Wikipedia:Skin|MESH:D012867|EV:0100152|VHOG:0000860|FMA:86166|OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA|GAID:933|EHDAA:6530|EHDAA2:0001844|MAT:0000284 Note the distinction between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg|http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg uberon owl:Class (...) it is well-established that neural crest cells contribute to both the dermal skeleton (craniofacial bone, teeth, and the caudal fin rays of teleosts) and the integument, including craniofacial dermis and all pigment cells outside the retina (...).[well established][VHOG] we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive UBERON:0000018 biolink:NamedThing compound eye A light sensing organ composed of ommatidia|A light sensing organ composed of ommatidia. monarch-merged.owl zusammengesetztes Auge|faceted eye|Komplexauge|adult compound eye|insect eye|Facettenauge TGMA:0000024|BTO:0001921|HAO:0000217|Wikipedia:Compound_eye|FBbt:00004508 uberon https://github.com/obophenotype/uberon/issues/457 owl:Class The term compound eye is sometimes used for the multi-unit eyes of annelids, bivalves, echinoderms. We follow Richter et al and restrict this class to the arthropod structure for these structures UBERON:0000029 biolink:NamedThing lymph node Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph. monarch-merged.owl lymph gland|nodus lymphaticus TAO_RETIRED:0005318|ZFA_RETIRED:0005318|EV:0100050|NCIT:C12745|VHOG:0001273|MA:0000139|CALOHA:TS-0579|galen:Lymphnode|FMA:5034|Wikipedia:Lymph_node|NCIT:C33027|MAT:0000442|UMLS:C0024204|BTO:0000784|MESH:D008198|SCTID:181756000|EMAPA:35523|OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA|GAID:947|EFO:0000872 http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png uberon https://github.com/obophenotype/uberon/issues/650 owl:Class Lymph nodes that are associated with the lymphatic system have evolved in mammals.[well established][VHOG] UBERON:0000038 biolink:NamedThing follicular fluid The fluid surrounding the ovum and granulosa cells in the ovarian follicle. monarch-merged.owl ovary follicle fluid|ovarian follicular fluid|antral fluid, ovarian follicle|liquor folliculi|liquor follicularis|ovary follicular fluid BTO:0004383|Wikipedia:Follicular_fluid|MESH:D015571|FMA:18665|MA:0002511|UMLS:C1709369|GAID:372|NCIT:C52556|CALOHA:TS-0728 http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png uberon owl:Class Generally, larger species such as ovine, equine, porcine, human, and bovine have larger follicles, with the fluid comprising a substantial proportion of the volume of the follicles at ovulation (estimated at >95% in bovine [3]). Smaller species such as rats and mice have smaller follicles with fractionally less follicular fluid[20164441] The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes and is rich in hyaluronic acid. UBERON:0000039 biolink:NamedThing follicular antrum Region of ovarian follicle filled with follicular fluid. monarch-merged.owl antrum folliculare|antrum follicularum|ovarian follicle antrum|antral cavity EMAPA:37867|FMA:18675|Wikipedia:Follicular_antrum uberon owl:Class UBERON:0000045 biolink:NamedThing ganglion A biological tissue mass, most commonly a mass of nerve cell bodies. monarch-merged.owl neural ganglion|ganglia MAT:0000343|BTO:0000497|ZFA:0000190|NLXANAT:100302|EFO:0000899|WBbt:0005189|EHDAA:918|AAO:0010426|EHDAA:5621|TGMA:0001016|EV:0100372|EHDAA:2897|VHOG:0000156|MESH:D005724|MIAA:0000207|MAT:0000207|FMA:5884|Wikipedia:Ganglion|XAO:0000209|MIAA:0000343|TAO:0000190|BAMS:G|CALOHA:TS-0397|AEO:0000135|EHDAA:4662|EMAPA:32846|UMLS:C0017067|EHDAA2:0003135|NCIT:C12719|FBbt:00005137|MA:0002406 TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. uberon owl:Class A ganglion is a cluster of neurons. It is part of a nervous system. It may include glial cells. The neurons are arranged in a specific constellation: neuronal somata are concentrated at the surface, thus forming a cell cortex, and neurites are concentrated in the centre of the ganglion to form the neuropil. A ganglion is a distinct unit but several ganglia may be anterio-posteriorly joined by connectives or transversally by commissures|Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]|Subdivision of nervous system which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord. Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion (adapted from Foundational Model of Anatomy)[NLXANAT:100302].|Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)[TAO] Cranial sensory placodes are focused areas of the head ectoderm of vertebrates that contribute to the development of the cranial sense organs and their associated ganglia. Placodes have long been considered a key character of vertebrates, and their evolution is proposed to have been essential for the evolution of an active predatory lifestyle by early vertebrates.[well established][VHOG] ganglionic UBERON:0000051 biolink:NamedThing fornix of vagina The deepest portions of the vagina, extending into the recesses created by the vaginal portion of cervix[WP,unvetted]. monarch-merged.owl vaginal fornix|fornix vaginae|fornix|vaginal fornices SCTID:245475003|UMLS:C0227794|Wikipedia:Vaginal_fornix|NCIT:C33848|FMA:19985 Female:anatomy.png uberon owl:Class UBERON:0000073 biolink:NamedThing regional part of nervous system Any part or collection of parts of the central or peripheral nervous system. Parts may span both CNS and PNS. monarch-merged.owl part of nervous system UMLS:C1518256|NCIT:C13040|BIRNLEX:1157|SCTID:25087005 Melissa Haendel 2009-06-18T09:00:04Z uberon owl:Class UBERON:0000076 biolink:NamedThing external ectoderm The surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm. monarch-merged.owl surface ectoderm|surface (external) ectoderm EHDAA:4790|EHDAA:350|EHDAA:4796|EHDAA:1494|EHDAA:4784|EMAPA:16096|Wikipedia:External_ectoderm|NCIT:C34309|EHDAA2:0001968|UMLS:C1515087|EHDAA:7860|FMA:87656 http://upload.wikimedia.org/wikipedia/commons/1/1d/Ectoderm.png merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube) uberon owl:Class (or external ectoderm) forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis UBERON:0000085 biolink:NamedThing morula A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum. monarch-merged.owl morula (2-16 cells) EHDAA2:0000005|GAID:1295|UMLS:C0026573|NCIT:C34212|MESH:A16.254.270.550|BTO:0001508|Wikipedia:Morula|FMA:292334|SCTID:361474003 http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png uberon owl:Class EHDAA2 has embryo starting later UBERON:0000086 biolink:NamedThing zona pellucida A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes. monarch-merged.owl zona pellucida - vitelline membrane|vitelline membrane|pellucid zone|zona striata|vitelline envelope|oolemma|striated membrane|zona radiata MESH:D015044|NCIT:C33896|MA:0001715|UMLS:C0043519|GAID:410|Wikipedia:Zona_pellucida|EHDAA2:0002220|BTO:0003135|VHOG:0000720|EHDAA:62|ZFA:0001111|EMAPA:16035|EHDAA:31|FMA:18674|TAO:0001111 http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png uberon owl:Class Outside the plasma membrane, three envelopes surround the ovum. The first, the primary egg envelope, lies between the plasma membrane and the surrounding cells of the ovary. The most consistent component of this primary layer is the vitelline membrane, a transparent jacket of fibrous protein. In mammals, the homologous structure is called the zona pellucida.[well established][VHOG] UBERON:0000087 biolink:NamedThing inner cell mass A mass of cells that develop into the body of the embryo and some extraembryonic tissues.|A mass of cells that develop into the body of the embryo and some extraembryonic tissues monarch-merged.owl embryoblastus; massa cellularis interna; pluriblastus senior|embryoblast|pluriblast|early embryoblast|ICM UMLS:C1283994|EFO:0000547|VHOG:0000742|Wikipedia:Inner_cell_mass|EHDAA:40|NCIT:C13740|EMAPA:16041|FMA:86557|EHDAA2:0000830|SCTID:361456007 Blastocyst:English.svg uberon owl:Class A group of cells found in the mammalian blastocyst that give rise to the embryo. [Biology_Online][VHOG] A small sphere of cells known as the inner cell mass lies within the trophoblast (of all eutherian mammals).[well established][VHOG] This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred.The ICM lies within the blastocyst cavity and is entirely surrounded by the single layer of cells called trophoblast. [Wikipedia:Inner_cell_mass] UBERON:0000088 biolink:NamedThing trophoblast the mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta|The mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta. monarch-merged.owl massa cellularis externa|trophoderm|trophoblastus|trophoblast layer SCTID:362839005|MESH:A11.936|UMLS:C0041178|EV:0100120|Wikipedia:Trophoblast|NCIT:C93292|CALOHA:TS-1070|FMA:83029|GAID:1152|BTO:0001079 Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg. [Wikipedia:Trophoblast] Blastocyst:English.svg uberon owl:Class the mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta[MP] trophoblastic The postimplantation derivatives of the trophectoderm, which make up most of the fetal part of the placenta UBERON:0000089 biolink:NamedThing hypoblast (generic) . monarch-merged.owl endomesoderm|hypoblast|hypoblastus|future endoderm and mesoderm|mesendoderm FMA:293873|TAO:0000117|EMAPA:32762|Wikipedia:Hypoblast|MAT:0000418|AAO:0000229|VHOG:0001222|EFO:0001930|UMLS:C1512561|AAO:0010619|XAO:0003044|MIAA:0000418|BTO:0003953|ZFA:0000117|NCIT:C34190 this term groups together disparate structures with different relationships. http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png TODO - consider relationship to UBERON:0000091 ! bilaminar disc uberon https://github.com/obophenotype/uberon/issues/437 owl:Class The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995.[TAO]|A primary germ layer that can give rise to both mesoderm and endoderm.[AAO] In mammal and avian, extraembryonic endoderm such as visceral endoderm and hypoblast play essential roles in the embryonic axis formation and germ layer development. These extraembryonic tissues are generally considered to have been created in ancestral amniotes evolved from the Xenopus-type ancestor (reference 1); The endomesoderm secretes as yet unidentified signals that posteriorize the ectoderm, which would otherwise adopt an anterior fate. Our results point to a conserved function at the base of deuterostomes for beta-catenin in germ layer specification and to a causal link in the definition of the posterior part of the embryonic ectoderm by way of activating posteriorizing endomesodermal factors (reference 2).[well established][VHOG] UBERON:0000091 biolink:NamedThing bilaminar disc A flattened, almost circular bilaminar plate of cells formed when the inner cell mass (aka embryoblast) forms two epithelial layers, each of a distinct lineage, separated by an extracellular basement membrane: the external (dorsal) layer is called the epiblast and the internal (ventral) layer is called the hypoblast (aka primitive endoderm); together, they compose the bilaminar embryonic disc. monarch-merged.owl germinal disc|embryonic disc|embryonic shield|bilaminary embryonic disc|bilaminary germ disc|germinal disk|bilaminar disk FMA:293863|NCIT:C34112|Wikipedia:Bilaminar_disc|UMLS:C1283997 http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png uberon owl:Class UBERON:0000100 biolink:NamedThing blastopore The orifice of invagination of the endomesodermal cells during the embryonic stages of an organism. monarch-merged.owl AAO:0000045|Wikipedia:Blastopore|XAO:0000208|BTO:0001695 uberon https://github.com/obophenotype/uberon/issues/660 owl:Class A slit-like invagination on the dorsal side of the blastula surface of the embryo where the mesoderm and endoderm move inside the embryo at gatrulation.[AAO] In protostome development, the first opening in development, the blastopore, becomes the animal's mouth; In deuterostome development, the blastopore becomes the animal's anus UBERON:0000102 biolink:NamedThing lung vasculature The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]. monarch-merged.owl lung vascular network|vascular network of lung|pulmonary vasculature|vasculature of lung FMA:73750 uberon owl:Class UBERON:0000120 biolink:NamedThing blood brain barrier Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions. monarch-merged.owl blood-brain barrier|BBB Wikipedia:Blood-brain_barrier|http://uri.neuinfo.org/nif/nifstd/nlx_subcell_100205|NCIT:C13194|UMLS:C0005854 uberon owl:Class UBERON:0000121 biolink:NamedThing perineurium A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition)|A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition). monarch-merged.owl BTO:0003153|Wikipedia:Perineurium|SCTID:362299001|NLXANAT:090205|NCIT:C33302|FMA:52585|NCIT:C41407|UMLS:C0205890|EMAPA:37849 http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png uberon owl:Class Connective tissue surrounding a fascicle[Wikipedia:Perineurium]. perineurial consider FBbt:00007090 (perineurium): The outer two layers of glial cells that cover the central nervous system and the nerves. The outer layer is the perineurial sheath (sometimes referred to as the perineurial sheath outer layer); the inner layer is the sub-perineural glial sheath (sometimes referred to as the perineurial sheath inner layer) UBERON:0000122 biolink:NamedThing neuron projection bundle A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses. monarch-merged.owl neural fiber bundle|nerve fiber bundle|funiculus FBbt:00005099|NLX:147821|CARO:0001001 UBERON:0005163 uberon owl:Class UBERON:0000123 biolink:NamedThing endoneurium The loose connective tissue within the perineurium that continues into nerve fascicles and surrounds individual fibers. (Nolte, J. The Human Brain 3rd edition). monarch-merged.owl Wikipedia:Endodeurium|SCTID:15931004|FMA:52586|EMAPA:37847|UMLS:C0205888|NLXANAT:090202|NCIT:C32518 uberon owl:Class a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus[Wikipedia:Endodeurium]. UBERON:0000124 biolink:NamedThing epineurium A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition|A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition. monarch-merged.owl FMA:12234|UMLS:C0205889|NCIT:C32528|Wikipedia:Epineurium|SCTID:64482002|NLXANAT:090203|BTO:0003154|EMAPA:37848 http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png uberon owl:Class outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues[Wikipedia:Epineurium]. UBERON:0000127 biolink:NamedThing facial nucleus the group of motor neurons residing in the pons that innervate the muscles of facial expression|The group of motor neurons residing in the pons that innervate the muscles of facial expression. monarch-merged.owl facial VII nucleus|facial VII motor nucleus|nucleus of facial nerve|facial nerve nucleus UMLS:C0228740|BAMS:7N|MA:0001014|VHOG:0001412|BAMS:VII|DHBA:12420|EV:0100267|BAMS:7|EHDAA2:0004638|FMA:54572|NCIT:C12898|SCTID:280166009|BM:Pons-VII|EMAPA:35338 uberon owl:Class FMA has 3 subclasses - left, right and motor nucleus of facial nerve, but no defs. It's not clear how facial nucleus is distinct from facial motor nucleus. UBERON:0000162 biolink:NamedThing cloaca Common chamber into which the intestines and excretory system opens. Arises during development in all vertebrates, but in many it becomes subdivided, lost or incorporated into other structures|Common chamber into which the intestines and excretory system opens. Arises during development in all vertebrates, but in many it becomes subdivided, lost or incorporated into other structures. monarch-merged.owl cloacal chamber|vent XAO:0000244|GAID:1206|SCTID:370631000|UMLS:C0008987|VHOG:0001186|ZFA:0005781|Wikipedia:Cloaca|SCTID:362857006|NCIT:C34127|MESH:D002988|AAO:0000095 adding df link to embryonic cloaca leads to a cycle in uberon-simple, as cloaca is a suberclass of embryonic cloaca uberon owl:Class A common passage for fecal, urinary, and reproductive discharge in most lower vertebrates as well as the terminal end of the hindgut before division into rectum, bladder, and genital primordia in mammalian embryos. [TFD][VHOG]|Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO] A cloaca is apparently a primitive vertebrate feature because it occurs in most primitive gnathostomes and persists in the embryos of almost all vertebrates.[well established][VHOG] cloacal Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs hindgut endoderm and proctodeal ectoderm. UBERON:0000164 biolink:NamedThing primitive urogenital sinus The ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females.|the ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females monarch-merged.owl urogenital sinus|UGS|sinus urogenitalis|fetal UGS EHDAA:5919|EHDAA2:0004060|VHOG:0000414|UMLS:C0231057|SCTID:50961009|EMAPA:17379|EHDAA:5029|Wikipedia:Definitive_urogenital_sinus|NCIT:C34322 http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png uberon owl:Class The ventral part of the cloaca after its separation from the rectum, giving rise to the lower part of the bladder in both sexes, to the prostatic portion of the male urethra, and to the urethra and vestibule in the female. [TFD][VHOG] In mammals the lowly monotremes still have a cloaca. Higher types have done away with this structure and have a separate anal outlet for the rectum. The monotreme cloaca shows the initiation of this subdivision. The cloaca has such includes only the distal part, roughly comparable to the proctodeum. The more proximal part is divided into (1) a large dorsal passage into which the intestine opens, the coprodeum, and (2) a ventral portion, the urodeum with which the bladder connects. (...) the development of the placental mammals recapitulates in many respects the phylogenetic story. In the sexually indifferent stage of placental mammal there is a cloaca. While the indifferent stage still persists, a septum develops, and extends out to the closing membrane. This divides the cloaca into two chambers: a coprodeum continuous with the gut above, and a urodeum or urogenital sinus below.[well established][VHOG] the term 'urogenital sinus' may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal UBERON:0000165 biolink:NamedThing mouth The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks). monarch-merged.owl oral vestibule|trophic apparatus|rima oris|oral region|regio oralis|cavum oris|adult mouth|vestibule of mouth|stoma|cavital oralis|vestibulum oris|cavitas oris|mouth cavity|stomatodaeum EFO:0000825|FMA:49184|EHDAA2:0001326|MA:0000341|SCTID:21082005|EHDAA:542|MAT:0000038|http://purl.obolibrary.org/obo/uberon/images/lamprey_sucker_rosava_3238889218.jpg|OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA|FBbt:00003126|VHOG:0000812|XAO:0003029|ZFA:0000590|Wikipedia:Mouth|BTO:0004698|ZFA:0000547|MESH:D009055|BTO:0001090|TADS:0000040|TAO:0000590|MA:0002474|VHOG:0000280|GAID:75|CALOHA:TS-1315|MIAA:0000038|EMAPA:16262|galen:Mouth|TGMA:0000131|TAO:0000547|AAO:0010355 http://upload.wikimedia.org/wikipedia/commons/0/06/Mouth_illustration-Otis_Archives.jpg uberon https://github.com/obophenotype/uberon/issues/661 owl:Class Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO] Molecular and developmental cell lineage data suggest that the acoel mouth opening is homologous to the mouth of protostomes and deuterostomes and that the last common ancestor of the Bilateria (the 'urbilaterian') had only this single digestive opening.[well established][VHOG] oral some AOs place this as developing from the stomodeum but we weaken this to developmental contribution, as the mouth includes non-ectodermal derivatives in FMA, the tongue, palate etc are part of the mouth which is itself a subdivision of the face. ZFA includes a separate class 'oral region' which is part of the mouth, but excludes tongue and lips UBERON:0000166 biolink:NamedThing oral opening The orifice that connects the mouth to the exterior of the body. monarch-merged.owl mouth|oral part of face|oral fissure|oral orifice FMA:59806 uberon owl:Class (...) mouth development is very similar in protostomes and 'basal' deuterostomes, whereas the chordate mouth seems to develop at a new position. Recent data for echinoderms and hemichordates further suggest that this change in mouth position may result from change in the influence of a conserved ectodermal patterning system on mouth development. It has been suggested that the mouths of vertebrates and urochordates may constitute a 'new' mouth.[well established][VHOG] UBERON:0000167 biolink:NamedThing oral cavity Anatomical cavity at the start of the digestive tract that that is enclosed by the mouth. The boundaries and contents vary depending on the species. In vertebrates, the boundaries are the oral opening, the cheeks, the palate and (if present) the palatoglossal arch - if this is not present then the mouth and pharynx form the oropharyngeal cavity. The buccal cavity contains the teeth, tongue and palate (when present)|Anatomical cavity at the start of the digestive tract that that is enclosed by the mouth. The boundaries and contents vary depending on the species. In vertebrates, the boundaries are the oral opening, the cheeks, the palate and (if present) the palatoglossal arch - if this is not present then the mouth and pharynx form the oropharyngeal cavity. The buccal cavity contains the teeth, tongue and palate (when present). monarch-merged.owl bucca|cavity of mouth|buccal cavity VHOG:0000188|XAO:0000126|BSA:0000107|EMAPA:17411|FMA:20292|EMAPA:18399|EV:0100057|UMLS:C0226896|EFO:0001975|CALOHA:TS-1315|WBbt:0005255|EHDAA:6970|NCIT:C12421|AAO:0000053|AAO:0000960|HAO:0000669|ZFA:0001027|TAO:0001027|SCTID:181220002|EHDAA2:0001324|TGMA:0000102 uberon owl:Class The cavity of the mouth, bounded by the jaw bones and associated structures (muscles and mucosa). [TFD][VHOG]|Anatomical cavity bounded anteriorly by the mouth and posteriorly by the derivatives of the branchial arches.[AAO] Echinoderms, hemichordates, and chordates are called deuterostomes because the mouth arises not from the blastopore but from a second invagination at the anterior end of the larva that pushes in to connect with the archenteron.[well established][VHOG] UBERON:0000170 biolink:NamedThing pair of lungs The pair of anatomical structures comprised of a left lung and right lung. monarch-merged.owl set of lungs|lungs pair|pulmones|lungs OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA|FMA:68877 uberon owl:Class UBERON:0000178 biolink:NamedThing blood A fluid that is composed of blood plasma and erythrocytes. monarch-merged.owl portion of blood|whole blood|vertebrate blood AAO:0000046|VHOG:0000224|UMLS:C0005767|TAO:0000007|Wikipedia:Blood|BTO:0000089|ENVO:02000027|EHDAA:418|NCIT:C12434|EV:0100047|FMA:9670|GAID:965|XAO:0000124|EHDAA2:0000176|MA:0000059|EFO:0000296|MIAA:0000315|CALOHA:TS-0079|ZFA:0000007|OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA|MESH:D001769|EMAPA:16332|galen:Blood This class excludes blood analogues, such as the insect analog of blood. See UBERON:0000179 haemolymphatic fluid. uberon owl:Class Highly specialized circulating tissue consisting of several types of cells suspended in a fluid medium known as plasma.[AAO]|A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. (Source: BioGlossary, www.Biology-Text.com)[TAO] relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO] Recent findings strongly suggest that the molecular pathways involved in the development and function of blood cells are highly conserved among vertebrates and various invertebrates phyla. (...) There is now good reason to believe that, in vertebrates and invertebrates alike, blood cell lineages diverge from a common type of progenitor cell, the hemocytoblast.[well established][VHOG] UBERON:0000220 biolink:NamedThing atlanto-occipital joint The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital.|The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital monarch-merged.owl occipito-atlantal joint|articulatio atlantooccipitalis|atlanto occipital joint|craniovertebral joint|atlantooccipital joint|occipito atlantal joint|articulatio atlanto-occipitalis Wikipedia:Atlanto-occipital_joint|FMA:24939|UMLS:C0004169|ncithesaurus:Atlanto-occipital_Joint-Atlanto|SCTID:361831006|NCIT:C32158 http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png uberon owl:Class UBERON:0000221 biolink:NamedThing supraauricular point A craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point. monarch-merged.owl supra-auricular part of head FMA:224222 uberon owl:Class UBERON:0000304 biolink:NamedThing tendon sheath A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath|A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath. monarch-merged.owl synovial tendon sheath|vagina tendinis SCTID:361885006|Wikipedia:Tendon_sheath|UMLS:C0224856|FMA:45087|NCIT:C96299|FMA:76715|BTO:0000051 TODO - add layer relations. 'tendon sheath' GAT in FMA. uberon owl:Class UBERON:0000307 biolink:NamedThing blastula Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence. monarch-merged.owl blastosphere|blastula embryo GAID:1294|BILA:0000059|Wikipedia:Blastula|BTO:0000128|MESH:A16.254.270.274|OGEM:000006|OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula UBERON:0007011 uberon owl:Class UBERON:0000312 biolink:NamedThing inner cambium layer of periosteum monarch-merged.owl cambium layer of periosteum|osteogenic layer of periosteum|internal periosteum|internal layer of periosteum|cambial layer of periosteum|cambial layer|cambium|inner cambial layer of periosteum FMA:234358 uberon owl:Class UBERON:0000315 biolink:NamedThing subarachnoid space The space between the arachnoid and pia mater. monarch-merged.owl spatium subarachnoideum|cavum subarachnoideale|subarachnoid cavity|cavitas subarachnoidea|spatium leptomeningeum Wikipedia:Subarachnoid_space|MESH:D013346|SCTID:362311001|FMA:83716|EMAPA:32666|BTO:0000230|GAID:689 http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg|http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray769.png uberon owl:Class UBERON:0000319 biolink:NamedThing cytotrophoblast The inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]. monarch-merged.owl Langhans' layer|cellular trophoblast|cytotrophoblastus|cytotrophoblastic cell layer|cytotrophoblastic cell|layer of Langhans FMA:83039|VHOG:0000683|EMAPA:16067|UMLS:C0230960|EHDAA:152|EHDAA:127|Wikipedia:Cytotrophoblast|EHDAA:89|SCTID:308841008|NCIT:C33919|BTO:0000322 http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png todo - unify with EHDAA2, which distinguishes multiple types of cytotrophoblast uberon owl:Class A derivative layer of the trophoblast, the cells of which retain their boundaries and contribute to the extraembryonic mesoderm [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.189, see_Kardong_KV][VHOG] UBERON:0000328 biolink:NamedThing gut wall The wall of the digestive tract. This encompasses all parts of the digestive tract with the exception of the lumen (cavity). monarch-merged.owl wall of digestive tract|wall of alimentary tract|wall of gut|digestive tract wall FMA:45653|BTO:0000547 We model the digestive tract as consisting of two parts: the wall and the lumen. uberon owl:Class UBERON:0000345 biolink:NamedThing myelin A dielectric (electrically insulating) material consisting of protein and fat that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath. monarch-merged.owl ncithesaurus:Myelin|BTO:0000894|FMA:62977|Wikipedia:Myelin cede to other ontology. Retired in ncit uberon owl:Class UBERON:0000347 biolink:NamedThing entire myelin sheath The insulating envelope that surrounds nerve fibers or axons. monarch-merged.owl medullary sheath CALOHA:TS-2363|MESH:D009186|FMA:62983|NCIT:C13261|BTO:0000900|GO:0043209|UMLS:C0026973|GAID:731 do not cede to GO until GO includes has_part link to myelin uberon owl:Class UBERON:0000355 biolink:NamedThing pharyngeal mucosa A mucosa that is part of a pharynx [Automatically generated definition]. monarch-merged.owl mucosa of pharynx|mucosa of organ of pharynx|pharynx mucous membrane|tunica mucosa pharyngea|mucous membrane of the pharynx|organ mucosa of pharynx|pharynx organ mucosa|tunica mucosa pharyngis|pharynx mucosa of organ|pharynx mucosa|mucous membrane of pharynx BTO:0001047|MA:0003143|SCTID:362121003|FMA:55031|EMAPA:26957 UBERON:0003344 uberon owl:Class UBERON:0000358 biolink:NamedThing blastocyst The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]. monarch-merged.owl blastula|blastocystis SCTID:308837009|MESH:A16.254.085|CALOHA:TS-0076|NCIT:C13739|EMAPA:36035|EFO:0000295|FMA:83041|EV:0100394|GAID:1153|UMLS:C1281743|BTO:0001099|Wikipedia:Blastocyst Blastocyst:English.svg Gilbert fig11.32 has blastocyst has giving rise to ICM and trophoblast (which in this source is a synonym for trophectoderm) uberon owl:Class UBERON:0000362 biolink:NamedThing renal medulla the inner portion of the kidney consisting of the renal pyramids|The inner portion of the kidney consisting of the renal pyramids. monarch-merged.owl pyramides renales|renal medullae|renal pyramids set|kidney medulla|medullary pyramids|renal medullae set|medulla of kidney|renal pyramids|medulla renalis|renal marrow GAID:425|NCIT:C12740|Wikipedia:Renal_medulla|MESH:D007679|SCTID:30737000|MA:0000373|UMLS:C0022664|EMAPA:19279|CALOHA:TS-1157|galen:MedullaOfKidney|BTO:0001167 Illu:kidney.jpg uberon owl:Class The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water UBERON:0000371 biolink:NamedThing syncytiotrophoblast Extraembryonic cells of trophoblastic shell surrounding embryo, outside the cytotrophoblast layer, involved with implantation of the blastocyst by eroding extracellular matrix surrounding maternal endometrial cells at site of implantation, also contribute to villi. (dark staining, multinucleated). monarch-merged.owl syncitiotrophoblastus|syncitiotrophoblast|syntrophoblast layer|syncytial trophoblast|syntrophoblast EHDAA:91|BTO:0001335|FMA:83040|EHDAA:129|EMAPA:16068|NCIT:C33918|UMLS:C1135936|Wikipedia:Syncytiotrophoblast|SCTID:256965005 http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png uberon owl:Class UBERON:0000383 biolink:NamedThing musculature of body The subdivision of the musculoskeletal system that consists of all the muscles of the body[VSAO, modified]. monarch-merged.owl set of all muscles|vertebrate muscular system|muscular system|muscle system of body|set of muscles of body|muskelsystem|musculature system|muscle system FBbt:00005069|XAO:0004042|VSAO:0000033|BILA:0000088|MA:0002888|MAT:0000025|AAO:0000307|EFO:0000801|BTO:0001369|MIAA:0000025|EMAPA:35578|BTO:0001485|FMA:72954 consider whether this should be restricted to skeletal musculature. See https://github.com/obophenotype/uberon/issues/77 uberon owl:Class Anatomical system that consists of the muscles of the body.[VSAO] we place the MA term musculature here, rather than under uberon:musculature, as this seems more appropriate given the structure of MA UBERON:0000387 biolink:NamedThing meniscus Crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint. monarch-merged.owl articular disc NCIT:C33096|FMA:76690|EV:0100145|Wikipedia:Meniscus_(anatomy)|UMLS:C0224498|galen:Meniscus|BTO:0001592 uberon owl:Class UBERON:0000402 biolink:NamedThing nasal vestibule The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]. monarch-merged.owl vestibulum nasale|vestibulum nasi|vestibular part of nasal cavity SCTID:278940000|BTO:0001761|FMA:59644|CALOHA:TS-0660|Wikipedia:Nasal_vestibule http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png uberon owl:Class UBERON:0000403 biolink:NamedThing scalp The outer covering of the calvaria. It is composed of several layers: SKIN; subcutaneous connective tissue; the occipitofrontal muscle which includes the tendonous galea aponeurotica; Loose connective tissue; and the pericranium (the PERIOSTEUM of the SKULL). monarch-merged.owl scalpus GAID:80|MESH:D012535|FMA:46494|CALOHA:TS-0896|galen:Scalp|SCTID:181480002|OpenCyc:Mx4rwNtaz5wpEbGdrcN5Y29ycA|UMLS:C0036270|BTO:0001809|NCIT:C89807|EMAPA:37949|Wikipedia:Scalp http://upload.wikimedia.org/wikipedia/commons/5/55/Layers_of_the_scalp_and_meninges.png|Double:cowlick.jpg uberon owl:Class UBERON:0000407 biolink:NamedThing sympathetic trunk One of a a paired bundle of nerve fibers plus ganglia that run from the base of the skull to the coccyx. monarch-merged.owl truncus sympathicus|sympathetic chain|gangliated cord|sympathetic ganglionic chain EV:0100374|Wikipedia:Sympathetic_trunk|AAO:0010791|SCTID:181099004|XAO:0000211|FMA:6258|BTO:0001834|CALOHA:TS-2049|BAMS:S http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png uberon owl:Class UBERON:0000416 biolink:NamedThing subdural space A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid. monarch-merged.owl subdural cavity|cavum subdurale|subdural cleft|subdural cleavage|spatium subdurale GAID:692|BTO:0002082|SCTID:362308002|FMA:83803|MESH:D013355|Wikipedia:Subdural_space http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg consider obsoleting - see PMID:8421539 uberon owl:Class UBERON:0000420 biolink:NamedThing myoepithelium An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]. monarch-merged.owl myo-epithelium|myoepitheliocytus Wikipedia:Myoepithelial_cell|BTO:0002308|FMA:67805 uberon owl:Class UBERON:0000424 biolink:NamedThing gastric pit Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits. monarch-merged.owl foveolae gastricae|foveola gastrica|gastric foveola NCIT:C32659|UMLS:C0227203|BTO:0002364|SCTID:268426007|Wikipedia:Gastric_pits|FMA:62947 http://upload.wikimedia.org/wikipedia/commons/7/73/Illu_stomach_layers.jpg UBERON:0000425 uberon owl:Class UBERON:0000426 biolink:NamedThing extravillous trophoblast The outermost layer of trophoblast, produced by cytotrophoblast where there is direct contact with maternal decidua rather than blood. The EVT cells travel into the decidua, reacting with NK cells and invading maternal blood vessels feeding the placenta, softening the walls and replacing the lining with fetal tissue, a process called conversion. monarch-merged.owl interstitial trophoblast|intermediate trophoblast FMA:86561|BTO:0002366 uberon owl:Class UBERON:0000458 biolink:NamedThing endocervix The region of the opening of the uterine cervix into the uterine cavity. monarch-merged.owl FMA:86485|BTO:0003002|SCTID:264460007|NCIT:C12309|UMLS:C0227837 uberon owl:Class UBERON:0000459 biolink:NamedThing uterine wall An anatomical wall that is part of a uterus [Automatically generated definition]. monarch-merged.owl anatomical wall of uterus|uterus wall|wall of uterus|uterus anatomical wall FMA:17560|SCTID:245485002|BTO:0003083 uberon owl:Class UBERON:0000475 biolink:NamedThing organism subdivision Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument. monarch-merged.owl body region|cardinal body part|body part|anatomic region CALOHA:TS-2084|EFO:0000808|ZFA:0001308|TAO:0001308|AEO:0000032|UMLS:C0229962|NCIT:C32221|BIRNLEX:7|galen:BodyPart|MA:0002433|TGMA:0001840|Wikipedia:Body_part|OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA|MESH:D001829|XAO:0003013|BILA:0000032|HAO:0000032|EHDAA2:0003032|CARO:0000032|AAO:0010053|EMAPA:36031|VHOG:0001758|MAT:0000293|FMA:7153|MIAA:0000293|FBbt:00007009 Reflects CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency uberon owl:Class UBERON:0000478 biolink:NamedThing extraembryonic structure A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis. monarch-merged.owl extra-embryonic structure|extraembryonic structures|extraembryonic tissue FBbt:00005835|AEO:0000042|XAO:0004005|ZFA:0000020|EHDAA2:0003042|HAO:0000042|SCTID:314908006|VHOG:0000292|NCIT:C34055|EHDAA:46|BILA:0000042|TGMA:0001843|CARO:0000042|FMA:85537|TAO:0000020|CALOHA:TS-2119|AAO:0010020|UMLS:C1282438 see also conceptus extraembryonic component in EHDAA2. uberon owl:Class UBERON:0000911 biolink:NamedThing chyle Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats. monarch-merged.owl MESH:A12.207.630.350|UMLS:C0008730|FMA:61403|ENVO:02000030|Wikipedia:Chyle|NCIT:C93166|GAID:1187 uberon owl:Class UBERON:0000920 biolink:NamedThing egg chorion A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]. monarch-merged.owl chorion|chorion (egg) ZFA:0000329|TAO:0000329|TGMA:0000681|FBbt:00000038|Wikipedia:Chorion_(egg) uberon owl:Class The egg shell. Kimmel et al, 1995.[TAO] UBERON:0000930 biolink:NamedThing stomodeum Anterior part of the embryonic digestive tract that develops into a mouth. The stomodeum includes as parts an invagination of the ectoderm and the stomodeal cavity. monarch-merged.owl stomodaeum|stomodeal-hypophyseal primordium|mouth primordium|oral pit|primitive oral cavity|oral ectoderm|mouth pit|stomatodeum EHDAA2:0001929|NCIT:C34306|ZFA:0001290|FMA:295846|EMAPA:16263|TGMA:0000135|BTO:0004224|FBbt:00000439|TAO:0001290|UMLS:C1514977|XAO:0000269|Wikipedia:Stomodeum http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence uberon owl:Class the primordial mouth region of the developing head, initially a midline ectodermal depression between the forebrain bulge (cranially) and the heart bulge (caudally) and between the maxillary and mandibular components of the first pharyngeal arch; the stomodeum is separated from the anterior end of the foregut by the buccopharyngeal membrane; the mouth is developed partly from the stomodeum, and partly from the floor of the anterior portion of the foregut; the lips, teeth, and gums are formed from the walls of the stomodeum, but the tongue is developed in the floor of the pharynx|Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO] stomodeal This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity. UBERON:0000931 biolink:NamedThing proctodeum Inward fold on the surface of the embryonic ectoderm that develops into an ectodermal terminal part of the digestive tract. monarch-merged.owl proctodaeum|amnioproctodeal invagination|anus porus|anal pit|embryonic proctodaeum ZFA:0000066|VHOG:0000139|FBbt:00000123|TAO:0000066|AAO:0011087|UMLS:C0231054|EHDAA2:0000121|Wikipedia:Proctodeum|XAO:0001019|EMAPA:25038|NCIT:C34278 removed WBbt:0006795 'proctodeum' - junction between the alimentary and genital tracts in the male. uberon https://github.com/obophenotype/uberon/issues/685 owl:Class Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[AAO]|An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[TAO] proctodeal UBERON:0000955 biolink:NamedThing brain The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]. monarch-merged.owl synganglion|suprasegmental structures|encephalon|suprasegmental levels of nervous system|the brain BIRNLEX:796|MBA:8|galen:Brain|CALOHA:TS-0095|MESH:D001921|ABA:Brain|VHOG:0000157|MA:0000168|GAID:571|EHDAA2:0000183|HBA:4005|BAMS:Br|EMAPA:16894|EFO:0000302|SCTID:258335003|ZFA:0000008|EHDAA:2641|BAMS:Brain|TAO:0000008|AAO:0010478|PBA:3999|DHBA:10155|EHDAA:6485|BILA:0000135|MIAA:0000098|NCIT:C12439|UMLS:C0006104|Wikipedia:Brain|XAO:0000010|MAT:0000098|BTO:0000142|OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA|UMLS:C1269537|MBA:997|FBbt:00005095|EV:0100164|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=21|FMA:50801 requires review for applicability to invertebrate structures, e.g. synganglion uberon owl:Class The part of the central nervous system contained within the cranium, comprising the forebrain, midbrain, hindbrain, and metencephalon. It is derived from the anterior part of the embryonic neural tube (or the encephalon). Does not include retina. (CUMBO)|Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.[TAO]|Part of the central nervous system situated within the cranium and composed of both nerve cell bodies and nerve fibers.[AAO] (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG] UBERON:0000956 biolink:NamedThing cerebral cortex The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex. monarch-merged.owl brain cortex|cortical plate (CTXpl)|cortical plate (areas)|pallium of the brain|cortex cerebri|cortex cerebralis|cortex of cerebral hemisphere BAMS:CTX|Wikipedia:Cerebral_cortex|EMAPA:17544|DHBA:10159|BAMS:Cx|FMA:61830|PBA:128011354|MA:0000185|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=39|MESH:A08.186.211.730.885.213|VHOG:0000722|EFO:0000328|MBA:688|BAMS:Cerebral_cortex|MIAA:0000108|EHDAA:5464|NCIT:C12443|HBA:4008|BIRNLEX:1494|GAID:629|UMLS:C0007776|EV:0100166|SCTID:362880003|BTO:0000233|MAT:0000108|BAMS:C|CALOHA:TS-0091|BM:Tel-Cx|EHDAA2:0000234 We follow NIFSTD in defining cerebral cortex and including both neocortex and hippocampal formation (DG+hippocampus). http://upload.wikimedia.org/wikipedia/commons/7/7b/Cerebral_Cortex_location.jpg|http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg uberon owl:Class The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2-4 mm (0.08-0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted][Wikipedia:Cerebral_cortex]. Migration of neurons from the basal or striatal portions of the anterior part of the neural tube occurs to varying degrees in different vertebrate classes, but a true cerebral cortex is generally acknowledged to have made its first appearance in reptiles. The definition can be unambiguous, since 'cortex' simply implies the existence of a surface neuronal layer with an overlying 'zonal lamina' or 'molecular' layer containing dendrites and axons, which is separated from the underlying basal 'matrix' by white matter. Although reptilian cerebral cortex does indeed fulfill these conditions in certain locations, the separation from striatal structures is often indistinct, so that it may even be argued that some primitive dipnoans possess a pallium or cortex. Nevertheless, an extensive laminated layer separated by underlying white matter is well represented only in reptiles and mammals.[well established][VHOG] hagfishes have independently evolved a highly laminated cerebral cortex, comparable in many ways to the cerebral cortex of mammals [http://icb.oxfordjournals.org/content/42/4/743] UBERON:0000970 biolink:NamedThing eye An organ that detects light. monarch-merged.owl visual apparatus|light-detecting organ GAID:69|EFO:0000827|OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA|MIAA:0000140|BTO:0000439|EV:0100336|Wikipedia:Eye|FBbt:00005162|BILA:0000017|MESH:D005123|MAT:0000140|CALOHA:TS-0309 This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each) uberon owl:Class ocular|optic Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva, UBERON:0000975 biolink:NamedThing sternum A midventral endochondral skeletal element which represents the origin site of the pectoral muscles[PHENOSCAPE:ad]. monarch-merged.owl breastbone|vertebrate sternum EHDAA2:0001914|MA:0001331|VHOG:0000856|OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA|NCIT:C12793|galen:Sternum|EHDAA:9561|MESH:D013249|Wikipedia:Sternum|CALOHA:TS-0972|UMLS:C0038293|BTO:0001302|SCTID:302522007|EMAPA:18344|AAO:0000765|FMA:7485|GAID:246 http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg in EMAPA and EHDAA2 this is part of the skeleton of pectoral girdle; the classic def of pectoral girdle (see WP) excludes the rib cage and sternum uberon owl:Class Single element that constitutes the postzonal area of the pectoral girdle.[AAO] relationship loss: part_of postzonal element (AAO:0000938)[AAO] Fishes lack a sternum. (...) A sternum is absent in the first fossil tetrapods, but it is present in modern amphibians. (...) Thus, a sternum occurs in some modern amphibians, birds, mammals and archosaurs. However, its absence in the common ancestors to these groups means that it has arisen independently several times within the field of the midventral connective tissue.[well established][VHOG] sternal It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life|in birds, either ratite (no keel or carina) or carinate (keel and carina present) While its developmental origins are similar to the ribs (from the myospetum and septum of the trunk region), it is often associated with the pectoral skeleton, due to both function and physical connections (i.e. the coracoid of archosaurs). It may be a single element or a series of smaller structure (sternebrae). Based on Kardong 2012. [PHENOSCAPE:ad]. UBERON:0000990 biolink:NamedThing reproductive system Anatomical system that has as its parts the organs concerned with reproduction. monarch-merged.owl systemata genitalia|genitalia|genital tract|reproductive tract|genital system|Geschlechtsorgan|animal reproductive system|organa genitalia|reproductive tissue HAO:0000374|AAO:0010258|BTO:0000081|CALOHA:TS-1318|FBbt:00004857|EHDAA:5923|OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA|ZFA:0000632|MA:0000326|GAID:363|UMLS:C1261210|EV:0100100|FMA:7160|XAO:0000142|TAO:0000632|EMAPA:17381|HAO:0000895|EHDAA2:0001603|EFO:0000809|MIAA:0000305|NCIT:C12841|WBbt:0005747|VHOG:0000182|Wikipedia:Reproductive_system|BILA:0000103|SCTID:278875001 http://upload.wikimedia.org/wikipedia/commons/5/52/Penis.svg consider splitting genitalia from reproductive system uberon owl:Class Anatomical system which consists of organs and tissues associated with sexual reproduction of the organism.[AAO] Arguably, one of the most important aspects of urbilaterian organogenesis would have been gonadogenesis, since Urbilateria must have successfully generated gametes and developed a strategy for extrusion and fertilization, in order to be the ancestor of all living Bilateria.[well established][VHOG] UBERON:0000991 biolink:NamedThing gonad Reproductive organ that produces and releases eggs (ovary) or sperm (testis). monarch-merged.owl gonads|gonada AAO:0000213|XAO:0003146|EMAPA:17383|ZFA:0000413|BTO:0000534|WBbt:0005175|BSA:0000079|MESH:D006066|FMA:18250|BILA:0000123|OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA|VHOG:0000397|HAO:0000379|Wikipedia:Gonad|UMLS:C0018067|FBbt:00004858|MA:0002420|SCTID:304623008|NCIT:C12725|TAO:0000413|GAID:368 uberon owl:Class The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).[TAO]|Anatomical structure which produces gametes as well as certain sex hormones controlled by the pituitary gonadotropins.[AAO] Examination of different vertebrate species shows that the adult gonad is remarkably similar in its morphology across different phylogenetic classes. Surprisingly, however, the cellular and molecular programs employed to create similar organs are not evolutionarily conserved.[uncertain][VHOG] gonadal FMA xref is a 'general anatomical term' UBERON:0000994 biolink:NamedThing spermathecum An organ of the female reproductive tract that functions to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready. monarch-merged.owl seminal receptacle|spermathecae|spermatheca|receptaculum seminis BTO:0001273|WBbt:0005319|EFO:0000977|MIAA:0000168|Wikipedia:Spermatheca|FBbt:00004921|TGMA:0000560|HAO:0000945|MAT:0000168 uberon owl:Class Some species have multiple spermathecae, as seen in earthworms, where four pairs of spermathecae are present. One pair in 6,7,8 and 9 segments. They receive and store the spermatozoa of another earthworm during copulation UBERON:0000995 biolink:NamedThing uterus The female muscular organ of gestation in which the developing embryo or fetus is nourished until birth.|the female muscular organ of gestation in which the developing embryo or fetus is nourished until birth monarch-merged.owl MAT:0000127|MIAA:0000127|EMAPA:29915|BTO:0001424|CALOHA:TS-1102|UMLS:C0042149|MA:0000389|Wikipedia:Uterus|MESH:D014599|EV:0100113|GAID:172|galen:Uterus|FMA:17558|SCTID:181452004|OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA|VHOG:0001137|EFO:0000975|NCIT:C12405 Female:anatomy.png|http://upload.wikimedia.org/wikipedia/commons/6/6a/Female_reproductive_system_lateral_nolabel.png uberon owl:Class The hollow muscular organ in female mammals in which the blastocyst normally becomes embedded and in which the developing embryo and fetus is nourished. Its cavity opens into the vagina below and into a uterine tube on either side. [TFD][VHOG] An infundibulum, uterine tube, uterus, and vagina also differentiate along the oviducts of eutherian mammals.[well established][VHOG] uterine Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle 'vagina' which functions as the birth canal. Marsupial embryos form a choriovitelline 'placenta' (which can be thought of as something between a monotreme egg and a 'true' placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream. Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused [Wikipedia:Uterus] UBERON:0001013 biolink:NamedThing adipose tissue Portion of connective tissue composed of adipocytes enmeshed in areolar tissue.|Portion of connective tissue composed of adipocytes enmeshed in areolar tissue monarch-merged.owl bodyfat|fat|adipose|fatty depot|fatty tissue|fat tissue AAO:0000001|MAT:0000015|CALOHA:TS-0013|AEO:000020|TAO:0002134|UMLS:C0001527|XAO:0003049|EV:0100381|VHOG:0001284|MA:0000009|NCIT:C12472|GAID:920|EFO:0000790|BTO:0001487|OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA|galen:FattyTissue|Wikipedia:Adipose_tissue|MESH:D000273|MIAA:0000015|EHDAA2:0003120|ZFA:0005345|FMA:20110|EMAPA:35112|SCTID:55603005 uberon owl:Class Tissue that contains adipocytes, used for cushioning, thermal insulation, lubrication (primarily in the pericardium) and energy storage.[AAO]|Connective tissue in which fat is stored.[TAO] relationship loss: subclass connective tissue proper (AAO:0000099)[AAO] Adipose tissue is unique to vertebrates. It is found in mostmammals, birds, reptiles and amphibians, and a variety is found in some species of fish. Furthermore, in insects the fat body found in larvae as well as in adults shares some homology with adipose tissue.[well established][VHOG] adipose In humans, adipose tissue is located beneath the skin (subcutaneous fat), around internal organs (visceral fat), in bone marrow (yellow bone marrow) and in breast tissue. Adipose tissue is found in specific locations, which are referred to as adipose depots. Adipose tissue contains several cell types, with the highest percentage of cells being adipocytes, which contain fat droplets. Other cell types include fibroblasts, macrophages, and endothelial cells. Adipose tissue contains many small blood vessels.; Mice have eight major adipose depots, four of which are within the abdominal cavity. The paired gonadal depots are attached to the uterus and ovaries in females and the epididymis and testes in males; the paired retroperitoneal depots are found along the dorsal wall of the abdomen, surrounding the kidney, and, when massive, extend into the pelvis. The mesenteric depot forms a glue-like web that supports the intestines, and the omental depot, which originates near the stomach and spleen, and, when massive, extends into the ventral abdomen. in FMA this is dense irregular connective tissue UBERON:0001015 biolink:NamedThing musculature A subdivision of the muscular system corresponding to a subdisivision of an organism. monarch-merged.owl set of muscles|muscle system|muscles set|musculi|set of skeletal muscles|musculature|musculature system|muscle group|muscles AAO:0011066|FMA:32558|TAO:0000548|MA:0000165|Wikipedia:Muscular_system|NCIT:C13056|ZFA:0000548|VSAO:0005038|OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA|BTO:0000887|UMLS:C0026845|WBbt:0005737|EMAPA:35577|EFO:0001949|EMAPA:32715 http://upload.wikimedia.org/wikipedia/commons/e/e5/Muscles_anterior_labeled.png uberon owl:Class In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here. UBERON:0001016 biolink:NamedThing nervous system The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]. monarch-merged.owl nerve net|systema nervosum|neurological system Wikipedia:Nervous_system|FMA:7157|EFO:0000802|EHDAA:826|ZFA:0000396|TAO:0000396|SCTID:278196006|GAID:466|XAO:0000177|UMLS:C0027763|FBbt:00005093|NCIT:C12755|OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3236|BIRNLEX:844|MIAA:0000026|BTO:0001484|WBbt:0005735|MESH:D009420|EMAPA:16469|MA:0000016|MAT:0000026|AAO:0000324|BILA:0000079|CALOHA:TS-1313|VHOG:0000402|EHDAA2:0001246|EV:0100162 http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg|http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png uberon owl:Class Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]|A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO] Nervous systems evolved in the ancestor of Eumetazoa.[well established][VHOG] neural|nervous UBERON:0001031 biolink:NamedThing sheath of Schwann The outermost nucleated cytoplasmic layer of Schwann cells that surrounds the axon of the neuron. It forms the outermost layer of the nerve fiber in the peripheral nervous system. The neurolemma is underlain by the basal lamina (referred to as the medullary sheath in the included illustrations. In CNS, axons are myelinated by oligodendrocytes, thus lack neurolemma. monarch-merged.owl neurilemma|Schwann's membrane|sheath of Schwann|neurolemma|endoneural membrane BTO:0003048|MESH:D009441|FMA:62976|GAID:730|UMLS:C0027807|Wikipedia:Neurilemma|NCIT:C33544 http://upload.wikimedia.org/wikipedia/commons/3/34/Gray631.png uberon owl:Class FMA def is 'Neural tissue which consists of Schwann cells' which does not fit, but we still use 'neural tissue' here. WP def specifically states Schwann cells, which would restrict it to PNS UBERON:0001032 biolink:NamedThing sensory system Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information. monarch-merged.owl sensory organ system|sense organ subsystem|sensory systems|sense organs|organa sensuum|sense organs set|sensory subsystem|set of sense organs MA:0002442|BAMS:SEN|AAO:0000555|Wikipedia:Sensory_system|VHOG:0001674|BILA:0000099|FMA:75259|XAO:0003194|EHDAA2:0003094|EMAPA:16192|MIAA:0000031|ZFA:0000282|TAO:0000282|NLXANAT:090816|MAT:0000031|EFO:0000805|FBbt:00007692 http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png uberon owl:Class An early step in the evolution of neural crest, therefore, may have been the origin of a specific dorsal neural cell population contributing to sensory processing; this would predate the divergence of the amphioxus and vertebrate lineages.[well established][VHOG] note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs UBERON:0001042 biolink:NamedThing chordate pharynx A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]. monarch-merged.owl pharynx XAO:0003227|AAO:0000967|UMLS:C0031354|galen:Pharynx|TAO:0000056|EHDAA:2947|CALOHA:TS-0785|MA:0000432|SCTID:181211006|VHOG:0000462|FMA:46688|OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA|MESH:A03.867|GAID:155|EMAPA:16706|NCIT:C12425|EFO:0000836|BTO:0001049|EV:0100065|ZFA:0000056|EHDAA2:0001458|Wikipedia:Pharynx Consider generalizing to deuterostome pharynx uberon owl:Class Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995.[TAO]|Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA:0000056, ZFIN:ZDB-PUB-961014-576].|Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]|The portion of the alimentary canal between the mouth and the oesophagus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]|A funnel-shaped fibromuscular tube that conducts food to the ESOPHAGUS, and air to the LARYNYX and LUNGS. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH:A03.867]. relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: part_of respiratory system (UBERON:0001004)[AAO]|relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: develops_from respiratory system (UBERON:0001004)[AAO] (...) the earliest vertebrates possessed unjointed internal and external branchial arches, and musculature encircling the pharynx.[well established][VHOG] MA/FMA pharynx not part of digestive/alimentary system, we are consistent with this scheme UBERON:0001051 biolink:NamedThing hypopharynx Bottom part of the pharynx that connects to the esophagus. monarch-merged.owl laryngeal pharynx|laryngopharynx|pars laryngea pharyngis OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA|EFO:0001388|SCTID:281490009|NCIT:C12246|EHDAA2:0004574|GAID:338|VHOG:0000445|FMA:54880|MESH:A03.867.490|Wikipedia:Hypopharynx|UMLS:C0020629|EV:0100068|MA:0001796|BTO:0001740|CALOHA:TS-2020 Illu:pharynx.jpg uberon owl:Class The inferior portion of the pharynx, between the epiglottis and the larynx. [TFD][VHOG] hypopharyngeal UBERON:0001130 biolink:NamedThing vertebral column Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body[modified from VSAO]. monarch-merged.owl vertebral column skeleton|columna vertebralis|vertebral region|backbone|spinal column|dorsal spine|spine AAO:0000734|OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA|MESH:D013131|SCTID:44300000|TAO:0001559|EHDA:10119|Wikipedia:Vertebral_column|AAO:0000699|UMLS:C0037949|ZFA:0001559|OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA|NCIT:C12998|MA:0002416|XAO:0003074|UMLS:C1519455|EFO:0001369|GAID:106|BTO:0000818|VSAO:0000185|NIF_Subcellular:sao1145756102|FMA:13478|EMAPA:35919|VHOG:0001142|galen:SpinalColumn|NCIT:C33588|OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton uberon owl:Class Anatomical cluster that consists of all the vertebra in the body.[VSAO]|The vertebral column consists of a series of vertebrae connected by ligaments. It provides a supporting axis for the body and protects the spinal cord. [TFD][VHOG] Vertebrata is characterized by three synapomorphies. First, vertebrates have a backbone composed of vertebrae (...).[well established][VHOG] UBERON:0001131 biolink:NamedThing vertebral foramen A foramen within a vertebral element through which the spinal cord runs. It is formed by the anterior segment, and the posterior part, the vertebral arch. monarch-merged.owl foramen vertebrale|vertebra neural canal Wikipedia:Vertebral_foramen|MA:0001454|AAO:0000729|OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA|SCTID:280734009|EMAPA:37803|FMA:13479 http://upload.wikimedia.org/wikipedia/commons/1/10/Foramenvertebrale.png uberon owl:Class Opening on the vertebra for a spinal nerve as it emerges from the spinal canal.[AAO] UBERON:0001149 biolink:NamedThing bare area of liver A large triangular surface of the liver devoid of peritoneal covering. monarch-merged.owl bare area|hepatic bare area|liver bare area|area nuda hepatis|area nuda (hepar)|area nuda MA:0000359|FMA:14480|SCTID:279965008|Wikipedia:Bare_area_of_the_liver|EMAPA:17945 uberon owl:Class UBERON:0001154 biolink:NamedThing vermiform appendix A blind-ended tube connected to the cecum, from which it develops embryologically[WP]. monarch-merged.owl caecal appendix|appendix|appendix vermiformis|vermix|cecal appendix|apex of caecum|apex of cecum FMA:14542|EV:0100080|MA:0001540|galen:AppendixVermiformis|CALOHA:TS-1267|EFO:0000849|SCTID:181255000|VHOG:0001306|NCIT:C12380|GAID:308|BTO:0000084|MIAA:0000287|UMLS:C0003617|Wikipedia:Vermiform_appendix|EMAPA:35140|OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA|MAT:0000287|EHDAA2:0000588|MESH:A03.492.411.495.209.290|EV:0100076 http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png uberon Mammalia owl:Class Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix. Examples: There is only one appendix[FMA:14542]. A comparative anatomical approach reveals three apparent morphotypes of the cecal appendix, as well as appendix-like structures in some species that lack a true cecal appendix. Cladistic analyses indicate that the appendix has evolved independently at least twice (at least once in diprotodont marsupials and at least once in Euarchontoglires), shows a highly significant (P < 0.0001) phylogenetic signal in its distribution, and has been maintained in mammalian evolution for 80 million years or longer.[well established][VHOG] appendiceal UBERON:0001179 biolink:NamedThing peritoneal cavity Anatomical cavity bounded by visceral and parietal peritoneum.|Anatomical cavity bounded by visceral and parietal peritoneum monarch-merged.owl saccus serosus peritonei|cavitas peritonealis EHDAA2:0001446|NCIT:C12769|MESH:A01.047.025.600.678|Wikipedia:Peritoneal_cavity|GAID:24|VHOG:0000852|SCTID:181616008|BTO:0001782|FMA:14704|UMLS:C1704247|MA:0000054|EMAPA:16138 uberon owl:Class The potential space between the parietal and visceral layers of the peritoneum, which are normally in contact. The peritoneal cavity is divided into the greater and lesser sac. The greater sac is the peritoneal cavity, and the lesser sac is the omental bursa. [TFD][VHOG] In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] UBERON:0001180 biolink:NamedThing superior recess of lesser sac monarch-merged.owl recessus superior bursae omentalis|superior omental bursa|omental bursa superior recess|recessus superior omentalis|superior recess|superior recess of omental bursa FMA:14708|EMAPA:18049|SCTID:263190002|EHDAA2:0001958|EHDAA:2343|MA:0000447 UBERON:0006299 uberon owl:Class classified as a cavity in EHDAA2, organ segment in FMA. We hedge and use a union UBERON:0001213 biolink:NamedThing intestinal villus the tiny hair-like projections that protrude from the inside of the small intestine that contain blood vessels that capture digested nutrients that are absorbed through the intestinal wall; the villi increase the absorptive surface area of the small intestine by approximately 30-fold|The tiny hair-like projections that protrude from the inside of the small intestine that contain blood vessels that capture digested nutrients that are absorbed through the intestinal wall; the villi increase the absorptive surface area of the small intestine by approximately 30-fold. monarch-merged.owl villus intestinalis (intestinum tenue)|intestinal villi|enteric villous|enteric villus|enteric villi|villi intestinales|villus|intestinal villus layer|small intestine villus UMLS:C1519988|SCTID:23230007|NCIT:C33874|BTO:0003121|TAO:0005125|EMAPA:35784|ZFA:0005125|Wikipedia:Intestinal_villus|FMA:15072|MA:0001563 http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg in mammals, villi are (largely?) absent from the large intestine, so we treat this as equivalent to small intestinal villus. small/large subdivision may not make sense for all species for which this is present (see ZFA). Note that VHOG quotes ISBN:978-0030223693 as suggesting there are some villi in the large intestine UBERON:0007607 uberon owl:Class The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. No crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. Crosnier et al. 2005[TAO] the BTO class refers to a generic villous UBERON:0001224 biolink:NamedThing renal pelvis A funnel shaped proximal portion of the ureter that is formed by convergence of the major calices [MP]. monarch-merged.owl pelvis of ureter|pyelum|kidney pelvis|p. renallis EMAPA:17948|FMA:15575|MESH:D007682|NCIT:C12887|UMLS:C0227666|SCTID:362221007|CALOHA:TS-2230|galen:RenalPelvis|Wikipedia:Renal_pelvis|GAID:426|MA:0000374 In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter Illu:kidney2.jpg uberon owl:Class UBERON:0001225 biolink:NamedThing cortex of kidney Outer cortical portion of the kidney, between the renal capsule and the renal medulla. monarch-merged.owl renal cortex|kidney cortex|cortex renalis MESH:D007672|SCTID:362211004|GAID:424|NCIT:C12739|BTO:0001166|galen:CortexOfKidney|Wikipedia:Renal_cortex|CALOHA:TS-0503|EMAPA:17952|MA:0000372|UMLS:C0022655|FMA:15581 Illu:kidney.jpg uberon owl:Class In the adult metanephros, it forms a continuous smooth outer zone with a number of projections that extend down between the pyramids. It contains the renal corpuscles and the renal tubules except for parts of the loop of Henle which descend into the renal medulla. It also contains blood vessels and cortical collecting ducts. The renal cortex is the part of the kidney where ultrafiltration occurs.[WP] UBERON:0001228 biolink:NamedThing renal papilla Tip of renal pyramid projecting into a minor calyx. monarch-merged.owl kidney papilla BTO:0003925|NCIT:C33460|MA:0002730|FMA:15622|UMLS:C0022666|SCTID:362214007|EMAPA:35727|MESH:D007679|galen:RenalPapilla|Wikipedia:Renal_papilla Kidney:PioM.png uberon owl:Class UBERON:0001229 biolink:NamedThing renal corpuscle the structure containing the glomerular capsule and the glomerulus that serves as the initial blood-filtering component of a nephron|The structure containing the glomerular capsule and the glomerulus that serves as the initial blood-filtering component of a nephron. monarch-merged.owl cortical renal corpuscle|Malpighian corpuscle|corpusculum renale|corpusculum renis|Malphigian corpuscle|kidney corpuscle TAO:0005281|ZFA:0005281|EMAPA:28236|NCIT:C33456|UMLS:C0227635|VHOG:0001262|BTO:0000333|EMAPA:35726|CALOHA:TS-1317|Wikipedia:Renal_corpuscle|FMA:15625|SCTID:361329009|MA:0000376|EV:0100385 Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron Renal:corpuscle.svg uberon owl:Class A tuft of capillaries found in a Bowman's capsule in which waste products are filtered from the blood and urine formation is initiated. Paired highly vascularized structures of the pronephros, responsible for blood filtration.[XAO]|A mass of arterial capillaries enveloped in a capsule and attached to a tubule in the kidney[BTO]|The part of the nephron that filters blood.[TAO] UBERON:0001230 biolink:NamedThing glomerular capsule A cup-like sac at the expanded beginning of a tubular component of a nephron that contains the glomerulus.|A cup-like sac at the expanded beginning of a tubular component of a nephron that contains the glomerulus monarch-merged.owl Bowman's capsule|Bowmans capsule|Muellerian capsule|capsula glomeruli|pronephric glomerular capsule|renal glomerular capsule|capsula glomerularis|Mueller capsule|Malpighian capsule|Malphigian capsule Wikipedia:Bowman%27s_capsule|ZFA:0005254|TAO:0005254|EMAPA:27973|SCTID:361331000|NCIT:C32225|MA:0001660|AAO:0010526|FMA:15626|TAO:0005310|ZFA:0005310|UMLS:C0524448|KUPO:0001001|BTO:0002297|EMAPA:28257 http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg uberon owl:Class Anatomical structure found in the kidney consisting of an expanded end of a kidney tubule surrounding a glomerulus and is the major site of filtration.[AAO] Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration[WP]. One fold of the S-shaped body gives rise to Bowman's capsule[GUDMAP] UBERON:0001232 biolink:NamedThing collecting duct of renal tubule The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient|The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient. monarch-merged.owl collecting duct|kidney collecting tubule|tubulus renalis arcuatus|ureteric tree|kidney collecting duct|arcuate renal tubule|collecting duct system|renal collecting tubule|junctional tube|collecting tubule|tubulus renalis colligens EV:0100391|ZFA:0005294|BTO:0000761|MESH:D007685|SCTID:28202009|TAO:0005294|MA:0000371|FMA:15628|GAID:434|CALOHA:TS-0860|EMAPA:28407|Wikipedia:Collecting_tubule uberon owl:Class Renal duct that collects the output from renal tubules.[TAO] in ISBN:0073040584 (Vertebrates, Kardong), the nephron is adjacent to the collecting tubule, consistent with FMA, but not GO. Wikipedia says: Many sources include the connecting tubule as part of the collecting duct system. However, the embryological origin is more similar to the nephron than it is to the rest of the collecting duct (which derives from the ureteric bud), and other sources therefore classify the connecting tubule with the nephron UBERON:0001248 biolink:NamedThing hilum of spleen The splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]. monarch-merged.owl hilum splenicum|splenic hilum|hilum|spleen hilum|hilum lienale EMAPA:19303|UMLS:C0229685|Wikipedia:Splenic_hilum|MA:0002670|NCIT:C33601|FMA:15841|SCTID:245377005 http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png uberon owl:Class UBERON:0001264 biolink:NamedThing pancreas An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. monarch-merged.owl EHDAA2:0001367|OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA|EHDAA:6893|EFO:0000855|galen:Pancreas|CALOHA:TS-0736|MIAA:0000075|MAT:0000075|AAO:0010112|Wikipedia:Pancreas|XAO:0000136|NCIT:C12393|EMAPA:17503|FMA:7198|UMLS:C0030274|EV:0100092|MESH:D010179|GAID:334|VHOG:0000050|SCTID:181277001|TAO:0000140|MA:0000120|ZFA:0000140|BTO:0000988 https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png uberon owl:Class Organ which secretes a fluid containing enzymes that aid in the digestion of food.[AAO] In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG] pancreatic As a secretory organ serving exocrine and endocrine functions, the pancreas is specific to the vertebrates[PMID:16417468] Hagfishes and lampreys are unique in the complete separation of their endocrine pancreas (islet or- gan) and their exocrine pancreas (50). The endocrine and exocrine pancreas are coassociated in crown gnathostomes (50). In Branchiostoma and Ciona, there is no diverticulum as there is in hagfishes, lampreys, and gnathostomes, only dispersed insulin-secreting cells in the walls of the gastrointestinal tract (51, 52)|The zebrafish does not have a discrete pancreas. Exocrine pancreatic tissue can be found scattered along the intestinal tract. The acinar structure of the exocrine pancreas is very similar to that of mammals and comprises cells with a very dark, basophilic cytoplasm The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1-2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans UBERON:0001283 biolink:NamedThing bile canaliculus An intercellular channel that takes up bile from hepatocytes, transporting it to the bile ducts. monarch-merged.owl bile capillary|bile canaliculi|biliary canaliculus NCIT:C32202|MESH:D001648|ZFA:0005163|UMLS:C0005393|FMA:17547|BTO:0002841|MA:0002495|Wikipedia:Bile_canaliculus|EMAPA:36534|TAO:0005163|SCTID:270023005 http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png uberon owl:Class conducts the flow of bile countercurrent to the direction of portal blood flow and connects with the canal of Hering[DOI:10.1002/cphy.c120027] The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP] UBERON:0001284 biolink:NamedThing renal column A column of tissue that is histologically identical to tissue found in the renal cortex, but which is located in the medulla between the renal pyramids. monarch-merged.owl columnae renales|renal cortical column|kidney column|renal column of Bertini|cortical column|column of Bertini|Bertin's column|column of Bertin|columna Bertini NCIT:C32387|MA:0001651|EMAPA:37487|Wikipedia:Renal_column|UMLS:C0736346|FMA:17633 Illu:kidney2.jpg Check part_of location against textual definition uberon owl:Class UBERON:0001285 biolink:NamedThing nephron The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]|The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]. monarch-merged.owl nephroneum|mature nephron|tubulus renalis EMAPA:28491|EV:0100384|ZFA:0005282|FMA:17640|SCTID:361337001|TAO:0002153|GAID:428|Wikipedia:Nephron|NCIT:C13048|EMAPA:35592|MESH:D009399|MA:0000375|UMLS:C0027713|BTO:0000924|CALOHA:TS-1312 http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png kidney terms require review for cross-vertebrate compatibility and developmental relationships. uberon owl:Class Functional unit of the kidney that filters waste.[TAO] In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992) UBERON:0001286 biolink:NamedThing Bowman's space A narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP]. monarch-merged.owl renal capsular space|Bowmanb%s space|glomerular capsule space|inter-glomerular space|urinary space of renal corpuscle|Bowman's space|capsular space|glomerular urinary space|urinary space|pronephric capsular space ZFA:0005312|TAO:0005312|EMAPA:27985|SCTID:244284006|UMLS:C0227643|ZFA:0005283|Wikipedia:Bowman's_space|TAO:0005283|NCIT:C33840|MA:0001664|FMA:17676|EMAPA:28263 TODO - fix ZFA uberon owl:Class Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule.[TAO] UBERON:0001293 biolink:NamedThing outer medulla of kidney The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]. monarch-merged.owl outer zone of renal medulla|zona externa medullae renalis|set of outer region of renal pyramids|kidney outer medulla|zona externa (medullaris renalis)|outer zone of medulla of kidney|renal outer medulla|outer renal medulla FMA:17733|CALOHA:TS-0508|EMAPA:28310|MA:0001653|BTO:0001746 uberon owl:Class UBERON:0001294 biolink:NamedThing inner medulla of kidney Innermost region of the mammalian kidney. monarch-merged.owl set of inner region of renal pyramids|zona interna (medullaris renalis)|inner zone of renal medulla|renal inner medulla|inner renal medulla|inner zone of medulla of kidney|zona interna medullae renalis|kidney inner medulla CALOHA:TS-0506|BTO:0001745|EMAPA:28349|FMA:17734|MA:0001652 uberon owl:Class unique to mammals UBERON:0001295 biolink:NamedThing endometrium the glandular mucous membrane lining of the uterine cavity that is hormonally responsive during the estrous/menstrual cycle and during pregnancy|The glandular mucous membrane lining of the uterine cavity that is hormonally responsive during the estrous/menstrual cycle and during pregnancy. monarch-merged.owl uterine mucosa|tunica mucosa (endometrium)|tunica mucosa uteri|uterine mucous membrane|uterine endometrium EFO:0000980|VHOG:0001285|EV:0100115|GAID:377|FMA:17742|EMAPA:29917|NCIT:C12313|CALOHA:TS-0276|MAT:0000319|MA:0000390|MESH:D004717|SCTID:278867007|Wikipedia:Endometrium|MIAA:0000319|BTO:0001422|UMLS:C0014180 Illu:cervix.jpg uberon owl:Class The mucous membrane lining the uterus. [TFD][VHOG] The maternal part of the placenta (of eutherian mammals) is the vascularized and glandular uterine lining, or endometrium.[well established][VHOG] endometrial Animals that have estrous cycles reabsorb the endometrium if conception does not occur during that cycle. Animals that have menstrual cycles shed the endometrium through menstruation instead in FMA this is subdivided into basal and outer UBERON:0001307 biolink:NamedThing capsule of ovary A capsule that surrounds a female gonad. monarch-merged.owl ovary capsule|ovarian capsule FMA:18662|UMLS:C0227877|NCIT:C49265|EMAPA:35626|MA:0001706|SCTID:258491008 uberon owl:Class UBERON:0001456 biolink:NamedThing face A subdivision of the head that has as parts the layers deep to the surface of the anterior surface, including the mouth, eyes, and nose (when present). In vertebrates, this includes the facial skeleton and structures superficial to the facial skeleton (cheeks, mouth, eyeballs, skin of face, etc). monarch-merged.owl visage|facia/facies Wikipedia:Face|MESH:D005145|UMLS:C0015450|galen:Face|EMAPA:32763|MA:0002473|GAID:64|FMA:24728|OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA|CALOHA:TS-2216|BTO:0003369|NCIT:C13071|HAO:0000316|SCTID:302549007 http://upload.wikimedia.org/wikipedia/commons/5/55/Mona_Lisa_headcrop.jpg uberon owl:Class The area that extends from the median ocellus to the oral foramen[HAO].|Subdivision of head which consists of the viscerocranium and all layers superficial to it. Examples: There is only one face. facial The face develops from outward growth of tissue located rostral to the cranium & pharynx. The lower jaw and most of the upper jaw are formed by growth of the first pharyngeal (branchial) arch. The upper incisor region and the nose and forehead (frontal region) are formed from tissue located rostral to the neural tube (frontonasal prominence) UBERON:0001473 biolink:NamedThing lymphatic vessel A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]. monarch-merged.owl vas lymphaticum|lymph vessel XAO:0000375|EMAPA:35532|BTO:0000752|FMA:30315|SCTID:279089004|MA:0000138|VHOG:0001249|CALOHA:TS-2102|EFO:0000873|MAT:0000443|UMLS:C0229889|NCIT:C33038|OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA|TAO:0005105|Wikipedia:Lymphatic_vessel|AAO:0011005 http://upload.wikimedia.org/wikipedia/commons/4/44/Illu_lymph_capillary.jpg uberon owl:Class A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]|A vessel that contains or conveys lymph.[AAO] Tetrapods have evolved distinct lymphatic systems, in which lymphatic capillaries help drain most of the tissues of the body.[well established][VHOG] UBERON:0001474 biolink:NamedThing bone element Skeletal element that is composed of bone tissue. monarch-merged.owl bone|bone organ|bones XAO:0000169|FMA:30317|NCIT:C12366|MIAA:0000299|SCTID:90780006|GAID:92|EMAPA:32782|EFO:0000298|AAO:0000047|TAO:0001514|AEO:0000082|MA:0001459|ENVO:00002039|BTO:0000140|Wikipedia:Bone|VHOG:0001190|OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA|CALOHA:TS-0088|ZFA:0001514|OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA|EV:0100140|galen:Bone|EHDAA2:0003082|MAT:0000299|FMA:5018|VSAO:0000057|UMLS:C0262950 uberon owl:Class Also called osseous tissue, (Latin: os). Is a type of hard endoskeletal connective tissue found in many vertebrate animals. Bone is the main tissue of body organs that support body structures, protect internal organs, (in conjunction with muscles) facilitate movement; and are involved with cell formation, calcium metabolism, and mineral storage.[AAO]|Skeletal element that is composed of bone tissue.[VSAO]|Portion of tissue which is calcified connective tissue making up the structural elements of the skeletal system.[TAO] relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO] The 'new animal phylogeny' reveals that many of the groups known to biomineralize sit among close relatives that do not, and it favours an interpretation of convergent or parallel evolution for biomineralization in animals. (...) Whether this 'biomineralization toolkit'of genes reflects a parallel co-option of a common suite of genes or the inheritance of a skeletogenic gene regulatory network from a biomineralizing common ancestor remains an open debate.[debated][VHOG] UBERON:0001484 biolink:NamedThing articular capsule An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]. monarch-merged.owl capsulae articulares|joint capsule|capsula articularis|joint fibrous capsule|fibrous capsule of joint MA:0001519|SCTID:182238002|NCIT:C84388|FMA:34836|UMLS:C0206207|Wikipedia:Articular_capsule|MESH:D017746|EMAPA:37621|galen:JointCapsule|NCIT:C32259|GAID:263 http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray299.png|http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png uberon owl:Class check ncita UBERON:0001486 biolink:NamedThing hip joint A synovial joint that connects the femur to the acetbulum of the innominate bone. monarch-merged.owl coxal articulation|femoro-iliac joint|articulatio coxofemoralis BTO:0001502|NCIT:C32742|UMLS:C0019558|MESH:D006621|MA:0000470|OpenCyc:Mx4rwP32b5wpEbGdrcN5Y29ycA|GAID:262|VHOG:0001001|SCTID:182201002|EMAPA:19136|FMA:35178|galen:HipJoint|Wikipedia:Hip#Articulation uberon owl:Class UBERON:0001533 biolink:NamedThing subclavian artery One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta|One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta. monarch-merged.owl arteria subclavia|arterial tree of upper limb|pectoral artery|PA|subclavian arterial tree MESH:D013348|EHDAA:4357|SCTID:265790007|GAID:511|ZFA:0005086|FMA:3951|MA:0002045|EHDAA2:0001933|Wikipedia:Subclavian_artery|UMLS:C0038530|XAO:0000365|AAO:0010232|NCIT:C33643|EMAPA:17617|TAO:0005086|OpenCyc:Mx4rvp8u1JwpEbGdrcN5Y29ycA http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO) uberon owl:Class The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993[TAO]|Artery which supplies blood via branches to the various muscles of the shoulder region and to the forelimb.[AAO]|In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib[WP] UBERON:0001555 biolink:NamedThing digestive tract A tube extending from the mouth to the anus. monarch-merged.owl enteric tract|gut tube|alimentary canal|alimentary tract|gut|digestive canal|digestive tube EHDAA2:0000726|BTO:0000511|TGMA:0001819|BILA:0000083|FBbt:00003125|ZFA:0000112|TAO:0000112|EMAPA:16247|EHDAA:518|AAO:0010023|VHOG:0000309|WBbt:0005743|BTO:0000545|FMA:45615|NCIT:C34082|MA:0000917|UMLS:C0017189|OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA|galen:AlimentaryTract uberon owl:Class The alimentary or digestive tract, and associated organs.[TAO] The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG] FMA also has a term 'gastrointestinal tract', but this includes the liver.|we place the MA and EMAPA class here, although the intent is probably a smaller region. See https://github.com/obophenotype/uberon/issues/509 we following Kardong in naming the entire tube from mouth to anus the alimentary canal. Kardong calls the portion of this tract that excludes buccal cavity and pharynx the 'alimentary canal', consider adding an extra class for this UBERON:0001630 biolink:NamedThing muscle organ Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. monarch-merged.owl muscle TAO:0005145|AAO:0011066|MA:0000015|galen:Muscle|OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA|GAID:131|EV:0100146|XAO:0000172|ZFA:0005145|SCTID:71616004|VHOG:0001245|EMAPA:37474|FMA:5022|EMAPA:32715 uberon owl:Class Portion of tissue composed of contractile fibers.[TAO] It seems clear that the metazoan ancestor inherited from its unicellular descendants an actin cytoskeleton and motor-proteins of the myosin superfamily. Within metazoans, these two molecules were arranged into effective contractile units, the muscles. The basic trends for muscle evolution are already expressed in the diploblastic taxa.[well established][VHOG] muscular UBERON:0001703 biolink:NamedThing neurocranium Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof. monarch-merged.owl brain case|braincase|brain box|brain pan FMA:53672|TAO:0001580|EHDAA2:0000243|SCTID:361731002|MA:0000317|EMAPA:17681|XAO:0003170|Wikipedia:Neuroranium|AAO:0010153|ZFA:0001580 uberon owl:Class Anatomical cluster that consists of the cartilages and bones that surround the brain.[TAO] neurocranial It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton The cartilaginous parts of the neurocranium undergo endochondral ossification in most species; ossification has been lost in cartilaginous fishes, but the cartilaginous condition of the skull of lampreys is considered to be primitive (Kardong, 1995)[PMID:11523816]. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification[WP]. It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ... UBERON:0001707 biolink:NamedThing nasal cavity An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present. monarch-merged.owl cavity of olfactory apparatus|olfactory cavity|olfactory pit|nasal conduit space|nasal fossa|cavum nasi|cavitas nasi|cavitas nasalis|nasal canal|olfactory chamber|cavity of nose|nasal pit|olfactory chamber cavity EMAPA:17604|SCTID:263481003|AAO:0000314|MESH:D009296|MA:0000284|ZFA:0000130|BTO:0002096|UMLS:C0027423|GAID:350|FMA:54378|VHOG:0000271|Wikipedia:Nasal_cavity|EHDAA:6801|EHDAA2:0001226|TAO:0000130|NCIT:C12424 http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg define the boundaries of this cavity for a variety of species and check that parthood relations are not too strong. uberon owl:Class Saclike space internal to the nasal capsule lined by respiratory and sensory epithelium and glandular tissue.[AAO]|a large air filled space above and behind the nose in the middle of the face[WP][Wikipedia:Nasal_cavity]. Despite significant modification to the nasal cavity within Archosauria and its extreme hypertrophy and supraorbital development in Lambeosaurinae, the neural olfactory system and the olfactory region of the nasal cavity proper retain their plesiomorphic positions and associations, suggesting that this system is highly conserved in vertebrate evolution.[well established][VHOG] in humans, the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures UBERON:0001719 biolink:NamedThing nucleus ambiguus A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]. monarch-merged.owl nucleus innominatus|Amb|ambiguous nucleus|ambiguus nucleus NCIT:C12835|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765|MA:0001050|MBA:135|BIRNLEX:2650|SCTID:280184006|HBA:9516|EV:0100292|DHBA:12540|UMLS:C1281211|BAMS:AMB|UMLS:C0152400|BAMS:Amb|FMA:54588|EMAPA:35596|EHDAA2:0004305|BM:Me-AMB|Wikipedia:Nucleus_ambiguus http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png uberon owl:Class UBERON:0001724 biolink:NamedThing sphenoidal sinus One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]. monarch-merged.owl sphenoid sinus|sinus sphenoidalis SCTID:181207000|UMLS:C0037885|OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA|GAID:359|MA:0001795|FMA:54683|MESH:D013101|NCIT:C12278|Wikipedia:Sphenoidal_sinus http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray856.png uberon owl:Class UBERON:0001726 biolink:NamedThing papilla of tongue monarch-merged.owl lingual papilla|tongue papilla UMLS:C0226964|EMAPA:32777|UMLS:C1289183|BIRNLEX:4102|FMA:54819|NCIT:C33258|SCTID:368728006|MA:0001593 uberon owl:Class UBERON:0001731 biolink:NamedThing cavity of pharynx A anatomical space that is enclosed by a pharynx.|An anatomical space that is enclosed by a pharynx. monarch-merged.owl lumen of pharynx|pharyngeal cavity|cavitas pharyngis|cavitas pharyngealis BTO:0002097|AAO:0010435|XAO:0000105|BSA:0000113|SCTID:180543003|EMAPA:18381|FMA:54935 uberon owl:Class See notes for pharynx - as a grouping class this is probably too bad. We exclude WBbt:0005790 (pharyngeal lumen) because of the developmental relationship TOODO check UBERON:0001733 biolink:NamedThing soft palate The muscular, non-bony arch-shaped posterior portion of the palate extending from the posterior edge of the hard palate. monarch-merged.owl velum palatinum|velum|muscular palate|palatum molle MA:0002412|MESH:D010160|Wikipedia:Soft_palate|GAID:1284|UMLS:C0030219|FMA:55021|SCTID:245784004|BTO:0005405|MIAA:0000039|NCIT:C12231|MAT:0000039|EMAPA:18949 Tonsils:diagram.jpg uberon owl:Class A muscular arch-shaped structure that is composed of the musculus uvuli and parts of tensor veli palatini, levator veli palatini, palatoglossus and palatopharyngeus and attaches to the hard palate and modulates the connections between the oral cavity and pharynx soft tissue arch .[FEED] velar UBERON:0001744 biolink:NamedThing lymphoid tissue Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]. monarch-merged.owl lymphatic tissue|lymphocytic tissue UMLS:C0024296|SCTID:181768009|GAID:342|MA:0002436|MESH:D008221|galen:LymphoidTissue|Wikipedia:Lymphoid_tissue|BTO:0000753|CALOHA:TS-0584|FMA:55220|NCIT:C13049 uberon owl:Class UBERON:0001749 biolink:NamedThing parenchyma of parathyroid gland A parenchyma that is part of a parathyroid gland [Automatically generated definition]. monarch-merged.owl parathyroid parenchyma|parathyroid gland parenchyma|parenchyma of parathyroid EMAPA:35664|FMA:55569|MA:0002677 uberon owl:Class UBERON:0001758 biolink:NamedThing periodontium The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]. monarch-merged.owl paradentium|periodontal ligament|tooth supporting structure|periodontal membrane GAID:216|MESH:A14.254.646|BTO:0001021|UMLS:C0031093|Wikipedia:Periodontium|NCIT:C33304|CALOHA:TS-2380 The:Periodontium.jpg uberon owl:Class FMA treats periodontium and periodontal ligament as the same UBERON:0001761 biolink:NamedThing future foramen cecum A thickened and indented region in the midline in the floor of the rostral part of the pharyngeal region of the foregut, located between the second and third branchial arches that is the first indication of the thyroid primordium. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.132]. monarch-merged.owl foramen caecum|foramen cecum|future foramen caecum|future foramen cecum of tongue EHDAA2:0000550|EMAPA:17069|EHDAA:2150|VHOG:0000826|EHDAA:2977 uberon owl:Class UBERON:0001764 biolink:NamedThing maxillary sinus One of the paired paranasal sinuses, located in the body of the maxilla, communicating with the middle meatus of the nasal cavity. monarch-merged.owl maxillary antrum|Highmore antrum|antrum of Highmore|sinus maxilliaris MA:0001794|OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA|SCTID:181204007|UMLS:C0024957|CALOHA:TS-2231|GAID:358|NCIT:C12275|Wikipedia:Maxillary_sinus|FMA:57715|MESH:D008443 http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray1199.png uberon owl:Class UBERON:0001768 biolink:NamedThing uvea the pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited].|The pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]. monarch-merged.owl tunica vasculosa of eyeball|uveal tract|tunica vasculatis oculi|tunica vasculosa bulbi|uvea|pars iridica retinae|vascular layer of eyeball Wikipedia:Uvea|UMLS:C0042160|EMAPA:35901|MA:0002480|GAID:912|FMA:58103|MESH:D014602|CALOHA:TS-2228|SCTID:280648000|NCIT:C12811 http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png TODO - check child terms, isa vs partof. See also MA:0001284 ! tunica vasculosa plexus uberon owl:Class uveal UBERON:0001771 biolink:NamedThing pupil The central circular aperture of the iris through which light rays enter the eye.|the central circular aperture of the iris through which light rays enter the eye monarch-merged.owl pupils GAID:918|ZFA:0001283|MESH:D011680|Wikipedia:Pupil|NCIT:C33429|OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA|MA:0001292|FMA:58252|SCTID:35146001|VHOG:0000116|XAO:0000283|AAO:0010351|UMLS:C0034121|TAO:0001283 Eye:iris.jpg uberon owl:Class The circular orifice in the centre of the iris, through which light enters into the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG] UBERON:0001772 biolink:NamedThing corneal epithelium The smooth stratified squamous epithelium that covers the outer surface of the cornea.|the smooth stratified squamous epithelium that covers the outer surface of the cornea monarch-merged.owl cornea epithelium|e. anterius corneae|cornea epithelial tissue|epithelial tissue of cornea|epithelium anterius (cornea)|epithelium anterius corneae|epithelium corneæ anterior layer|endothelium camerae anterioris bulbi|external epithelium of cornea|endothelium corneale|epithelium posterius corneae|anterior corneal epithelium|endothelium anterius corneae|anterior endothelium of cornea|epithelium of cornea FMA:58263|SCTID:368825001|GAID:895|Wikipedia:Corneal_epithelium|NCIT:C12928|EFO:0001917|MA:0001243|CALOHA:TS-0173|ZFA:0001683|UMLS:C0459875|BTO:0000287|EMAPA:17162|TAO:0002187|MESH:D019573|EHDAA2:0000319 http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png uberon owl:Class Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea.[TAO] In zebrafish: nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals|In Humans: It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei UBERON:0001773 biolink:NamedThing sclera Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]. monarch-merged.owl scleral capsule XAO:0000183|SCTID:181163006|ZFA:0005563|Wikipedia:Sclera|EMAPA:19027|UMLS:C0036410|FMA:58269|VHOG:0001274|NCIT:C12784|EV:0100342|MESH:D012590|OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA|GAID:911|AAO:0010354|MA:0000280|BTO:0001606 Disease notes: implicated in rheumatoid arthritis. http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg uberon owl:Class The tough, usually white, outer coat of the eyeball, covering all the posterior surface and continuous anteriorly with the cornea. [TFD][VHOG]|The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted][Wikipedia:Sclera]. scleral in fish, reptiles and monotremes the connective tissue of the sclera is skeletal continuous with the dura mater and the cornea; The sclera forms the posterior five-sixths of the connective tissue coat of the globe. Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson].|Seko et al demonstrate chondrogenic potential and identify this as connective tissue[DOI:10.1371/journal.pone.0003709]. UBERON:0001791 biolink:NamedThing inner nuclear layer of retina Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia). monarch-merged.owl inner nuclear layer|layer of inner granules|INL|neural retina inner nuclear layer|stratum nucleare internum|retinal inner nuclear layer|retina inner nuclear layer|intermediate cell layer|stratum nucleare internum retinae|retina, inner nuclear layer Wikipedia:Inner_nuclear_layer|FMA:58686|BTO:0003176|NCIT:C32808|EMAPA:19155|UMLS:C0229211|SCTID:362520009|ZFA:0000119|VHOG:0001167|NLXANAT:1005031|XAO:0003221|TAO:0000119|BAMS:Rinl|MA:0001311|NLX:93816 AO notes NLXANAT:1005031 appears to be retired uberon owl:Class The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells[BTO:0003176]. (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] UBERON:0001792 biolink:NamedThing ganglionic layer of retina Cytoarchitectural layer of retina that contains somata of retinal ganglion cells, bounded by the stratum opticum and the inner plexiform layer|Cytoarchitectural layer of retina that contains somata of retinal ganglion cells, bounded by the stratum opticum and the inner plexiform layer. monarch-merged.owl retina ganglion layer|stratum ganglionicum (retina)|retina ganglion cell layer|ganglionic cell layer of retina|retina, ganglion cell layer|retinal ganglion cell layer|retinal ganglion layer|ganglion cell layer|GCL layer|stratum ganglionicum retinae|RGC layer TAO:0000024|FMA:58687|CALOHA:TS-0867|BTO:0003398|XAO:0003223|EMAPA:35739|MA:0001310|SCTID:280670002|ZFA:0000024|NCIT:C32652|BAMS:Rgcl|NLXANAT:1005030|Wikipedia:Ganglion_cell_layer|NLX:36500|VHOG:0001166 http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png uberon owl:Class a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain[Wikipedia:Ganglion_cell_layer]. (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030] UBERON:0001794 biolink:NamedThing inner limiting layer of retina The row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]. monarch-merged.owl internal limiting lamina of retina|retina inner limiting membrane|retina internal limiting lamina|internal limiting membrane of retina|inner limiting membranes|stratum limitans internum retinae|inner limiting membrane|inner limiting membrane of retina|ILM MA:0001313|ZFA:0001029|UMLS:C1512783|NCIT:C32807|FMA:58689|XAO:0003222|Wikipedia:Inner_limiting_membrane|EMAPA:36519|TAO:0001029|SCTID:280677004 TODO - check frog/fish uberon owl:Class Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf[ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3]. UBERON:0001835 biolink:NamedThing lower lip Lip that covers the lower portion of the mouth.[TAO]. monarch-merged.owl labium inferius oris|lower jaw lip EMAPA:17909|OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA|EHDAA2:0001020|ZFA:0005225|SCTID:245777007|Wikipedia:Lower_lip|MA:0000921|FMA:59818|NCIT:C94572|UMLS:C0458583|TAO:0002060 http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg UBERON:0003392 uberon owl:Class Lip that covers the lower portion of the mouth.[TAO] UBERON:0001837 biolink:NamedThing duct of salivary gland The duct of a salivary gland. monarch-merged.owl secretory duct|salivary gland duct|salivary duct EMAPA:35750|GAID:939|BTO:0005115|FMA:59908|SCTID:181238004|NCIT:C32486|Wikipedia:Salivary_duct|MA:0001586|MESH:D018987 uberon owl:Class UBERON:0001875 biolink:NamedThing globus pallidus Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle. monarch-merged.owl nucleus pallidus|globus pallidus (Burdach)|pallidum|paleostriatum|pale body|pallidium EV:0100188|MESH:A08.186.211.730.885.105.487.397|MAT:0000510|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=231|NCIT:C12449|MA:0000890|BAMS:GP|Wikipedia:Globus_pallidus|SCTID:362361005|CALOHA:TS-2013|HBA:4293|EMAPA:35380|DHBA:10342|BIRNLEX:1234|PBA:10097|FMA:61835|EFO:0000905|BTO:0002246|GAID:668|UMLS:C0017651 BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus Brain:structure.gif uberon owl:Class Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA][FMA:61835]. pallidal UBERON:0001890 biolink:NamedThing forebrain The most anterior region the brain including both the telencephalon and diencephalon. monarch-merged.owl FB|prosencephalon BTO:0000478|MIAA:0000105|UMLS:C0085140|MA:0000170|EHDAA2:0000556|ZFA:0000109|EHDAA:3470|MESH:D016548|NCIT:C40185|EMAPA:16895|BAMS:Forebrain|DHBA:10156|AAO:0010147|XAO:0000011|EFO:0000909|Wikipedia:Forebrain|FMA:61992|TAO:0000109|SCTID:362291003|CALOHA:TS-0380|MAT:0000105|BIRNLEX:1509|DMBA:15566|VHOG:0000383|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=27|BAMS:FB http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg uberon owl:Class The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995.[TAO]|Most anterior of the three regions of the brain consisting of the telencephalon and diencephalon.[AAO] relationship loss: develops_from forebrain neural tube (TAO:0007041)[TAO] In craniate embryos, neural expression of Distal-less-related genes is exclusively in the forebrain (...). Because the major neural expression domain of amphioxus AmphiDll is in the anterior three-fourths of the cerebral vesicle, we suggest that this region of the neural tube is homologous to parts of the craniate forebrain. This conclusion is strongly supported by three-dimensional, computer-assisted reconstruction of the neural tube of amphioxus based on serial transmission electron microscopy. At the neuroanatomical level, a number of detailed homologies are indicated between the anterior three-fourths of the amphioxus cerebral vesicle and the diencephalic region of the craniate forebrain. If one assumes that the amphioxus condition fairly represents the nervous system of the proximate ancestor of the craniates, one can suggest that they evolved from a creature that had the beginnings of a forebrain.[well established][VHOG] prosencephalic UBERON:0001943 biolink:NamedThing midbrain tegmentum Ventral part of the midbrain, separated from the hindbrain by the isthmus[ISBN:0471888893]. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle[FMA] The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct[WP]. monarch-merged.owl tegmentum mesencephali|MTg|tegmentum|mesencephalic tegmentum|tegmentum of midbrain|tegmentum mesencephalicum DHBA:12195|UMLS:C0039441|EMAPA:18215|MA:0000212|XAO:0004271|TAO:0000160|FMA:62393|SCTID:362392007|EHDAA2:0004475|BAMS:MTg|MAT:0000452|HBA:9002|VHOG:0001367|ZFA:0000160|BTO:0003388|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=491|EFO:0000921|BIRNLEX:1200|Wikipedia:Midbrain_tegmentum 'tegmentum' is used generically for the ventral part of the brainstem (ISBN:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png uberon owl:Class Together, our results reveal a shared basic organization in the tegmental domains of the diencephalon and midbrain of developing lamprey, indicating early appearance of the domain in vertebrate phylogeny.[well established][VHOG] UBERON:0001968 biolink:NamedThing semen Organism substance that is composed of sperm cells suspended in seminal fluid. monarch-merged.owl sperm|ejaculate OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA|UMLS:C1518159|Wikipedia:Semen|NCIT:C13713|MESH:D012661|BTO:0001230|CALOHA:TS-0917|EMAPA:31488|UMLS:C2756969|MA:0002522|GAID:1169|FMA:62966|NCIT:C13277 http://upload.wikimedia.org/wikipedia/commons/4/40/Human_semen_in_petri_dish2.jpg uberon owl:Class seminal Note that in this ontology, semen is defined as the sum of sperm and seminal fluid, where seminal fluid is defined in taxonomically generic way (see comments for UBERON:0006530). UBERON:0001969 biolink:NamedThing blood plasma The liquid component of blood, in which erythrocytes are suspended. monarch-merged.owl plasma|portion of plasma|portion of blood plasma|blood plasm OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw|GAID:1178|FMA:62970|CALOHA:TS-0800|EMAPA:35690|NCIT:C13356|MIAA:0000052|MA:0002501|BTO:0000131|MAT:0000052|MESH:D010949|UMLS:C0032105|Wikipedia:Blood_plasma|EFO:0001905 uberon owl:Class UBERON:0001974 biolink:NamedThing lamina propria of esophagus A lamina propria that is part of a esophagus [Automatically generated definition]. monarch-merged.owl oesophagus lamina propria|gullet lamina propria|lamina propria of oesophagus|lamina propria mucosa of gullet|lamina propria mucosa of esophagus|lamina propria mucosae of gullet|oesophagus lamina propria mucosae|gullet lamina propria mucosae|lamina propria mucosae of esophagus|esophagus lamina propria mucosa|esophageal lamina propria|gullet lamina propria mucosa|lamina propria of gullet|esophagus lamina propria mucosae|esophagus lamina propria|lamina propria mucosa of oesophagus|lamina propria mucosae of oesophagus|oesophagus lamina propria mucosa MA:0001568|UMLS:C1707949|FMA:63050|EMAPA:26987|NCIT:C49223 uberon owl:Class UBERON:0001977 biolink:NamedThing blood serum The portion of blood plasma that excludes clotting factors. monarch-merged.owl serum EMAPA:35770|MA:0002502|NCIT:C13325|BTO:0001239|EHDAA2:0004728|FMA:63083|UMLS:C0229671|BTO:0000133|Wikipedia:Serum_(blood)|CALOHA:TS-0923 uberon owl:Class UBERON:0001981 biolink:NamedThing blood vessel A vessel through which blood circulates in the body. monarch-merged.owl vascular tree organ region|vascular element|vas sanguineum|region of vascular tree organ XAO:0001011|OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA|NLXANAT:090901|SCTID:361097006|AAO:0011004|UMLS:C0005847|EMAPA:35993|MESH:D001808|VHOG:0001250|FMA:50722|EMAPA:32743|ZFA:0005314|EFO:0000817|AEO:0000207|EHDAA:240|GAID:169|MAT:0000393|EHDAA2:0003252|NCIT:C12679|CALOHA:TS-0080|FMA:63183|MA:0000060|Wikipedia:Blood_vessel|TAO:0002137|BTO:0001102 http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg consider adopting the EMAPA superclass 'vascular element', which includes microvasculature (e.g. capillaries), vascular plexus uberon owl:Class Any of the vessels through which blood circulates in the body.[AAO]|Any of the vessels through which blood circulates in the body. [XAO:0001011_][VHOG] The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] annelids have blood vessels, but this class is not applicable to annelids. FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX UBERON:0002001 biolink:NamedThing joint of rib Any joint that connects a rib to another structure (or another rib). Examples: costochondral, costovertebral, interchondral, sternocostal joints. monarch-merged.owl rib joint MA:0001508|UMLS:C1261194|FMA_RETIRED:64994|NCIT:C49575|SCTID:263314001 uberon owl:Class UBERON:0002006 biolink:NamedThing cortex of lymph node Peripheral portion of the lymph node, underneath the capsule[WP]. monarch-merged.owl lymph node cortex|cortex nodi lymphoidei UMLS:C0933402|FMA:66253|MA:0000740|Wikipedia:Cortex_of_lymph_node|EMAPA:35525|NCIT:C33029 http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png uberon owl:Class UBERON:0002007 biolink:NamedThing medulla of lymph node The mdeullary portion of the lymph node, which contains large blood vessels, sinuses and medullary cords that contain antibody-secreting plasma cells. monarch-merged.owl medulla nodi lymphoidei|lymph node medulla FMA:66254|MA:0000745|EMAPA:35529 uberon owl:Class UBERON:0002015 biolink:NamedThing kidney capsule the tough fibrous layer surrounding the kidney which is covered in a thick layer of perirenal adipose tissue that functions to provide some protection from trauma and damage|The tough fibrous layer surrounding the kidney which is covered in a thick layer of perirenal adipose tissue that functions to provide some protection from trauma and damage. monarch-merged.owl renal capsule|capsula fibrosa renis|fibrous capsule of kidney|capsule of kidney SCTID:243657006|Wikipedia:Kidney_capsule|FMA:66610|galen:CapsuleOfKidney|MA:0000370|EMAPA:18679|NCIT:C12885|UMLS:C0227637 Illu:kidney.jpg uberon owl:Class provides some protection from trauma and damage. The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly).[Wikipedia:Kidney_capsule] UBERON:0002081 biolink:NamedThing cardiac atrium Cardiac chamber in which blood enters the heart. monarch-merged.owl heart atrium|atrium|atria|cardiac atria|atrium of heart|atrial tissue BTO:0000903|EHDAA:1265|GAID:555|ZFA:0000471|MAT:0000496|FMA:7099|Wikipedia:Heart_atrium|NCIT:C12728|EV:0100019|MESH:D006325|SCTID:261405004|EFO:0000277|CALOHA:TS-0437|UMLS:C0018792|galen:Atrium|VHOG:0000175|EMAPA:16688|AAO:0010246|EHDAA2:0000154|TAO:0000471|MA:0000073 uberon owl:Class One of four heart chambers.[TAO]|One of two chambers of the heart which receive blood from the veins and forces it by muscular contration to the ventricle.[AAO] In the primitive vertebrate heart the four chambers are: 1. Sinus venosus (...) 2. Atrium (...) 3. Ventricle (...) 4. Conus arteriosus (...).[well established][VHOG] UBERON:0002082 biolink:NamedThing cardiac ventricle Cardiac chamber through which blood leaves the heart. monarch-merged.owl ventricle of heart|heart ventricle|lower chamber of heart|ventricle ZFA:0000009|UMLS:C0018827|EHDAA2:0004164|VHOG:0000435|EFO:0000317|CALOHA:TS-0444|TAO:0000009|EV:0100020|OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA|AAO:0010249|MA:0000091|MAT:0000497|SCTID:277699000|EMAPA:17331|XAO:0003193|EHDAA:1912|galen:Ventricle|MESH:D006352|GAID:568|BTO:0000862|FMA:7100|Wikipedia:Ventricle_(heart)|NCIT:C12730 uberon owl:Class One of four heart chambers.[TAO]|A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO] In the primitive vertebrate heart the four chambers are: 1. Sinus venosus (...) 2. Atrium (...) 3. Ventricle (...) 4. Conus arteriosus (...)[well established][VHOG] UBERON:0002087 biolink:NamedThing atrioventricular canal The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]. monarch-merged.owl AV canal|canalis atrioventricularis|ependymal canal|AVC|atrio-ventricular canal|atrial canal SCTID:341079007|VHOG:0001473|EHDAA:764|XAO:0004123|FMA:71121|Wikipedia:Atrioventricular_canal|ZFA:0001315|TAO:0001315|EMAPA:16546 http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png uberon owl:Class The canal connecting the primitive atrium and ventricle in fishes and amniotes embryo. [TFD][VHOG] The heart is the first organ to form and function in a vertebrate. (...) Septation of the AV canal is initiated with the formation of inferior and superior endocardial cushions in response to signaling from the overlying myocardium. (...) Analysis of zebrafish mutants with cardiovascular defects uncovered a previously unexpected level of conservation between zebrafish and human cardiovascular physiology.[uncertain][VHOG] In the embryo, the atrioventricular canal delays the impulse from atrium to ventricle[PMID:22984480] The right side of the AVC becomes the tricuspid valve whereas the left side of the AVC will become the bicuspid valve this is a lumen in EHDAA2 UBERON:0002090 biolink:NamedThing postcranial axial skeleton The postcranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]. monarch-merged.owl post-cranial axial skeleton|axial skeleton MIAA:0000148|MA:0002986|EMAPA:17214|FMA:71221|EHDAA:5049|VSAO:0000093|MAT:0000148|ZFA:0000317|EHDAA2:0000161|XAO:0003073|EMAPA:37721|VHOG:0000317|TAO:0000317|AAO:0000034|EFO:0000942 previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above). Status: MA - fixed. uberon http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton owl:Class The post-cranial structural components forming the long axis of the vertebrate body; usually consists of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins.[TAO]|Skeletal subdivision of the central body axis including vertebrae, notochord, ribs, and sternum.[VSAO]|The axial skeleton is formed by the vertebral column, a metameric, semi-flexible, arched bar located in the dorsal part of the trunk, and is formed by a series of cartilaginous or bony vertebrae. It provides suspension for the appendicular skeleton and protection for the spinal nerve cord.[AAO] The axial musculoskeletal system represents the plesiomorphic locomotor engine of the vertebrate body, playing a central role in locomotion. In craniates, the evolution of the postcranial skeleton is characterized by two major transformations. First, the axial skeleton became increasingly functionally and morphologically regionalized. Second, the axial-based locomotion plesiomorphic for craniates became progressively appendage-based with the evolution of extremities in tetrapods.[well established][VHOG] UBERON:0002097 biolink:NamedThing skin of body The organ covering the body that consists of the dermis and epidermis. monarch-merged.owl entire integument|integumental organ|integument|pelt|skin organ|entire skin|skin OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA|NCIT:C12470|BTO:0001253|CALOHA:TS-0934|EHDAA2:0001844|XAO:0000023|EMAPA:17525|galen:Skin|MFMO:0000099|FMA:7163|Wikipedia:Skin|SCTID:181469002|EFO:0000962|MESH:D012867|UMLS:C1123023 consider 'integumentary system' for invertebrates http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg uberon owl:Class MA uses the term skin to refer to what is called here: zone of skin UBERON:0002098 biolink:NamedThing apex of heart The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]. monarch-merged.owl apex cordis|cardiac apex|heart apex UMLS:C0225811|Wikipedia:Apex_of_the_heart|MA:0000488|FMA:7164|NCIT:C32126|SCTID:362009004 http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png uberon owl:Class FMA also has terms for the apical zone UBERON:0002109 biolink:NamedThing pair of nares Pair of nostrils. monarch-merged.owl nares|nares set|set of nares|nostrils|pair of nostrils Wikipedia:Nares|FMA:72005|OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA uberon owl:Class this is a 'set of anatomical planes' in FMA UBERON:0002113 biolink:NamedThing kidney A paired organ of the urinary tract which has the production of urine as its primary function. monarch-merged.owl reniculate kidney GAID:423|MA:0000368|SCTID:181414000|EV:0100096|FMA:7203|UMLS:C0022646|AAO:0000250|EFO:0000929|MESH:D007668|XAO:0003267|galen:Kidney|MIAA:0000119|NCIT:C12415|MAT:0000119|CALOHA:TS-0510|Wikipedia:Kidney|BTO:0000671|OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA|EMAPA:17373 uberon owl:Class One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO] renal UBERON:0002149 biolink:NamedThing superior salivatory nucleus Nucleus containing parasympathetic neurons giving rise to the parasympathetic division of the facial nerve, innervating the salivary glands (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 703). monarch-merged.owl nucleus salivarius superior|nucleus salivatorius cranialis|superior salivary nucleus|nucleus salivatorius rostralis|nucleus salivatorius superior HBA:9194|BIRNLEX:1131|MBA:462|Wikipedia:Superior_salivatory_nucleus|DHBA:12435|EMAPA:37756|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=590|SCTID:369028007|EHDAA2:0004646|UMLS:C0175447|BAMS:SSN|BAMS:SuS|MA:0001027|FMA:72482 http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png uberon owl:Class UBERON:0002192 biolink:NamedThing ventricular system choroidal fissure The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]. monarch-merged.owl choroidal fissures|chorioidal fissure|ventricular system choroid fissure|lateral ventricle choroid fissure|choroid invagination|choroid fissure|choroidal fissure of lateral ventricle|choroidal fissure|chorioid fissure EHDAA2:0000250|EHDAA:7567|EMAPA:17548|TAO:0001075|MBA:116|VHOG:0001756|ZFA:0001075|BAMS:chfl|BAMS:chf|FMA:74512|FMA:83715|EMAPA:17768|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=24|NCIT:C32311|UMLS:C0262212|DHBA:12094 not to be confused with optic fissure. the choroidal fissure is a subarachnoid space (via subarachnoid fissure in FMA) relate to lateral ventricle? uberon owl:Class Most ontologies appear to have switched to using less confusing primary terms for optic and choroidal fissues. Still need to check FMA - two possible terms? CARO - is this a groove or a space or a line? UBERON:0002194 biolink:NamedThing capsule of lymph node Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. monarch-merged.owl lymph node capsule|capsula nodi lymphoidei EMAPA:35524|SCTID:327532004|UMLS:C0229699|Wikipedia:Lymph_node_capsule|NCIT:C33028|FMA:74604|MA:0000739 Lymphknoten:(Schwein).jpg uberon owl:Class from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP] UBERON:0002195 biolink:NamedThing trabecula of lymph node Membranous process coming from capsule of lymph node[WP]. monarch-merged.owl lymph node trabecula|lymph node trabeculum NCIT:C33035|MA:0000746|FMA:74605|Wikipedia:Lymph_node_trabeculae|UMLS:C1184179 http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray598.png uberon owl:Class UBERON:0002199 biolink:NamedThing integument The dermis, epidermis and hypodermis. monarch-merged.owl the integument|skin and subcutaneous tissue|skin plus hypodermis|integumentum commune|tegument|dermis plus epidermis plus hypodermis|Hautsystem@de|vertebrate integument|dermal system|skin|dermoid system EMAPA:37504|Wikipedia:Integument|ZFA:0000368|BTO:0000634|AAO:0000239|VSAO:0000029|TAO:0000368|galen:Integument|FMA:74657 in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates; consider 'integumental system'. Note that the VSAO class appears to include adnexa by its definition. uberon owl:Class Surface structure that is the outer protective covering of the body.[VSAO]|Anatomical system that protects the body from damage, comprising the skin and its appendages.[AAO]|The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO] integumental|integumentary UBERON:0002203 biolink:NamedThing vasculature of eye Vasculature that is part of the eye region. monarch-merged.owl ocular blood vessel|eye vascular network|eye vasculature|optic vasculature|vascular network of eye|ocular vasculature TAO:0007057|FMA:74743|ZFA:0007057|SCTID:123846009 uberon owl:Class not part of the eye in ZFA. Note this changed to a blood vessel in ZFA UBERON:0002204 biolink:NamedThing musculoskeletal system Anatomical system that consists of the muscular and skeletal systems. monarch-merged.owl musculo-skeletal system MESH:D009141|EMAPA:32714|GAID:98|VSAO:0000031|FMA:7482|SCTID:278858007|Wikipedia:Musculoskeletal_system|XAO:0000168|MA:0002418|CALOHA:TS-1311|VHOG:0001275|OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g|EV:0100139|NCIT:C12754|AAO:0010546|UMLS:C0026860 uberon owl:Class Anatomical system that provides locomotion and physical support to the organism.[AAO] There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG] musculoskeletal UBERON:0002205 biolink:NamedThing manubrium of sternum The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]. monarch-merged.owl manubrium|sternal manubrium|manubrium sterni|sternum rostrum|sternal rostrum|manubrium of sternum NCIT:C52730|MESH:D008371|EMAPA:18723|FMA:7486|SCTID:182014008|OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA|Wikipedia:Manubrium|GAID:247|MA:0001332|UMLS:C1710195 May be cartilage in some species. http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png uberon owl:Class UBERON:0002207 biolink:NamedThing xiphoid process A cartilaginous extension to the distal part of the sternum. monarch-merged.owl xiphoid process|xiphoideus|metasternum|processus xiphoideus|xiphisternum|xiphoid|xyphoid|xiphosternal junction|xiphoid process of sternum Wikipedia:Xiphoid_process|FMA:7488|NCIT:C33895|EMAPA:18725|MA:0001334|UMLS:C0043356|SCTID:272711000 this class may represent a mixed bony-cartilage element, or it may be the superclass of either purely cartilage or purely ossified elements http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray117.png uberon owl:Class usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. UBERON:0002213 biolink:NamedThing cartilaginous joint Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA].|Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA] monarch-merged.owl articulatio cartilaginea|junctura cartilaginea FMA:7496|EMAPA:36581|MA:0000320|Wikipedia:Cartilaginous_joint|SCTID:58442004|TAO:0005155|ZFA:0005155 uberon owl:Class UBERON:0002221 biolink:NamedThing fontanelle Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]. monarch-merged.owl fontanels|fonticuli cranii|fontanelles|fontanel MA:0001465|ZFA:0005536|FMA:75438|UMLS:C0224548|SCTID:272681004|TAO:0001738|NCIT:C32621|Wikipedia:Fontanelle http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png TODO - check uberon owl:Class Anatomical structure that is a membranous gap between bones of the skull.[TAO] UBERON:0002222 biolink:NamedThing perichondrium Fibrous connective tissue that surrounds cartilage. monarch-merged.owl perichondral region of cartilage|cartilage connective tissue|perichondral region of cartilage element XAO:0004049|Wikipedia:Perichondrium|MA:0003008|VSAO:0000036|BTO:0005089|EMAPA:35676|TAO:0001643|ZFA:0001634|AAO:0010445|SCTID:11881003|FMA:75446 uberon owl:Class Portion of connective tissue which surrounds cartilage.[TAO] UBERON:0002224 biolink:NamedThing thoracic cavity The part of the coelemic cavity lumen that is enclosed by the walls of the thorax. monarch-merged.owl cavitas thoracis|space of thoracic compartment|chest cavity|thoracic lumen|pectoral cavity|cavity of chest|cavity of thorax OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg|GAID:93|UMLS:C0230139|EMAPA:36497|FMA:7565|NCIT:C12905|SCTID:243949006|MESH:A01.911.800|OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA|MA:0000032|Wikipedia:Thoracic_cavity http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray846.png|http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg uberon owl:Class In many species, the diaphragm separates thoracic and abdominal cavities UBERON:0002225 biolink:NamedThing costal arch The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs, which in humans is from the eighth rib to the tenth rib. monarch-merged.owl subcostal arch|arcus costalis|costal margin|arcus costae UMLS:C0230143|FMA:7569|Wikipedia:Costal_margin|MA:0001396|EMAPA:37491|FMA:7570|SCTID:367767002|NCIT:C52715 http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png uberon owl:Class we treat margin and arch in FMA as equivalent here, as a temporary measure. This may be split in future. We follow MA in making this a part of the rib. UBERON:0002241 biolink:NamedThing chondrocranium Endoskeletal elements that encase the brain, nose, inner ear[cjm]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]. monarch-merged.owl calvarium|neurocranium EMAPA:17681|VHOG:0000288|AAO:0010169|Wikipedia:Chondrocranium|ZFA:0001424|EHDAA2:0000243|TAO:0001424 we follow the standard evolutionary classification and treat this as endoskeletal. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes parts of the dermatocranium (e.g. frontal, parietal) uberon owl:Class Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[TAO]|Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[AAO] chondrocranial covers the brain dorsally in chondrichthyans UBERON:0002247 biolink:NamedThing uterine horn Either one of the pair of tubular extensions from the uterine body where the uterus and the uterine tubes meet; uterine horns are anterior Mullerian duct-derived structures.|either one of the pair of tubular extensions from the uterine body where the uterus and the uterine tubes meet; uterine horns are anterior Mullerian duct-derived structures monarch-merged.owl cornu uteri EMAPA:18985|FMA:77053|Wikipedia:Uterine_horns|MA:0000393|BTO:0004235|SCTID:245480007 http://upload.wikimedia.org/wikipedia/commons/2/27/Illu_female_pelvis.jpg uberon owl:Class The uterine horns are far more prominent in other animals than they are in humans UBERON:0002263 biolink:NamedThing lentiform nucleus The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]. monarch-merged.owl nucleus lentiformis|nucleus lenticularis|lenticular nucleus UMLS:C0162342|FMA:77615|NCIT:C32977|SCTID:279319002|EMAPA:18208|MA:0000896|BTO:0002250|Wikipedia:Lentiform_nucleus|OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1234|EMAPA:19147|EV:0100186 http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray741.png TODO - add parts uberon owl:Class the EMAPA class is unclear UBERON:0002268 biolink:NamedThing olfactory organ An organ that houses olfactory neurons and is responsible for the sense of smell. Examples include the vertebrate nose and the Drosophila dorsal organ. monarch-merged.owl olfactory organ|organum olfactorium|organ olfactus|primary olfactory organ|olfactory sense organ|olfactory sensory organ|main olfactory organ|olfactory neuroepithelium FMA:77659|FBbt:00005158|VHOG:0000287|BTO:0001772|AAO:0010180|XAO:0000273 An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint uberon owl:Class fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint UBERON:0002277 biolink:NamedThing spiral sulcus A concavity in the floor of the cochlear duct, formed by either the overhanging vestibular lip (inner spiral sulcus) or the spiral prominence and the spiral organ (outer spiral sulcus). monarch-merged.owl sulcus spiralis FMA:77744|EMAPA:35800|MA:0001195 uberon owl:Class UBERON:0002278 biolink:NamedThing perilymphatic space The fluid-filled space separating the membranous from the osseous labyrinth. monarch-merged.owl cisterna perilymphatica|Retzius space|spatium perilymphaticum ZFA:0005459|SCTID:362576001|Wikipedia:Perilymphatic_space|FMA:77745|BTO:0002083 uberon owl:Class UBERON:0002287 biolink:NamedThing optic recess of third ventricle Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis. monarch-merged.owl supraoptic recess|recessus supraopticus|recessus opticus|optic recess|preoptic recess|optic recesses|recessus praeopticus EHDAA:1973|Wikipedia:Optic_recess|FMA:78455|BAMS:ORe|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=457|EMAPA:16902|VHOG:0000595|EHDAA:3478|TAO:0000049|SCTID:369279008|EHDAA:1343|ZFA:0000049|EHDAA:2649|NLX:144280|EHDAA2:0001317 http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray721.png TODO - check taxonomic grouping uberon owl:Class At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted][Wikipedia:Optic_recess].|The optic recess of the third ventricle, i.e. the pouch of the ventricle penetrating into the interval between the initial optic tracts. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] UBERON:0002294 biolink:NamedThing biliary system Organ system subdivision that consists of the organs and ducts that are involved in the production and transportation of bile. In most species this is the gallbladder and the bile ducts (biliary tree). monarch-merged.owl biliary apparatus|biliary tract FMA:79646|MESH:D001659|SCTID:361354009|MA:0001273|NCIT:C12678|Wikipedia:Biliary_system|GAID:279 http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png uberon owl:Class UBERON:0002298 biolink:NamedThing brainstem Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]. monarch-merged.owl lamella pallidi incompleta|truncus encephali|accessory medullary lamina of pallidum|brain stem|lamina pallidi incompleta|lamina medullaris accessoria|truncus encephalicus|lamina medullaris incompleta pallidi BAMS:BS|CALOHA:TS-0093|UMLS:C0006121|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236|EV:0100241|BTO:0000146|FMA:79876|EFO:0001962|ZFA:0001707|EMAPA:32678|NCIT:C12441|BIRNLEX:1565|TAO:0002156|MA:0000169|MBA:343|Wikipedia:Brainstem|MESH:D001933|VHOG:0001457|SCTID:180925009 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png uberon owl:Class Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.[TAO]|the stalk-like part of the brain that comprises the midbrain (aka mesencephalon), the pons (aka pons Varolii), and the medulla oblongata, and connects the cerebral hemispheres with the cervical spinal cord[MP]|Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted][ZFA:0001707]. UBERON:0002323 biolink:NamedThing coelemic cavity lumen The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities. monarch-merged.owl body cavity|celom|coelomic cavity|ventral body cavity|main body cavity|hemocoel|coelom|space of body compartment|coelomic cavity lumen|coelome SCTID:361348008|ZFA:0001438|FMA:85006|RETIRED_EHDAA2:0003186|FBbt:00005060|galen:BodyCavity|EHDAA2:0000267|TAO:0001438|BTO:0001707|NCIT:C25444|AEO:0000186|UMLS:C0333343 check the FMA placement here; ncit placement of body cavity here probably not correct UBERON:0000169 uberon owl:Class The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities[BTO].|Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]. In mammals it forms the peritoneal, pleural, and pericardial cavities UBERON:0002329 biolink:NamedThing somite Somites are spheres of epithelial cells that form sequentially along the anterior-posterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm. monarch-merged.owl epimere mesoderm|somites|somitic mesoderm|mesodermal cluster|epithelial somite|epimere|somitus TAO:0000155|UMLS:C0376449|BTO:0001558|MAT:0000068|AAO:0010569|MESH:A16.254.425.660.750|EHDAA:699|EMAPA:31169|MIAA:0000068|VHOG:0000191|XAO:0000058|GAID:1306|AEO:0001015|Wikipedia:Somite|NCIT:C34302|EHDAA2:0003436|FMA:85522|ZFA:0000155|EHDAA:366 When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248] http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png currently classified as an epithelial vesicle, consistent with EHDAA2 and https://github.com/obophenotype/uberon/wiki/The-neural-crest. Consider making 'somitic mesoderm' a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk uberon owl:Class Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995.[TAO]|Post-cranial axial segments which form sclerotome and dermomyotome.[AAO] relationship type change: OBO_REL:part_of trunk (TAO:0001115) CHANGED TO: develops_from trunk (UBERON:0002100)[TAO]|relationship type change: part_of paraxial mesoderm (AAO:0010568) CHANGED TO: develops_from paraxial mesoderm (UBERON:0003077)[AAO]|relationship loss: develops_from paraxial mesenchyme (TAO:0000942)[TAO] (...) cephalocordates and craniates belong to a group known as Somitichordata. Somitichordate synapomorphies include (1) somites (...) (reference 1); The idea that the last common ancestor of bilaterian animals (Urbilateria) was segmented has been raised recently on evidence coming from comparative molecular embryology (reference 2).[well established][VHOG] somitic UBERON:0002337 biolink:NamedThing endometrial stroma The layer of connective tissue comprised of the endometrial lining of the uterus which fluctuates in thickness throughout the menstrual cycle. monarch-merged.owl stroma of endometrium|endometrium stroma FMA:86487|NCIT:C32516|MA:0002734|UMLS:C0227849|CALOHA:TS-1266|EMAPA:35310|SCTID:254115004 uberon owl:Class UBERON:0002359 biolink:NamedThing fibrous pericardium Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]|Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]. monarch-merged.owl pericardium fibrosum|fibrous portion of pericardium FMA:9586|EMAPA:19029|SCTID:243953008|Wikipedia:Fibrous_pericardium|MA:0002738 uberon owl:Class most superficial part of pericardium; continuous with the outer adventitial layer of the neighboring great blood vessels. [Wikipedia:Pericardium] UBERON:0002391 biolink:NamedThing lymph Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system through lymph capillaries[WP]. monarch-merged.owl lympha GAID:1186|galen:Lymph|OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA|ZFA:0005658|ENVO:02000041|EV:0100049|CALOHA:TS-0580|BTO:0000855|FMA:9671|UMLS:C0024202|MAT:0000055|VHOG:0001590|EFO:0000871|NCIT:C13252|MIAA:0000055|Wikipedia:Lymph|MA:0002520|MESH:A12.207.630 http://upload.wikimedia.org/wikipedia/commons/1/19/Illu_lymph_capillary.png uberon owl:Class UBERON:0002402 biolink:NamedThing pleural cavity The fluid-filled cavity that lies between the visceral and parietal pleurae. monarch-merged.owl cavitum pleuralae|cavitum pleurale|cavitas pleuralis VHOG:0000581|UMLS:C0178802|MA:0000055|FMA:9740|OpenCyc:Mx4rwCKAppwpEbGdrcN5Y29ycA|BTO:0004422|EMAPA:16773|GAID:95|SCTID:361999006|EMAPA:16774|NCIT:C12840|EHDAA2:0001475|Wikipedia:Pleural_cavity|MESH:A01.911.800.650 http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png uberon owl:Class In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] The contraction of the diaphragm creates a negative pressure within the pleural cavity which forces the lungs to expand resulting in passive exhalation and active inhalation. This breathing process can be made forceful through the contraction of the external intercostal muscles which forces the rib cage to expand and add to the negative pressure in the pleural cavity causing the lungs to fill with air. The fluid in the cavity provides lubrication and cushioning the EHDAA2 class of the same is not equivalent. See https://github.com/obophenotype/uberon/issues/86 UBERON:0002407 biolink:NamedThing pericardium The combination of pericardial sac (a double-walled sac containing the heart and the roots of the great vessels) plus fibrous pericardium. monarch-merged.owl VHOG:0001280|BTO:0000717|TAO:0000054|CALOHA:TS-0761|BSA:0000090|EHDAA:5376|Wikipedia:Pericardium|EV:0100023|OpenCyc:Mx4rvoCLgJwpEbGdrcN5Y29ycA|UMLS:C0031050|RETIRED_EHDAA2:0001443|MESH:D010496|MA:0000099|XAO:0004182|FMA:9869|ZFA:0000054|EFO:0000820|GAID:569|MAT:0000454|EMAPA:16133|SCTID:181295003|galen:Pericardium|NCIT:C13005|AAO:0010817 http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png uberon owl:Class Peritoneum that surrounds the heart.[AAO] pericardial we follow FMA in dividing pericardium into pericardial sac and fibrous pericardium|this class denotes a combination of fibrous PC + PC sac (itself a combination of cavity, epithelium and connective tissue). Many sources use the term 'pericardium' to denote either just the serous membrane (ZFA) or the epithelium (GO)|In GO the concept of pericardium is developmental implicitly epithelial, but here it represents a multi-tissue structure encompassing the sac (epithelium plus connective) and cavity UBERON:0002410 biolink:NamedThing autonomic nervous system The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]. monarch-merged.owl divisio autonomica systematis nervosi peripherici|ANS|pars autonomica systematis nervosi peripherici|peripheral autonomic nervous system|autonomic division of peripheral nervous system|autonomic part of peripheral nervous system|visceral nervous system EHDA:10095|EHDAA:3767|UMLS:C0004388|NCIT:C12673|CALOHA:TS-2001|MA:0000219|BTO:0002507|UMLS:C1305381|EMAPA:16984|FMA:65553|TAO:0001574|MESH:D001341|SCTID:362481007|Wikipedia:Autonomic_nervous_system|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2054|GAID:706|ZFA:0001574|AAO:0000033|BIRNLEX:1123|VHOG:0000396|EHDAA2:0000158 http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png uberon owl:Class Nervous system including a portion of the central and peripheral systems and presiding over the control and coordination of the vegetative functions of the organism. It innervates smooth and cardiac muscles and glandular tissues and is responsible for many actions which are more or less automatic (e.g. secretion, vasoconstriction etc.). It consists of the sympathetic and parasympathetic nervous systems. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]|Part of the peripheral nervous system which regulates involuntary functions of the body and consists of the sympathetic and parasympathetic system.[AAO] From comparative analyses of craniate brains, a morphotype of the brain in the earliest craniate stock can be constructed. In marked contrast to cephalochordates, the ancestral craniate morphotype had a plethora of unique features, which included a telencephalon with pallial and subpallial parts, paired olfactory bulbs with substantial projections to most or all of the telencephalic pallium, paired lateral eyes and ears, a lateral line system for both electroreception and mechanoreception, spinal cord dorsal root ganglia, and an autonomic nervous system.[well established][VHOG] FMA splits this into peripheral and nervous parts; GO has ANS directly under NS; PNS is a sib UBERON:0002416 biolink:NamedThing integumental system Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle. monarch-merged.owl organism surface|surface|body surface|integumentary system|integumentum commune|dermal system|external covering of organism EV:0100151|TADS:0000108|BILA:0000118|UMLS:C0037267|AEO:0000154|Wikipedia:Integumentary_system|SCTID:361692004|VHOG:0000403|MA:0000014|EMAPA:17524|MAT:0000033|galen:Surface|CALOHA:TS-1299|MIAA:0000033|EFO:0000807|FBbt:00004969|MESH:D034582|FMA:72979|CARO:0002001|NCIT:C12907|EHDAA:6520|XAO:0000176|EHDAA2_RETIRED:0003154|EHDAA2:0000836|HAO:0000421 UBERON:0007029 uberon owl:Class (...) the integument of many tetrapods is reinforced by a morphologically and structurally diverse assemblage of skeletal elements. These elements are widely understood to be derivatives of the once all-encompassing dermal skeleton of stem-gnathostomes (...).[well established][VHOG] UBERON:0002423 biolink:NamedThing hepatobiliary system The part of the digestive system that contains the liver and the biliary system|The part of the digestive system that contains the liver and the biliary system. monarch-merged.owl hepaticobiliary system|liver and biliary system|liver/biliary system ZFA:0000036|Wikipedia:Hepatobiliary_system|EMAPA:16840|MAT:0000024|EFO:0000800|TAO:0000036|AAO:0011056|CALOHA:TS-1308|NCIT:C43612|MA:0000324|MIAA:0000024|EHDAA:2189|XAO:0000132|UMLS:C1711359|EV:0100088|EHDAA2:0000998|VHOG:0000294 uberon owl:Class System responsible for the production and movement of bile[ZFIN:curator]. The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct [GO:0061008] UBERON:0002469 biolink:NamedThing esophagus mucosa A mucosa that is part of a esophagus [Automatically generated definition]. monarch-merged.owl mucous membrane of esophagus|mucous membrane of oesophagus|mucosa of oesophagus|oesophagus mucous membrane|esophagus mucous membrane|tunica mucosa oesophagi|esophageal mucosa|esophageal mucous membrane|oesophageal mucosa|lamina muscularis mucosae oesophageae|tunica mucosa esophagi|oesophagus mucosa|mucosa of esophagus|muscularis mucosae of oesophagus|esophagus mucosa|tunica mucosa oesophageae NCIT:C32538|UMLS:C0227176|SCTID:362127004|MA:0002680|BTO:0002859|FMA:62996|EMAPA:26981 UBERON:0003345 uberon owl:Class UBERON:0002484 biolink:NamedThing bone marrow cavity The medullary cavities of the bones where bone marrow is stored. monarch-merged.owl medullary cavity|marrow cavity|cavity of cancellous bone MA:0002783|Wikipedia:Bone_marrow_of_ovaryry_cavity|FMA:75147|FMA:83698 uberon owl:Class Located in the main shaft (cortical bone) of a long bone (diaphysis) (consisting mostly of compact bone), the medullary cavity has walls composed of spongy bone (cancellous bone) and is lined with a thin, vascular membrane (endosteum)[Wikipedia:Bone_marrow_of_ovaryry_cavity] not clear if the FMA intends to have two classes. MP:0000065: 'the medullary cavities of the bones.'. NCITA also has 'medullary bone' UBERON:0002486 biolink:NamedThing glottis the vocal apparatus of the larynx, which includes the vocal cords and the opening between them|The vocal apparatus of the larynx, which includes the vocal cords and the opening between them. monarch-merged.owl SCTID:264482000|FMA:55414|BTO:0001627|GAID:343|MA:0002788|AAO:0010610|MESH:D005931|Wikipedia:Glottis|NCIT:C12724|UMLS:C0017681 Arytenoid:cartilage.png uberon owl:Class A small, slit-like aperture lying longitudinally on the floor of the pharynx.[AAO] UBERON:0002487 biolink:NamedThing tooth cavity The central hollow space of a tooth. monarch-merged.owl cavity of tooth|pulp cavity of tooth|lumen of tooth|cavitas dentis|pulp cavity|cavitas pulparis|tooth pulp cavity MESH:A14.254.900.265|MA:0002792|Wikipedia:Tooth_cavity|FMA:55660|SCTID:362105008 uberon owl:Class UBERON:0002501 biolink:NamedThing oval window The oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes. monarch-merged.owl vestibular window|oval window of petrous part of temporal bone|fenestra vestibuli|fenestra ovalis FMA:56913|SCTID:362561009|MA:0002813|EMAPA:19240|MESH:D010046|Wikipedia:Oval_window|NCIT:C32593|GAID:882 http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png uberon owl:Class UBERON:0002502 biolink:NamedThing round window of inner ear The opening on the medial wall of the middle ear leading into the cochlea, closed in life by the secondary tympanic membrane; serves to regulate fluid pressure in the inner ear. monarch-merged.owl fenestra rotunda|fenestra cochleae|round window|cochlear window|round window of petrous part of temporal bone MESH:D012405|GAID:878|FMA:56932|Wikipedia:Round_window|MA:0002814|EMAPA:19239|SCTID:279785002|NCIT:C32594 http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png uberon owl:Class UBERON:0002513 biolink:NamedThing endochondral bone Replacement bone that forms within cartilage. monarch-merged.owl endochondral bones|ossified chondrogenic bone|cartilaginous bone VSAO:0000145|TAO:0001591|BTO:0002157|AEO:0000083|AAO:0010776|ZFA:0001591|XAO:0004018|EHDAA2:0003083|FMA:24321 http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg placement in this class to be inferred uberon https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern owl:Class Replacement bone that forms within cartilage.[VSAO] some structures, e.g. in ZFA are both intramembrane and endochondral UBERON:0002517 biolink:NamedThing basicranium The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof. monarch-merged.owl cranial base|basis cranii|base of skull|base of cranium MFMO:0000044|FMA:52801|MA:0002840|UMLS:C0149543|NCIT:C12493|MESH:D019291|SCTID:181890004|Wikipedia:Base_of_skull The skull base is formed from a series of cartilages either side of, and rostral to, the notochord, whose tip lies just caudal to the pituitary gland. It is closely associated with the sensory capsules, which partially or completely sur- round the olfactory epithelium, the eye, and the inner ear[PMID:11523816] http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png uberon owl:Class basicranial UBERON:0002522 biolink:NamedThing tunica media The middle layer of an artery or vein. [WP,unvetted]. monarch-merged.owl tunica media vasorum MESH:D017540|GAID:170|Wikipedia:Tunica_media|FMA:55590|MA:0002855|NCIT:C33821|UMLS:C0162867|SCTID:61695000|BTO:0002011|EMAPA:36298 May be composed of smooth muscle and elastic tissue Illu:artery.jpg uberon owl:Class UBERON:0002523 biolink:NamedThing tunica intima The innermost layer of a blood vessel which is a lining of endothelial cells facing the lumen[Kardong]. monarch-merged.owl Bichat's tunic|tunica intima vasorum|intima MA:0002861|NCIT:C33820|MESH:D017539|EMAPA:36297|Wikipedia:Tunica_intima|GAID:523|SCTID:8361002|FMA:55589|BTO:0002012|UMLS:C0162864|SCTID:87483006 Illu:artery.jpg the FMA class represents a structure which may have both epithelium and fibroelastic connective tissue as parts|the FMA class represents a more generic layer which is the superclass of the layer found in both blood vessels and lymph vessels (and also endocardium) - we should probably follow this structure uberon owl:Class The tunica intima (or just intima) is the innermost layer of an artery or vein. It is made up of one layer of endothelial cells and is supported by an internal elastic lamina. The endothelial cells are in direct contact with the blood flow. The inner coat (tunica intima) can be separated from the middle by a little maceration, or it may be stripped off in small pieces; but, on account of its friability, it cannot be separated as a complete membrane. It is a fine, transparent, colorless structure which is highly elastic, and, after death, is commonly corrugated into longitudinal wrinkles. The inner coat consists of: A layer of pavement endothelium, the cells of which are polygonal, oval, or fusiform, and have very distinct round or oval nuclei. This endothelium is brought into view most distinctly by staining with silver nitrate. A subendothelial layer, consisting of delicate connective tissue with branched cells lying in the interspaces of the tissue; in arteries of less than 2 mm. in diameter the subendothelial layer consists of a single stratum of stellate cells, and the connective tissue is only largely developed in vessels of a considerable size. An elastic or fenestrated layer, which consists of a membrane containing a net-work of elastic fibers, having principally a longitudinal direction, and in which, under the microscope, small elongated apertures or perforations may be seen, giving it a fenestrated appearance. It was therefore called by Henle the fenestrated membrane. This membrane forms the chief thickness of the inner coat, and can be separated into several layers, some of which present the appearance of a network of longitudinal elastic fibers, and others a more membranous character, marked by pale lines having a longitudinal direction. In minute arteries the fenestrated membrane is a very thin layer; but in the larger arteries, and especially in the aorta, it has a very considerable thickness. [WP,unvetted].[Wikipedia] UBERON:0002536 biolink:NamedThing arthropod sensillum Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt].|Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt] monarch-merged.owl sensillum MAT:0000163|FBbt:00007152|HAO:0000933|EFO:0000939|Wikipedia:Sensillum|BTO:0001237|MIAA:0000163|TGMA:0000540 this term should be ceded to the arthropod anatomy ontology uberon owl:Class UBERON:0002538 biolink:NamedThing hatching gland The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. monarch-merged.owl hgg|frontal gland MAT:0000180|XAO:0000034|EFO:0000863|AAO:0011050|VHOG:0000078|ZFA:0000026|BTO:0000558|TAO:0000026|MIAA:0000180 uberon owl:Class A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995.[TAO] UBERON:0002541 biolink:NamedThing germ ring The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA]|The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA]. monarch-merged.owl AAO:0000211|TAO:0000111|ZFA:0000111|MIAA:0000255|EFO:0003427|MAT:0000255 TODO - check timing of appearance and disappearance - check relationship with primitive streak. he blastopore lips in amphibians appear to have the equivalent function of the germ ring in zebrafish (ES) uberon owl:Class Embryonic structure that forms as a thickened annulus at the blastoderm rim. The germ ring is thickened because it is the involuting margin of the blastoderm[ZFIN:ZDB-PUB-961014-576]. UBERON:0002561 biolink:NamedThing lumen of central nervous system The cavity that is enclosed by the central nervous system. In vertebrates this is the cavity that includes as parts ventricular cavities and the central canal of the spinal cord that develops from the lumen of the neura tube.|The cavity that is enclosed by the central nervous system. In vertebrates this is the cavity that includes as parts ventricular cavities and the central canal of the spinal cord that develops from the lumen of the neura tube monarch-merged.owl cavity of ventricular system of neuraxis|neuraxis lumen|neuraxis cavity|cavity of neuraxis BIRNLEX:1029|FMA:75007 uberon owl:Class UBERON:0002623 biolink:NamedThing cerebral peduncle Synonym for macrodissected adult human tegmentum (Vicq d'Azyr, 1784; Swanson, 2000); pp. 555-556. Later used thus by for example His (1893b, p. 178), Herrick (1915, p. 160), Strong & Elwyn (1943, p. 17), Carpenter (1976, p. 367), Williams & Warwick (1980, p. 935). monarch-merged.owl peduncle of midbrain|cerebral peduncle|cerebral peduncle (archaic)|pedunculi cerebri|pedunculus cerebralis|CP|pedunculus cerebri|tegmentum|cerebal peduncle BIRNLEX:1202|EFO:0001987|MBA:924|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=487|UMLS:C0007793|SCTID:362391000|BAMS:cpd|BTO:0004676|NCIT:C32291|FMA:62394|Wikipedia:Cerebral_peduncle|BM:CP Neuronames includes the substantia nigra, crus cerebri and midbrain tegmentum as substructures of the cerebral peduncle; the mouse atlases only include the crus cerebri as the cerebral peduncle (MM) http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray689.png uberon owl:Class UBERON:0002698 biolink:NamedThing preoccipital notch Small indentation on the inferior surface of the cerebral cortex at the border of the occiptal and parietal lobes. It is considered as a landmark because the occipital lobe is located just behind the line that connects that notch with the parietoccipital sulcus (adapted from Wikipedia). monarch-merged.owl incisura praeoccipitalis|incisura parieto-occipitalis|PON|occipital notch|preoccipital incisure|incisura preoccipitalis|preoccipital incisura BIRNLEX:1436|HBA:9387|UMLS:C0228192|SCTID:369229005|BAMS:pon|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=54|Wikipedia:Preoccipital_notch|FMA:83739|DHBA:10645 uberon owl:Class UBERON:0002823 biolink:NamedThing clivus of fovea centralis monarch-merged.owl fovea centralis clivus|clivus of macula lutea BIRNLEX:2544|UMLS:C0929757|FMA:58674|UMLS:C0929760 NIF differs from FMA uberon owl:Class UBERON:0002870 biolink:NamedThing dorsal motor nucleus of vagus nerve A cranial nerve nucleus for the vagus nerve in the medulla that lies under the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. The cell bodies for the preganglionic parasympathetic vagal neurons that innervate the heart reside in the nucleus ambiguus.[WP,unvetted]. monarch-merged.owl dorsal vagal nucleus|dorsal motor nucleus of the vagus (vagal nucleus)|dorsal motor nucleus of vagus|nucleus vagalis dorsalis|dorsal motor vagal nucleus|nucleus alaris|dorsal motor nucleus|dorsal motor nucleus of vagus nerve|vagus nucleus|dorsal efferent nucleus of vagus|nucleus dorsalis motorius nervi vagi|nucleus alaris (Oertel)|nucleus posterior nervi vagi|posterior nucleus of vagus nerve|dorsal motor nucleus of the vagus|dorsal motor nucleus of vagus X nerve|dorsal motor nucleus of the vagus nerve|dorsal nucleus of vagus nerve|dorsal nucleus of the vagus nerve|nucleus dorsalis nervi vagi http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=755|NCIT:C32475|MA:0001036|BAMS:10|MBA:839|FMA:54592|UMLS:C0152401|HBA:9545|SCTID:52884007|BAMS:DMX|EV:0100287|UMLS:C0926535|BM:DX|CALOHA:TS-2381|EHDAA2:0004649|Wikipedia:Dorsal_nucleus_of_vagus_nerve|EMAPA:35291|BIRNLEX:2642|DHBA:12550 http://upload.wikimedia.org/wikipedia/commons/8/82/Gray697.png uberon owl:Class The FMA includes a separate sensoryt nucleus UBERON:0002872 biolink:NamedThing inferior salivatory nucleus In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]. monarch-merged.owl nucleus salivatorius inferior nervi glossopharyngei|inferior salivary nucleus|inferior salivatary nucleus|nucleus salivatorius caudalis|nucleus salivatorius inferior|nucleus salivarius inferior BIRNLEX:2645|BAMS:IS|DHBA:12544|MBA:106|HBA:9569|FMA:72601|UMLS:C0175534|BAMS:ISN|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=764|Wikipedia:Inferior_salivatory_nucleus|EHDAA2:0004641 http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray843.png uberon owl:Class UBERON:0002956 biolink:NamedThing granular layer of cerebellar cortex The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer. monarch-merged.owl cerebellar granule cell layer|granule cell layer of cerebellar cortex|cerebellum granule cell layer|cerebellum granule layer|cerebellar granular layer|cerebellar granule layer|stratum granulosum cerebelli|granular layer of cerebellum|stratum granulosum corticis cerebelli UMLS:C1708253|MBA:1143|FMA:83140|BTO:0004425|MA:0000993|NCIT:C49138|BIRNLEX:779|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=363|EMAPA:35217|CALOHA:TS-1247 uberon owl:Class UBERON:0002974 biolink:NamedThing molecular layer of cerebellar cortex The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells.|The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells monarch-merged.owl thalamic fiber tracts|stratum moleculare corticis cerebelli|cerebellum molecular cell layer|fasciculi thalami|cerebellar molecular layer|cerebellum molecular layer SCTID:369045002|FMA:83897|BAMS:thf|UMLS:C0228469|BIRNLEX:810|CALOHA:TS-1248|MA:0000996|EMAPA:35221|UMLS:C1709064|UMLS:C1289474|NCIT:C49139|MBA:1144|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=366 revisit logical definition after using brain layer patterns uberon owl:Class Compare with ZFA:0000636 - cerebellar crest, which is also composed of parallel fibers but located in a more restricted nucleus within the cerebellum UBERON:0002979 biolink:NamedThing Purkinje cell layer of cerebellar cortex The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. monarch-merged.owl reticular nucleus thalamus (Arnold)|nucleus reticulatus (thalami)|nucleus reticularis|cerebellar Purkinje cell layer|cerebellum Purkinje cell layer|cerebellum Purkinje layer|nucleus thalamicus reticularis|nuclei reticulares (thalami)|Purkinje cell layer|reticulatum thalami (Hassler) UMLS:C1709776|SCTID:369046001|MA:0000997|EMAPA:35223|BTO:0004909|MBA:1145|FMA:83896|UMLS:C0228469|BIRNLEX:818|NCIT:C49140|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=365|UMLS:C1289475 uberon owl:Class UBERON:0003052 biolink:NamedThing midbrain-hindbrain boundary The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate. monarch-merged.owl isthmic organizer territory|mid-hindbrain junction|MHB|isthmus|isthmo-cerebellar region|midbrain hindbrain boundary|mid-hindbrain boundary|isthmus/MHB ZFA:0000042|XAO:0000016|AAO:0011064|EHDAA:5789|EMAPA:32857|NCIT:C93172|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2076|DMBA:16810|EHDAA2:0004395|VHOG:0000649|TAO:0000042 consider adding class for organizer. Consider adding separate class for isthmus as a structure uberon owl:Class Lampreys also have an MHB [midbrain hindbrain boundary], expressing a similar repertoire of regulatory gene cognates as in gnathostomes.[well established][VHOG] UBERON:0003053 biolink:NamedThing ventricular zone Proliferative region that is part of the ventricular system. monarch-merged.owl VZ|ventricular zones|ventricular zone of brain|brain ventricular zone EFO:0003624|AAO:0011112|ZFA:0001083|MA:0000819|TAO:0001083|EMAPA:32679|BTO:0003654|XAO:0000021|PBA:294022030|VHOG:0001224|DHBA:10542 uberon owl:Class There are two primary regions that are thought to give rise to neurons that make up the cerebellum. The first region is the ventricular zone (the roof of the fourth ventricle). This area produces Purkinje cells and deep cerebellar nuclear neurons[BTO:0003654].|Proliferative zone in the region of the neural tube adjacent to the lumen. in BTO this is restricted to the 4th ventricle - however this class also represents the early ventricular zone as well as its post-natal remnants. The MA class is named 'ventricular zone of brain' and is presumably restricted to the post-natal zone; DHBA class is forebrain; PBA class is neocortex; TAO/ZFA is neocortex UBERON:0003055 biolink:NamedThing periderm A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis. monarch-merged.owl EVL|epidermis outer layer|epidermis epithelial layer|skin periderm|epitrichium|periderm XAO:0000029|EHDAA2:0001846|FMA:295662|VHOG:0001680|UMLS:C1518973|TAO:0001185|ZFA:0001185|EHDAA:6538|NCIT:C34247 uberon owl:Class The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL. Le Guellec et al, 2004.[TAO] relationship type change: OBO_REL:part_of ectoderm (TAO:0000016) CHANGED TO: develops_from ectoderm (UBERON:0000924)[TAO] In mice, the first non-basal layer formed at ~E9.5; it is a temporary structure composed of simple squamous epithelium that serves as the first barrier to the embryo's physical environment, exists throughout the entire keratinocyte stratification process, and sheds off at ~E17, when it is replaced by corneocytes[MP] Originally the epidermis is one layer thick, in most vertebrates it soon becomes a two-layered structure. The outer layer gives rise to the periderm. The periderm goes through distinct developmental phases and is ultimately sloughed into the amniotic fluid when differentiation of the underlying epidermal layers is complete. The function of the periderm is not known, but is thought to be related to transport/exchange between the fetus and the amniotic fluid (http://courses.washington.edu/hubio567/devbio/periderm.html)|In some mammals, Eyelid Fusion is thought to be driven by a population of cells which are derived from the periderm, the outermost layer of the developing epidermis UBERON:0003057 biolink:NamedThing chordal neural plate The portion of neural plate posterior to the mid-hindbrain junction. monarch-merged.owl posterior neural plate ZFA:0007017|VHOG:0001201|TAO:0007017|XAO:0000046 uberon owl:Class (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] UBERON:0003058 biolink:NamedThing hypochord The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta[GO]. monarch-merged.owl subnotochordal rod|ipochord ZFA:0000031|AAO:0000733|VHOG:0000081|EFO:0003475|XAO:0000056|TAO:0000031 Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO] uberon owl:Class Unsegmented ventral structure in the caudal region of anuran larvae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO]|A transient rod-like structure which is endodermally derived and located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Eriksson and Lofberg, 2000.[TAO] In other words, we identified variations in gene expression patterns that may contribute to a molecular basis of evolutionary variation of axial structures between Teleostei and Mammalia in the determination of body axis. As already mentioned, one such difference is illustrated by the hypochord present in lower vertebrates but absent in higher animals. Perhaps, Tbx-b and Tbx-c are involved in the mechanisms underlying the formation of this organ that were lost during later evolution leading to the disappearance of the hypochord itself, similarly to other organs, such as the lateral line.[uncertain][VHOG] UBERON:0003061 biolink:NamedThing blood island Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP, unvetted]. monarch-merged.owl ventral lateral plate mesoderm|posterior blood island|caudal hematopoietic tissue|ventral blood island|VBI|posterior ICM|blood islands TAO:0000094|Wikipedia:Blood_island_of_umbilical_vesicle|XAO:0000067|AAO:0011006|NCIT:C34113|TE:E5.11.2.0.0.0.4|EFO:0003489|EHDAA:207|ZFA:0000094|UMLS:C1511224|VHOG:0000085 uberon owl:Class Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. Kimmel et al, 1995.[TAO]|Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates.[AAO] relationship loss: part_of intermediate cell mass of mesoderm (TAO:0000033)[TAO] Small clusters of mesodermal cells called blood islands mark the embryonic debut of the cardiovascular system (in vertebrates) (reference 1); In birds and mammals, primitive hemangioblasts are extraembryonic, populating the yolk sac as the so-called blood islands (reference 2).[well established][VHOG] EHDAA2 distinguishes 3 types, but does not have a superclass. The VHOG class may refer to yolk sac UBERON:0003062 biolink:NamedThing primitive knot Organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP].|organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]. monarch-merged.owl embryonic shield|shield|Hensen's node|DMZ|Hensen node|Spemann's organizer|embryonic organizer|organizer|dorsal marginal zone|Henson's node|nodus primitivus|primitive node|node|embryo organizer|Spemann Mangold organizer EHDAA2:0001272|AAO:0000346|GAID:1312|TAO:0000071|SCTID:361464001|BTO:0003395|UMLS:C1283999|FMA:293116|EMAPA:16075|BILA:0000053|Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer|XAO:0000072|MESH:A16.254.650|VHOG:0000598|ZFA:0000071|NCIT:C34266|EHDAA:549 This class groups together possibly disparate structures, following homology class in vHOG; early development terms need review UBERON:0004018 uberon owl:Class A signaling center that directs the development of the whole embryo or of part of the embryo.[AAO]|Embryonic structure that is a local accumulation of cells along the germ ring. The shield marks the dorsal side of the embryo[ZFIN:ZDB-PUB-961014-576]. The organizer is a central feature of vertebrate embryogenesis. It was first characterized in functional terms in amphibians by Spemann and Mangold (1924), and homologous tissues have since been identified in representatives of most other vertebrate classes, including mammals (the node), birds (Henson's node) and teleost fish (the embryonic shield).[well established][VHOG] UBERON:0003063 biolink:NamedThing prechordal plate A horseshoe-shaped thickening of the endoderm at the cranial (rostral) end of the primitive streak formed by the involution of Spemann's organizer cells which, together with the notochord, induces the formation of the neural plate from the overlying ectodermal cells and contributes mesodermal type cells to the surrounding tissue|A horseshoe-shaped thickening of the endoderm at the cranial (rostral) end of the primitive streak formed by the involution of Spemann's organizer cells which, together with the notochord, induces the formation of the neural plate from the overlying ectodermal cells and contributes mesodermal type cells to the surrounding tissue. monarch-merged.owl head mesoderm|head mesenchyme AAO:0011085|ZFA:0000060|Wikipedia:Prechordal_plate|TAO:0000060|XAO:0000079|FMA:295532|VHOG:0000086|EHDAA2:0001493|EHDAA:181 TODO - check; developmental relationship to anterior hypoblast in ZFA? UBERON:0004881 uberon owl:Class Axial mesoderm that lies anterior to the notochord and that underlies the forebrain. [Amphioxus_goosecoid_and_the_evolution_of_the_head_organizer_and_prechordal_plate._Evolution_and_Development_(2008)_2(6):303-310, Neidert_AH, Panopoulou_G_and_Langeland_JA][VHOG]|Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. Kimmel et al, 1995.[TAO] There are two opposing models that can potentially explain the differences in gsc (goosecoid) expression between amphioxus and vertebrates. In one model, the vertebrate gsc expression pattern more closely resembles the common ancestral state and the amphioxus gsc expression pattern is a derivation associated with its unique morphology. (...) In an alternate model, the amphioxus gsc expression pattern most closely represents the common ancestral state and the vertebrate pattern is derived. This model suggests that the evolution of vertebrates was accompanied by the segregation of gsc expression, from a more general domain underlying the entire brain anlage to a distinct forebrain organizer domain and subsequent prechordal plate. We feel this second model is more parsimonious than the first model in that what would be novel anterior gsc expression in vertebrates directly correlates with a novel vertebrate anterior structure, the prechordal plate.[well established][VHOG] UBERON:0003064 biolink:NamedThing intermediate mesoderm The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads. monarch-merged.owl intermediate plate mesoderm|mesenchyma intermedium|intermediate plate|intermediate mesenchyme|IM EMAPA:16056|TAO:0001206|UMLS:C1284010|Wikipedia:Intermediate_mesoderm|NCIT:C34193|FMA:293147|EMAPA:16178|AAO:0010575|ZFA:0001206|VHOG:0000087|SCTID:361476001|XAO:0000085 http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png uberon owl:Class Mesoderm between somite and lateral plate. Traditionally thought to give rise to the urogenital system.[AAO] (...)the mesoderm of a developing vertebrate transitionally differentiates into the following sub-types: Chordamesoderm (also known as axial mesoderm) which later on gives rise to notochord in all chordates, Paraxial mesoderm, Intermediate mesoderm, Lateral plate mesoderm (reference 1); The mesoderm is present in Bilateria, therefore they are sometimes called triploblasts. Ectoderm and endoderm are usually organized as epithelial layers, while mesoderm can be epithelial or a compact, three-dimensional tissue.[well established][VHOG] all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). UBERON:0003068 biolink:NamedThing axial mesoderm The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord. monarch-merged.owl chordamesoderm TAO:0001204|ZFA:0001204|VHOG:0000107|AAO:0011017|Wikipedia:Chordamesoderm|EFO:0003647|XAO:0000205 http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png uberon owl:Class The portion of the mesoderm underlying the midline of the embryo. [Gastrulation:_From_cells_to_embryo_(2004)_Cold_Spring_Harbor, Glossary_XV, New_York:_Cold_Spring_Harbor_Laboratory_Press, Stern_CD][VHOG] UBERON:0003076 biolink:NamedThing posterior neural tube monarch-merged.owl ZFA:0007037|XAO:0000250|AAO:0011082|VHOG:0001383|TAO:0007037 uberon owl:Class (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] UBERON:0003077 biolink:NamedThing paraxial mesoderm The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]|The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]. monarch-merged.owl paraxial mesenchyme|mesoderma paraxiale|somitic mesoderm Wikipedia:Paraxial_mesoderm|ZFA:0000255|SCTID:361475002|EMAPA:16751|NCIT:C34244|XAO:0000259|FMA:293145|TAO:0000255|EMAPA:16183|UMLS:C1284009|EFO:0003515|VHOG:0000114|AAO:0010568 http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png uberon owl:Class Mesoderm lateral to the neural tube and notochord that is divided into cranial and post-cranial portions. The trunk portions further segment into somites.[AAO] Presently, Cephalochordata, Urochordata, and Vertebrata are placed as subphyla of the phylum Chordata, in which the overall organization of embryonic tissues (dorsal hollow nerve cord, ventral digestive tract, axial notochord, and bilateral paraxial mesoderm) is largely conserved. In contrast, the echinoderms and hemichordates are sister groups of the chordates and they lack the notochord and paraxial mesoderm. Thus, the basic mesodermal organization of vertebrates must have appeared first in the common ancestor of the chordates.[well established][VHOG] note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). Also in ZFA it is part of the trunk whereas this conflicts with the division into head and trunk in ehdaa2 (which we follow here) UBERON:0003080 biolink:NamedThing anterior neural tube monarch-merged.owl VHOG:0001384|XAO:0000307|ZFA:0007038|AAO:0011012|TAO:0007038 TODO - add grouping class for the anterior end of the neural tube at all stages uberon owl:Class (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] UBERON:0003082 biolink:NamedThing myotome A transitional population of migrating mesenchymal cells that derive from somites and that will become muscle cells. monarch-merged.owl muscle plate|myotomes|myomere|myotomus|myotome region|myomeres AEO:0001018|Wikipedia:Myotome|VHOG:0001244|XAO:0000315|EHDAA:1739|EHDAA:1733|TAO:0001056|BTO:0000742|AAO:0011067|EHDAA:1721|FMA:295658|EHDAA:1727|SCTID:344535001|UMLS:C1513802|ZFA:0001056|NCIT:C34214|EMAPA:32841|EHDAA2_RETIRED:0003431 http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png The term 'myotome' is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class, myomere. uberon owl:Class Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO] In all vertebrates, the skeletal muscle of the body axis is chiefly derived from an early embryonic compartment, known as the myotome.[well established][VHOG] UBERON:0003084 biolink:NamedThing heart primordium Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone. monarch-merged.owl fused heart primordium|cardiac field ZFA:0000028|XAO:0000336|UMLS:C1514450|AAO:0011044|NCIT:C34276|BTO:0001887|TAO:0000028 should probably be merged with heart rudiment. uberon owl:Class The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO]|Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO] relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO] UBERON:0003089 biolink:NamedThing sclerotome Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]. monarch-merged.owl sclerotomes|sclerotomus UMLS:C0183176|FMA:295652|AEO:0000212|NCIT:C34287|TAO:0001080|XAO:0000397|EMAPA:31159|AAO:0010571|ZFA:0001080|VHOG:0000680|Wikipedia:Sclerotome|EHDAA2:0003439 http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png uberon owl:Class Skeletogenic portion of somites.[AAO] The vertebrate sclerotome has no equivalent in amphioxus and is a novelty linked with the evolution of the axial skeleton.[well established][VHOG] part_of somite in XAO UBERON:0003102 biolink:NamedThing surface structure Anatomical structure that overlaps the outer epithelial layer and is adjacent to the space surrounding the organism. monarch-merged.owl surface feature|surface structures|surface region|anatomical surface feature Wikipedia:Surface_structure|AAO:0010337|XAO:0003028|TAO:0000292|ZFA:0000292|VSAO:0000001|EHDAA2_RETIRED:0003010|AEO_RETIRED:0000010|galen:SurfaceRegion consider obsoleting. See issue/1305 uberon owl:Class Organism subdivision which is the collection of anatomical structures on the body surface.[ZFA] UBERON:0003110 biolink:NamedThing otic region monarch-merged.owl cranial vault AAO:0010208|XAO:0003175|TAO:0000189|ZFA:0000189 uberon owl:Class Anatomical cluster that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system.[TAO]|Anatomical cluster that is a posterolateral part of the neurocranium and structurally supports the vestibuloauditory system.[AAO] relationship loss: overlaps hyomandibular-otic region joint (TAO:0001947)[TAO] UBERONREF:0000007 has this as a syn for otic capsule UBERON:0003111 biolink:NamedThing sphenoid region Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium. monarch-merged.owl XAO:0003174|ZFA:0000290|TAO:0000290|AAO:0010207 uberon owl:Class Anatomical cluster that forms the floor and sidewalls of the middle part of the neurocranium.[AAO] UBERON:0003112 biolink:NamedThing olfactory region Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ. monarch-merged.owl ethmoid region EFO:0003525|NCIT:C98765|AAO:0010206|ZFA:0000351|XAO:0003172|TAO:0000351 uberon owl:Class Anatomical cluster that is located in the anterior region of the neurocranium and provides structural support for the olfactory organs.[AAO]|Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ.[TAO] UBERON:0003125 biolink:NamedThing vitelline membrane A structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]. monarch-merged.owl zona pellucida - vitelline membrane|yolk sac membrane|m. vitellina|zona pellucida BTO:0001450|FBbt:00000042|MESH:A16.631.886|XAO:0000030|GAID:1318|Wikipedia:Vitelline_membrane|VHOG:0000720|AAO:0010332 TODO - consider GO CC request. GO:0030704-vitelline membrane formation considered a subclass of CC organization uberon owl:Class Thin membrane enclosing and immediately adjacent to the ovum. Produced in the ovary.[AAO] relationship loss: part_of zygote (AAO:0010324)[AAO] Outside the plasma membrane, three envelopes surround the ovum. The first, the primary egg envelope, lies between the plasma membrane and the surrounding cells of the ovary. The most consistent component of this primary layer is the vitelline membrane, a transparent jacket of fibrous protein. In mammals, the homologous structure is called the zona pellucida.[well established][VHOG] UBERON:0003142 biolink:NamedThing prepupa An organism at the prepupal stage. The prepupal stage is a life stage interposed between the larval and the pupal stages in insects that undergo a complete metamorphosis. The start of the pre-pupal stage is marked by pupariation, and the end is marked by pupation.|An organism at the prepupal stage. The prepupal stage is a life stage interposed between the larval and the pupal stages in insects that undergo a complete metamorphosis. The start of the pre-pupal stage is marked by pupariation, and the end is marked by pupation monarch-merged.owl BTO:0001110|FBbt:00002952|HAO:0000812 uberon owl:Class UBERON:0003194 biolink:NamedThing imaginal disc-derived wing vein monarch-merged.owl FBbt:00004751|HAO:0001095 uberon owl:Class UBERON:0003209 biolink:NamedThing blood nerve barrier Barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]. monarch-merged.owl blood-nerve barrier Wikipedia:Blood-nerve_barrier uberon owl:Class UBERON:0003216 biolink:NamedThing hard palate Anterior portion of the palate consisting of bone and mucous membranes[GO]. The hard palate is formed from bony processes of the maxilla, premaxilla and palatine[Kardong]. monarch-merged.owl palatum durum|hard palate GAID:221|Wikipedia:Hard_palate|NCIT:C12230|MAT:0000161|UMLS:C0226901|MA:0002477|MIAA:0000161|EMAPA:18952|SCTID:245778002|FMA:55023|MESH:D021362 Illu:mouth.jpg uberon owl:Class in FMA this is divided into bony parts and submucosa UBERON:0003218 biolink:NamedThing ovary septum Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]. monarch-merged.owl uberon owl:Class UBERON:0003252 biolink:NamedThing thoracic rib cage Subdivision of skeletal system that consists of all ribs in an organism connected to the sternum and the vertebrae. Some vertebrates have abdominal ribs (gastrialia), not connected to the vertebrate - these are not considered part of the rib case. monarch-merged.owl cavea thoracis|thoracic cage|rib cage Wikipedia:Human_rib_cage|FMA:7480|Wikipedia:Rib_cage|galen:RibCage|SCTID:361741004 http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png uberon owl:Class Anatomical cluster that consists of more than one rib in an individual.[TAO] UBERON:0003314 biolink:NamedThing eye mesenchyme Mesenchyme that is part of a developing camera-type eye. monarch-merged.owl mesenchyme of eye EHDAA2:0000485|EMAPA:16673|VHOG:0001084|EHDAA:2910 TODO - change mesenchyme relationships to precursor_of uberon owl:Class UBERON:0003324 biolink:NamedThing mesenchyme of lower jaw Mesenchyme that is part of a developing lower jaw [Automatically generated definition]. monarch-merged.owl ventral mandibular arch mesenchyme|lower jaw mesenchyme|mesenchyme of ventral mandibular arch EMAPA:17916|VHOG:0001069|EHDAA2:0001024|EHDAA:8003 uberon owl:Class UBERON:0003369 biolink:NamedThing fossa ovalis of heart Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens. monarch-merged.owl oval fossa|fossa ovalis SCTID:277719009|FMA:9246|Wikipedia:Fossa_ovalis_(heart) uberon owl:Class UBERON:0003408 biolink:NamedThing gland of digestive tract A gland that is part of a digestive tract [Automatically generated definition]. monarch-merged.owl gland of digestive tract|gut gland|lower gastrointestinal tract gland|digestive tract gland|gland of lower gastrointestinal tract EMAPA:18815|MA:0003202 uberon owl:Class UBERON:0003416 biolink:NamedThing mesenchyme of tongue Mesenchyme that is part of a developing tongue [Automatically generated definition]. monarch-merged.owl tongue mesenchyme EMAPA:17882|EHDAA2:0004614 TODO - develops_from uberon owl:Class UBERON:0003420 biolink:NamedThing mesenchyme of sublingual gland Mesenchyme that is part of a developing sublingual gland [Automatically generated definition]. monarch-merged.owl ductus sublingualis mesenchyme|Rivinus'gland mesenchyme|mesenchyme of ductus sublingualis|mesenchyme of Rivinus'gland|sublingual gland mesenchyme VHOG:0001106|EMAPA:18811 uberon owl:Class UBERON:0003566 biolink:NamedThing head connective tissue A portion of connective tissue that is part of a head [Automatically generated definition]. monarch-merged.owl adult head textus connectivus|adult head portion of connective tissue|textus connectivus of adult head|head textus connectivus|adult head connective tissue|connective tissue of head|connective tissue of adult head|textus connectivus of head|head portion of connective tissue|portion of connective tissue of adult head|portion of connective tissue of head EMAPA:16098|MA:0000577 uberon owl:Class UBERON:0003576 biolink:NamedThing hip connective tissue A portion of connective tissue that is part of a hip [Automatically generated definition]. monarch-merged.owl connective tissue of hip|connective tissue of regio coxae|connective tissue of hip region EMAPA:37323|MA:0000656 uberon owl:Class UBERON:0003579 biolink:NamedThing shoulder connective tissue A portion of connective tissue that is part of a shoulder [Automatically generated definition]. monarch-merged.owl shoulder portion of connective tissue|shoulder textus connectivus|connective tissue of shoulder|portion of connective tissue of shoulder|textus connectivus of shoulder EMAPA:37315|MA:0000632 uberon owl:Class UBERON:0003587 biolink:NamedThing limb connective tissue A portion of connective tissue that is part of a limb [Automatically generated definition]. monarch-merged.owl textus connectivus of limb|connective tissue of limb|portion of connective tissue of limb|limb textus connectivus|limb portion of connective tissue MA:0000689|EMAPA:37313 uberon owl:Class UBERON:0003599 biolink:NamedThing tail connective tissue A portion of connective tissue that is part of a tail [Automatically generated definition]. monarch-merged.owl post-vent region connective tissue|connective tissue of tail|tail textus connectivus|post-vent region portion of connective tissue|tail portion of connective tissue|post-vent region textus connectivus|textus connectivus of tail|textus connectivus of post-vent region|portion of connective tissue of tail|portion of connective tissue of post-vent region|connective tissue of post-vent region EMAPA:16749|MA:0000697 uberon owl:Class UBERON:0003657 biolink:NamedThing limb joint Any joint that is part of a (free) limb. monarch-merged.owl skeletal limb joint|joint of limb skeletal system|joint of limb EMAPA:36501|MA:0000691|SCTID:312683002|galen:LimbJoint|FMA:321558 Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses uberon owl:Class UBERON:0003672 biolink:NamedThing dentition A collection of teeth arranged in some pattern in the mouth or other part of the body. The arrangement may be a simple row, a collection of rows, or a more elaborate structure, such as a toooth whorl. monarch-merged.owl set of teeth|teeth|collection of teeth|dentes|teeth set AAO:0000126|GAID:1249|FMA:75150|NCIT:C13072|OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA|SCTID:245543004|UMLS:C0011443|MESH:A14.254 uberon owl:Class The teeth collectively in the dental arch. Dentition ordinarily refers to the natural teeth in position in their alveoli. (MeSH[ncithesaurus:Dentition])|Dentition refers to set of teeth, especially with regard to their number, kind, and arrangement, in the mouth.[AAO] In FMA this is an anatomical set UBERON:0003678 biolink:NamedThing tooth apex monarch-merged.owl tooth apice|tooth apex|apical foramen|apex of tooth FMA:63000|GAID:1281|MESH:A14.254.900.750.700 uberon owl:Class UBERON:0003684 biolink:NamedThing abdominal cavity The part of the ventral body cavity that is within the abdomen proper (excluding the pelvic cavity). monarch-merged.owl cavity of compartment of abdomen|space of abdominal compartment|cavity of abdominal compartment|cavitas abdominis Wikipedia:Abdominal_cavity|MESH:A01.047.025|NCIT:C12664|MA:0003057|FMA:12266|EFO:0000213|OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA|GAID:17|galen:AbdominalCavity|SCTID:361294009|UMLS:C0230168|EMAPA:36505 http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg uberon owl:Class in FMA this contains the pelvic cavity, but this is inconsistent with the concept of abdominopelvic cavity UBERON:0003686 biolink:NamedThing tooth socket Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]. monarch-merged.owl alveolus dentali|alveolus dentalis|dental alveolus GAID:217|UMLS:C0227130|FMA:57490|MESH:D020390|NCIT:C94543|SCTID:288323008|Wikipedia:Dental_alveolus Alveole:zahn.jpg uberon owl:Class UBERON:0003693 biolink:NamedThing retroperitoneal space Anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side. monarch-merged.owl spatium retroperitoneale|retroperitoneum MESH:A01.047.025.750|NCIT:C12298|GAID:25|UMLS:C0035359|SCTID:243983004|Wikipedia:Retroperitoneal_space|EFO:0002806|FMA:15080|CALOHA:TS-2337 http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray1126.png uberon owl:Class retroperitoneal UBERON:0003694 biolink:NamedThing atlanto-axial joint The Atlanto-axial joint is of a complicated nature, comprising no fewer than four distinct joints. There is a pivot articulation between the odontoid process of the axis and the ring formed by the anterior arch and the transverse ligament of the atlas. monarch-merged.owl atlantoaxial|atlanto axial joint|articulatio atlantoaxialis|median atlanto-axial joint|lateral atlanto-axial joint|articulatio atlantoepistrophica|atlantoaxial joint GAID:250|FMA:25524|NCIT:C32157|MESH:D001268|OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA|Wikipedia:Atlanto-axial_joint|UMLS:C0004168|SCTID:361832004 http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png uberon owl:Class UBERON:0003705 biolink:NamedThing Meckel's diverticulum A small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct.|A small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct monarch-merged.owl Meckels diverticulum|ileal diverticulum|meckel diverticulum|diverticulum of Meckel|Meckel's diverticulum galen:MeckelsDiverticulum|MESH:A03.492.411.620.484.612|GAID:317|FMA:14967|ncithesaurus:Meckel_Diverticulum|Wikipedia:Meckel's_diverticulum uberon owl:Class finding in ncit; GALT in chickens UBERON:0003714 biolink:NamedThing neural tissue Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature. monarch-merged.owl portion of neural tissue|nerve tissue|nervous tissue AEO:0000123|EHDAA2:0003123|OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ|MESH:D009417|FMA:9642|SCTID:91728009|UMLS:C0027757|AAO:0000325|GAID:609|NCIT:C13052 uberon owl:Class One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO] FMA definition includes vasculature UBERON:0003718 biolink:NamedThing muscle spindle The sensory organs in muscle that are involved in the stretch reflex. monarch-merged.owl neuromuscular spindle|muscle stretch receptor MESH:A08.800.550.700.500.500|UMLS:C0027871|GAID:819|NCIT:C13824|SCTID:12945004|FMA:83607 uberon owl:Class UBERON:0003728 biolink:NamedThing mediastinum The central part of the thoracic cavity enclosed by the left and right pleurae. monarch-merged.owl mediastinal part of chest FMA:9826|CALOHA:TS-2338|EMAPA:36001|EFO:0003057|NCIT:C12748|MA:0003075|Wikipedia:Mediastinum|UMLS:C0025066|MESH:A01.911.800.500|OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA|SCTID:181217005|GAID:94 http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png uberon owl:Class mediastinal UBERON:0003729 biolink:NamedThing mouth mucosa A mucous membrane that lines the mouth. monarch-merged.owl mouth mucosa|mouth organ mucosa|mucous membrane of mouth|oral part of viscerocranial mucosa|oral mucous membrane|buccal mucosa|mouth mucous membrane|mucosal lining of mouth|tunica mucosa oris|oral mucosa|mucosa of mouth CALOHA:TS-0716|Wikipedia:Oral_mucosa|MA:0002794|FMA:59660|MESH:D009061|UMLS:C0026639|BTO:0002860|GAID:951|EMAPA:26937|NCIT:C77637 this is defined as any mucous membrane of the mouth - including palate, lips, uvula, etc. ncit split mouth/oral mucosa into lip and buccal. In future we may split into masticatory/keratinized (gingiva + hard palate) vs lining/non-keratinized (lips, cheeks, floor of mouth, soft palate). FMA distinguishes between mucosa of mouth and region of mouth (the latter including the buccal mucosa) uberon owl:Class the mucous membrane epithelium of the mouth. It can be divided into three categories: masticatory, lining, and specialized[Wikipedia:Oral_mucosa]. UBERON:0003842 biolink:NamedThing neural tube lumen An anatomical space that surrounded_by a neural tube. monarch-merged.owl prosencoel|neurocoel|cavity of neural tube|central lumen|neural lumen|neural tube neural lumen|lumen of neural tube EMAPA:16167|VHOG:0001119|EHDAA2:0001269|EHDAA:914|AAO:0011073|EHDAA:2889|XAO:0000252 UBERON:0005713 uberon owl:Class (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] UBERON:0003855 biolink:NamedThing gonad mesenchyme Mesenchyme that is part of a developing gonad [Automatically generated definition]. monarch-merged.owl mesenchyme of gonad|mesenchyme of gonada|gonada mesenchyme EHDAA:5012|EMAPA:16858|VHOG:0001090|EMAPA:17385 uberon owl:Class UBERON:0003886 biolink:NamedThing future coelemic cavity lumen An anatomical cavity that has the potential to develop into a coelemic cavity lumen. monarch-merged.owl body cavity precursor uberon owl:Class UBERON:0003887 biolink:NamedThing intraembryonic coelom The part of the coelom in the embryo between the somatopleuric and splanchnopleuric mesoderm; the principal body cavities of the trunk (thoracic, abdominal, and pelvic) arise from this embryonic part of the coelom|The part of the coelom in the embryo between the somatopleuric and splanchnopleuric mesoderm; the principal body cavities of the trunk (thoracic, abdominal, and pelvic) arise from this embryonic part of the coelom. monarch-merged.owl somatic coelom VHOG:0000316|Wikipedia:Intraembryonic_coelom|NCIT:C34195|UMLS:C1512940|EHDAA:251|EMAPA:16088 consider merging with coelom. TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. editor note: TODO check ZFA, which appears to be a structure present in adults uberon owl:Class (...) I regard it unlikely that coeloms of all bilaterian animals are comparable and evolved very early. Considering all these questions, few convincing characters concerning the evolution of body cavities remain to be named. (...) A segmental coelom appears to have evolved at least two times, in Annelida and in Myomerata (Acrania and Craniota).[well established][VHOG] UBERON:0003918 biolink:NamedThing kidney mesenchyme Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]. monarch-merged.owl mesenchyme of kidney check this uberon owl:Class UBERON:0003929 biolink:NamedThing digestive tract epithelium An epithelium that lines the lumen of the digestive tract. monarch-merged.owl epithelium of digestive tract|epithelial tissue of gut|gastrodermis|gut epithelium|epithelial tissue of digestive tract|digestive tract epithelial tissue|epithelium of gut|alimentary tract epithelium|gut epithelial tissue EMAPA:32928|TAO:0005123|XAO:0003200|ZFA:0005123|NCIT:C12963|BTO:0000956|EHDAA2:0004567|UMLS:C0836205|MA:0003201 uberon owl:Class Epithelium lining the lumen of the gut.[TAO] UBERON:0003934 biolink:NamedThing mesenchyme pectoral fin Mesenchyme that is part of a developing pectoral fin [Automatically generated definition]. monarch-merged.owl pectoral fin mesenchyme|mesenchyme pectoral fins|mesenchyme of pectoral fin EFO:0003604|ZFA:0001000|TAO:0001000 uberon owl:Class Mesenchyme that is part of the pectoral fin.[TAO] UBERON:0003935 biolink:NamedThing mesenchyme pelvic fin Mesenchyme that is part of a developing pelvic fin [Automatically generated definition]. monarch-merged.owl mesenchyme pelvic fins|pelvic fin mesenchyme|mesenchyme of pelvic fin TAO:0001449|ZFA:0001449 uberon owl:Class UBERON:0003945 biolink:NamedThing somatic motor system The neural tissue involved in the transmission of motor signals. monarch-merged.owl EMAPA:37953 uberon owl:Class UBERON:0003950 biolink:NamedThing inner ear canal The tubular ducts of the inner ear. monarch-merged.owl EMAPA:37882 uberon owl:Class UBERON:0003970 biolink:NamedThing placental labyrinth vasculature blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate|Blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate. monarch-merged.owl vasculature of placenta labyrinth|placental labyrinth vascular network|placental vasculature uberon owl:Class UBERON:0003995 biolink:NamedThing subarcuate fossa The irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]. monarch-merged.owl fossa subarcuata Wikipedia:Subarcuate_fossa|FMA:56418|EMAPA:37967 In the temporal bone, above and between the aquæductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP] uberon owl:Class UBERON:0004016 biolink:NamedThing dermatome A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells. monarch-merged.owl dermatomal mesenchyme|mesenchyma dermatomiale|epimere mesoderm|cutis plate AEO:0001017|UMLS:C0180383|EHDAA:1725|EHDAA:1737|EHDAA:1731|XAO:0000220|Wikipedia:Dermatome_(embryology)|FMA:295656|EHDAA:1719|AAO:0011028|EHDAA2_RETIRED:0003428|NCIT:C61572|EMAPA:32838 http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png uberon owl:Class Not to be confused with 'dermatome segment of skin'. UBERON:0004023 biolink:NamedThing ganglionic eminence The transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]. monarch-merged.owl GE|embryonic GE|fetal subventricular zone|embryonic/fetal subventricular zone|subventricular zone|SVZ|embryonic subventricular zone|embryonic SVZ|subependymal layer Wikipedia:Ganglionic_eminence|EMAPA:32665|PBA:128012818|DHBA:10549 uberon owl:Class contributes significantly in building up the GABAergic cortical cell population[WP] UBERON:0004024 biolink:NamedThing medial ganglionic eminence A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE. monarch-merged.owl MGE DHBA:10550|PBA:128012834|EMAPA:37471 uberon owl:Class UBERON:0004025 biolink:NamedThing lateral ganglionic eminence A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE. monarch-merged.owl LGE EMAPA:37470|DHBA:10551|PBA:128012822 uberon owl:Class UBERON:0004026 biolink:NamedThing caudal ganglionic eminence The caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle. monarch-merged.owl CGE EMAPA:37469|EFO:0001911|PBA:128012846|DHBA:10552 uberon owl:Class UBERON:0004035 biolink:NamedThing cortical subplate The transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate.|The transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate monarch-merged.owl subplate|subplate zone|cerebral cortex subplate|SP PBA:294021932|https://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png/360px-Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png|EMAPA:32703|Wikipedia:Subplate|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3233|DHBA:10522 uberon owl:Class The transient fetal subplate zone, together with the marginal zone and the cortical plate, represents the developmental anlage of the mammalian cerebral cortex. It serves as a waiting compartment for growing cortical afferents; its cells are involved in the establishment of pioneering cortical efferent projections and transient fetal circuitry, and apparently have a number of other developmental roles. The subplate zone is a phylogenetically recent structure and it is most developed in the human brain. Subplate neurons are among the first generated neurons in the mammalian cerebral cortex [1]. These neurons disappear during postnatal development and are important in establishing the correct wiring [2][3] and functional maturation [4] of the cerebral cortex. Subplate neurons appear to be selectively sensitive to injury (such as hypoxia) which in humans are associated with motor and cognitive defects UBERON:0004040 biolink:NamedThing cortical intermediate zone The region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone.|The region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone monarch-merged.owl cerebral cortex mantle layer|cerebral cortex mantle zone|IZ|cortical mantle layer EMAPA:17545|EMAPA:32712 uberon owl:Class UBERON:0004055 biolink:NamedThing primitive pit The small depression in the primitive streak that is caudal to the primitive node where the cells of the epiblast initially begin to invaginate during early embryogenesis. monarch-merged.owl FMA:293120|Wikipedia:Primitive_pit|EHDAA:551|EHDAA2:0001521|NCIT:C34267|UMLS:C1514439 TODO - check uberon owl:Class The primitive pit is a depression in the center of the primitive node, connecting to the notochord. It consists of part of the primitive streak[Wikipedia:Primitive_pit]. UBERON:0004060 biolink:NamedThing neural tube ventricular layer The layer of undifferentiated, proliferating cells that line the neural tube lumen that is the immediate transformation of the germinal neuroepithelium.|The layer of undifferentiated, proliferating cells that line the neural tube lumen that is the immediate transformation of the germinal neuroepithelium monarch-merged.owl ependymal layer|neural tube ventricular germinal zone|neural tube ependymal zone|neural tube ependymal layer|neural tube ventricular zone EMAPA_RETIRED:16783|EMAPA:17152|EMAPA:35362|MA:0003193 consider merging with 'ventricular zone'; note that the MA class probably does not belong here, as this is an embryonic structure uberon owl:Class The layer of undifferentiated, proliferating cells that line the neural tube lumen UBERON:0004061 biolink:NamedThing neural tube mantle layer The layer of glia and differentiating neurons that forms as a second layer around the germinal neuroepithium; as this develops it comes to lie between the ventricular and marginal layers and includes the basal and alar plates. Develops into neurons and glia forming a gray matter layer. monarch-merged.owl neural tube intermediate zone|future brain marginal layer http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1367|EMAPA:17148|EMAPA:35360 uberon owl:Class UBERON:0004062 biolink:NamedThing neural tube marginal layer The outermost layer of the neural tube that consists of axons from the developing mantle layer and will form the white matter|The outermost layer of the neural tube that consists of axons from the developing mantle layer and will form the white matter. monarch-merged.owl neural tube marginal zone|brain marginal zone http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1368|EMAPA:17151 uberon owl:Class UBERON:0004067 biolink:NamedThing lateral nasal prominence The lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it|The lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it. monarch-merged.owl prominentia nasalis lateralis|latero-nasal process|lateral nasal swelling|lateral nasal process EHDAA2:0000916|FMA:295864|Wikipedia:Lateral_nasal_prominence|EMAPA:16805|SCTID:308880000|EHDAA:4786 http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png uberon owl:Class UBERON:0004068 biolink:NamedThing medial nasal prominence The central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it.|The central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it monarch-merged.owl medial nasal swelling|nasomedial prominence|prominentia nasalis medialis|medial-nasal process|medial nasal process SCTID:308877001|EMAPA:16808|VHOG:0000804|Wikipedia:Medial_nasal_prominence|FMA:295858|EHDAA:4792|EHDAA2:0001076 http://upload.wikimedia.org/wikipedia/commons/8/85/Gray45.png uberon owl:Class Fusion of right and left medial nasal processes forms a primary palate rostrally and the nasal septum caudally. The incisive bone, including upper incisor teeth and the rostral up- per lip, are derived from the primary palate. The nasal septum consists of bone, cartilage, and a patch of soft tissue membrane that separates right & left halves of the nasal cavity. UBERON:0004099 biolink:NamedThing joint space of elbow Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint. monarch-merged.owl synovial cavity of elbow joint FMA:38911 uberon owl:Class UBERON:0004100 biolink:NamedThing renal collecting system The collecting duct system of the kidney consists of a series of tubules and ducts that connect the nephrons to the ureter. It participates in electrolyte and fluid balance through reabsorption and excretion, processes regulated by the hormones aldosterone and antidiuretic hormone. monarch-merged.owl tubulus renalis colligens|collecting duct system|kidney collecting duct system Wikipedia:Collecting_duct_system|FMA:265239|SCTID:279371005 http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png uberon owl:Class UBERON:0004105 biolink:NamedThing subungual region Region beneath a nail or claw. monarch-merged.owl CALOHA:TS-2351 consider merging with nailbed uberon owl:Class subungual UBERON:0004110 biolink:NamedThing midnasal cavity An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]. monarch-merged.owl FMA:59675 uberon owl:Class UBERON:0004119 biolink:NamedThing endoderm-derived structure An anatomical structure that develops (entirely or partially) from the endoderm. monarch-merged.owl Grouping term for query purposes uberon owl:Class UBERON:0004120 biolink:NamedThing mesoderm-derived structure An anatomical structure that develops (entirely or partially) from the mesoderm. monarch-merged.owl mesodermal derivative FBbt:00025998 Grouping term for query purposes uberon owl:Class UBERON:0004121 biolink:NamedThing ectoderm-derived structure An anatomical structure that develops (entirely or partially) from the ectoderm. monarch-merged.owl ectodermal deriviative FBbt:00025990 Grouping term for query purposes uberon owl:Class UBERON:0004122 biolink:NamedThing genitourinary system Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction. monarch-merged.owl genitourinary tract|UG tract|urogenital tract|urogenital system|Urogenitalsystem|GU tract|genito-urinary system NCIT:C12810|SCTID:278861008|OpenCyc:Mx4rQRpVMgAKEdyHxgDggVfs8g|BTO:0003091|MESH:D014566|galen:GenitoUrinarySystem|GAID:362|VHOG:0000286|UMLS:C0042066|XAO:0000140|EV:0100094|EFO:0003864|AAO:0000624|BILA:0000122|EHDAA:1013|FMA:280610|EMAPA:16367 uberon owl:Class Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction.[AAO] relationship type change: differentiates_from intermediate mesoderm (AAO:0010575) CHANGED TO: develops_from intermediate mesoderm (UBERON:0003064)[AAO] Kidneys and gonads (of vertebrates) develop from adjacent tissues, and after the excretory or urinary ducts have developed, the reproductive system usually taps into them or their derivatives.[well established][VHOG] genitourinary|urogenital UBERON:0004139 biolink:NamedThing cardiogenic plate The first recognizable structure derived from the heart field|The first recognizable structure derived from the heart field. monarch-merged.owl heart rudiment|cardiac crescent|cardiogenic crescent|myocardial plate EMAPA:16106|EHDAA2:0000215|VHOG:0000975 TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO uberon owl:Class (In vertebrates) The embryonic mesoderm is the source of both the cardiogenic plate, giving rise to the future myocardium as well as the endocardium that will line the system on the inner side.[well established][VHOG] UBERON:0004198 biolink:NamedThing comma-shaped body The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron|The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron. monarch-merged.owl CSB EMAPA:27681|ZFA:0005588 uberon owl:Class UBERON:0004199 biolink:NamedThing S-shaped body The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron|The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron. monarch-merged.owl stage II nephron|SSB EMAPA:27756|ZFA:0005589 TODO uberon owl:Class UBERON:0004200 biolink:NamedThing kidney pyramid Kidney pyramids are the conical arrangements of tubules that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts. monarch-merged.owl Malpighian pyramid|renal medullary region|pyramid|pyramid of Malpighi|medullary pyramid|pyramid of Malphigi|Malphigian pyramid|pyramides renales|renal pyramid|pyramis renalis SCTID:361328001|NCIT:C33436|FMA:258870|MA:0001654|NCIT:C12886|UMLS:C1514613|BTO:0003926|UMLS:C0227629|Wikipedia:Renal_pyramids Kidney:PioM.png UBERON:0002449|UBERON:0005098 uberon owl:Class not the same as FMA:50609 Pyramid (which is a volume / dimensional entity) UBERON:0004201 biolink:NamedThing kidney outer medulla inner stripe The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules.|The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules monarch-merged.owl stria interna medullae renalis|outer medulla inner stripe|inner stripe of renal medulla|inner stripe of outer medulla|inner stripe|inner stripe of medulla of kidney FMA:76663|MA:0002626|EMAPA:29675 uberon owl:Class UBERON:0004202 biolink:NamedThing kidney outer medulla outer stripe The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules|The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules. monarch-merged.owl outer medulla outer stripe|stria externa medullae renalis|outer stripe|outer stripe of outer medulla|outer stripe of renal medulla|outer stripe of medulla of kidney MA:0002629|FMA:76662|EMAPA:29663 uberon owl:Class UBERON:0004203 biolink:NamedThing cortical collecting duct The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex|The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex. monarch-merged.owl kidney cortex collecting duct|renal cortex collecting duct BTO:0002643|MA:0002600|EMAPA:28130 UBERON:0005267 uberon owl:Class UBERON:0004206 biolink:NamedThing long descending thin limb bend The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment|The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment. monarch-merged.owl uberon owl:Class UBERON:0004207 biolink:NamedThing prebend segment of loop of Henle The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption.|The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption monarch-merged.owl prebend segment uberon owl:Class UBERON:0004208 biolink:NamedThing nephrogenic mesenchyme Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron.|Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron monarch-merged.owl nephron mesenchyme|mesenchyme of nephron The detailed events associated with the differentiation of the nephrogenic mesenchyme are somewhat complex. It has been suggested that each terminal branch of the ureteric bud stimulates the associated cap mesenchyme tissue to form a renal vesicle (the most primitive stage of nephron development: a stage I nephron). This then elongates, becomes a comma-shaped and then an S-shaped body (stage II nephron), and makes contact with and fuses with the distal component of the ureteric bud. The latter then forms the collecting duct. One fold of the S-shaped body gives rise to Bowman's capsule (also termed the glomerular capsule). Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus. The inner epithelial layer of the Bowman's capsule (also called the visceral epithelium, or podocyte layer because it consists of podocytes) is closely apposed to the endothelial glomerulus. Together, the Bowman's capsule and the glomerulus comprise the definitive renal corpuscle. The rest of the nephron elongates to form components of the proximal tubule, the loop of Henle and the distal tubule. The distal pole of the developing nephron connects to the ureteric bud that induced it at an early stage of nephron/ collecting duct development, before differentiation of the proximal tubule, the loop of Henle and the distal tubule are complete. This connection allows the excretory products produced by the kidney to be removed and subsequently transferred, via the ureter, into the bladder where they are stored until it is appropriate to empty the bladder. [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] uberon owl:Class UBERON:0004290 biolink:NamedThing dermomyotome The bilaminar epithelium formed from the myotome and dermatome. monarch-merged.owl dermamyotome|dermomyotomes TAO:0001513|NCIT:C34140|UMLS:C1511786|EHDAA2:0003259|AAO:0010572|EMAPA:31109|VHOG:0000676|FMA:295654|AEO:0000214|ZFA:0001513 uberon owl:Class all but the sclerotome of a mesodermal somite; the primordium of skeletal muscle and, perhaps, of the dermis.|Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.[TAO]|Portion of somites that gives rise to dermis and muscles.[AAO]|Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. Within the dermomyotome there is also a medio-lateral difference. The central region makes dermis, the mesenchymal connective tissue of the back skin. The medial region (closest to neural tube) makes epaxial muscle, and the lateral region (furthest from neural tube) makes hypaxial muscle[http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=eurekah&part=A66768]. Thus, representatives of the agnathan vertebrates, chondrichthyans, and sarcopterygians all have a layer of undifferentiated cells external to the embryonic myotome. In the amniotes, this external cell layer is the dermomyotome. The simplest interpretation of the similar position, morphology, and lack of myosin labeling is that a dermomyotome epithelium is a shared, ancestral vertebrate characteristic.[well established][VHOG] UBERON:0004291 biolink:NamedThing heart rudiment A cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube. monarch-merged.owl rudimentary heart|heart cone ZFA:0000115|TAO:0000115 uberon owl:Class The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO] UBERON:0004339 biolink:NamedThing vault of skull Upper part of skull, consisting of parietals, frontals, post-parietals, and in some species the squamosal and a portion of the alisphenoid|Upper part of skull, consisting of parietals, frontals, post-parietals, and in some species the squamosal and a portion of the alisphenoid. monarch-merged.owl cranial vault|calvaria|skullcap|calvarium|skull roof|calva|skull vault FMA:52800|ZFA:0005606|Wikipedia:Calvaria_(skull)|SCTID:140592008|NCIT:C81188|EHDAA2:0002167|EHDAA:9538|UMLS:C0205950|VHOG:0000331|EMAPA:18016 Terminology notes. we include calvarium as a synonym, but Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books (and HPO) state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria We follow http://www.ncbi.nlm.nih.gov/pubmed/11523816 (Morriss-Kay) in definingenumerating the components of the skull vault. Note that there is a conflict with Kardong; e.g. in fig 7.10, Kardong places the squamosal in the temporal series. We cannot place the vault as entirely part of the dermatocranium as it has a small splanchnocranium contribution and a sclerotomal contribution uberon owl:Class The earliest tetrapods arose from rhipidistian ancestors and retained many of their skull features, including most of the bones of the dermatocranium.[well established][VHOG] UBERON:0004341 biolink:NamedThing primitive streak The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP].|The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP] monarch-merged.owl primitive streak - blastopore - germ ring NCIT:C28402|Wikipedia:Primitive_streak|UMLS:C0033153|FMA:293110|EHDAA:185|VHOG:0001202|EHDAA2:0001525|SCTID:361438007|EMAPA:16072 http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray13.png uberon owl:Class (...) the blastopore equivalent of chordates (germ ring in fish, marginal zone/blastopore lip in frog and node/primitive streak in chick and mouse) (...) (reference 1); Indeed, the primitive streak has been considered the homologue of the blastopore since the 1870s (reference 2).[well established][VHOG] VHOG includes a very broad grouping here based on http://www.ncbi.nlm.nih.gov/pubmed/9609826 UBERON:0004348 biolink:NamedThing optic eminence The embryonic structure that gives rise to the corneal ectoderm.|The embryonic structure that gives rise to the corneal ectoderm monarch-merged.owl VHOG:0001296|EHDAA:938|EMAPA:16322|RETIRED_EHDAA2:0001308 uberon owl:Class UBERON:0004364 biolink:NamedThing ectoplacental cone thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta|Thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta. monarch-merged.owl placenta - ectoplacental cone|epamniotic cone BTO:0001715|EMAPA:16059 uberon owl:Class derivative of the early postimplantation trophoblast, which probably gives rise to the spongiotrophoblast. UBERON:0004369 biolink:NamedThing Reichert's membrane An nonvascular extraembryonic basement membrane that forms on the inner surface of the trophectoderm during placenta morphogenesis and is secreted by the distal parietal endoderm; required for the maternofetal exchange of nutrients and is important for the postgastrulation development[MP]. a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells. monarch-merged.owl FMA:276826|EMAPA:16057 uberon owl:Class UBERON:0004455 biolink:NamedThing neurula embryo An embryo at the neurula stage. monarch-merged.owl neurula UMLS:C1518306|NCIT:C34229|BTO:0001766|BILA:0000061 UBERON:0007013 uberon owl:Class UBERON:0004456 biolink:NamedThing entire sense organ system Sum of all sensory systems in an organism. monarch-merged.owl sense organ system FMA:78499 uberon owl:Class note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs UBERON:0004530 biolink:NamedThing bony projection Anatomical projection that is composed of bone tissue. monarch-merged.owl bony projections|projection of bone|bone process ZFA:0001637|FMA:75433 uberon owl:Class UBERON:0004535 biolink:NamedThing cardiovascular system Anatomical system that has as its parts the heart and blood vessels. monarch-merged.owl Herz und Gefaesssystem|CV system GAID:467|CALOHA:TS-1297|NCIT:C12686|EFO:0000791|EV:0100017|MA:0000010|MIAA:0000016|WikipediaCategory:Cardiovascular_system|EHDAA2:0000216|EHDAA:394|VHOG:0000302|ZFA:0000010|UMLS:C0007226|XAO:0001010|MESH:D002319|BTO:0000088|OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA|AAO:0011001|SCTID:278198007|EMAPA:16370|TAO:0000010|MAT:0000016|EMAPA:16104|FMA:7161|BILA:0000016|XAO:0000100 we treat cardiovascular as part of circulatory system, with the latter including other kinds of circulation, including lymph. uberon owl:Class The vessels of the cardiovascular system are as varied as the diverse organs they supply. However, these variations are based on modifications of a fundamental plan of organization common to vertebrates.[well established][VHOG] UBERON:0004536 biolink:NamedThing lymph vasculature A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep. monarch-merged.owl set of lymphatic vessels|lymphatic vessel network|trunci et ductus lymphatici|lymph vessels|lymphatic vasculature|lymphatic trunks and ducts|lymphatic vessels set TAO:0005105|ZFA:0005105|FMA:63815 consider merging with parent uberon owl:Class A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO] UBERON:0004537 biolink:NamedThing blood vasculature A vascular network consisting of blood vessels. monarch-merged.owl blood system|blood vessels|blood vessel system|set of blood vessels|blood vascular network ZFA:0001079|TAO:0001079 uberon owl:Class UBERON:0004572 biolink:NamedThing arterial system The part of the cardiovascular system consisting of all arteries. monarch-merged.owl BTO:0004690|SCTID:362030008|EMAPA:16201|EHDAA:396|EMAPA:16371|EHDAA2:0000143|VHOG:0000273|MA:0002719 uberon owl:Class The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] UBERON:0004582 biolink:NamedThing venous system The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions. monarch-merged.owl vein system EHDAA2:0002171|NCIT:C33858|SCTID:362060003|BTO:0004692|UMLS:C1267406|EMAPA:16240|EHDAA:486|MA:0002720|VHOG:0000277 uberon owl:Class The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] UBERON:0004706 biolink:NamedThing bulbus cordis A transient fetal dilation of the distal (or cranial) heart tube located where the arterial trunk joins the ventral roots of the aortic arches.|a transient fetal dilation of the distal (or cranial) heart tube located where the arterial trunk joins the ventral roots of the aortic arches monarch-merged.owl primitive right ventricle endocardium Wikipedia:Bulbus_cordis|EHDAA:768|UMLS:C1284055|EMAPA:16333|EHDAA2:0000197|EHDAA:438|SCTID:361525002|FMA:70300|NCIT:C34114 http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray466.png TODO - check relationship to bulbus arteriosus uberon owl:Class A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO] UBERON:0004716 biolink:NamedThing conceptus The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]. monarch-merged.owl embryo plus adnexa AEO:0000194|NCIT:C34131|EHDAA2:0003235|Wikipedia:Conceptus|UMLS:C1516779|EMAPA:36040|EHDAA2:0000001|BTO:0003834 EHDAA2 places this as a subtype of organism. This leads to the inference that a conceptus is an embryo (if an embryo is defined as an organism at embryo stage), which eliminates the embryonic + extra-embryonic = conceptus uberon owl:Class UBERON:0004732 biolink:NamedThing segmental subdivision of nervous system Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres. monarch-merged.owl neuromere FBbt:00005140 revisit this after CARO is revised and/or we have defined metameric segment; note that with the additional of an A/P axis constraint this corresponds to what Richter at al call a neuromere (PMID:21062451) uberon owl:Class UBERON:0004734 biolink:NamedThing gastrula Organism at the gastrula stage. monarch-merged.owl trilaminar blastocyst|gastrula embryo|blastocystis trilaminaris|trilaminar blastoderm|trilaminar disc|tri-laminar disk|trilaminar germ|tri-laminar disc|trilaminar disk Wikipedia:Gastrula|UMLS:C1284022|BILA:0000060|BTO:0001403|Wikipedia:Trilaminar_blastocyst|MESH:A16.254.412|MIAA:0000179|UMLS:C0017199|FBbt:00005317|NCIT:C34058|NCIT:C34057|FMA:293108|GAID:1302 UBERON:0007012 uberon owl:Class We explicitly merge the NCITA terms here UBERON:0004735 biolink:NamedThing archenteron The cavity of a gastrula forming a primitive gut. monarch-merged.owl mesenteron|gastrocoel|primitive endodermal cavity AAO:0010430|BTO:0001696|Wikipedia:Archenteron|XAO:0000092 uberon owl:Class The primitive gut that forms during gastrulation in the developing blastula. It develops into the digestive tract of an animal. As primary mesenchyme cells detach from the vegetal pole in the blastula and enter the fluid filled cavity in the center (the blastocoel), the remaining cells at the vegetal pole flatten to form a vegetal plate. This buckles inwards towards the blastocoel in a process called invagination. The cells continue to be rearranged until the shallow dip formed by invagination transforms into a deeper, narrower pouch formed by the gastrula's endoderm. This narrowing and lengthening of the archenteron is driven by convergent extension. The open end of the archenteron is called the blastopore. The filopodia--thin fibers formed by the mesenchyme cells--found in a late gastrula contract to drag the tip of the archenteron across the blastocoel. The endoderm of the archenteron will fuse with the ectoderm of the blastocoel wall. At this point gastrulation is complete, and the gastrula has a functional digestive tube. The indentation that is actually formed is called the lip of the blastopore in amphibians and fish, and the primitive streak in birds and mammals. Each is controlled by the dorsal blastopore, and primitive node (also known as Hensen's node), respectively UBERON:0004750 biolink:NamedThing blastoderm A layer of cells formed at one pole of macrolecithal eggs such as the yolky egg of birds. The yolk prevents the division from taking place through the egg, resulting in meroblastic cleavage during the many cleavage divisions. At the animal pole (containing less yolk than the vegetal pole), the zygote divides and subdivides, forming the blastoderm, which gradually spreads around the yolk and forms the embryo. The blastoderm is composed of two layers, the epiblast and the hypoblast, which enclose the fluid-filled blastocoel cavity. monarch-merged.owl membrana germinativa|germinal membrane MESH:A16.254.085.067|TAO:0001176|AAO:0000042|ZFA:0001176|BTO:0000126|Wikipedia:Blastoderm uberon owl:Class UBERON:0004754 biolink:NamedThing foramen ovale of heart An anatomical space in the fetal heart that allows blood to enter the left atrium from the right atrium. monarch-merged.owl foramen ovale cordis|Bottalo's foramen|falx septi|ostium secundum of Born|foramen ovale UMLS:C0016521|galen:ForamenOvaleCordis|EHDAA2:0004142|MA:0001873|FMA:86043|NCIT:C34241|EMAPA:18244|SCTID:362015004|Wikipedia:Foramen_ovale_(heart) It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus[WP] uberon owl:Class In most individuals, the foramen ovale closes at birth. It later forms the fossa ovalis UBERON:0004755 biolink:NamedThing skeletal tissue A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]|A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]. monarch-merged.owl ZFA:0005619|VSAO:0000015|MA:0003047|EMAPA:37744|XAO:0004038|SCTID:309311006 Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from uberon owl:Class A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO] UBERON:0004761 biolink:NamedThing cartilaginous neurocranium The primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]. monarch-merged.owl cartilaginous chondocranium|embryonic chondocranium|cartiligionous skeletal structure of skull|neurocranium|cartilaginous skull|chondocranium EHDAA:6031|SCTID:155540009|NCIT:C34121|Wikipedia:Chondrocranium|FMA:76621|UMLS:C1516496|AAO:0010153|AAO:0000094|XAO:0003059 uberon owl:Class in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain) UBERON:0004780 biolink:NamedThing gastrointestinal system lamina propria A lamina propria that is part of a gastrointestinal system. monarch-merged.owl MA:0001899|UMLS:C1708197|NCIT:C49299 uberon owl:Class UBERON:0004786 biolink:NamedThing gastrointestinal system mucosa A mucosa that is part of a gastrointestinal system. monarch-merged.owl digestive tract mucosa|gut mucuous membrane|mucosa of gut|gut mucosa EMAPA:36591|SCTID:410433007|MA:0001521|BTO:0000546|BTO:0005568 The gut mucosa of amphioxus has insulin-secreting cells. http://www.ncbi.nlm.nih.gov/pubmed/16417468 uberon owl:Class UBERON:0004792 biolink:NamedThing secretion of endocrine pancreas A secretion that is part of a endocrine pancreas [Automatically generated definition]. monarch-merged.owl endocrine pancreas secretion|pars endocrina pancreatis secretion|pancreatic endocrine secretion|secretion of pars endocrina pancreatis MA:0002517|UMLS:C1518866|NCIT:C33255 uberon owl:Class UBERON:0004793 biolink:NamedThing secretion of exocrine pancreas A secretion that is part of a exocrine pancreas [Automatically generated definition]. monarch-merged.owl exocrine pancreas secretion|secretion of pars exocrina pancreatis|pancreatic exocrine secretion|pars exocrina pancreatis secretion UMLS:C1518867|MA:0002518|NCIT:C33256 uberon owl:Class UBERON:0004794 biolink:NamedThing esophagus secretion A secretion that is part of a esophagus [Automatically generated definition]. monarch-merged.owl gullet secretion|esophageal secretion|oesophagus secretion|secretion of gullet|secretion of esophagus|secretion of oesophagus MA:0002514|UMLS:C0227179|FMA:79662|NCIT:C52555 uberon owl:Class UBERON:0004819 biolink:NamedThing kidney epithelium the cellular avascular layer of the kidney luminar surfaces|The cellular avascular layer of the kidney luminar surfaces. monarch-merged.owl epithelium of kidney|renal epithelium|kidney epithelial tissue|epithelial tissue of kidney BTO:0000059|EMAPA:35457|MA:0002846|CALOHA:TS-0505 uberon owl:Class UBERON:0004867 biolink:NamedThing orbital cavity Anatomical cavity bounded by the orbital region of the cranium and forming the location of some or all of the eye. monarch-merged.owl orbit FMA:84961|ZFA:0005558|AAO:0000343|SCTID:280541000|Wikipedia:Orbit_(anatomy) uberon owl:Class note that the AAO and ZFA class is a cavity UBERON:0004871 biolink:NamedThing somatic layer of lateral plate mesoderm Layer of lateral plate mesoderm that forms the future body wall - underlies the ectoderm[WP]. monarch-merged.owl parietal mesoderm|outer layer of lateral plate mesoderm|somatic mesoderm BILA:0000047|AAO:0011100|XAO:0000271|Wikipedia:Lateral_plate_mesoderm#Division_into_layers|FMA:295570 check BILA uberon owl:Class UBERON:0004872 biolink:NamedThing splanchnic layer of lateral plate mesoderm Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]. monarch-merged.owl splanchnic mesoderm|visceral mesoderm|inner layer of lateral plate mesoderm AAO:0011102|FMA:295568|XAO:0000276|BILA:0000044|Wikipedia:Lateral_plate_mesoderm#Division_into_layers uberon owl:Class We group the BILA class here. Considering adding more general class for metazoa grouping cardiogenic successors UBERON:0004873 biolink:NamedThing splanchnopleure A structure created during embryogenesis when the lateral mesoderm splits into two layers - the inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]. monarch-merged.owl ventral splanchnic mesoderm UMLS:C1519472|VHOG:0000558|EMAPA:16181|FMA:295564|EHDAA2:0001903|Wikipedia:Splanchnopleure|NCIT:C34303|EHDAA:383 http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png TODO - check relationship to LPM uberon owl:Class UBERON:0004874 biolink:NamedThing somatopleure A structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]. monarch-merged.owl EHDAA:381|EHDAA2:0001847|EMAPA:16180|FMA:295566|UMLS:C1519423|Wikipedia:Somatopleure|NCIT:C34301|VHOG:0000557 http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png uberon owl:Class Gives rise to the paired appendages in jawed vertebrates. a persistent somatopleure through the redistribution and expansion of the lateral plate mesoderm is a synapomorphy for gnathostomes and a critical step in generating a novel developmental module with dramatic evolutionary potentia (Tulenko et al. 2012) http://burkelab.research.wesleyan.edu/current-projects/lamprey/ sources differ as to whether this is part-of or develops-from the LPM UBERON:0004875 biolink:NamedThing nephrogenic cord A portion of the urogenital ridge which is the source of much of the urinary system[WP]. monarch-merged.owl chorda nephrogenica Wikipedia:Nephrogenic_cord|UMLS:C1283944|FMA:72168|SCTID:361405003|NCIT:C34219 part_of or develops_from urogenital ridge? uberon owl:Class UBERON:0004876 biolink:NamedThing urogenital fold One of of the pair of folds derived from the cloacal folds which give rise to a portion of the external genitalia; in male embryos they close over the urethral plate and fuse to form the spongy (penile) urethra and ventral aspect of the penis, not including the glans; failure of fusion of the urethral folds leads to hypospadias; in female embryos they fuse only anterior to the anus and form the labia minora[MP]. monarch-merged.owl urethral fold|urogenital ridge|urogenital fold FMA:321919|EHDAA2:0004022|Wikipedia:Urogenital_folds|EMAPA:30888 uberon owl:Class Less commonly, urogenital fold refers to the fold in the mesonephros which is the precursor of e.g. the suspensory ligament of the ovary. This is the case in older versions of Gray's anatomy[WP] UBERON:0004880 biolink:NamedThing chordamesoderm The central region of trunk mesoderm. This tissue forms the notochord|The central region of trunk mesoderm. This tissue forms the notochord. monarch-merged.owl dorsal mesoderm|chorda mesoderm|presumptive notochord|axial chorda mesoderm AAO:0000478|TAO:0000091|ZFA:0000091|EFO:0003426 uberon owl:Class Notochord rudiment[ZFIN:ZDB-PUB-961014-576]. WP treats this as synonym of axial mesoderm. Induces neural tube. Gilbert: contains an anterior head process and the notochord. UBERON:0004886 biolink:NamedThing lung hilus A depression on the surface of the lung where the bronchus, blood vessels and nerves enter. monarch-merged.owl pulmonary hilum|hilus of lung|lung hilum|hilum pulmonis|hilum of lung|pulmonary hilus Wikipedia:Hilum_of_lung|SCTID:264017007|MA:0003099|UMLS:C0225701|NCIT:C49282|EMAPA:36005|FMA:7330 uberon owl:Class UBERON:0004909 biolink:NamedThing epithelium of gonad An epithelium surrounding a gonad. monarch-merged.owl gonad epithelium|gonadal epithelium|gonadal sheath FBbt:00004859|EHDAA:4032|EHDAA:5931|NCIT:C32676|UMLS:C1517534 after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts uberon owl:Class UBERON:0004914 biolink:NamedThing duodenal papilla One of the two small elevations on the mucosa of the duodenum, the major at the entrance of the conjoined pancreatic and common bile ducts and the minor at the entrance of the accessory pancreatic duct. monarch-merged.owl papilla duodeni|papilla of duodenum|papilla duodenalis MA:0003107|EMAPA:18662|SCTID:245389007|FMA:15953|NCIT:C119578 http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png uberon owl:Class UBERON:0004921 biolink:NamedThing subdivision of digestive tract A proximal-distal subdivision of the digestive tract. monarch-merged.owl segment of intestinal tract|intestinal tract|alimentary system subdivision|subdivision of alimentary system FMA:71131|FBbt:00100315 intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct. uberon owl:Class UBERON:0004922 biolink:NamedThing postnatal subventricular zone A mitotically active layer of cells surrounding the brain ventricles in the adult that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells[MP]. monarch-merged.owl SEZ|postnatal subependymal zone|subventricular zone|postnatal subventricular zone|adult subventricular zone|subependymal plate|postnatal subependymal plate|SVZ|subventricular zone of brain|subependymal zone|postnatal subependymal layer|subependymal layer|brain subventricular zone NLX:144262|Wikipedia:Subventricular_zone|DHBA:10536|BAMS:SEZ|MA:0000817|BTO:0003090|PBA:294021970|MBA:98|BAMS:SEL|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1901|EMAPA:32804 uberon owl:Class A paired brain structure situated throughout the lateral walls of the lateral ventricles. It has been associated with having four distinct layers of variable thickness and cell density, as well as cellular composition[WP][Wikipedia:Subventricular_zone].|The subventricular zone (SVZ) is one of two sources of adult-born neurons in the mammalian brain, the other being the subgranular zone (SGZ) of the hippocampus. In most adult mammals, the SVZ is a three-layered sheath that lies along the lateral wall of the lateral ventricle and consists of type A, B, and C cells. Type A rest along the ventricle wall and are neuronal precursor cells, Type B are adjacent astrocytes, and Type C are immature precursors to the Type A neuroblasts. The neuronal precursor cells travel along the rostral migratory stream ensheathed in a tube of Type B astrocytes, until they reach the olfactory bulb. There they integrate into the existing cellular network and mature into local interneurons. While the majority become adult-born granule cells, a subset become periglomerular cells. Interestingly, the human SVZ differs from other mammals' in several ways. It consists of four layers rather than three: ependymal cells (layer I), a hypo cellular gap (layer II), a ribbon of astrocytes (layer III), and a transitional zone (layer IV). The astrocytes are capable of differentiating into many kinds of tissue including new neurons. However, there is no evidence that the proliferating neurons travel along the rostral migratory stream in a chain to populate the olfactory bulb with new interneurons, as is the case for other mammals[NLX:144262].|The subventricular zone (SVZ) is a paired brain structure situated throughout the lateral walls of the lateral ventricles. Along with the subgranular zone of dentate gyrus, subventricular zone serves as a source of neural stem cells in the process of adult neurogenesis. It harbors the largest population of proliferating cells in the adult brain of rodents, monkeys and humans. Neurons generated in SVZ travel to the olfactory bulb via the rostral migratory stream[BTO:0003090]. WP divides this into 4 layers. UBERON:0005006 biolink:NamedThing mucosa of renal pelvis A mucosa that is part of a renal pelvis [Automatically generated definition]. monarch-merged.owl pelvis of ureter mucosa|mucous membrane of pelvis of ureter|kidney pelvis mucosa of organ|mucosa of kidney pelvis|organ mucosa of renal pelvis|mucosa of organ of pelvis of ureter|pelvis of ureter organ mucosa|pelvis of ureter mucosa of organ|renal pelvis organ mucosa|mucous membrane of kidney pelvis|kidney pelvis mucosa|kidney pelvis mucous membrane|mucosa of organ of kidney pelvis|renal pelvic mucosa|kidney pelvis organ mucosa|organ mucosa of pelvis of ureter|mucosa of organ of renal pelvis|pelvis of ureter mucous membrane|renal pelvis mucosa of organ|tunica mucosa pelvis renalis|renal pelvis mucosa|mucous membrane of renal pelvis|mucosa of pelvis of ureter|organ mucosa of kidney pelvis|renal pelvis mucous membrane FMA:17931|SCTID:243482002 uberon owl:Class UBERON:0005051 biolink:NamedThing mediastinum testis The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabeculæ) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP]|The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabeculæ) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP]. monarch-merged.owl testis mediastinum|hilum of testicle|body of highmore|mediastinum of testis Wikipedia:Mediastinum_testis|MA:0003240|EMAPA:18331|FMA:19812|SCTID:362279007 http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg uberon owl:Class UBERON:0005053 biolink:NamedThing primary nerve cord A cluster of neurons that is the most prominent longitudinally extending condensed part of a nervous system. monarch-merged.owl nerve cord|true nerve cord BTO:0001656|BILA:0000136 some species have multiple longitudinal nerve cords; this class refers to the most prominent one, which is dorsal in chordates and ventral in others. uberon https://github.com/obophenotype/uberon/issues/691 owl:Class UBERON:0005061 biolink:NamedThing neural groove The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds. monarch-merged.owl EMAPA:35594|FMA:295624|XAO:0000248|Wikipedia:Neural_groove|AAO:0011071|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1363|NCIT:C34224|SCTID:361463007|UMLS:C0814992 uberon owl:Class The neural groove is a shallow median groove between the neural folds of an embryo. The neural folds are two longitudinal ridges that are caused by a folding up of the ectoderm in front of the primitive streak of the developing embryo. The groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or canal, the ectodermal wall of which forms the rudiment of the nervous system. After the coalescence of the neural folds over the anterior end of the primitive streak, the blastopore no longer opens on the surface but into the closed canal of the neural tube, and thus a transitory communication, the neurenteric canal, is established between the neural tube and the primitive digestive tube. The coalescence of the neural folds occurs first in the region of the hind-brain, and from there extends forward and backward; toward the end of the third week the front opening (anterior neuropore) of the tube finally closes at the anterior end of the future brain, and forms a recess which is in contact, for a time, with the overlying ectoderm; the hinder part of the neural groove presents for a time a rhomboidal shape, and to this expanded portion the term sinus rhomboidalis has been applied. Before the neural groove is closed a ridge of ectodermal cells appears along the prominent margin of each neural fold; this is termed the neural crest or ganglion ridge, and from it the spinal and cranial nerve ganglia and the ganglia of the sympathetic nervous system are developed. By the upward growth of the mesoderm the neural tube is ultimately separated from the overlying ectoderm. The cephalic end of the neural groove exhibits several dilatations, which, when the tube is closed, assume the form of three vesicles; these constitute the three primary cerebral vesicles, and correspond respectively to the future fore-brain (prosencephalon), mid-brain (mesencephalon), and hind-brain (rhombencephalon). The walls of the vesicles are developed into the nervous tissue and neuroglia of the brain, and their cavities are modified to form its ventricles. The remainder of the tube forms the medulla spinalis or spinal cord; from its ectodermal wall the nervous and neuroglial elements of the medulla spinalis are developed while the cavity persists as the central canal[Wikipedia:Neural_groove]. UBERON:0005069 biolink:NamedThing neural fold hinge point The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]. monarch-merged.owl uberon owl:Class UBERON:0005075 biolink:NamedThing forebrain-midbrain boundary An anatomical boundary that adjacent_to a forebrain and adjacent_to a midbrain. monarch-merged.owl forebrain-midbrain boundary region|diencephalic-mesencephalic boundary|forebrain midbrain boundary ZFA:0001367|EMAPA:36449|TAO:0001367 uberon owl:Class The boundary between the diencephalon and the mesencephalon.[TAO] relationship loss: develops_from forebrain midbrain boundary neural tube (TAO:0007040)[TAO] UBERON:0005079 biolink:NamedThing eggshell A product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration[GO]. monarch-merged.owl egg shell BTO:0001716|WBbt:0005843|MESH:D004528|Wikipedia:Eggshell uberon owl:Class UBERON:0005085 biolink:NamedThing ectodermal placode An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]|An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]. monarch-merged.owl epithelial placode AEO:0000218 consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm; need to check taxon-appropriateness uberon owl:Class With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. in GO, covers optic, otic, olfactory, mammary, hair, tooth, sebaceous - and also insect structures UBERON:0005090 biolink:NamedThing muscle structure Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]. monarch-merged.owl musculus|muscle element|muscle FBbt:00005073|FMA:30316|EMAPA:32715 in some organisms such as drosophila, muscles can be single cells. This class groups together all discrete muscle elements, from multicellular muscle organs in vertebrates, to individual single-cell muscles in drisophila uberon owl:Class UBERON:0005091 biolink:NamedThing left horn of sinus venosus monarch-merged.owl sinus venosus left horn VHOG:0000488|EHDAA:482|FMA:70321|EMAPA:16238|EHDAA2:0001840 uberon owl:Class Three major adaptations, or 'novel cardiac components', that were not present in the ancestor chordate heart tube can be distinguished in the lower vertebrate heart: the atrium, ventricle, and possibly the muscular sinus venosus.[uncertain][VHOG] UBERON:0005092 biolink:NamedThing right horn of sinus venosus monarch-merged.owl sinus venosus right horn FMA:70318|EMAPA:16239|EHDAA2:0001841|VHOG:0000489|EHDAA:484 uberon owl:Class Three major adaptations, or 'novel cardiac components', that were not present in the ancestor chordate heart tube can be distinguished in the lower vertebrate heart: the atrium, ventricle, and possibly the muscular sinus venosus.[uncertain][VHOG] UBERON:0005095 biolink:NamedThing kidney rudiment . monarch-merged.owl kidney anlage class added for consistency with GO - consider merging with kidney mesenchyme. uberon owl:Class UBERON:0005096 biolink:NamedThing descending thin limb The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle[GO]. monarch-merged.owl descending thin limb of loop of Henle|descending limb of loop of Henle|descending limb of Henle's loop|thin descending loop of Henle|pars descendens (tubulus attenuatus)|thin descending limb|thin descending limb of loop of Henle|thin descending limb of the loop of Henle|loop of Henle thin descending limb|loop of Henle descending thin limb EMAPA:35514|FMA:17719|Wikipedia:Descending_limb_of_loop_of_Henle|MA:0002625 http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png UBERON:0005165 uberon owl:Class UBERON:0005107 biolink:NamedThing metanephric cap The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip[GO]. Mesenchyme closely apposed to the tips of the buds is called cap mesenchyme; it will later go on to form nephrons etc[GUDMAP]. monarch-merged.owl condensed mesenchyme|cap mesenchyme MA:0002997|EMAPA:27621 TODO - check EMAPA uberon owl:Class UBERON:0005185 biolink:NamedThing renal medulla collecting duct The portion of the collecting duct that resides in the renal medulla|The portion of the collecting duct that resides in the renal medulla. monarch-merged.owl kidney medulla collecting duct|medullary collecting duct EMAPA:35459|EMAPA:28061|MA:0002935|BTO:0004536 uberon owl:Class UBERON:0005207 biolink:NamedThing tonsil capsule A capsule that is part of a tonsil [Automatically generated definition]. monarch-merged.owl MA:0000776|FMA:294647 uberon owl:Class UBERON:0005212 biolink:NamedThing Leydig cell region of testis The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.. monarch-merged.owl interstitium of testis|testis interstitium|testis - interstitial|interstitium of the testis|testis interstitial tissue EMAPA:18687|MA:0002713|SCTID:362280005 uberon owl:Class UBERON:0005215 biolink:NamedThing kidney interstitium The interstitial compartment of the kidney, comprising the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances, bounded on all sides by epithelial and vascular basement membranes. monarch-merged.owl kidney interstitium group|stroma of kidney|renal stroma|interstitial tissue of kidney|renal interstitial tissue|renal interstitium FMA:70983|SCTID:362210003|MA:0002616|EMAPA:28518|NCIT:C33459 See https://sourceforge.net/p/geneontology/ontology-requests/10941/ uberon owl:Class The interstitium is necessarily involved in all intrarenal exchange processes since the reabsorption and secretion of fluid and solutes implicates a transit across the interstitial compartment. The fibroblasts in the interstitium provide the 'skeleton' of the tissue and maintain the three-dimensional architecture of the tissue. UBERON:0005250 biolink:NamedThing stomatodeum gland A gland that is part of a stomodeum. monarch-merged.owl stomatodaeum gland VHOG:0000658 check this uberon owl:Class UBERON:0005252 biolink:NamedThing lesser sac cavity An anatomical cavity that is part of a lesser sac [Automatically generated definition]. monarch-merged.owl lesser sac cavity|cavity of omental bursa|lesser peritoneal sac|cavity of lesser sac|omental bursa cavity|cavity of omental bursa viewed anatomically EMAPA:18461|FMA:9702|VHOG:0000827|EHDAA2:0004558 uberon owl:Class UBERON:0005271 biolink:NamedThing juxtamedullary cortex The part of the renal cortex nearest to the medulla. monarch-merged.owl inner renal cortex|inner cortex of kidney|juxtamedullary cortex of kidney KUPO:0001008|EMAPA:37623|FMA:74288|MA:0001648 uberon owl:Class UBERON:0005283 biolink:NamedThing tela choroidea A structure found in the walls of the ventricles of the brain, consisting of part of the meninges (pia mater in mammals) plus ependyma[cjm]. monarch-merged.owl tela chorioidea http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1378|TAO:0000447|Wikipedia:Tela_chorioidea|ZFA:0000447|FMA:242849 uberon owl:Class Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus[ZFA:0000447]. Vascularized tela choroidea is choroid plexus. Note that the structure in ZFA may be different UBERON:0005290 biolink:NamedThing myelencephalon The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]. monarch-merged.owl myelencephalon (medulla oblongata) MA:0000205|EHDAA:5526|CALOHA:TS-2365|HBA:9512|CALOHA:TS-0607|VHOG:0000456|EMAPA:17082|Wikipedia:Myelencephalon|BTO:0000758|DHBA:10662|EHDAA2:0001207 http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg uberon owl:Class The posterior of the two brain vesicles formed by specialization of the rhombencephalon in the developing embryo, it comprises the medulla oblongata. [TFD][VHOG] The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes UBERON:0005292 biolink:NamedThing extraembryonic tissue Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. monarch-merged.owl extra-embryonic tissue CALOHA:TS-2119|EFO:0001406|BTO:0003360|MIAA:0000061|MAT:0000061 uberon owl:Class UBERON:0005294 biolink:NamedThing gonadal ridge The elevation of thickened mesothelium and underlying mesenchyme found on the ventromedial border of the embryonic mesonephros in which the primordial germ cells become embedded, establishing it as the primordium of the testis or ovary.|the elevation of thickened mesothelium and underlying mesenchyme found on the ventromedial border of the embryonic mesonephros in which the primordial germ cells become embedded, establishing it as the primordium of the testis or ovary monarch-merged.owl crista gonadalis|genital ridge|genital cord|indifferent gonadal ridge|gonadal ridge BTO:0001402|AAO:0011047|SCTID:308801004|FMA:321917|XAO:0000018|NCIT:C34321|Wikipedia:Gonadal_ridge|EFO:0001414|EHDAA2:0004044|UMLS:C0231047|SCTID:361399001|EMAPA:35899|UMLS:C1512243|NCIT:C34184 http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1106.png TODO - check developmental relationships. merge with urogenital ridge? uberon owl:Class in eutherians, SRY transforms the indifferent gonad into testes UBERON:0005311 biolink:NamedThing mammary placode The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]. monarch-merged.owl mammary anlage EMAPA:35541 TODO develops_from uberon owl:Class in mouse, five pairs of symmetrically positioned mammary placodes (three thoracic and two inguinal) form at reproducible locations along the mammary line at E11.5; the individual pairs develop asynchronously and in a distinct order; pair 3 is first, followed by pair 4, then by pairs 1 and 5 (which develop together), and finally by pair 2; the orientation of placodal cells is not uniform, suggesting that placodes are formed by migration of cells from the mammary line; between E11.5 and E12.5, each mammary placode expands and invaginates into the underlying mesenchyme to form an early bulb-shaped mammary bud[MP] UBERON:0005334 biolink:NamedThing oral lamina propria A lamina propria that is part of a mucosa of oral region. monarch-merged.owl lamina propria of oral mucosa EMAPA:26947 uberon owl:Class UBERON:0005343 biolink:NamedThing cortical plate The outer neural tube region in which post-mitotic neuroblasts migrate along radial glia to form the adult cortical layers[MP]. monarch-merged.owl cerebral cortex cortical plate|CP|neocortex cortical plate|future neocortex|CxP|future cortical layers II-VI EMAPA:32711|MBA:695|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2702|DHBA:10515|BAMS:CTXpl|PBA:294021914 uberon owl:Class A single stem cell in the ventricular layer can give rise to neurons (and glial cells) in any of the cortical layers (Walsh and Cepko 1988)[NCBIBook:NBK10047]|in humans develops into cortical layers II-VI UBERON:0005358 biolink:NamedThing ventricle of nervous system A layer in the central nervous system that lines system of communicating cavities in the brain and spinal cord. monarch-merged.owl ventricular layer|region of wall of ventricular system of neuraxis FMA:242770|EMAPA:35209 uberon owl:Class UBERON:0005367 biolink:NamedThing hippocampus granule cell layer monarch-merged.owl hippocampus granular layer EMAPA:35406|MA:0000954 TODO - check this. The granule layer is typically in the dentate gyrus, under some definitions of hippocampus, the DG is included, thus making this layer a hippocampal layer uberon owl:Class UBERON:0005381 biolink:NamedThing dentate gyrus granule cell layer Granule cell layer is also called the DG principal cell layer. This one of the three layers of dentate gyrus that lies deep to the molecular layer and is made of densely packed layer that is four to eight granule cells thick. monarch-merged.owl DG granule cell layer|granular layer of dentate gyrus|stratum granulare gyri dentati|dentate gyrus, granule cell layer|granular layer of the dentate gyrus FMA:83146|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2122|BAMS:sg|BAMS:GrDG|BAMS:DG-sg|EMAPA:35276|MA:0000946|DMBA:16122|BIRNLEX:4129|MBA:632 uberon owl:Class UBERON:0005388 biolink:NamedThing photoreceptor array An array of photoreceptors and any supporting cells found in an eye. monarch-merged.owl light-sensitive tissue FBbt:00004200 uberon owl:Class UBERON:0005426 biolink:NamedThing lens vesicle Portion of tissue that gives rise to the lens. monarch-merged.owl presumptive lens|hollow lens vesicle|lens mass|immature lens|solid lens vesicle EHDAA:4737|VHOG:0001163|EMAPA:17163|SCTID:361510002|TAO:0002205|ZFA:0001679|EHDAA2:0000983 uberon owl:Class A vesicle formed from the lens pit of the embryo, developing into the crystalline lens. [TFD][VHOG] (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The optic cup induces the overlying surface ectoderm first to thicken as a lens placode and then to invaginate and form a lens vesicle that differentiates into the lens.[well established][VHOG] the lens of zebrafish (and other teleosts) forms from delamination of cells from the lens placode; thus, there is no formation of a hollow lens vesicle, in contrast to the situation in mammals and birds (Glass and Dahm, 2004) [PMID:16496288] The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24b26 hpf is accomplished in part by apoptosis, similar to mammals UBERON:0005439 biolink:NamedThing definitive endoderm monarch-merged.owl embryonic endoderm EMAPA:16070|EFO:0002574|EHDAA:218|VHOG:0000751|FMA:85519|EHDAA2:0000337 uberon owl:Class UBERON:0005450 biolink:NamedThing greater sac cavity The cavity in the abdomen that is inside the peritoneum but outside of the lesser sac. [WP,unvetted]. monarch-merged.owl greater sac lumen|greater peritoneal cavity|cavity of greater sac|cavum peritonei EMAPA:16886|VHOG:0000528|EHDAA2:0000724|FMA:9691 uberon owl:Class UBERON:0005463 biolink:NamedThing subcapsular sinus of lymph node A space between the capsule and the cortex which allows the free movement of lymphatic fluid and so contains a sparsity of lymphocytes. It is continuous with the similar lymph sinuses that flank the trabeculae. monarch-merged.owl lymph sinus|subcapsular sinus|lymph node subcortical sinus|marginal sinus|marginal sinus of lymph node|lymph path NCIT:C33033|UMLS:C1518051|MA:0003027|EMAPA:37662|NCIT:C33642|FMA:312355|UMLS:C1518052|Wikipedia:Subcapsular_sinus http://upload.wikimedia.org/wikipedia/commons/6/68/Gray597.png uberon owl:Class UBERON:0005564 biolink:NamedThing gonad primordium Portion of tissue that gives rise to the immature gonad. monarch-merged.owl future gonad|primitive gonad|immature gonad|undifferentiated gonad|gonadal primordium EMAPA:17204|EFO:0003651|EHDAA:5927|ZFA:0001262|TAO:0001262|WBbt:0008366|RETIRED_EHDAA2:0002148 uberon owl:Class Immature reproductive tissue that has not undergone final maturation into either testis or ovary.[TAO] this is a very broad grouping class UBERON:0005597 biolink:NamedThing lung primordium A pair of lateral diverticula just over the liver rudiment representing the primordia of the lungs, formed by the floor of the foregut just anterior to the liver diverticulum. monarch-merged.owl lateral diverticula|lung diverticulum|lung endoderm EFO:0002578|EMAPA:36007|AAO:0011059|XAO:0001002 UBERON:3010717 uberon owl:Class UBERON:0005606 biolink:NamedThing hyaloid cavity monarch-merged.owl EMAPA:17302|MA:0000272|VHOG:0001477|EHDAA:4733|EHDAA2:0000789|FMA:312291 uberon owl:Class A depression in the front of the vitreous body, lodging the lens. [adapted_from_the_definition_of_the_hyaloid_fossa] UBERON:0005625 biolink:NamedThing tubotympanic recess lumen The cavity formed by the tubotympanic recess epithelium. monarch-merged.owl tubotympanic recess cavity|tubotympanic recess space|cavity of tubotympanic recess|tubotympanic recess EHDAA2:0002095|FMA:312393 uberon owl:Class UBERON:0005629 biolink:NamedThing vascular plexus A vascular network formed by frequent anastomoses between the blood vessels (arteries or veins) of a part. monarch-merged.owl plexus vasculosus EMAPA:35904|AEO:0000219|FMA:5900|XAO:0004143|EHDAA2:0004112 uberon owl:Class In a vascular plexus, the contents of the vessels mix. A plexus allows blood to flow via multiple routes. If one branch of the plexus is obstructed, the blood may flow via the open branches[Wikipedia:Plexus#Circulatory_system]. UBERON:0005631 biolink:NamedThing extraembryonic membrane Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo. monarch-merged.owl SCTID:362840007|FMA:305915|EHDAA2:0004714 uberon https://github.com/obophenotype/uberon/wiki/Modeling-extraembryonic-membranes owl:Class stuctures homologous to the four extraembryonic membranes appear in mammals [ISBN:0073040584 (Vertebrates, Kardong)] EHDAA2 is a mereological sum. UBERON:0005688 biolink:NamedThing lens vesicle cavity An anatomical cavity that is part of a lens vesicle. monarch-merged.owl cavity of lens|lens cavity|cavity of lens vesicle EMAPA:17164|VHOG:0000531|EHDAA2:0000986 uberon owl:Class (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The optic cup induces the overlying surface ectoderm first to thicken as a lens placode and then to invaginate and form a lens vesicle that differentiates into the lens.[well established][VHOG] UBERON:0005737 biolink:NamedThing swim bladder tunica externa Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen). monarch-merged.owl tunica externa TAO:0002245|ZFA:0001700 the primary reason this term is manifest in uberon to disambiguate from a structure with the same/similar name uberon owl:Class UBERON:0005738 biolink:NamedThing swim bladder tunica interna Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen. monarch-merged.owl tunica interna TAO:0002246|ZFA:0001701 the primary reason this term is manifest in uberon to disambiguate from a structure with the same/similar name uberon owl:Class UBERON:0005753 biolink:NamedThing caudal part of nephrogenic cord The metanephros develops from the most caudal part of the nephrogenic cord that is itself derived from the intermediate plate mesoderm. monarch-merged.owl rear part of nephrogenic cord|caudal portion of nephrogenic cord|caudal region of nephrogenic cord|rear portion of nephrogenic cord uberon owl:Class UBERON:0005754 biolink:NamedThing rostral part of nephrogenic cord The initial renal anlage that develops from the most rostral part of the nephrogenic cord is termed the pronephros. monarch-merged.owl uberon owl:Class UBERON:0005863 biolink:NamedThing cartilaginous condensation Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes. monarch-merged.owl chondrogenic condensation|cartilage condensation|cartilagenous condensation AEO:0000147|XAO:0004022|EMAPA:32731|VSAO:0000092|EHDAA2_RETIRED:0003147 uberon owl:Class isa cell condensation in VSAO; has_part chondroblast in AEO UBERON:0005866 biolink:NamedThing pre-cartilage condensation A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts. monarch-merged.owl precartilage condensation|precartilagenous condensation|pre-chondrogenic condensation|prechondrogenic condensation AEO:0000150|EMAPA:32736|EHDAA2:0003150 uberon owl:Class A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage. UBERON:0005867 biolink:NamedThing mandibular prominence The paired ventral prominences formed by bifurcation of the first pharyngeal arches in the embryo; the two prominences unite ventrally and fuse to form the mandible and lower lip.|the paired ventral prominences formed by bifurcation of the first pharyngeal arches in the embryo; the two prominences unite ventrally and fuse to form the mandible and lower lip monarch-merged.owl prominentia mandibularis|mandibular swelling|mandibular process UMLS:C1512982|NCIT:C34204|Wikipedia:Mandibular_prominence|EHDAA:5871|EHDAA2:0001061|FMA:293051|EMAPA:17355 check develops_from uberon owl:Class UBERON:0005868 biolink:NamedThing maxillary prominence the paired dorsal prominences formed by bifurcation of the first pharyngeal arches in the embryo that unite with the ipsilateral medial nasal process to form the upper jaw|The paired dorsal prominences formed by bifurcation of the first pharyngeal arches in the embryo that unite with the ipsilateral medial nasal process to form the upper jaw. monarch-merged.owl maxillary process|embryonic maxillary process|prominentia maxilaris|maxillary process of embryo NCIT:C34206|Wikipedia:Maxillary_prominence|EHDAA:5877|EHDAA2:0001070|FMA:293049|EMAPA:17359|SCTID:346355001|UMLS:C1513037 http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png uberon owl:Class UBERON:0005870 biolink:NamedThing olfactory pit An indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]. monarch-merged.owl nasal pit EHDAA:4772|SCTID:361485001|AAO:0011068|EHDAA2:0001295|XAO:0000275|EFO:0003496|FMA:295840|EMAPA:16800|Wikipedia:Nasal_pit|XAO:0004073 we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode uberon owl:Class By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the nasal pits or olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[Wikipedia:Nasal_pit]. UBERON:0005876 biolink:NamedThing undifferentiated genital tubercle The embryonic anlage of the external genitalia, which emerges as paired swellings ventral to the cloacal membrane, is proposed to be derived from all three germ layers, and gives rise to the penis, clitoris, scrotum, labia, and foreskin.|the embryonic anlage of the external genitalia, which emerges as paired swellings ventral to the cloacal membrane, is proposed to be derived from all three germ layers, and gives rise to the penis, clitoris, scrotum, labia, and foreskin monarch-merged.owl undifferentiated genital tubercle|genital tubercle|tuberculum phallicum|phallic tubercle|tuberculum genitale SCTID:308798005|VHOG:0000583|EHDAA:5925|Wikipedia:Genital_tubercle|FMA:302888|EHDAA2:0000705|EMAPA:17382 http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray1119.png uberon owl:Class embryonic anlage of the external genitalia, which emerges as paired swellings ventral to the cloacal membrane, is proposed to be derived from all three germ layers, and gives rise to the penis, clitoris, scrotum, labia, and foreskin; GT development is indistinguishable in male and female mouse embryos until ~E16, when the urethral plate begins to be masculinized to form the penile urethra, marking the beginning of an androgen-dependent phase of sexual differentiation[MP]|The eminence in the embryo which develops into the clitoris or penis. [TFD][VHOG] In mammalian embryos, male and female external genitalia develop from the genital tubercle.[well established][VHOG] GT development is indistinguishable in male and female mouse embryos until approximately E16, when the urethral plate begins to be masculinized to form the penile urethra, marking the beginning of an androgen-dependent phase of sexual differentiation[MP:0011771]|All amniotes studied to date initiate external genital development with the formation of paired genital swellings. In mammals, archosaurs, and turtles, these swellings merge to form a single genital tubercle, the precursor of the penis and clitoris[PMID:24960313]|todo - add taxon constraints we assume the EMAPA class is the undifferentiated form based on TS timings UBERON:0005882 biolink:NamedThing neural tube alar plate The mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses. monarch-merged.owl lamina alaris|alar plate of neural tube|lamina dorsolateralis|alar plate|dorsal part of neural tube|alar lamina|sensory part of neural tube http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1370|Wikipedia:Alar_plate http://upload.wikimedia.org/wikipedia/commons/2/29/Gray646.png uberon https://github.com/obophenotype/uberon/issues/336 owl:Class UBERON:0005891 biolink:NamedThing coelomic epithelium The epithelial lining of the surface of the coelom. monarch-merged.owl germinal epithelium of Waldeyer|celomic epithelium Wikipedia:Coelomic_epithelium|XAO:0000329 uberon owl:Class EHDAA2:0004049 used to be called 'coelomic epithelium' but is now 'gonadal ridge mesothelium' UBERON:0005905 biolink:NamedThing insect labrum A mouthpart of insects. monarch-merged.owl labrum|insect labium|labium HAO:0000456|Wikipedia:Labrum_(arthropod_mouthpart)|FBbt:00004522|BTO:0004104|TADS:0000039 this term should be ceded to the arthropod anatomy ontology uberon owl:Class UBERON:0005906 biolink:NamedThing serous sac Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA].|Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA] monarch-merged.owl SCTID:362890006|MA:0000005|FMA:9689|EMAPA:16060 See notes for serous membrane uberon owl:Class UBERON:0005913 biolink:NamedThing zone of bone organ monarch-merged.owl bone organ zone FMA:10483 uberon owl:Class UBERON:0005944 biolink:NamedThing axial skeleton plus cranial skeleton Subdivision of skeleton which consists of cranial skeleton, set of all vertebrae, set of all ribs and sternum[FMA, modified]. monarch-merged.owl skeleton axiale AAO:0000963|EMAPA:17214|UMLS:C0222645|MA:0000308|SCTID:361725000|Wikipedia:Axial_skeleton|EMAPA:18043|VSAO:0000056|NCIT:C32172|XAO:0004011 http://upload.wikimedia.org/wikipedia/commons/8/8b/Axial_skeleton_diagram.svg uberon http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton owl:Class Skeletal subdivision of the central body axis including the cranium, vertebrae, notochord, ribs, and sternum.[VSAO] UBERON:0005972 biolink:NamedThing tunnel of Corti A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti. monarch-merged.owl EMAPA:37976 uberon owl:Class UBERON:0005981 biolink:NamedThing vena cava sinus The portion of the cavity of the right atrium of the heart that receives the blood from the vena cavae and is separated from the rest of the atrium by the crista terminalis. monarch-merged.owl sinus venarum cavarum|cavity of inflow part of right atrium|posterior right atrial cavity FMA:13246 uberon owl:Class UBERON:0006060 biolink:NamedThing conotruncus The distal portion of Bulbus cordis that forms an outflow channel and gives rise to the proximal conus cordis. monarch-merged.owl bulbus cordis rostral half|cardiac conotruncus|rostral half of bulbus cordis EMAPA:16338|VHOG:0000437 uberon owl:Class The conus arteriosus is considered a component part of the heart because it has a myocardial wall and lies within the pericardial cavity. It is a feature of the evolutionary primitive state. In amphibians it is called the bulbus cordis, a term that is also used for its equivalent in mammalian embryos. The more derived extant bony fish, like the zebrafish, do not have this cardiac compartment. They have a so-called bulbus arteriosus, which is not enclosed by cardiac muscle, but by elastic tissue and smooth muscle, and therefore is considered to be a specialization of the proximal part of the ventral aorta (256). However, similar to the mammalian condition (306, 326, 339), the bulbus arteriosus in zebrafish embryonic hearts is surrounded by myocardium that disappears with development (134, 135). The bony fish bulbus arteriosus might thus be homologous to the shark conus arteriosus and amphibian/mammalian bulbus cordis.[well established][VHOG] UBERON:0006077 biolink:NamedThing subdivision of vertebral column A collection of all skeletal elements in some subdivision of the vertebral column. monarch-merged.owl subdivision of vertebral skeleton|vertebral subdivision|vertebral column subdivision|vertebral series|vertebral region|vertebrae series FMA:16201 uberon owl:Class UBERON:0006134 biolink:NamedThing nerve fiber A threadlike extension of a nerve cell and consists of an axon and myelin sheath (if it is myelinated) in the nervous system. There are nerve fibers in the central nervous system and peripheral nervous system. A nerve fiber may be myelinated and/or unmyelinated. In the central nervous system (CNS), myelin by oligodendroglia cells is formed. Schwann cells form myelin in the peripheral nervous system (PNS). Schwann cells also make a thin covering in an axon without myelin (in the PNS). A peripheral nerve fiber contains an axon, myelin sheath, schwann cells and its endoneurium. There are no endoneurium and schwann cells in the central nervous system. monarch-merged.owl nerve fibre|neurofibra|neurofibrum|nerve fibers Wikipedia:Nervous_system_fiber|SCTID:88545005|BAMS:nfi|MESH:A08.663.542|FMA:5914 uberon owl:Class neurofibrous UBERON:0006171 biolink:NamedThing renal sinus A hollowed out area on the medial margin of the kidney. The renal sinus opens at the renal hilum; it contains the renal aa. and vv., major calyces and renal pelvis, perirenal fat.|A hollowed out area on the medial margin of the kidney. The renal sinus opens at the renal hilum; it contains the renal aa. and vv., major calyces and renal pelvis, perirenal fat monarch-merged.owl FMA:15611|SCTID:362222000 uberon owl:Class UBERON:0006204 biolink:NamedThing inguinal ligament A band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh. monarch-merged.owl Poupart's ligament|fallopian ligament|Vesalius' ligament FMA:19855|SCTID:361900000|Wikipedia:Inguinal_ligament uberon owl:Class UBERON:0006205 biolink:NamedThing pectineal ligament An extension of the lacunar ligament that runs on the pectineal line of the pubic bone. monarch-merged.owl ligamentum pectineale|Cooper's ligament (groin)|inguinal ligament of Cooper Wikipedia:Pectineal_ligament|FMA:20188|SCTID:256661003 uberon owl:Class we include a disjointness axiom to avoid confusion that may arise from the synonyms 'ligamentum pectineale' and 'ligamentum pectinum' (eye trabecular meshwork) UBERON:0006206 biolink:NamedThing iridocorneal angle Acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]. monarch-merged.owl anterior chamber angle SCTID:244498000|FMA:58577 uberon owl:Class UBERON:0006211 biolink:NamedThing buccopharyngeal membrane The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx. monarch-merged.owl pharyngeal membrane|oral plate|oropharyngeal membrane|oral membrane EHDAA:536|FMA:313607|EHDAA2:0000189|EMAPA:16259|Wikipedia:Buccopharyngeal_membrane|SCTID:361412007|VHOG:0000380 http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png uberon owl:Class UBERON:0006212 biolink:NamedThing bulbo-ventricular groove Depression at base of developing heart that contains a population of cardiomyocytes that migrate and contribute to the interventricular septum. monarch-merged.owl ependymal sulcus|ependymal groove|interventricular sulcus|bulbo-ventricular sulcus|bulboventricular groove EHDAA2:0000195|EMAPA:16693|EHDAA:766|VHOG:0001405 uberon https://github.com/obophenotype/uberon/issues/347 owl:Class UBERON:0006216 biolink:NamedThing cervical sinus of His A temporary depression caudal to the second pharyngeal arch, containing the succeeding pharyngeal arches; it is overgrown by the second pharyngeal arch and closes off as the cervical vesicle. This sinus is bounded in front by the hyoid arch, and behind by the thoracic wall. monarch-merged.owl cervical sinus|sinus cervicalis|retro-hyoid depression Wikipedia:Cervical_sinus|EHDAA:6534|RETIRED_EHDAA2:0000239|EHDAA:5105|EHDAA2:0000078|EMAPA:16884 http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg uberon owl:Class it is ultimately obliterated by the fusion of its walls. UBERON:0006217 biolink:NamedThing cloacal membrane The membrane that covers the embryonic cloaca, formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm; the urorectal septum joins the cloacal membrane and divides it into an anal membrane and a urogenital membrane; the point where the urorectal septum intersects the cloacal membrane is the future site of the perineal body; proliferation of mesoderm and ectoderm around the cloacal membrane produces primordial tissues of the external genitalia in both sexes: the genital tubercle, genital folds, and genital swellings. monarch-merged.owl membrana cloacalis|embryonic cloacal membrane EHDAA2:0000257|FMA:295525|SCTID:308826008|UMLS:C0231056|EHDAA:214|NCIT:C34128|Wikipedia:Cloacal_membrane|EHDAA:2933|VHOG:0001198|EMAPA:16832 http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray991.png uberon owl:Class A membrane that separates the proctodeum and the hindgut in the early embryo. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.497, see_Kardong_KV][VHOG] In mammals, the cloaca exists as an embryonic structure that undergoes septation to become distinct urethral, anal, and genital orifices.[well established][VHOG] UBERON:0006218 biolink:NamedThing common atrial chamber monarch-merged.owl EHDAA:1267|EMAPA:16342|RETIRED_EHDAA2:0000268 uberon owl:Class UBERON:0006223 biolink:NamedThing dorsal meso-oesophagus monarch-merged.owl dorsal meso-esophagus EMAPA:16704|RETIRED_EHDAA2:0000412|EHDAA:2945|MA:0001570 uberon owl:Class UBERON:0006224 biolink:NamedThing elbow joint primordium monarch-merged.owl EMAPA:17710|EHDAA2:0000431|EHDAA:8483 uberon owl:Class UBERON:0006227 biolink:NamedThing ethmoid bone primordium monarch-merged.owl FMA:312597|EHDAA:8363|EMAPA:18023|EHDAA2:0000456 consider obsoleting, the ethmoid is endochondral? uberon owl:Class UBERON:0006232 biolink:NamedThing facio-acoustic VII-VIII preganglion complex monarch-merged.owl facio-acoustic preganglion complex EMAPA:16660|VHOG:0000715|EHDAA:1477|RETIRED_EHDAA2:0000496 uberon owl:Class UBERON:0006235 biolink:NamedThing foregut-midgut junction An anatomical junctions that overlaps the foregut and midgut. monarch-merged.owl VHOG:0000291|EMAPA:16363|EHDAA2:0000569|EHDAA:526 uberon owl:Class Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[well established][VHOG] UBERON:0006236 biolink:NamedThing tetrapod frontal bone primordium monarch-merged.owl frontal bone primordium EHDAA2:0000577|FMA:312589|EHDAA:9540|EMAPA:18017 uberon owl:Class UBERON:0006238 biolink:NamedThing future brain The embryonic precursor of the brain. monarch-merged.owl embryonic brain|encephalon|presumptive brain|brain rudiment EFO:0003431|TAO:0000146|EHDAA:830|EMAPA:16089|RETIRED_EHDAA2:0000591|BTO:0004726|FMA:312967|ZFA:0000146|EHDAA:300|BAMS:Enc uberon owl:Class The embryonic precursor of the brain and the set of mature brain structures that derive from it (CUMBO) UBERON:0006241 biolink:NamedThing future spinal cord monarch-merged.owl presumptive spinal cord neural plate|presumptive spinal cord neural rod|presumptive spinal cord|presumptive spinal cord neural keel TAO:0000417|EHDAA:898|EMAPA:16755|EFO:0003438|EHDAA2:0000674|EMAPA:16092|ZFA:0000417 uberon owl:Class UBERON:0006243 biolink:NamedThing glossopharyngeal IX preganglion monarch-merged.owl glossopharyngeal preganglion EHDAA:1479|RETIRED_EHDAA2:0000713|EMAPA:16661 uberon owl:Class UBERON:0006244 biolink:NamedThing hip joint primordium monarch-merged.owl EHDAA2:0000785|EHDAA:8462|EMAPA:17739 uberon owl:Class UBERON:0006251 biolink:NamedThing interparietal bone primordium monarch-merged.owl EHDAA2:0000881|EMAPA:18018 uberon owl:Class UBERON:0006253 biolink:NamedThing embryonic intraretinal space The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina. monarch-merged.owl intraretinal space of optic cup|retina intraretinal space|intraretinal space of retina|intraretinal space EHDAA2:0000889|EMAPA:16676|EHDAA:4761|EMAPA:17170|VHOG:0000534 uberon owl:Class The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina. [TFD][VHOG] (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] UBERON:0006259 biolink:NamedThing lens pit A pitlike depression in the ectoderm of the lens placode where the primordial lens is developing[TFD]. monarch-merged.owl EHDAA:3809|NCIT:C34201|EMAPA:16799|UMLS:C1517769|EHDAA2:0000981|VHOG:0000806 uberon owl:Class A pitlike depression in the ectoderm of the lens placode where the primordial lens is developing. [TFD][VHOG] UBERON:0006264 biolink:NamedThing mouth-foregut junction An anatomical junctions that overlaps the mouth and foregut. monarch-merged.owl EMAPA:16258|VHOG:0000592|RETIRED_EHDAA2:0001205|EHDAA:534 uberon owl:Class UBERON:0006268 biolink:NamedThing notochordal process A midline cellular cord formed from the migration of mesenchymal cells from the primitive knot|A midline cellular cord formed from the migration of mesenchymal cells from the primitive knot. monarch-merged.owl chordamesoderm|presumptive notochord EHDAA2:0001279|EMAPA:16102|UMLS:C1518430|EHDAA:224|NCIT:C34232|VHOG:0001213|FMA:293135 The notochordal process grows cranially until it reaches the prechordal plate, the future site of the mouth. In this area the ectoderm is attached directly to the endoderm without intervening mesoderm. This area is known as the oropharyngeal membrane, and it will break down to become the mouth. At the other end of the primitive streak the ectoderm is also fused directly to the endoderm; this is known as the cloacal membrane (proctodeum), or primordial anus. uberon owl:Class UBERON:0006272 biolink:NamedThing oronasal cavity monarch-merged.owl EHDAA2:0001331|EMAPA:17200|VHOG:0001352|EHDAA:5882 uberon owl:Class In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity UBERON:0006273 biolink:NamedThing otic pit the pair of depressions of thickened otic placode epithelium, that further develops into the otic vesicles|The pair of depressions of thickened otic placode epithelium, that further develops into the otic vesicles. monarch-merged.owl otic cup EMAPA:16536|EHDAA2:0001336|Wikipedia:Otic_pit|EHDAA:929|VHOG:0001147|FMA:302911|NCIT:C34238 UBERON:0009123 uberon owl:Class A depression appearing in each otic placode, marking the beginnning of embryonic development of the internal ear. [TFD][VHOG] UBERON:0006275 biolink:NamedThing pericardio-peritoneal canal Each of the canals that connects the pericardial cavity with the peritoneal cavity and becomes a pleural cavity. monarch-merged.owl pericardio-peritoneal channel EHDAA2:0001440|SCTID:361428002|UMLS:C1283967|EMAPA:16282|VHOG:0001498|EHDAA:636|NCIT:C34246 uberon owl:Class UBERON:0006278 biolink:NamedThing pleuropericardial folds Each of the folds that grow out from the lateral part of the body wall. They fuse and meet with the dorsal and ventral mesentery of the foregut, separating the pleural cavities from the pericardial cavity. monarch-merged.owl pleuropericardial membranes|pleuropericardial membrane|pleuro-pericardial folds EMAPA:17706|EHDAA2:0001480|NCIT:C34255|EHDAA:4126|VHOG:0001499 uberon owl:Class In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] As the folds grow towards the midline, carrying the phrenic nerve, the root of the folds migrate ventrally UBERON:0006283 biolink:NamedThing future cardiac ventricle Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle. monarch-merged.owl embryonic ventricle|primordial ventricle|presumptive cardiac ventricle heart tube|embryonic heart ventricle|early heart ventricle|primitive ventricle of heart|future heart ventricle|primitive ventricle|primordial cardiac ventricle NCIT:C34160|TAO:0002231|EHDAA2:0001531|FMA:71006|Wikipedia:Embryonic_ventricle|SCTID:361524003|EMAPA:16350|ZFA:0001719 The embryonic ventricle or primitive ventricle of the developing heart gives rise to the trabeculated parts of the left and right ventricles. In contrast, the smooth parts of the left and right ventricles originate from the embryological bulbus cordis. The primitive ventricle becomes divided by a septum, the septum inferius or ventricular septum, which grows upward from the lower part of the ventricle, its position being indicated on the surface of the heart by a furrow. Its dorsal part increases more rapidly than its ventral portion, and fuses with the dorsal part of the septum intermedium. For a time an interventricular foramen exists above its ventral portion, but this foramen is ultimately closed by the fusion of the aortic septum with the ventricular septum[WP] UBERON:0010226 uberon owl:Class UBERON:0006291 biolink:NamedThing scapula pre-cartilage condensation A scapula endochondral element that is composed primarily of a pre-cartilage condensation. monarch-merged.owl VHOG:0000960|EMAPA:18027|EHDAA2:0001778|EHDAA:6041 uberon owl:Class the scapula has been shown to develop from multiple tissues, such as the dermomyotome of the somites, the mesodermal portion of the soma- topleure (a domain of the lateral plate mesoderm or LPM) and neural crest cell-derived mesenchyme (Huang et al., 2000; Matsuoka et al., 2005; Wang et al., 2005). UBERON:0006305 biolink:NamedThing tunica vasculosa lentis An extensive capillary network, spreading over the posterior and lateral surfaces of the lens of the eye. It disappears shortly after birth. monarch-merged.owl EHDAA:5705|EMAPA:18235|EHDAA2:0002097|VHOG:0000978|Wikipedia:Tunica_vasculosa_lentis|FMA:321625 uberon owl:Class Soon after it forms, the mammalian lens becomes invested with a network of capillaries. (...) The capillary network on the posterior of the lens is the tunica vasculosa lentis (TVL).[well established][VHOG] UBERON:0006307 biolink:NamedThing urogenital membrane monarch-merged.owl EMAPA:17378|EHDAA:7011|VHOG:0001187|RETIRED_EHDAA2:0002141|SCTID:172994001|EHDAA2:0004025 During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] uberon owl:Class Ventral part of the cloacal membrane separating the gut from the fetus external environment. [TFD][VHOG] UBERON:0006312 biolink:NamedThing ocular refractive media Body substance in a liquid or semi-solid state in the eyeball which serves to refract light. monarch-merged.owl MA:0001911 uberon owl:Class ocular refraction UBERON:0006358 biolink:NamedThing vasa hyaloidea propria The vasa hyaloidea propria and tunica vasculosa lentis are small branches of the hyaloid artery which fill the primary vitreous. monarch-merged.owl MA:0001285|FMA:312395|EMAPA:18236 uberon owl:Class UBERON:0006360 biolink:NamedThing tongue intermolar eminence A large swelling on the dorsal surface of the tongue at the junction between the anterior two-thirds and posterior one-third. monarch-merged.owl intermolar eminence MA:0001590|EMAPA:18273 uberon owl:Class UBERON:0006442 biolink:NamedThing subhepatic recess monarch-merged.owl subhepatic space|hepatic recess FMA:20676|SCTID:36051002 uberon owl:Class UBERON:0006517 biolink:NamedThing kidney calyx Recesses of the kidney pelvis which divides into two wide, cup-shaped major renal calices, with each major calix subdivided into 7 to 14 minor calices. Urine empties into a minor calix from collecting tubules, then passes through the major calix, renal pelvis, and ureter to enter the urinary bladder. (From Moore, Clinically Oriented Anatomy, 3d ed, p211). monarch-merged.owl calices renales|calyx|renal calix|renal calyx EMAPA:18676|GAID:427|MESH:D007670|FMA:284558|MA:0000369|NCIT:C12927|UMLS:C0022651|SCTID:276832000 uberon owl:Class calyceal UBERON:0006544 biolink:NamedThing kidney vasculature A vasculature that is part of a kidney. monarch-merged.owl TAO:0005305|EMAPA:28457|ZFA:0005305 uberon owl:Class UBERON:0006553 biolink:NamedThing renal duct A tube in the kidney that collect and transport urine. monarch-merged.owl TAO:0005289|ZFA:0005289 uberon owl:Class in ZFA this is defined as part of mesonephros UBERON:0006585 biolink:NamedThing vestibular organ An organ that is part of a vestibular system. monarch-merged.owl balance organ BIRNLEX:2519|UMLS:C0682674 uberon owl:Class UBERON:0006598 biolink:NamedThing presumptive structure Portion of embryonic tissue determined by fate mapping to become a structure. monarch-merged.owl future structure|presumptive structures TAO:0001116|AAO:0000479|ZFA:0001116 Consider merging with anlage uberon owl:Class UBERON:0006614 biolink:NamedThing aponeurosis A sheet of extracellular matrix. monarch-merged.owl aponeurotic|aponeuroses SCTID:331712004|FMA:9722|Wikipedia:Aponeurosis|NCIT:C32133|AEO:0000092|ZFA:0005652|EHDAA2:0003092|UMLS:C0225205 http://upload.wikimedia.org/wikipedia/commons/e/e6/Aponeurosis.png uberon owl:Class Aponeuroses are layers of flat broad tendons. They have a shiny, whitish-silvery color, and are histologically similar to tendons, but are very sparingly supplied with blood vessels and nerves. When dissected, aponeuroses are papery, and peel off by sections. The primary regions with thick aponeurosis is in the ventral abdominal region, the dorsal lumbar region, and in the palmar region. Their primary function is to join muscles and the body parts the muscles act upon[Wikipedia:Aponeurosis]. in ZFA, aponeuroses are subtypes of tendons, but this is inconsistent with tendons being muscle-bone connections UBERON:0006643 biolink:NamedThing tunica albuginea of testis The dense fibrous connective tissue layer that covers the testis. monarch-merged.owl testis tunica albuginea|tunica albuginea|tunica albuginea (testis)|tunica albuginea testis|tunica albuginea (testicles) EHDAA2:0002096|FMA:19843|EHDAA:9388|VHOG:0000801|Wikipedia:Tunica_albuginea_of_testis|MA:0003254|EMAPA:19289|UMLS:C0227999|NCIT:C33819|SCTID:279604006 uberon owl:Class The layer of connective tissue covering the testicles. [Wikipedia_(15/09/09)][VHOG] The tunica albuginea testis is the major component of the capsule of mammalian testes. (...) Our results from studying the mole provide evidence that the spatio-temporal pattern of testis development is not perfectly conserved in mammals, since we found differences with respect to the mouse testis organogenesis. This fact is even more significant when we consider that, apart from the mouse, the mole is probably the one of the best-known mammalian species in terms of the genetic control of testis development, implying that more peculiarities would be found if more species were investigated.[uncertain][VHOG] UBERON:0006644 biolink:NamedThing tunica albuginea of ovary monarch-merged.owl tunica albuginea ovarii|overay tunica albuginea FMA:18630|EMAPA:30522|Wikipedia:Tunica_albuginea_(ovaries)|SCTID:258409003 uberon owl:Class UBERON:0006667 biolink:NamedThing pituitary fossa Anatomical cavity that is part of the sella turcica and contains the pituitary gland. monarch-merged.owl hypophysial fossa|cavity of hypophyseal fossa|pituitary fossa|cavity of sella turcica|hypophyseal fossa EMAPA:19195|FMA:54721|SCTID:264194004|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2359 uberon owl:Class UBERON:0006674 biolink:NamedThing inguinal ring An entrance or exit of the inguinal canal. monarch-merged.owl SCTID:278830004|Wikipedia:Inguinal_rings|FMA:65075|EMAPA:29307 uberon owl:Class UBERON:0006682 biolink:NamedThing hypoglossal canal The hypoglossal canal is a bony canal in the occipital bone of the skull. monarch-merged.owl canalis nervi hypoglossi|hyperglossal canal|anterior condylar canal EMAPA:19012|FMA:75370|Wikipedia:Hypoglossal_canal|SCTID:139380001 uberon owl:Class UBERON:0006685 biolink:NamedThing pharyngeal tubercle On the lower surface of the basilar part of occipital bone, about 1 cm. in front of the foramen magnum, is the pharyngeal tubercle which gives attachment to the fibrous raphC) of the pharynx, also known as the pharyngeal raphe. This is the point of attachment for the superior pharyngeal constrictor muscle. monarch-merged.owl FMA:75746|Wikipedia:Pharyngeal_tubercle|EMAPA:19250 uberon owl:Class UBERON:0006688 biolink:NamedThing sublingual caruncle The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity. monarch-merged.owl caruncula sublingualis Wikipedia:Sublingual_caruncle|SCTID:85139009|EMAPA:18961|FMA:77273 http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png uberon owl:Class UBERON:0006692 biolink:NamedThing vertebral canal A conduit enclosed within the vertebral foramen of the vertebrae through which the spinal cord passes. monarch-merged.owl c. vertebralis|foramen vertebrale|neural canal|spinal canal|vertebral canal|spinal cavity FMA:9680|Wikipedia:Spinal_canal|SCTID:361746009|NCIT:C33869|AAO:0000693|UMLS:C0037922|NCIT:C34221|GAID:242|UMLS:C1522467 http://upload.wikimedia.org/wikipedia/commons/3/30/Gray82.png TODO - check neural vs vertebral canal; embryonic vs adult? uberon owl:Class Canal formed by the vertebral centra ventrally, the pedicels laterally, and the neural arches dorsally that encloses and protects the spinal cord.[AAO] UBERON:0006729 biolink:NamedThing liver perisinusoidal space The extravascular space in the liver between the parenchymal cells and a sinusoid that contains the blood plasma. monarch-merged.owl hepatic perisinusoidal space|Disse's space|space of Disse|perisinusoidal space of Disse|spatium perisinusoideum|perisinusoidal space SCTID:17779003|Wikipedia:Space_of_Disse|FMA:63162|UMLS:C0227530|NCIT:C33309|MA:0002497 uberon owl:Class UBERON:0006756 biolink:NamedThing median lingual swelling During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]. monarch-merged.owl median lingual swelling|tuberculum impar|median tongue bud|tuberculum linguale mediale VHOG:0000730|FMA:312476|EMAPA:17187|SCTID:308821003|Wikipedia:Tuberculum_impar|EHDAA2:0001081 The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview] http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png uberon owl:Class Most adult amphibians have a tongue, as do all known reptiles, birds and mammals. Thus it is likely that the tongue appeared with the establishment of tetrapods and this structure seems to be related, to some extant, to the terrestrial lifestyle.[well established][VHOG] UBERON:0006757 biolink:NamedThing lateral lingual swelling During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line. monarch-merged.owl tuberculum laterale|lateral lingual prominence|tuberculum linguale laterale|lateral swellings EHDAA2:0000911|EMAPA:17189|FMA:313628|Wikipedia:Lateral_lingual_swelling|VHOG:0000731 http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png uberon owl:Class Most adult amphibians have a tongue, as do all known reptiles, birds and mammals. Thus it is likely that the tongue appeared with the establishment of tetrapods and this structure seems to be related, to some extant, to the terrestrial lifestyle.[well established][VHOG] paired UBERON:0006768 biolink:NamedThing epiphyseal line monarch-merged.owl epiphysial junction|line of bony union FMA:9918|SCTID:333108008 uberon owl:Class UBERON:0006777 biolink:NamedThing tectal plate Embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )].|embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )] monarch-merged.owl lamina quadrigemina|quadrigeminal plate FMA:77488|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1374 The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453) uberon owl:Class UBERON:0006794 biolink:NamedThing visual processing part of nervous system monarch-merged.owl optic lobe GAID:1233 This grouping class is primarily to accommodate GO uberon owl:Class UBERON:0006815 biolink:NamedThing areolar connective tissue Loose connective tissue located at the outer and inner layers of organs. Examples: submucosal connective tissue, tunica adventitia of artery, papillary dermis, superficial fascia of dorsum of hand. monarch-merged.owl areolar tissue|loose connective tissue|loose areolar connective tissue AAO:0000027|SCTID:68477002|FMA:63897 uberon owl:Class Also known as loose connective tissue. A pliable, mesh-like tissue with a fluid matrix that functions to cushion and protect body organs.[AAO] relationship loss: subclass connective tissue proper (AAO:0000099)[AAO] cushions body organs UBERON:0006820 biolink:NamedThing body of sternum The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end. monarch-merged.owl sternal body|corpus sterni|gladiolus of sternum|sternum body|gladiolus|body of the sternum|mesosternum AAO:0000939|FMA:7487|Wikipedia:Body_of_sternum|SCTID:361743001|EMAPA:37443 http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png uberon owl:Class Proximal portion of the sternum, usually elaborated into a stylum that may be ossified.[AAO] AAO defines as 'Proximal portion of the sternum, usually elaborated into a stylum that may be ossified' [AAO:0000939] UBERON:0006833 biolink:NamedThing lumen of trachea An anatomical space that surrounded_by a trachea. monarch-merged.owl lumen of cartilaginous trachea|tracheal lumen SCTID:197486000|FMA:7469 uberon owl:Class UBERON:0006857 biolink:NamedThing interrenal primordium monarch-merged.owl TAO:0001346|ZFA:0001346 consider ceding to TAO/ZFA - however, structure also present in cyclostomes uberon owl:Class splanchnic mesoderm adjacent to urogenital ridge UBERON:0006860 biolink:NamedThing swim bladder A thin membranous, sometimes alveolated sac in the dorsal portion of the abdominal cavity. Contains a varying mixture of gases, not identical to the composition of air. May be one, two or three chambered. May be connected to the gut by a tube, the ductus pneumaticus (then called physostomous) or unconnected (then called physoclistous). monarch-merged.owl fish maw|swimbladder|air bladder|gas bladder BTO:0002148|BTO:0001607|EFO:0003483|TAO:0000076|VHOG:0000310|SCTID:64748009|ZFA:0000076 UBERON:0008980 uberon owl:Class Cavitated compound organ that is double-chambered, located in the coelom and used to maintain buoyancy and may function as an acoustic resonator.[TAO] Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata. (...) In actinopterygian fishes, apart from Cladistia, the ventral intestinal pocket migrates dorsally and becomes the swim-bladder, a mainly hydrostatical organ (reference 1); Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung (reference 2).[well established][VHOG] Found in Actinopterygii. Often lacking in bottom fishes May function as one or more of: hydrostatic organ, sound producing organ, sound receptor, respiratory organ UBERON:0006867 biolink:NamedThing anal part of perineum The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]. monarch-merged.owl regio analis|anal triangle|anal region SCTID:243995004|Wikipedia:Anal_triangle|FMA:20347 http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png uberon owl:Class UBERON:0006877 biolink:NamedThing vasculature of liver A vasculature that is part of a liver. monarch-merged.owl hepatic vascular element|liver vascular element|hepatic vasculature|liver vascular system EMAPA:35501|FMA:73748|EHDAA2:0003454 uberon owl:Class the EHDAA2 term and the FMA term may not be exact equivalents - check UBERON:0006909 biolink:NamedThing lumen of digestive tract An anatomical space that surrounded_by a digestive tract. monarch-merged.owl lumen of gut|digestive tract lumen|lumen of alimentary tract|lumen of digestive tract|gut cavity|gut lumen EMAPA:32908|BTO:0000349|FMA:45677 uberon owl:Class UBERON:0006934 biolink:NamedThing sensory epithelium Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue. monarch-merged.owl neuroepithelium CALOHA:TS-0682|SCTID:309045006|FMA:62410 uberon owl:Class note that the definition sourced from Dorlands say 'simple columnar', but FMA says atypical UBERON:0006960 biolink:NamedThing ovary stroma The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis. monarch-merged.owl ovary stroma|ovarian stroma|stroma of the ovary|stroma ovarii|interstitial tissue of ovary|stroma ovarica FMA:18626|CALOHA:TS-1246|SCTID:259306002|NCIT:C33638|UMLS:C0737271|EMAPA:28880|MA:0002991|Wikipedia:Stroma_of_ovary uberon owl:Class UBERON:0006965 biolink:NamedThing vascular cord The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]. monarch-merged.owl ZFA:0005077|EFO:0003709|TAO:0005077 uberon owl:Class UBERON:0006976 biolink:NamedThing peptonephridium Organs opening into the buccal cavity of pharynx (supposedly modified nephridia) of invertebrates. monarch-merged.owl oesophageal appendage|esophageal appendage BTO:0004280 uberon owl:Class UBERON:0007105 biolink:NamedThing vitelline duct A long narrow tube that joins the yolk-sac to the midgut lumen of the developing fetus. monarch-merged.owl yolk duct|omphalomesenteric duct|ductus vitellinus|embryonic yolk stalk|yolk-stalk GAID:1314|MESH:A16.254.891|EMAPA:26139|Wikipedia:Vitelline_duct|SCTID:280701007 http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray30.png uberon owl:Class In humans, it appears at the end of the fourth week, when the yolk-sac presents the appearance of a small pear-shaped vesicle (the umbilical vesicle). The vesicle can be seen in the afterbirth as a small, somewhat oval-shaped body whose diameter varies from 1 mm to 5 mm. It is situated between the amnion and the chorion and may lie on or at a varying distance from the placenta. Generally, the duct fully obliterates (narrows and disappears) during the seventh week, but a failure of the duct to close is termed a vitelline fistula. This results in discharge of meconium from the umbilicus. About two per cent of fetuses exhibit a type of vitelline fistula characterized by persistence of the proximal part of the vitelline duct as a diverticulum protruding from the small intestine, Meckel's diverticulum, which is situated about two feet above the ileocecal junction, and may be attached by a fibrous cord to the abdominal wall at the umbilicus. Sometimes a narrowing of the lumen of the ileum is seen opposite the site of attachment of the duct UBERON:0007108 biolink:NamedThing vernix caseosa An unctuous substance composed of sebum and desquamated epithelial cells, which covers the skin of the fetus. monarch-merged.owl vernix caseosa|vernix UMLS:C0042541|NCIT:C34328|MESH:D014708|Wikipedia:Vernix_caseosa|GAID:1174 uberon owl:Class UBERON:0007118 biolink:NamedThing umbilicus The pit in the center of the abdominal wall marking the point where the umbilical cord entered in the fetus. monarch-merged.owl umbilical region|umbilical part of abdomen|navel SCTID:243961003|NCIT:C77533|Wikipedia:Navel|FMA:61584|UMLS:C0041638|GAID:29|MESH:A01.047.849|galen:Umbilicus uberon owl:Class umbilical|omphalo UBERON:0007128 biolink:NamedThing glomeral mesenchyme Portion of tissue that consists of the precursors of the pronephric glomus or glomerulus; derived from the medial portion of the pronephric intermediate mesoderm. monarch-merged.owl corpuscle|glomerulus XAO:0000110 uberon owl:Class UBERON:0007144 biolink:NamedThing embryonic post-anal tail An embryonic structure that will either develop into a post-anal tail or recede into a vestigial remnant of the tail. monarch-merged.owl embryo tail|tail of embryo|embryonic tail FMA:85540|EMAPA:16748 uberon owl:Class By the fourth week a clear tail is seen in the human embryo. It recedes after a few weeks and these tissues form what is commonly known as the tailbone (coccyx). UBERON:0007145 biolink:NamedThing dome of diaphragm monarch-merged.owl diaphragm dome SCTID:244940004|VHOG:0000933|EMAPA:18046|FMA:13332 uberon owl:Class In mammals, the diaphragm muscle divides the thoracoabdominal cavity into thorax and abdomen. In most mammals, the diaphragm is a flat sheet with muscle fibers radiating outward from a central tendon, and the diaphragm's apposition to the cranial surface of the liver gives it a dome-shape. Muscle fiber contraction reduces the curvature of the dome, thereby expanding the thoracic cavity and aspirating air into the lungs.[well established][VHOG] UBERON:0007147 biolink:NamedThing lumen of midgut An anatomical cavity that surrounded_by a midgut. monarch-merged.owl midgut lumen FMA:54366|EMAPA:18377 uberon owl:Class UBERON:0007148 biolink:NamedThing lumen of hindgut An anatomical cavity that surrounded_by a hindgut. monarch-merged.owl hindgut lumen FMA:54367|EMAPA:18396 uberon owl:Class UBERON:0007158 biolink:NamedThing lumen of anal canal An anatomical cavity that surrounded_by a anal canal. monarch-merged.owl anal canal lumen EMAPA:18836|FMA:17357 uberon owl:Class UBERON:0007159 biolink:NamedThing lumen of colon An anatomical cavity that surrounded_by a colon. monarch-merged.owl colonic lumen|colon lumen EMAPA:18945|SCTID:362156004|FMA:18374 uberon owl:Class UBERON:0007168 biolink:NamedThing long head of biceps brachii The long head originates on the supraglenoid tubercle just above the shoulder joint from where its tendon passes down along the intertubercular groove of the humerus into the joint capsule of the shoulder joint. [1] When the humerus is in motion, the tendon of the long head is held firmly in place in the intertubercular groove by the greater and lesser tubercles and the overlying transverse humeral ligament. During the motion from external to internal rotation, the tendon is forced medially against the lesser tubercle and superiorly against the transverse ligament. monarch-merged.owl caput longum musculus bicipitis brachii|caput longum (musculus biceps brachii)|capus longum of biceps brachii|long head of biceps brachii muscle FMA:37683|EMAPA:25054|Wikipedia:Biceps_brachii_muscle#Origin_and_insertion uberon owl:Class UBERON:0007169 biolink:NamedThing short head of biceps brachii Proximally (towards the body), the short head of the biceps attaches to (originates from) the coracoid process at the top of the scapula. monarch-merged.owl caput breve (musculus biceps brachii)|caput breve musculus bicipitis brachii|short head of biceps brachii muscle|caput breve of biceps bracii Wikipedia:Biceps_brachii_muscle#Origin_and_insertion|FMA:37682|EMAPA:25055 uberon owl:Class UBERON:0007213 biolink:NamedThing mesenchyme derived from head neural crest Mesenchyme that develops_from a cranial neural crest. monarch-merged.owl head neural crest derived mesenchyme|head mesenchyme from cranial neural crest|head mesenchyme from neural crest EMAPA:16271|EFO:0003572|EMAPA_RETIRED:16271|ZFA:0000787|EHDAA2:0000735|EMAPA:16169|TAO:0000787 uberon owl:Class UBERON:0007223 biolink:NamedThing osseus cochlea The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve. monarch-merged.owl MA:0000239|EMAPA:35620 TODO - check this. in MA, cochlea is not part of the bony labyrinth uberon owl:Class UBERON:0007237 biolink:NamedThing 1st arch mandibular component monarch-merged.owl ventral visceral arch 1|ventral pharyngeal arch 1|ventral mandibular arch EHDAA2:0000031|VHOG:0000510|EHDAA:583|EMAPA:16382 relationship to Meckel's cartilage to be added uberon owl:Class Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] UBERON:0007238 biolink:NamedThing 1st arch maxillary component monarch-merged.owl EHDAA2:0000038|EMAPA:16388|EHDAA:595|VHOG:0000511 relationship to palatoquadrate to be added uberon owl:Class Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] UBERON:0007302 biolink:NamedThing pectoral appendage vasculature A vasculature that is part of a pectoral appendage. monarch-merged.owl pectoral fin vasculature TAO:0005096|ZFA:0005096 uberon owl:Class UBERON:0007303 biolink:NamedThing pharyngeal vasculature A vasculature that is part of a chordate pharynx. monarch-merged.owl branchial vasculature TAO:0005003|ZFA:0005003 uberon owl:Class UBERON:0007311 biolink:NamedThing sputum Matter ejected from the lungs, bronchi, and trachea, through the mouth. monarch-merged.owl expectoration UMLS:C0038056|EMAPA:36553|MA:0002536|BTO:0001297|NCIT:C13278|MESH:D013183|FMA:312401|GAID:1171|CALOHA:TS-0963 uberon owl:Class UBERON:0007352 biolink:NamedThing stria vascularis vasculature Blood vessels supplying the stria vascularis in the cochlea of the inner ear. monarch-merged.owl stria vascularis blood vessel|stria vascularis blood vessels uberon owl:Class UBERON:0007356 biolink:NamedThing crop A pouched enlargement of the gullet of many birds that serves as a receptacle for food and for its preliminary maceration. monarch-merged.owl esophageal diverticulum|esophageal pouch Wikipedia:Crop_(anatomy)#Birds|SCTID:68028003|BTO:0000301|NCIT:C111162 we follow WP and place as part of the esophagus uberon owl:Class Aves specific structure - consider adding functional grouping class. Kardong: some cetaceans have a crop-like structure UBERON:0007367 biolink:NamedThing surface of tongue An anatomical surface that is part of a tongue. monarch-merged.owl tongue surface SCTID:314870004|FMA:54647 uberon owl:Class UBERON:0007376 biolink:NamedThing outer epithelium The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. monarch-merged.owl outer epidermal layer|epidermis|outer epithelial layer|epidermis (sensu Metazoa)|hypodermis|hypoderm BSA:0000073|BTO:0000313|Wikipedia:Epidermis_(zoology)|FBbt:00004993|HAO:0000298|TADS:0000109|WBbt:0005733 this grouping class exists primarily to align with GO - see GO:0008544. uberon owl:Class UBERON:0007378 biolink:NamedThing egg yolk The yellow spheroidal mass of stored food that forms the inner portion of the egg of a bird or reptile and is surrounded by the white. monarch-merged.owl yolk ncithesaurus:Egg_Yolk|BTO:0000371|Wikipedia:Yolk|MESH:A16.631.325|VHOG:0001742|AAO:0010579 uberon owl:Class Extraembryonic structure that serves as a nutrient store for the embryo during development.[AAO] The majority of animals develop from a spherical egg with a single axis, the animal-vegetal (an-veg) axis. The animal half of the egg usually contains the nucleus of the oocyte, while the vegetal half of the egg is the preferred site for the storage of yolk. Eggs with an-veg polarity are considered ancestral for the vertebrates. Frogs, for example, have eggs with vegetally concentrated yolk and the nucleus located in the animal cytoplasm.[well established][VHOG] nutrient store UBERON:0007379 biolink:NamedThing shelled egg The hard-shelled reproductive body produced by a bird (especially by the common domestic chicken) or a reptile; also: its contents used as food. monarch-merged.owl egg Wikipedia:Egg_(biology)|BSA:0000081|BTO:0000369 uberon owl:Class UBERON:0007383 biolink:NamedThing enveloping layer of ectoderm Outermost layer of cells surrounding the embryo. monarch-merged.owl EVL|enveloping layer ZFA:0000086|EFO:0003425|TAO:0000086 uberon owl:Class Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm. Kimmel et al, 1995.[TAO] relationship loss: develops_from superficial blastomere (TAO:0001484)[TAO] Originally this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm. UBERON:0007389 biolink:NamedThing paired limb/fin cartilage A cartilage tissue that is part of a paired limb or fin. monarch-merged.owl TAO:0001543|ZFA:0001543 uberon owl:Class Cartilage which is part of one of the paired fins.[TAO] UBERON:0007524 biolink:NamedThing dense mesenchyme tissue Mesenchyme with little extracellular matrix. monarch-merged.owl AEO:0000146|EHDAA2:0003146 EHDAA2:0003146 uberon owl:Class UBERON:0007529 biolink:NamedThing loose mesenchyme tissue Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix. monarch-merged.owl AEO:0000151|EHDAA2:0003151 EHDAA2:0003151 uberon owl:Class UBERON:0007574 biolink:NamedThing apical epidermal cap monarch-merged.owl apical epidermal caps|apical epithelial cap TAO:0005148|ZFA:0005148 uberon owl:Class Part of the regeneration epithelium closest to the fin.[TAO] UBERON:0007618 biolink:NamedThing synovial cavity of hip joint A synovial cavity of joint that is part of a hip joint. monarch-merged.owl FMA:9701|EMAPA:19021 uberon owl:Class UBERON:0007656 biolink:NamedThing lateral recess of fourth ventricle The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space. monarch-merged.owl fourth ventricle lateral recess|recessus lateralis (ventriculi quarti)|lateral recess|lateral recess of the 4th ventricle|recessus lateralis ventriculi quarti SCTID:369283008|EMAPA:17257|MBA:153|DHBA:12810|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=642|BAMS:V4r|FMA:78470|BAMS:LR4V|Wikipedia:Lateral_recess http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png uberon owl:Class UBERON:0007657 biolink:NamedThing anular ligament of radius The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna. monarch-merged.owl anular ligament|annular ligament of radius|ligamentum anulare radii|orbicular ligament of radius FMA:38872|SCTID:182394000|EMAPA:19322|Wikipedia:Anular_ligament_of_radius uberon owl:Class UBERON:0007689 biolink:NamedThing thyroid diverticulum endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP].|Endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP]. monarch-merged.owl diverticulum thyroideum|saccus thyroideus Wikipedia:Thyroid_diverticulum uberon owl:Class UBERON:0007779 biolink:NamedThing transudate Any bodily fluid that has passed through a membrane such as the capillary wall, as a result of unbalanced hydrostatic and osmotic forces.|Any bodily fluid that has passed through a membrane such as the capillary wall, as a result of unbalanced hydrostatic and osmotic forces monarch-merged.owl plasma ultrafiltrate GAID:1195|ncithesaurus:Transudate|MESH:D005122|FMA:12276 uberon owl:Class transudative characteristically low in protein and cellular content (unless there has been secondary concentration) UBERON:0007807 biolink:NamedThing connecting stalk vasculature A vasculature that is part of a connecting stalk. monarch-merged.owl connecting stalk blood vessels|connecting stalk blood vessel|vasculature of connecting stalk EHDAA2:0000313 uberon owl:Class UBERON:0007844 biolink:NamedThing cartilage element Skeletal element that is composed of cartilage tissue and may be permanent or transient. monarch-merged.owl cartilaginous element|cartilage|chondrogenic element|cartilage organ ZFA:0001501|VSAO:0000000|CALOHA:TS-0118|AAO:0011130|FMA:55107|EMAPA:32730|XAO:0004013 uberon owl:Class TAO still mixes tissue and element UBERON:0007845 biolink:NamedThing regular connective tissue Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular connective tissue. monarch-merged.owl FMA:20103 the connective tissue hierarchy largely follows FMA with definitions from VSAO. Note that in FMA, loose-CT is irregular-CT. This means regular-CT is necessarily equivalent to dense-regular-CT (assuming a JEPD classification). uberon owl:Class UBERON:0008115 biolink:NamedThing surface of cartilage A anatomical surface that is part of a cartilage element.|An anatomical surface that is part of a cartilage element. monarch-merged.owl cartilage surface FMA:76668 uberon owl:Class UBERON:0008203 biolink:NamedThing pelvic cavity The part of the ventral body cavity that is within the pelvis. monarch-merged.owl cavitas pelvis|space of pelvic compartment SCTID:281903009|MA:0003089|EMAPA:37235|FMA:9738|Wikipedia:Pelvic_cavity http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg uberon owl:Class UBERON:0008253 biolink:NamedThing Aristotle's lantern Within the mouth of a sea urchin is an elaborate five-sided jaw structure called Aristotles lantern that can be partially extruded from the mouth. It is able to grind up calcareous exoskeletons of plants and animals. monarch-merged.owl Aristotles lantern http://animaldiversity.ummz.umich.edu/site/resources/biodidac/echino001B.gif/medium.jpg|http://content60.eol.org/content/2012/06/14/21/52446_580_360.jpg|Wikipedia:Aristotle's_lantern|BTO:0001923|http://eol.org/data_objects/19677434 uberon owl:Class UBERON:0008275 biolink:NamedThing carapace Dorsal subdivision of turtle shell, consisting of the animal's ribcage combined with dermal bone[WP, modified]. monarch-merged.owl chelonian carapace|upper shell|dorsal armor|dorsal shell SCTID:33620004|BTO:0001701|Wikipedia:Carapace#Turtles_and_tortoises uberon owl:Class BTO class is more general UBERON:0008281 biolink:NamedThing tooth bud A knoblike tooth primordium that develops into the mature tooth and consists of enamel organ, dental papilla, and dental sac enclosing them. monarch-merged.owl dental bud|tooth germ|dental germ FMA:306006|UMLS:C0040442|SCTID:53301001|BTO:0001838|NCIT:C34313|MESH:A14.254.900.720 uberon owl:Class UBERON:0008304 biolink:NamedThing inner chondrogenic layer of perichondrium The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes. monarch-merged.owl BTO:0005090|Wikipedia:The_Free_Encyclopedia uberon owl:Class UBERON:0008305 biolink:NamedThing outer fibrous layer of perichondrium The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers. monarch-merged.owl Wikipedia:The_Free_Encyclopedia|BTO:0005091 uberon owl:Class UBERON:0008716 biolink:NamedThing hilum of kidney An opening on medial margin of the kidney leading into the renal sinus. he renal vessels enter/leave the kidney at the hilum; the renal pelvis leaves the kidney at the hilum. monarch-merged.owl hilar area of the kidney|renal hilum FMA:15610|Wikipedia:Hilum_of_kidney|NCIT:C32740|UMLS:C0227608|galen:HilumOfKidney|SCTID:279370006 uberon owl:Class UBERON:0008780 biolink:NamedThing inner cell mass derived epiblast An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers|An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers. monarch-merged.owl embryonic epiblast EMAPA:16050|EHDAA:42|EHDAA:75|NCIT:C34164|EHDAA2:0000444|UMLS:C1516906 The epiblast cells (appearing on day 8 of human embryonic development) make up a columnar epithelium with dense microvilli on the apical surface. During gastrulation, the epiblast cells undergo epithelial-to-mesenchymal transition and delaminate to become the loose mesenchyme of the primitive streak. The epiblast is present in postimplantation mouse embryos between E5.5-E7.5. uberon owl:Class UBERON:0008781 biolink:NamedThing blastodisc derived epiblast An epiblast (generic) that develops_from a blastodisc. monarch-merged.owl TAO:0000018|ZFA:0000018 uberon owl:Class The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995.[TAO] relationship type change: subclass embryonic structure (VSAO:0000178) CHANGED TO: part_of embryonic structure (UBERON:0002050)[TAO]|relationship type change: subclass embryonic structure (VSAO:0000178) CHANGED TO: develops_from embryonic structure (UBERON:0002050)[TAO] part of blastodisc in BTO; indirect development in ZFA: df DEL df deep blastomere isa blastomere po blastodisc UBERON:0008791 biolink:NamedThing rugal fold of stomach A rugal fold that is part of a stomach. monarch-merged.owl gastric ruga|gastric ruga(e)|ruga of stomach|gastric rugae NCIT:C32660|FMA:15106|UMLS:C0227199|Wikipedia:Gastric_rugae|SCTID:268518001 uberon owl:Class UBERON:0008805 biolink:NamedThing gingival groove The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin. monarch-merged.owl sulcus gingivalis|tooth-gingiva interface|gingival sulcus FMA:74580|SCTID:245753001|Wikipedia:Gingival_sulcus|NCIT:C114645 Gingival:sulcus.PNG uberon owl:Class UBERON:0008809 biolink:NamedThing foramina of scarpa In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. monarch-merged.owl foramina of scarpa Wikipedia:Foramina_of_Scarpa http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png uberon owl:Class UBERON:0008814 biolink:NamedThing pharyngeal arch system A transient embryonic complex that comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming, which may include (depending on species) the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear[GO,modified]. monarch-merged.owl pharyngeal complex|pharyngeal arches and clefts|pharyngeal arch region|pharyngeal arch complex|pharyngeal apparatus|embryonic pharyngeal complex|pharyngeal system FMA:293041|EHDAA2:0000187|NCIT:C34248|UMLS:C1519038 Currently defined in a vertebrate specific manner. The arch system has origins in basal deuterostomes, consider generalizing uberon owl:Class UBERON:0008846 biolink:NamedThing skeletal ligament Dense regular connective tissue connecting two or more adjacent skeletal elements[VSAO,modified]. monarch-merged.owl ligament|articular ligament|articular larua|true ligament EHDAA2:0003232|AAO:0010444|EV:0100144|SCTID:410744003|FMA:25624|CALOHA:TS-2146|VSAO:0000072|GAID:118|Wikipedia:Ligament#Articular_ligaments|AEO:0000090|MA:0003005 Knee:diagram.svg logical definition deliberately made strict to avoid classifying MA:spiral ligament as both nonskeletal and skeletal. see https://github.com/obophenotype/mouse-anatomy-ontology/issues/71 uberon owl:Class Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ.[VSAO]|Ligament organ that primarily consists of regular dense connective tissue aggregated into fasciculi; connects bone and cartilage organs. Examples: sutural ligament, ligament of pinna, tarsal ligament[FMA:25624]. UBERON:0008851 biolink:NamedThing ectoplacental cavity Closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals.|closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals monarch-merged.owl epamniotic cavity EMAPA:16080 uberon owl:Class UBERON:0008867 biolink:NamedThing trabecular network of bone The network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force|The network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force. monarch-merged.owl bone trabecula|bone trabeculae UMLS:C2826619|NCIT:C82999 consider revision - we have 3 classes, the tissue itself, the network, and the spaces. uberon owl:Class UBERON:0008894 biolink:NamedThing pharyngeal gill precursor A primordium or bud that develops into a gill. monarch-merged.owl gill primordium|internal gill buds|external gill anlage|internal gill bud XAO:0000448|TAO:0001107|ZFA:0001107 uberon owl:Class UBERON:0008902 biolink:NamedThing lateral recess of third vetricle Lateral protrusion of the third ventricle. monarch-merged.owl lateral recesses|lateral recess of diencephalic ventricle|lateral recess ZFA:0000231|TAO:0000231 uberon owl:Class UBERON:0008944 biolink:NamedThing albumen Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo. monarch-merged.owl egg white GO:0097099|BTO:0000370|ncithesaurus:Egg_White|Wikipedia:Albumen uberon owl:Class UBERON:0008947 biolink:NamedThing respiratory primordium monarch-merged.owl UMLS:C1514898|EHDAA2:0004069|NCIT:C34283 uberon owl:Class UBERON:0008960 biolink:NamedThing melon organ The melon is an ovoid-shaped, fatty organ found in the forehead of all toothed whales (odontocetes), including dolphins and porpoises (Cranford et al., 1996; Harper, C. J., et al., 2008) and believed to be used in echolocation. monarch-merged.owl melon Wikipedia:Melon_(whale) uberon owl:Class UBERON:0008971 biolink:NamedThing left colon The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste. monarch-merged.owl distal colon SCTID:362164005|UMLS:C0227388|galen:LeftColon|BTO:0000646|CALOHA:TS-0202|NCIT:C33929 uberon owl:Class UBERON:0008972 biolink:NamedThing right colon The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption. monarch-merged.owl proximal colon galen:RightColon|NCIT:C12383|SCTID:362161002|BTO:0000649|UMLS:C1305188 uberon owl:Class UBERON:0008987 biolink:NamedThing renal parenchyma The functional tissue of the kidney, consisting of the nephrons. monarch-merged.owl parenchyma of kidney|kidney parenchyma BTO:0003604|FMA:15574|SCTID:29704000 uberon owl:Class UBERON:0009038 biolink:NamedThing sulcus ampullaris The groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest. monarch-merged.owl ampullary sulcus|ampullary groove SCTID:368954006|MA:0002835|FMA:74584 uberon owl:Class UBERON:0009095 biolink:NamedThing tip of renal papilla monarch-merged.owl papillary tip|papillary tips KUPO:0001009 uberon owl:Class UBERON:0009099 biolink:NamedThing typhlosole An invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development. monarch-merged.owl Wikipedia:Typhlosole uberon owl:Class UBERON:0009100 biolink:NamedThing nephric fold . monarch-merged.owl Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules uberon owl:Class UBERON:0009122 biolink:NamedThing adenohypophyseal placode The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary|The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary. monarch-merged.owl pituitary placode XAO:0004208|ZFA:0001198|EFO:0000229|TAO:0001198 consider adding more detailed spatial placement - e.g. oral ectoderm and/or rostal ectoderm uberon owl:Class Fate-mapping studies in amphibian, chick and mouse embryos (Eagleson et al., 1986; 1995; Couly and Le Douarin, 1985; Cobos et al., 2001; Osumi-Yamachita et al., 1994; Kawamura et al., 2002) have shown that the cells contributing to the adenohypophysis develop at the midline of the anterior neural ridge, which delineates the rostral boundary of the neural plate, a region devoid of neural crest. The anterior neural ridge also gives rise to the olfactory placodes and some forebrain tissues including the olfactory bulbs (reviewed in Papalopulu, 1995). Ablation of this region in chick embryos at the 2-4 somite stage confirmed these lineage analyses as it prevented formation of Rathke's pouch and any further pituitary development (elAmraoui and Dubois, 1993). Upon head folding, the oral ectoderm cells of the adenohypophyseal placode invaginate towards the prospective ventral diencephalon to form Rathke's pouch, the anlage of the adenohypophysis. Rathke's pouch starts as an invagination of the oral ectoderm in response to inductive signals from the prospective diencephalon. The region of the diencephalon above the pouch is known as the infundibulum and forms the posterior lobe of the pituitary or neurohypohysis (Figure 3). While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke's pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head (reviewed in Pogoda and Hammerschmidt; 2009) UBERON:0009130 biolink:NamedThing dorsal meso-duodenum monarch-merged.owl SCTID:361433003|RETIRED_EHDAA2:0000411 uberon owl:Class UBERON:0009145 biolink:NamedThing pharyngeal region of foregut monarch-merged.owl pharyngeal region RETIRED_EHDAA2:0001454|EMAPA:16549 uberon owl:Class UBERON:0009195 biolink:NamedThing anal membrane The dorsal part of the cloacal membrane following its partition by the urorectal septum. monarch-merged.owl SCTID:344130000|EHDAA2:0004018|UMLS:C1288337|NCIT:C34105 During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] uberon owl:Class UBERON:0009210 biolink:NamedThing pharyngeal membrane A thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo. monarch-merged.owl pharyngeal membrane|branchial arch membrane|branchial membrane EMAPA:32749|UMLS:C1519040|FMA:295758|NCIT:C34251 each membrane is initially composed of an inner layer formed by the endodermal lining of a branchial pouch and an outer layer formed by the ectodermal lining of the branchial groove; later, these two layers become separated by a thin layer of mesoderm; only the first branchial membrane contributes to the formation of an adult structure, i.e. the tympanic membrane (aka eardrum); the second, third, and fourth membranes are obliterated[MP] uberon owl:Class In all vertebrates, the endodermal epithelium lining each pouch contacts the surface ectoderm of the clefts to form a series of bilayered branchial membranes, that break down in fish to form the gill openings.[well established][VHOG] UBERON:0009471 biolink:NamedThing dorsum of tongue The superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis). monarch-merged.owl dorsum linguae|tongue dorsum|dorsal tongue FMA:54651|SCTID:66938003|NCIT:C32482|UMLS:C0226952 uberon owl:Class UBERON:0009481 biolink:NamedThing cavity of pericardio-peritoneal canal A tube lumen that is part of a pericardio-peritoneal canal. monarch-merged.owl cavity of the pericardio-peritoneal canal EHDAA2:0001441|EMAPA:16283|VHOG:0000564 uberon owl:Class UBERON:0009482 biolink:NamedThing associated mesenchyme of foregut-midgut junction Mesenchyme that is part of a foregut-midgut junction. monarch-merged.owl EHDAA2:0000570|EMAPA:16364 uberon owl:Class UBERON:0009494 biolink:NamedThing pharyngeal arch mesenchymal region A portion of mesenchymal tissue associated with an individual pharyngeal arch. monarch-merged.owl pharyngeal arch mesenchyme|branchial arch mesenchyme FMA:295694|EMAPA:32755 this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. uberon owl:Class UBERON:0009503 biolink:NamedThing mesenchyme of hindgut Mesenchyme that is part of a developing hindgut. monarch-merged.owl hindgut associated mesenchyme EHDAA2:0000780|EMAPA:16716 uberon owl:Class UBERON:0009571 biolink:NamedThing ventral midline In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate. monarch-merged.owl FBbt:00000093 uberon owl:Class UBERON:0009572 biolink:NamedThing lumen of central canal of spinal cord A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube. monarch-merged.owl spinal cord lumen|cavity of central canal of spinal cord|neural lumen|central canal lumen EMAPA:25042|Wikipedia:Central_canal|FMA:242845 uberon owl:Class UBERON:0009573 biolink:NamedThing sulcus limitans of fourth ventricle In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP]. monarch-merged.owl s. limitans fossae rhomboideae|sulcus limitans UMLS:C0262332|NCIT:C33656|Wikipedia:Sulcus_limitans|BAMS:slm|DHBA:12823|BAMS:slim|FMA:78496|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=629 http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png uberon owl:Class UBERON:0009612 biolink:NamedThing forebrain midbrain boundary neural plate monarch-merged.owl diencephalic-mesencephalic boundary neural plate ZFA:0007020|TAO:0007020 uberon owl:Class UBERON:0009617 biolink:NamedThing head paraxial mesoderm Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles. monarch-merged.owl cephalic paraxial mesenchyme|cephalic paraxial mesoderm|somitomeric mesoderm|cranial paraxial mesoderm|somitomere|cranial paraxial mesenchyme|head paraxial mesenchyme EHDAA2:0000736|EHDAA:364|EMAPA:16171 uberon owl:Class A major contributor to neurocranium [PMID:16313393] UBERON:0009618 biolink:NamedThing trunk paraxial mesoderm monarch-merged.owl trunk paraxial mesenchyme|trunk and cervical paraxial mesenchyme EHDAA2:0002094 uberon owl:Class UBERON:0009650 biolink:NamedThing cortical arch of kidney The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney. monarch-merged.owl renal cortical arch|cortical arches of kidney|cortex proper of kidney|renal cortex proper MA:0001650|EMAPA:37486|FMA:17876|NCIT:C32385|UMLS:C1511525 uberon owl:Class UBERON:0009651 biolink:NamedThing nephron tubule basement membrane A basement membrane that is part of a nephron tubule. monarch-merged.owl renal tubule basement membrane|kidney tubule basement membrane|renal tubular basement membrane UMLS:C1709901|EMAPA:37490|NCIT:C49273|SCTID:245251000|MA:0001680 uberon owl:Class UBERON:0009668 biolink:NamedThing ventral mesentery Ventral mesentery is the part of the peritoneum closest to the navel. monarch-merged.owl SCTID:361430000|EHDAA2:0004569|Wikipedia:Ventral_mesentery uberon owl:Class degenerates during development except foregut portion UBERON:0009670 biolink:NamedThing rectal lumen An anatomical space that surrounded_by a rectum. monarch-merged.owl lumen of rectum EMAPA:18388|SCTID:259740004|FMA:14598|EHDAA2:0004587 uberon owl:Class UBERON:0009714 biolink:NamedThing intermaxillary process The primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate. monarch-merged.owl globular process|globular processes of his|intermaxillary segment EHDAA:7856|FMA:295872|Wikipedia:Intermaxillary_segment|EHDAA2:0000868 requires verification. Note EHDAA2 has this as coming from both lateral and medial prominences. See also: median cleft lip uberon owl:Class UBERON:0009715 biolink:NamedThing stomodeal lumen An anatomical cavity that surrounded_by a stomodeum. monarch-merged.owl stomatodeal cavity|lumen of stomatodaeum|lumen of stomodeum uberon owl:Class UBERON:0009717 biolink:NamedThing coronal organ Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line. monarch-merged.owl BSA:0000122 uberon owl:Class UBERON:0009722 biolink:NamedThing entire pharyngeal arch endoderm monarch-merged.owl pharyngeal arch endoderm EMAPA:32754|EHDAA2:0004621|FMA:293087 uberon owl:Class UBERON:0009744 biolink:NamedThing lymph node medullary sinus The channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels|The channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels. monarch-merged.owl lymph node medullary sinusoid|medullary sinus EMAPA:37898|FMA:312359 Lymph flows into the medullary sinuses from cortical sinuses, and into efferent lymphatic vessels. Medullary sinuses contain histiocytes (immobile macrophages) and reticular cells.[WP] uberon owl:Class UBERON:0009745 biolink:NamedThing lymph node medullary cord The dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node.|The dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node monarch-merged.owl medullary cord EMAPA:37897 uberon owl:Class UBERON:0009749 biolink:NamedThing limb mesenchyme The primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells. monarch-merged.owl limb mesoderm EMAPA:32705 uberon owl:Class EMAPA mapping from TH UBERON:0009843 biolink:NamedThing prostate epithelial cord A solid cord of prostate epithelium. monarch-merged.owl epithelial cord of prostate|cord of prostate epithelium Complexity is conferred on the prostate during a postnatal development phase known as branching morphogenesis. Solid cords of prostate epithelium formed in utero elongate postnatally and their tips are bifurcated into primary, secondary, and tertiary branches in a pattern that is unique for each prostate lobe. Branching morphogenesis proceeds differentially for each of the three mouse prostate lobes (ventral, dorsolateral, and anterior) and is completed by about postnatal day 20 in mice, providing each lobe with unique glandular architecture [5]. It is important to note that the developing human prostate undergoes a similar series of morphogenetic events especially during prostatic bud formation, but gives rise to a mature glandular prostate that is unique from the rodent and features peripheral, central, and transitional zones[PMID:18977204] uberon owl:Class UBERON:0009844 biolink:NamedThing urogenital sinus lumen An anatomical space that surrounded_by a primitive urogenital sinus. monarch-merged.owl EHDAA2:0002142 uberon owl:Class UBERON:0009848 biolink:NamedThing zona limitans intrathalamica A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon. monarch-merged.owl ZLI|ZLI organizer|MDO|mid-diencephalic organizer ZFA:0001344|TAO:0001344|XAO:0004305|Wikipedia:Zona_limitans_intrathalamica|EMAPA:36604 Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17 uberon owl:Class The border between the dorsal and ventral thalamus.[TAO] UBERON:0009853 biolink:NamedThing body of uterus The part of the uterus above the isthmus and below the orifices of the uterine tubes. monarch-merged.owl uterine corpus|corpus uteri|uterine body UMLS:C0227813|EFO:0000382|SCTID:279878007|FMA:17739|CALOHA:TS-1265|NCIT:C12316 uberon owl:Class UBERON:0009857 biolink:NamedThing cavum septum pellucidum A space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum. monarch-merged.owl fifth ventricle|cavum septi pellucidi|ventriculus septi pellucidi|cave of septum pellucidum|septum pellucidum cave|cavum of septum pellucidum http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=257|SCTID:180933005|DHBA:12099|FMA:61874|NCIT:C32602|UMLS:C0228158|BTO:0003447|BAMS:CSP|Wikipedia:Cave_of_septum_pellucidum http://upload.wikimedia.org/wikipedia/commons/7/7d/CavumSeptumPellucidumDiagram.jpg uberon owl:Class In humans, present in 100% of fetuses, but over 85% of them fuse by 3-6 months after birth UBERON:0009858 biolink:NamedThing outer fibrous layer of periosteum monarch-merged.owl external periosteum|outer fibrous layer of periosteum|fibrous layer of periosteum|external layer of periosteum|capsular layer of periosteum FMA:234354 uberon owl:Class UBERON:0009864 biolink:NamedThing ascidian neural gland . monarch-merged.owl assumed to be a pituitary homolog. Current data from the Ciona genome suggests that the ascidian NC, including the CF, is unlikely to be a pituitary-like endocrine gland, while it is necessary to examine other ascidians before drawing a final conclusion [PMID:21558186] uberon owl:Class UBERON:0009867 biolink:NamedThing Hatschek's diverticulum monarch-merged.owl uberon owl:Class UBERON:0009871 biolink:NamedThing nephrogenic zone Outer portion of the renal cortex. Site of formation of medullary and cortical elements. monarch-merged.owl nephrogenic tissue|cortical nephrogenic zone|cortical nephrogenic niche EMAPA:27721|http://www.gudmap.org/Images/Organ_Summaries/Metanephros/NZ.png|MA:0002996 uberon owl:Class see http://www.ncbi.nlm.nih.gov/pubmed/12761251 for description of nephrogenic zone in dogfish. UBERON:0009883 biolink:NamedThing medullary ray A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla. monarch-merged.owl renal medullary ray|Ferrein's pyramid|kidney medullary ray BTO:0001155|FMA:74299|Wikipedia:Bone_marrow_of_ovaryry_ray_(anatomy)|EMAPA:37906 uberon owl:Class FMA says parenchyma, MP says cortex Their name is potentially misleading -- the 'medullary' refers to their destination, not their location. They are located only in the renal cortex, and not in the renal medulla UBERON:0009890 biolink:NamedThing anterior intestinal portal Opening of the foregut into the midgut. monarch-merged.owl fovea cardiaca uberon owl:Class UBERON:0009913 biolink:NamedThing renal lobe The portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it[MP]. It is composed of many renal lobules[WP]. monarch-merged.owl lobi renalis|lobus renalis|kidney lobe|lobi renales UMLS:C0736382|NCIT:C32894|Wikipedia:Renal_lobe|FMA:17881 Kidney:PioM.png todo - add has_part relationships. uberon owl:Class human kidneys have multilobar (multipyramidal) architecture while mice and rats have unilobar (unipyramidal) kidneys UBERON:0009914 biolink:NamedThing renal lobule The portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys|The portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys. monarch-merged.owl cortical lobule of kidney|renculus|renunculus|lobulus renalis|kidney lobule|cortical lobule|lobulus corticalis renalis|lobuli corticales renis|renal cortical lobule|reniculus FMA:17670|Wikipedia:Cortical_lobule|SCTID:361330004 Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis uberon owl:Class UBERON:0009917 biolink:NamedThing kidney corticomedullary boundary The region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary.|The region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary monarch-merged.owl EMAPA:37886 uberon owl:Class UBERON:0009955 biolink:NamedThing neurogenic placode Cranial ectodermal placode with potential to develop into a component of the nervous system, such as nerves or ganglia. monarch-merged.owl placodae neurogenicae|neurogenic placodes ZFA:0001309|XAO:0004620|EFO:0003460|TAO:0001309|Wikipedia:Neurogenic_placodes Includes: trigeminal, otic, lateral line and epibranchial placodes. uberon owl:Class While some sensory placodes (otic and olfactory) may have homologues in basal chordates (Wada et al., 1998), the so-called neurogenenic placodes (trigeminal, otic, lateral line and epibranchial placodes) appear to have emerged at a later time (Shimeld and Holland, 2000) UBERON:0009958 biolink:NamedThing bladder lumen A anatomical space that is enclosed by a urinary bladder.|An anatomical space that is enclosed by a urinary bladder. monarch-merged.owl urinary bladder lumen|lumen of urinary bladder|cavity of urinary bladder|bladder cavity galen:UrinaryBladderCavity|EHDAA2:0004058|SCTID:279405003|FMA:15924 uberon owl:Class UBERON:0009959 biolink:NamedThing lumen of oropharynx A anatomical space that is enclosed by a oropharynx.|An anatomical space that is enclosed by a oropharynx. monarch-merged.owl oropharyngeal cavity|oropharynx lumen EHDAA2:0004556|FMA:55095 uberon owl:Class UBERON:0009974 biolink:NamedThing lumen of Rathke's pouch An anatomical cavity that surrounded_by a Rathke's pouch. monarch-merged.owl Rathkes pouch invagination EMAPA:25037|EHDAA2:0004138 uberon owl:Class UBERON:0009975 biolink:NamedThing remnant of lumen of Rathke's pouch monarch-merged.owl adenohypophysis invagination EHDAA2:0004139 requires review uberon owl:Class UBERON:0010009 biolink:NamedThing aggregate regional part of brain A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]. monarch-merged.owl set of nuclei of neuraxis NLXANAT:20090509|FMA:256381 May be obsoleted. uberon owl:Class UBERON:0010016 biolink:NamedThing spiral valve of intestine Coiled structure in the lumen of the small intestine that increases the length of the route through the digestive tract.[WP,cjm,Kardong]. monarch-merged.owl intestinal spiral valve|spiral valve Wikipedia:Spiral_valve uberon owl:Class UBERON:0010039 biolink:NamedThing food storage organ An organ of the digestive tract that is capable of retaining and storing food|An organ of the digestive tract that is capable of retaining and storing food. monarch-merged.owl TGMA:0001041|TADS:0000172|BSA:0000123 This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates uberon owl:Class UBERON:0010046 biolink:NamedThing entire pharyngeal arch associated mesenchyme The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells. monarch-merged.owl associated mesenchyme of pharyngeal region|entire branchial arch associated mesenchyme|pharyngeal arch associated mesenchyme EMAPA:16550|EHDAA2:0001459|XAO:0004524 uberon owl:Class UBERON:0010056 biolink:NamedThing future tongue A compound organ that has the potential to develop into a tongue. monarch-merged.owl EHDAA2:0000696|EHDAA:2951 uberon owl:Class UBERON:0010057 biolink:NamedThing hypopharyngeal eminence monarch-merged.owl hypobranchial eminence SCTID:361420009|EHDAA2:0000799|EMAPA:17352 uberon owl:Class UBERON:0010060 biolink:NamedThing pharyngeal opening of pharyngotympanic tube On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane. monarch-merged.owl pharyngeal opening of auditory tube|ostium pharyngeum tubae auditivae|pharyngeal ostium of pharyngotympanic tube|pharyngeal orifice of pharyngotympanic tube|pharyngeal orifice of eustachian tube|pharyngeal ostium of eustachian tube|pharyngeal orifice of auditory tube|pharyngeal tubal ostium|pharyngeal ostium of auditory tube|pharyngeal ostium|ostium pharyngeum tubae auditoriae|pharyngeal opening of eustachian tube Wikipedia:Pharyngeal_opening_of_auditory_tube|SCTID:368945008|FMA:54979 http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray1029.png uberon owl:Class UBERON:0010061 biolink:NamedThing lumen of nasopharynx monarch-merged.owl nasopharynx lumen|nasopharyngeal luman|nasopharynx cavity FMA:55094 uberon owl:Class UBERON:0010076 biolink:NamedThing network of trabecular spaces in bone tissue Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone. monarch-merged.owl trabecular network of bone tissue|trabecular space network FMA:259332 uberon owl:Class UBERON:0010083 biolink:NamedThing future dermis Mesenchyme that has the potential to develop into a dermis. monarch-merged.owl EHDAA2:0000598 check development uberon owl:Class UBERON:0010123 biolink:NamedThing future facial nucleus A gray matter that has the potential to develop into a facial nucleus. monarch-merged.owl EHDAA2:0004639 uberon owl:Class UBERON:0010124 biolink:NamedThing future inferior salivatory nucleus A gray matter that has the potential to develop into a inferior salivatory nucleus. monarch-merged.owl EHDAA2:0004643 TODO - devfrom uberon owl:Class UBERON:0010125 biolink:NamedThing future superior salivatory nucleus A gray matter that has the potential to develop into a superior salivatory nucleus. monarch-merged.owl EHDAA2:0004644 uberon owl:Class UBERON:0010126 biolink:NamedThing future nucleus ambiguus A gray matter that has the potential to develop into a nucleus ambiguus. monarch-merged.owl EHDAA2:0004647 uberon owl:Class UBERON:0010133 biolink:NamedThing neuroendocrine gland Any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli.|any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli monarch-merged.owl neuroendocrine system gland MA:0000720 uberon owl:Class UBERON:0010153 biolink:NamedThing rumen papilla monarch-merged.owl rumen papillae SCTID:43386000 uberon owl:Class UBERON:0010161 biolink:NamedThing lumen of blood vessel An anatomical cavity that surrounded_by a blood vessel. monarch-merged.owl blood vessel lumen SCTID:91747007|FMA:312610 uberon owl:Class UBERON:0010164 biolink:NamedThing collection of hairs An anatomical cluster that composed_primarily_of a strand of hair. monarch-merged.owl set of hairs|pili|hairs|hairs set FMA:70752 uberon owl:Class UBERON:0010170 biolink:NamedThing region of neural crest monarch-merged.owl TAO:0000045|ZFA:0000045|EMAPA:32737 uberon owl:Class A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. Kimmel et al, 1995.[TAO] UBERON:0010190 biolink:NamedThing pair of dorsal aortae The paired arterial structures of the embryo that supplies each developing somite via efferent segmental arteries; the dorsal aortae articulate with the umbilical arteries, which return mixed blood to the villi of the chorion for reoxygenation.|the paired arterial structures of the embryo that supplies each developing somite via efferent segmental arteries; the dorsal aortae articulate with the umbilical arteries, which return mixed blood to the villi of the chorion for reoxygenation monarch-merged.owl paired dorsal aortae EHDAA2:0000410|EMAPA:18606|MA:0000476 uberon owl:Class UBERON:0010204 biolink:NamedThing tail vasculature A vasculature that is part of a post-anal tail. monarch-merged.owl tail vasculature|post-vent vasculature ZFA:0005037|TAO:0005037|XAO:0004151 uberon owl:Class isa blood vessel in XAO UBERON:0010210 biolink:NamedThing blood clot A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network. monarch-merged.owl thrombus|coagulated blood|hemostatic plug|fibrin clot|clot BTO:0000102|Wikipedia:Thrombus|galen:BloodClot uberon owl:Class UBERON:0010211 biolink:NamedThing granulation tissue Highly vascularized tissue that replaces the initial fibrin clot in a wound. Vascularization is by ingrowth of capillary endothelium from the surrounding vasculature. The tissue is also rich in fibroblasts (that will eventually produce the fibrous tissue) and leucocytes. monarch-merged.owl BTO:0003257|MESH:D006097 uberon owl:Class UBERON:0010227 biolink:NamedThing future cardiac atrium Multi-tissue structure that is part of the heart tube and will become the cardiac atrium. monarch-merged.owl primordial atrium|primordial cardiac atrium|presumptive atrium heart tube FMA:71005|ZFA:0001718|TAO:0002228 uberon owl:Class UBERON:0010228 biolink:NamedThing ruminal fluid A portion of organism substance that is produced a rumen. monarch-merged.owl BTO:0004789 uberon owl:Class UBERON:0010238 biolink:NamedThing torus pylorus A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal. monarch-merged.owl torus pyloricus SCTID:14214007 uberon owl:Class UBERON:0010276 biolink:NamedThing space in vertebral column Any anatomical space that is part of a vertebral column. monarch-merged.owl vertebral conduit|vertebral column opening AAO:0000700 uberon owl:Class UBERON:0010277 biolink:NamedThing mesocardium The part of the embryonic mesentery which connects the embryonic heart with the body wall in front and the foregut behind. monarch-merged.owl cardiac mesentery MA:0000098|EMAPA:16212 consider merging with heart mesentery uberon owl:Class mesocardial UBERON:0010279 biolink:NamedThing pericardial sinus There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery. monarch-merged.owl oblique pericardial|oblique sinus|pericardial sinuses|transverse pericardial sinus|oblique pericardial sinus|transverse pericardial Wikipedia:Pericardial_sinus|SCTID:314273005 http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png uberon owl:Class UBERON:0010299 biolink:NamedThing scleral mesenchyme Mesenchyme surrounding the developing optic cup which develops into the sclera. monarch-merged.owl uberon owl:Class The mesenchyme surrounding the developing optic cup differentiates into the sclera, the dense fibrous coat of the eye.. http://www.ncbi.nlm.nih.gov/pubmed/16496288 UBERON:0010300 biolink:NamedThing epithelial scleral papilla layer monarch-merged.owl scleral papillae uberon owl:Class Scleral papillae (which induce scleral ossicles in birds) have not been reported in teleosts, but evidence for their presence may not have been sought The scleral ossicles are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991) UBERON:0010312 biolink:NamedThing immature eye Developing anatomical structure that develops into the eyeball and associated structures. monarch-merged.owl future eye ZFA:0001678|TAO:0002201 uberon owl:Class Multi-tissue structure that consists of the structures that develop into the retina and lens.[TAO] UBERON:0010314 biolink:NamedThing structure with developmental contribution from neural crest An anatomical structure that has some part that develops from the neural crest. monarch-merged.owl Grouping term for query purposes uberon owl:Class UBERON:0010316 biolink:NamedThing germ layer / neural crest monarch-merged.owl uberon owl:Class UBERON:0010384 biolink:NamedThing lumen of laryngopharynx An anatomical space that is enclosed by a hypopharynx.|A anatomical space that is enclosed by a hypopharynx. monarch-merged.owl laryngopharynx lumen FMA:55096 uberon owl:Class UBERON:0010390 biolink:NamedThing lumen of urethra An organ cavity that is part of a urethra. monarch-merged.owl urethral lumen SCTID:279432008|FMA:19709 uberon owl:Class UBERON:0010394 biolink:NamedThing lymphocyte domain monarch-merged.owl TODO - check uberon https://github.com/obophenotype/uberon/issues/513 owl:Class UBERON:0010403 biolink:NamedThing brain marginal zone The part of the future brain that is derived from the mantle layer of the neural tube. monarch-merged.owl brain marginal zone MA:0000812|EMAPA:32680|DHBA:10508 uberon owl:Class not clear if the MA/EMAPA classes refer specifically to the cortical subset. DHBA class incldues non-neocortex derivatives so it belongs here UBERON:0010518 biolink:NamedThing pelvic fin clasper The rod-like extension of the medial portion of the pelvic fin in male Elasmobranchii and Holocephali. Claspers are used as intromittent organs (not in clasping), the grooves on their facing surfaces together forming a tube for the transmission of sperm when the claspers are held together. The anterior proximal opening is called the apopyle, the posterior distal opening the rhipidion. monarch-merged.owl clasper|myxopterygium uberon owl:Class UBERON:0010536 biolink:NamedThing nephron progenitor monarch-merged.owl uberon owl:Class UBERON:0010712 biolink:NamedThing limb skeleton subdivision Skeletal subdivision that is a segment of the limb skeleton. monarch-merged.owl VSAO:0005018 note the distinction between this and skeleton of limb uberon owl:Class UBERON:0010724 biolink:NamedThing lateral tubercle of talus An accessory bone tubercle which if present lies posterior to the talus. monarch-merged.owl os trigonum of talus|os trigonum|accessory talus|tuberculum laterale (talus) FMA:33655|Wikipedia:Os_trigonum|SCTID:87573005 uberon owl:Class UBERON:0010743 biolink:NamedThing meningeal cluster The collection of all meningeal layers that line a central nervous system. monarch-merged.owl meninges|cluster of meninges|cerebral meninges FMA:231572|SCTID:362879001|UMLS:C0228116|EHDAA2:0004661|NCIT:C12349|EMAPA:32660|Wikipedia:Meninges|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1465 uberon owl:Class meningeal In some primitive organisms, the meningeal cluster includes only the primitive meninx UBERON:0010751 biolink:NamedThing squamous part of temporal bone primordium monarch-merged.owl squamosal bone primordium|squamosal primordium EHDAA:9536|EHDAA2:0001907 uberon owl:Class UBERON:0010899 biolink:NamedThing synchronous hermaphroditic organism Hermaphroditic organism that produces both male and female gametes at the same time. monarch-merged.owl simultaneous hermaphroditic organism|serially hermaphroditic organism HAO:0000046|AAO:0010046|CARO:0000046|TADS:0000609|BILA:0000046 uberon owl:Class UBERON:0010905 biolink:NamedThing clavicle bone primordium A primordium that develops into a clavicle bone. monarch-merged.owl clavicle primordium EHDAA2:0000254 lateral part derives from a fish dermal bone while the medial part comes from a spur off the manubrium endochondral bone[JB] uberon owl:Class UBERON:0010913 biolink:NamedThing vertebral element Skeletal element that forms around the notochord and is part of the vertebral column. monarch-merged.owl vertebra endochondral element|vertebra skeletal element|vertebral endochondral element|vertebra element VSAO:0000184|VHOG:0001143 we include a distinct subclass for bony vertebra UBERON:0015005 uberon owl:Class In contrast to lampreys and jawed vertebrates, hagfishes were thought to lack vertebrae. Now, long overlooked vertebral rudiments have been analysed in hagfish, suggesting that vertebrae existed in the last common ancestor of all vertebrates.[well established][VHOG] vertebral Typically an endochondral element, in salamanders there is an argument that vertebral development is perichondral and not preformed in cartilage UBERON:0011078 biolink:NamedThing endolymphatic space Endolymph-filled space contained by the membranous labyrinth. monarch-merged.owl FMA:77823|SCTID:279856000 uberon owl:Class endolymphatic UBERON:0011106 biolink:NamedThing cruciate ligament of atlas A cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below. monarch-merged.owl cruciform ligament of atlas|cruciform ligament of dens|cruciate ligament of dens|ligamentum cruciforme atlantis|triradiate ligament EMAPA:19010|FMA:25018|SCTID:182362005|Wikipedia:Cruciate_ligament_of_the_dens uberon owl:Class UBERON:0011130 biolink:NamedThing temporomandibular joint primordium monarch-merged.owl temporo-mandibular joint primordium EMAPA:18714 uberon owl:Class UBERON:0011137 biolink:NamedThing axial skeletal system Subdivision of the skeletal system which consists of the axial skeleton plus associated joints. monarch-merged.owl FMA:7483 uberon http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton owl:Class UBERON:0011138 biolink:NamedThing postcranial axial skeletal system Subdivision of the skeletal system which consists of the postcranial axial skeleton plus associated joints. monarch-merged.owl axial skeletal system|post-cranial axial skeletal system FMA:302077 uberon http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton owl:Class UBERON:0011142 biolink:NamedThing axial ossicle Ossicle that is part of the axial skeleton. monarch-merged.owl ossicle of axial skeleton|vertebral ossicle|ossicle of postcranial-axial skeleton VSAO:0000133 Examples of axial ossicles include the ossified tendons adjacent to the neural spines of the vertebral column. uberon owl:Class UBERON:0011164 biolink:NamedThing neurocranium bone A bone that is part of a neurocranium [Automatically generated definition]. monarch-merged.owl chondrocranium bone MA:0001478|SCTID:120229002|EMAPA:35238 uberon owl:Class UBERON:0011204 biolink:NamedThing rectovesical pouch Between the rectum and the bladder the peritoneal cavity forms, in the male, a pouch, the rectovesical excavation (or rectovesical pouch), the bottom of which is slightly below the level of the upper ends of the vesiculae seminalesbi. e. , about 7.5 cm. from the orifice of the anus. its lowest part membranous partition called Rectoprostatic fascia. The corresponding structure in women is the rectouterine pouch. monarch-merged.owl rectovesical|excavatio rectovesicalis|retrovesical excavation|rectovesical excavation|rectovesical space|recto-vesical pouch|rectovesical pouch UMLS:C0230301|FMA:14727|SCTID:261416006|NCIT:C33448|Wikipedia:Recto-vesical_pouch http://upload.wikimedia.org/wikipedia/commons/4/45/Gray1228.png uberon owl:Class UBERON:0011215 biolink:NamedThing central nervous system cell part cluster A multi cell part structure that is part of a central nervous system. monarch-merged.owl neuraxis layer|cell part cluster of neuraxis FMA:83143 uberon owl:Class UBERON:0011241 biolink:NamedThing ethmoid region The most anterior region of the braincase. Provides structural support for peripheral olfactory organ. monarch-merged.owl AAO:0000986 currently this is not restricted to skeletal elements, unlike UBERONREF:0000007 uberon owl:Class UBERON:0011263 biolink:NamedThing femoral gland A gland arranged along a row on the underside of the hindlimb in some lizards[Kardong]. monarch-merged.owl uberon owl:Class UBERON:0011264 biolink:NamedThing femoral pore Femoral pores are a part of a holocrine secretory gland found on the inside of the thighs of certain lizards and amphisbaenians which releases pheromones to attract mates or mark territory. In certain species only the male has these pores and in other species, both sexes have them, with the males being larger.[1] Femoral pores appear as a series of pits or holes within a row of scales on the ventral portion of the animal's thigh. monarch-merged.owl Wikipedia:Femoral_pore uberon owl:Class Femoral pores are present in all genera in the families Cordylidae, Crotaphytidae, Hoplocercidae, Iguanidae, Phrynosomatidae, and Xantusiidae. They are absent in all genera in the Anguidae, Chamaeleonidae, Dibamidae, Helodermatidae, Scincidae, Xenosauridae, and Varanidae families.[1] They are present in other lizards and amphisbaenians quite variably, some geckoes, Phelsuma, for example have these pores, others in the same family do not UBERON:0011268 biolink:NamedThing sublingua A secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands. monarch-merged.owl under-tongue|second tongue Wikipedia:Sublingua uberon owl:Class UBERON:0011272 biolink:NamedThing embryonic skin basal layer monarch-merged.owl outer epithelium of body|basal cell layer of skin EHDAA2:0001845 compare with 'stratum basale of epidermis'. This class is the source for many adult structures - see WP2062. See also: 'enveloping layer of ectoderm' uberon owl:Class UBERON:0011288 biolink:NamedThing stomochord A flexible, unpaired, hollow tube found in hemichordates that arises in embryonic development as an outpocketing from the roof of the embryonic gut anterior to the pharynx. In adults, they extend dorsally from the pharynx into the probiscis, and serve to communicate with the oral cavity. monarch-merged.owl stomatochord Wikipedia:Stomochord uberon owl:Class Their walls are composed primarily of epithelial cells, but ciliated and glandular cells are also present. UBERON:0011342 biolink:NamedThing surface of mandible A anatomical surface that is part of a mandible.|An anatomical surface that is part of a mandible. monarch-merged.owl mandibular surface FMA:57558 uberon owl:Class UBERON:0011345 biolink:NamedThing pharyngeal raphe The Pharyngeal raphe is a raphe that serves as the origin and insertion for several of the pharyngeal constrictors. monarch-merged.owl raphe pharyngis SCTID:179763009|Wikipedia:Pharyngeal_raphe|FMA:55077 uberon owl:Class isa anatomical line in FMA UBERON:0011360 biolink:NamedThing ampulla caudalis A ventricle-like space at the end of the central canal. monarch-merged.owl uberon owl:Class UBERON:0011510 biolink:NamedThing cloacal bursa An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration. monarch-merged.owl Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904] https://upload.wikimedia.org/wikipedia/commons/d/d8/Turtle_Cloacal_Respiration.png uberon owl:Class UBERON:0011566 biolink:NamedThing lumen of esophagus An anatomical cavity that is part of a esophagus. monarch-merged.owl eosophagus lumen|cavity of esophagus|eosophageal lumen|cavity of eosophagus|eosophageal cavity|esophagus lumen|esophageal cavity|esophageal lumen FMA:9398|SCTID:322648002|EMAPA:18380 uberon owl:Class UBERON:0011574 biolink:NamedThing mesonephric duct lumen A tube lumen that is part of a mesonephric duct. monarch-merged.owl nephric duct lumen|cavity of nephric duct EHDAA2:0001244 uberon owl:Class UBERON:0011580 biolink:NamedThing platypus crural gland A kidney-shaped alveolar glands located in the upper thigh connected by a thin-walled duct to a calcaneus spur, or calcar, on each hind limb. monarch-merged.owl Wikipedia:Platypus_venom#Spur_and_crural_gland uberon owl:Class UBERON:0011596 biolink:NamedThing future lower lip monarch-merged.owl lower jaw future lip EHDAA2:0001020 uberon owl:Class UBERON:0011604 biolink:NamedThing carina of sternum An extension of the sternum (breastbone) which runs axially along the midline of the sternum and extends outward, perpendicular to the plane of the ribs[WP]. monarch-merged.owl keel|avian keel|carina Wikipedia:Keel_(bird) http://upload.wikimedia.org/wikipedia/commons/6/69/Br%C3%A9chet.png uberon owl:Class UBERON:0011640 biolink:NamedThing palatoglossal arch A fold that lies between the mouth and pharynx and marks the posterior border of the mouth. monarch-merged.owl glossopalatine arch|arcus palatoglossus|arcus glossopalatinus|anterior pillar of fauces|plica anterior faucium Wikipedia:Palatoglossal_arch|FMA:55024|SCTID:276958001 uberon owl:Class UBERON:0011757 biolink:NamedThing differentiated genital tubercle . monarch-merged.owl primordial phallus|phallus|phallus primordialis UMLS:C1514448|NCIT:C34274|Wikipedia:Primordial_phallus uberon owl:Class UBERON:0011769 biolink:NamedThing cartilaginous projection Anatomical projection that is composed of cartilage tissue. monarch-merged.owl cartilaginous process|cartilage process FMA:284626 uberon owl:Class UBERON:0011772 biolink:NamedThing lower jaw opening An anatomical space that is part of a bone of lower jaw. monarch-merged.owl AAO:0000273 uberon owl:Class UBERON:0011773 biolink:NamedThing upper jaw opening An anatomical space that is part of a bone of upper jaw. monarch-merged.owl AAO:0000621 uberon owl:Class UBERON:0011799 biolink:NamedThing cavity of feather shaft An anatomical cavity that is part of a feather shaft. monarch-merged.owl uberon owl:Class UBERON:0011802 biolink:NamedThing feather bud . monarch-merged.owl elongate feather bud|feather papilla uberon owl:Class UBERON:0011805 biolink:NamedThing cavity of feather follicle . monarch-merged.owl uberon owl:Class UBERON:0011810 biolink:NamedThing collection of feathers An anatomical cluster that consists of feathers. monarch-merged.owl feather coat|plumage uberon owl:Class UBERON:0011819 biolink:NamedThing lumen of atrioventricular canal A tube lumen that is part of a atrioventricular canal. monarch-merged.owl cavity of atrioventricular canal|AVC lumen|lumen of AVC EHDAA2:0000152 uberon owl:Class UBERON:0011850 biolink:NamedThing acinus of salivary gland An acinus that is part of a salivary gland. monarch-merged.owl salivary gland acinus FMA:59870 uberon owl:Class UBERON:0011876 biolink:NamedThing body of tongue The oral part of the tongue anterior to the terminal sulcus. monarch-merged.owl corpus linguae|tongue body FMA:54641|SCTID:362090005 uberon owl:Class UBERON:0011877 biolink:NamedThing margin of tongue The lateral border that separates the dorsum from the inferior surface of the tongue on each side, the two borders meeting anteriorly at the apex.. monarch-merged.owl tongue margin|margo linguae SCTID:368572007|SCTID:368594004|FMA:54650 uberon owl:Class UBERON:0011892 biolink:NamedThing anterior uvea Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris. monarch-merged.owl anterior uveal tract|ventral uveal tract|anterior vascular tunic of the eye|ciliary body and iris|anterior vascular layer of the eyeball|Haller tunica vascula|vasculosa oculi|tunica vasculosa bulbosa|anterior part of uveal tract SCTID:280656002|EMAPA:37417 uberon owl:Class UBERON:0011893 biolink:NamedThing endoneurial fluid Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord. monarch-merged.owl EMAPA:37850 uberon owl:Class UBERON:0011894 biolink:NamedThing lumen of vagina An organ cavity that is part of a vagina.|A organ cavity that is part of a vagina. monarch-merged.owl vaginal lumen FMA:19982 uberon owl:Class UBERON:0011904 biolink:NamedThing gastrolith A rock held inside a gastrointestinal tract. monarch-merged.owl stomach stone|gizzard stone Wikipedia:Gastrolith uberon owl:Class UBERON:0011907 biolink:NamedThing gastrocnemius medialis . monarch-merged.owl medial head of gastrocnemius muscle|caput mediale musculus gastrocnemii|caput mediale (musculus gastrocnemius)|medial head of gastrocnemius EMAPA:36250|SCTID:213689008|FMA:45956 Mammalian gastrocnemius medialis and flexor hallucis longus arise from reptilian gastrocnemius internus[Kardong] uberon owl:Class UBERON:0011908 biolink:NamedThing gastrocnemius lateralis . monarch-merged.owl caput laterale (musculus gastrocnemius)|lateral head of gastrocnemius|caput laterale musculus gastrocnemii|lateral head of gastrocnemius muscle SCTID:213588009|FMA:45959|EMAPA:36249 Mammalian gastrocnemius lateralis, soleus and plantaris arise from reptilian gastrocnemius externus[Kardong] uberon owl:Class UBERON:0011918 biolink:NamedThing line of Schwalbe The thickened peripheral margin of the vitreous membrane of the cornea. monarch-merged.owl Schwalbe's ring|Schwalbe line|Schwalbe's line EMAPA:37895|FMA:58422 uberon owl:Class A line in FMA, a structure in MP UBERON:0011947 biolink:NamedThing ureter luminal urothelium A luminal layer of epithelium that is part of a ureter. monarch-merged.owl EMAPA:37779|MA:0002656 uberon owl:Class UBERON:0011948 biolink:NamedThing ureter subluminal urothelium monarch-merged.owl MA:0002657|EMAPA:37780 uberon owl:Class UBERON:0011949 biolink:NamedThing endometrium luminal epithelium A luminal layer of epithelium that is part of a endometrium epithelium. monarch-merged.owl MA:0002733|EMAPA:35309 uberon owl:Class UBERON:0011950 biolink:NamedThing mammary gland luminal epithelium The inner cell layer of the mammary epithelium bilayer that lines the luminal surface of mammary gland ducts and alveoli; luminal cells have only limited contact with the underlying basement membrane and surrounding connective tissue; they are secretory epithelial cells characterized by the expression of the receptors for systemic hormones, i.e. estrogens, progesterone and prolactin. monarch-merged.owl lumina layer of epithelium of lactiferous gland EMAPA:37902|FMA:74458 uberon owl:Class UBERON:0011951 biolink:NamedThing prostate luminal epithelium A luminal layer of epithelium that is part of a prostate gland. monarch-merged.owl subdivision of luminal layer of epithelium of prostatic gland FMA:74262 uberon owl:Class UBERON:0012054 biolink:NamedThing myocoele The cavity within a myotome.|The cavity within a myotome monarch-merged.owl VHOG:0001283|EMAPA:31134 uberon owl:Class The central cavity within the mesoderm is the paired primary or embryonic coelom. Parts of the embryonic coelom often become enclosed in the mesoderm, forming a myocoel within the epimere, a nephrocoel within the mesomere, and simple coelom (body cavity) within the lateral plate mesoderm.[well established][VHOG] UBERON:0012082 biolink:NamedThing bronchial lumen An anatomical cavity that is part of a bronchus. monarch-merged.owl bronchial lumen|lumen of bronchus FMA:62646|SCTID:199401001 uberon owl:Class UBERON:0012105 biolink:NamedThing baleen plate A keratinous sieve composed of bristles that enables filter feeding in the mouth of mysticete whales. monarch-merged.owl Wikipedia:baleen uberon owl:Class UBERON:0012106 biolink:NamedThing baleen plate bristle A keratinous bristle that enables filter feeding in the mouth of mysticete whales. monarch-merged.owl fringe of baleen plate|baleen plate fringe Wikipedia:baleen uberon owl:Class UBERON:0012111 biolink:NamedThing diastema A space or gap between two consecutive teeth. monarch-merged.owl diastemata|interdental space FMA:77271|SCTID:410003009|MESH:A14.254.333|Wikipedia:Diastema_(dentistry) UBERON:0013134 uberon owl:Class Many species of mammals have diastemata as a normal feature, most commonly between the incisors and molars UBERON:0012125 biolink:NamedThing dermatological-muscosal system Anatomical system that consists of the integumental system plus all mucosae and submucosae. monarch-merged.owl dermatological system uberon owl:Class UBERON:0012128 biolink:NamedThing nose tip Outermost point on an external nose or snout. monarch-merged.owl pirula|apex nasi|nasal tip|apex of nose|snout tip|tip of snout|tip of nose FMA:59518|SCTID:361926005|EMAPA:37915 uberon owl:Class UBERON:0012172 biolink:NamedThing stomach primordium A primordium that has the potential to develop into a stomach. monarch-merged.owl stomach endoderm EFO:0002580|NCIT:C34305|UMLS:C1514976 uberon owl:Class UBERON:0012198 biolink:NamedThing intercostal space A space in the rib cage between two successive ribs. monarch-merged.owl Wikipedia:Intercostal_space|SCTID:243937005|FMA:12243 uberon owl:Class UBERON:0012239 biolink:NamedThing urinary bladder vasculature network of tubes that carries blood through the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys[MP]|Network of tubes that carries blood through the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys[MP]. monarch-merged.owl blood vessels of bladder|set of urinary bladder blood vessels|blood vessel of bladder|bladder vasculature EMAPA:28679 uberon owl:Class UBERON:0012246 biolink:NamedThing thyroid follicular lumen A follicular lumen is the closed cavity within a follicle of the thyroid gland. It is surrounded by follicular cells and filled with colloid, a concentrated solution of thyroglobulin|A follicular lumen is the closed cavity within a follicle of the thyroid gland. It is surrounded by follicular cells and filled with colloid, a concentrated solution of thyroglobulin. monarch-merged.owl thyroid follicular space|follicular lumen|lumen of thyroid follicle|thyroid follicle lumen FMA:68829|Wikipedia:Follicular_lumen uberon owl:Class UBERON:0012249 biolink:NamedThing ectocervix The part of the cervix uteri that protrudes into the vagina and is lined with stratified squamous epithelium. monarch-merged.owl exocervix|ectocervix|portio vaginalis|vaginal part of cervix|uterine ectocervix|portio vaginalis cervicis UMLS:C0227829|NCIT:C12310|FMA:77056|FMA:86484|BTO:0001850|CALOHA:TS-1098|Wikipedia:Vaginal_portion_of_cervix|SCTID:264459002 UBERON:0010182 uberon owl:Class distinction between two FMA classes not clear - we merge them here UBERON:0012270 biolink:NamedThing forestomach-glandular stomach junction The distinct low fold of tissue that separates the non-glandular area of the stomach (forestomach) from the glandular stomach; the limiting ridge extends circumferentially from the large curvature of the stomach to the small curvature, just below the esophagus; at the esophagus, the course of the limiting ridge bends into a U-shape and almost surrounds the esophageal opening. monarch-merged.owl forestomach - glandular stomach squamocolumnar junction|margo plicatus|limiting ridge of stomach|squamocolumnar junction with the glandular stomach|squamo-columnar junction between forestomach and glandular stomach SCTID:67204008|MA:0003014|EMAPA:37640 uberon owl:Class UBERON:0012293 biolink:NamedThing anal fold A slight elevation flanking the cloacal membrane and derived from a cloacal fold; anal folds form the border of the anus. monarch-merged.owl EHDAA2:0004012|EMAPA:37392 uberon owl:Class UBERON:0012300 biolink:NamedThing limb paddle A transient developing limb structure that develops from the limb bud; it is a dorsoventral flattening of the limb bud structure and develops into the foot plate. monarch-merged.owl uberon owl:Class UBERON:0012334 biolink:NamedThing navicular bursa A fluid-filled sac that lies between the navicular bone and the deep digital flexor muscle. monarch-merged.owl bursa podotrochlearis SCTID:370660009 uberon owl:Class UBERON:0012337 biolink:NamedThing cauda equina The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space. monarch-merged.owl filum terminale http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1626|SCTID:263377004|FMA:52590|EMAPA:37468|MESH:D002420|NCIT:C12689|MA:0003045|Wikipedia:Cauda_equina|UMLS:C0007458 uberon owl:Class UBERON:0012351 biolink:NamedThing urachal lumen A anatomical space that is enclosed by a urachus.|An anatomical space that is enclosed by a urachus. monarch-merged.owl urachus lumen uberon owl:Class UBERON:0012352 biolink:NamedThing mesangial matrix Extracellular matrix secreted by intraglomerular mesangial cells. monarch-merged.owl extracellular mesangial matrix EMAPA:37907 uberon owl:Class UBERON:0012364 biolink:NamedThing colloid of thyroid follicle Portion of substance contained within the thyroid follicle lumen. Contains prohormone thyroglobulin. monarch-merged.owl thyroid follicle colloid|thyroid colloid FMA:68831 uberon owl:Class UBERON:0012375 biolink:NamedThing subserosa A layer of tissue between the muscularis and serosa. monarch-merged.owl NCIT:C94494|SCTID:2255006|UMLS:C0225334|Wikipedia:Subserosa|FMA:45636 Contains nerves, blood vessels, lymphatics and lymph nodes uberon owl:Class UBERON:0012376 biolink:NamedThing retromolar triangle The small area behind the wisdom teeth. monarch-merged.owl retromolar trigone|retromolar pad FMA:75784|CALOHA:TS-2353|UMLS:C0226920|NCIT:C54223|SCTID:245830008 requires verification uberon owl:Class UBERON:0012420 biolink:NamedThing coprodeum Most proximal cloacal compartment, into which the large intestine empties[Kardong]. monarch-merged.owl cloacal coprodeum|coprodeal portion of cloaca|coprodaeum uberon owl:Class coprodeal UBERON:0012421 biolink:NamedThing urodeum Cloacal compartment into which the urogenital system empties[Kardong]. monarch-merged.owl cloacal urodeum|urodaeum|urodeal portion of cloaca SCTID:81191004 uberon owl:Class urodeal This is where the urates collect. In the hen the oviduct opens into this compartment. UBERON:0012425 biolink:NamedThing striated border microvillus layer A microvillus layer that is striated and found in the intestine. monarch-merged.owl striated border FMA:70978|NCIT:C33634 uberon owl:Class FMA class represents an individual microvillus UBERON:0012427 biolink:NamedThing intestinal brush border layer A brush border layer that is part of a intestine. monarch-merged.owl intestinal brush border|brush border microvillus layer of intestine Consider merging into UBERON:0012425 uberon owl:Class UBERON:0012428 biolink:NamedThing proximal convoluted tubule brush border A brush border layer that is part of a proximal tubule in the kidney. monarch-merged.owl proximal tubule brush border layer|kidney brush border layer uberon owl:Class the microvilli in this layer can act as mechanosensors. They sense the fluid flow in the tubule lumen and convert this information via biochemical responses into reabsorption UBERON:0012438 biolink:NamedThing blastema of regenerating fin/limb A blastema that is part of a regenerating fin/limb. monarch-merged.owl ZFA:0001270 uberon owl:Class UBERON:0012439 biolink:NamedThing blastema of regenerating digit tip A blastema that is part of a distal segment of digit. monarch-merged.owl digit blastema uberon owl:Class UBERON:0012442 biolink:NamedThing epiploic foramen The passage of communication, or foramen, between the general cavity (of the abdomen), and the omental bursa. monarch-merged.owl epiploic foramen of Winslow|epiploic foramen|foramen of Winslow|foramen omentale|foramen epiploicum|foramen of winslow|aditus to lesser sac|foramen omentale (epiploicum)|omental foramen Wikipedia:Omental_foramen|FMA:14711|SCTID:264473006|EHDAA2:0000447 uberon owl:Class UBERON:0012443 biolink:NamedThing row of scales monarch-merged.owl set of scales uberon owl:Class UBERON:0012453 biolink:NamedThing nerve ending Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS. monarch-merged.owl nerve ending MESH:D009411 this class and subclasses may be ceded to GO uberon owl:Class UBERON:0012462 biolink:NamedThing proctodeum portion of cloaca Most distal cloacal compartment; function is copulation and in some species develops a penis[Kardong]. monarch-merged.owl proctodeal wall of cloaca|proctodeum SCTID:298233001 uberon owl:Class proctodeal For most birds this is where the phallus is located, but male parrots do not have a phallus. The Bursa of Fabricius is located here. UBERON:0012463 biolink:NamedThing cloacal lumen A anatomical space that is enclosed by a cloaca.|An anatomical space that is enclosed by a cloaca. monarch-merged.owl cloaca lumen|cloacal chamber TAO:0000330|ZFA:0000330 uberon owl:Class the ZFA class belongs here as it is an anatomical space. See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/102/ UBERON:0012464 biolink:NamedThing cloacal vent The opening of the cloacal chamber to the outside of the organism. Birds maintain a single cloacal opening throughout their lives. monarch-merged.owl vent|cloacal orifice|cloacal opening uberon owl:Class UBERON:0012465 biolink:NamedThing lumen of terminal part of digestive tract An anatomical space that is enclosed by a terminal part of digestive tract.|A anatomical space that is enclosed by a terminal part of digestive tract. monarch-merged.owl uberon owl:Class includes the cloacal lumen, in species where this is present UBERON:0012466 biolink:NamedThing extraembryonic cavity monarch-merged.owl extraembryonic cavities EHDAA2:0000472|VHOG:0000767|EMAPA:16054 uberon owl:Class UBERON:0012480 biolink:NamedThing cloacal mucosa A mucosa that is part of a cloaca [Automatically generated definition]. monarch-merged.owl mucous membrane of cloaca|mucosa of cloaca|cloacal mucous membrane|mucosa of organ of cloaca|cloaca mucosa|cloaca organ mucosa|cloaca mucosa of organ|cloaca mucous membrane|organ mucosa of cloaca UBERON:0003349 uberon owl:Class UBERON:0012485 biolink:NamedThing cloacal villus monarch-merged.owl cloacal villi uberon owl:Class UBERON:0012504 biolink:NamedThing adventitia of esophagus An adventitia that is part of a esophagus.|A adventitia that is part of a esophagus. monarch-merged.owl tunica adventitia oesophageae|tunica adventitia (esophagus)|esophageal adventitia|adventitious layer of esophagus|esophagus adventitia|adventitia of oesophagus SCTID:85950006|FMA:63006 uberon owl:Class UBERON:0012650 biolink:NamedThing gastroduodenal junction A anatomical junction that connects a stomach and connects a duodenum.|An anatomical junction that connects a stomach and connects a duodenum. monarch-merged.owl FMA:17046|SCTID:264014000 uberon owl:Class UBERON:0013073 biolink:NamedThing rattle . monarch-merged.owl snake rattle SCTID:10734004|Wikipedia:Rattlesnake#Rattle The rattle is composed of a series of hollow, interlocked segments made of keratin, which are created by modifying the scales that cover the tip of the tail. uberon owl:Class UBERON:0013118 biolink:NamedThing sulcus of brain A depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals. monarch-merged.owl fissure of brain|sulci & spaces|cerebral sulci|sulcus|cerebral sulcus SCTID:279337001|DHBA:10610|NCIT:C32292|Wikipedia:Sulcus_(neuroanatomy)|HBA:9352|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1208 sulci are considered absent from lissencephalic mammals such as mice, but they may possess fissures. For example, the Allen mouse brain Atlas includes hippocampal, rhinal and choroid fissure. For this reason we do not place a taxon constraint on this class uberon owl:Class Indentation on the surface of the brain or spinal cord that forms a recognizable landmark, e.g., central sulcus, sulcus limitans (CUMBO) UBERON:0013131 biolink:NamedThing lobe of tail monarch-merged.owl fluke|tail fluke uberon owl:Class UBERON:0013141 biolink:NamedThing capillary bed A localized group of blood capillaries. monarch-merged.owl microcirculatory bed UMLS:C1513268|AEO:0001002|EMAPA:36291|FMA:45632|NCIT:C33109 uberon owl:Class UBERON:0013150 biolink:NamedThing future brain vesicle monarch-merged.owl brain vesicle|primary brain vesicle|primitive brain vesicle|early brain vesicle|secondary brain vesicle SCTID:360409004|NCIT:C34259|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2499 consider adding all secondary vesicles (e.g. diencephalic; my/metencephalic. See http://www.dartmouth.edu/~rswenson/NeuroSci/chapter_4.html). uberon owl:Class Note that some sources may treat the term vesicle as the progenitor of the whole brain region; for example 'The retina develops directly from the neural tube as an outpouching from the diencephalic vesicle' UBERON:0013182 biolink:NamedThing core of melon organ The core component of the ovoid-shaped, fatty organ found in the forehead of all toothed whales. monarch-merged.owl melon core uberon owl:Class UBERON:0013191 biolink:NamedThing ovarian cortex the layer of the ovarian stroma lying immediately beneath the tunica albuginea, composed of connective tissue cells and fibers, among which are scattered primary and secondary (antral) follicles in various stages of development; the cortex varies in thickness according to the age of the individual, becoming thinner with advancing years; included in the follicles are the cumulus oophorus, membrana granulosa (and the granulosa cells inside it), corona radiata, zona pellucida, and primary oocyte; the zona pellucida, theca of follicle, antrum and liquor folliculi are also contained in the follicle; also in the cortex is the corpus luteum derived from the follicles.|The layer of the ovarian stroma lying immediately beneath the tunica albuginea, composed of connective tissue cells and fibers, among which are scattered primary and secondary (antral) follicles in various stages of development; the cortex varies in thickness according to the age of the individual, becoming thinner with advancing years; included in the follicles are the cumulus oophorus, membrana granulosa (and the granulosa cells inside it), corona radiata, zona pellucida, and primary oocyte; the zona pellucida, theca of follicle, antrum and liquor folliculi are also contained in the follicle; also in the cortex is the corpus luteum derived from the follicles. monarch-merged.owl cortex ovarii (zona parenchymatosa)|cortex of ovary UMLS:C0227878|EMAPA:37927|NCIT:C33243|FMA:18613 uberon owl:Class UBERON:0013192 biolink:NamedThing ovarian medulla highly vascular stroma found in the center of the ovary that forms from embryonic mesenchyme and contains blood vessels, lymphatic vessels, and nerves; this stroma forms the tissue of the hilum by which the ovarian ligament is attached, and through which the blood vessels enter; it does not contain any ovarian follicles.|Highly vascular stroma found in the center of the ovary that forms from embryonic mesenchyme and contains blood vessels, lymphatic vessels, and nerves; this stroma forms the tissue of the hilum by which the ovarian ligament is attached, and through which the blood vessels enter; it does not contain any ovarian follicles. monarch-merged.owl medulla of ovary|zona vasculosa of Waldeyer|medulla ovarii (zona vasculosa) NCIT:C33245|UMLS:C0227879|Wikipedia:Medulla_of_ovary|EMAPA:37928|FMA:18616 uberon owl:Class composed of loose connective tissue that contains blood vessels, lymph vessels and nerves UBERON:0013216 biolink:NamedThing udder A large pendulous organ consisting of two or more mammary glands enclosed in a common envelope and each provided with a single nipple. monarch-merged.owl Wikipedia:Udder|SCTID:27528008 uberon owl:Class An udder is an organ formed of the mammary glands of female quadruped mammals, especially ruminants such as cattle, goats, sheep and deer. The udder is a single mass hanging beneath the animal, consisting of pairs of mammary glands. In cattle there are normally two pairs, in sheep, goats and deer there is one pair, and in some animals such as pigs there are many pairs. Udder care and hygiene in cows is important in milking, aiding uninterrupted and untainted milk production, and preventing mastitis. Products exist to soothe the chapped skin of the udder. This helps prevent bacterial infection, and reduces irritation during milking by the cups, and so the cow is less likely to kick the cups off[Wikipedia:Udder]. UBERON:0013220 biolink:NamedThing foramen of Panizza A hole with that connects the left and right aorta in animals of the order Crocodilia. monarch-merged.owl Wikipedia:Foramen_of_Panizza uberon owl:Class Crocodilians have a completely separated ventricle with deoxygenated blood from the body, or systemic circulation, in the right ventricle and oxygenated blood from the lungs, or pulmonary circulation, in the left ventricle, as in birds and mammals. Two vessels, the left aorta and the pulmonary artery, exit the right ventricle. Blood from the right ventricle goes to the lungs through the pulmonary artery, as in mammals and birds. However, when a unique active valve leading to the pulmonary artery contracts, pressure in the right ventricle can increase and blood can leave the right ventricle, enter the left aortic arch, and therefore bypass the pulmonary circulation. The foramen of panizza connects the left and right aorta. Deoxygenated blood from the right ventricle, sitting in the left aorta, can flow into the right aorta through the foramen of panizza. When the heart is relaxed, some oxygenated blood from the left ventricle, sitting in the right aorta, can flow into the left aorta across the foramen of panizza. However, some species of Crocodilians have regulatory sphincters that prevent unwanted flow of blood through the foramen of panizza during non-diving UBERON:0013234 biolink:NamedThing violet gland The violet gland or supracaudal gland is an important gland located on the upper surface of the tail of certain mammals, including European badgers and canids such as foxes, wolves the domestic dog, as well as the domestic cat. It is used for intra species signalling, scent marking, and contributes to the strong odor of foxes in particular. monarch-merged.owl supracaudal gland Wikipedia:Violet_gland uberon owl:Class UBERON:0013238 biolink:NamedThing future glans monarch-merged.owl uberon owl:Class UBERON:0013241 biolink:NamedThing embryonic urethral groove The precursor of the urethra|The precursor of the urethra. monarch-merged.owl urethral groove|sulcus urethralis primarius|urethral sulcus SCTID:361531004|Wikipedia:Urethral_groove uberon owl:Class In humans, the urethral groove is a temporary linear indentation on the underside (ventral side) of the male penis during embryonic development. It typically appears around 8 weeks of gestation and becomes closed into a normal male urethra by the 12th week UBERON:0013244 biolink:NamedThing vaginal plate The vaginal plate is a precursor to the inferior portion of the vagina. They form from sinovaginal bulbs. monarch-merged.owl UMLS:C1519928|NCIT:C34325|Wikipedia:Vaginal_plate uberon owl:Class UBERON:0013245 biolink:NamedThing sinovaginal bulb Solid evaginations of the UG sinus that develops into a vaginal plate that which will will eventually canalize to form the inferior portion of the vagina. monarch-merged.owl UMLS:C1519330|NCIT:C34297 uberon owl:Class UBERON:0013468 biolink:NamedThing zygomatic fossa The Zygomatic Fossa is an irregularly shaped cavity, situated below and on the inner side of the zygoma; bounded, in front, by the zygomatic surface of the superior maxillary bone and the ridge which descends from its malar process; behind, by the posterior border of the external pterygoid plate and the eminentia articularis; above, by the pterygoid ridge on the outer surface of the great wing of the sphenoid and the under part of the squamous portion of the temporal; below by the alveolar border of the superior maxilla; internally, by the external pterygoid plate; and externally, by the zygomatic arch ramus of the lower jaw. It contains the lower part of the temporal, the External and Internal pterygoid muscles, the internal maxillary artery and vein, and inferior maxillary nerve and their branches. At its upper and inner part may be observed two fissures, the spheno-maxillary and pterygo-maxillary. monarch-merged.owl Wikipedia:Zygomatic_fossa|NCIT:C33898 uberon owl:Class UBERON:0013471 biolink:NamedThing retromolar space The retromolar space or retromolar gap is a space at the rear of a mandible, between the back of the last molar and the anterior edge of the ascending ramus where it crosses the alveolar margin.[WP]. monarch-merged.owl retromolar gap Wikipedia:Retromolar_space uberon owl:Class Retromolar gap is found in some Neandertals because they had midfacial prognathism. This caused the lower toothrow to move forward, which led to the retromolar gap.. UBERON:0013476 biolink:NamedThing dermal layer of tongue . monarch-merged.owl tongue (dermal layer) uberon owl:Class UBERON:0013499 biolink:NamedThing glossopharyngeal-vagus IX-X preganglion complex monarch-merged.owl glossopharyngeal-vagus preganglion complex EMAPA:16662 uberon owl:Class UBERON:0013525 biolink:NamedThing stomach lumen The anatomical space that is enclosed by a stomach. monarch-merged.owl gastric cavity|cavity of stomach EMAPA:18395|FMA:14585 uberon owl:Class Organ cavity which is bound by the internal surface of the wall of stomach. Examples: There is only one cavity of stomach[FMA:14585]. UBERON:0013526 biolink:NamedThing otocyst lumen An anatomical cavity that is part of a ear vesicle.|A anatomical cavity that is part of a ear vesicle. monarch-merged.owl lumen of otocyst EHDAA2:0004121|EMAPA:25363 uberon owl:Class UBERON:0013527 biolink:NamedThing pectoral flipper tubercle A bump or swelling adorining the head and leading edge of a pectoral flipper, associated with the multiple joints and terminal phalanges as found in the multiple phalanges of the humpback whale. monarch-merged.owl uberon owl:Class In a humpback the number of tubercles ranges from 9 to 11, with the first at the joint between the radius and metacarpal of digit II (with digit I absent) UBERON:0013631 biolink:NamedThing sesamoid element Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation. monarch-merged.owl sesamoid VSAO:0000137 Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage. uberon owl:Class UBERON:0013633 biolink:NamedThing intertrochanteric crest The intertrochanteric crest is a bony ridge located on the posterior side of the head of the femur, stretching obliquely downward and medially from the summit of the greater trochanter to the lesser trochanter. monarch-merged.owl Wikipedia:Intertrochanteric_crest|FMA:75100 Together with the intertrochanteric line on the anterior side of the head, the crest mark the transition between of the neck of femur into the shaft of femur. An elevation between the middle and proximal third of the crest is known as the quadrate tubercle. The upper half of the crest forms the posterior border of the greater trochanter. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head uberon owl:Class UBERON:0013634 biolink:NamedThing intertrochanteric line The intertrochanteric line (or spiral line of the femur) is a line located on the anterior side of the proximal end of the femur that stretches between the lesser trochanter and the greater trochanter forming the base of the neck of the femur, roughly following the direction of the shaft of the femur. monarch-merged.owl FMA:74587|Wikipedia:Intertrochanteric_line uberon owl:Class UBERON:0013656 biolink:NamedThing dulla A diverticulum on the lingual aspect of the soft palate of male dromedaries which may be inflated with air and be extruded from the oral cavity during rut. monarch-merged.owl dulaa|dulah Wikipedia:Dulla_(organ) uberon owl:Class UBERON:0013657 biolink:NamedThing hump A fatty deposit found on the back of camels. monarch-merged.owl CamelHump|camel hump uberon owl:Class UBERON:0013672 biolink:NamedThing priapium A complex muscular and bony clasping and copulatory organ derived mainly from the pelvic fins, found under the head of male Phallostethoidea with the anus opening on one side and the genital pore on the other. The structure varies among family members. Hook-like ctenactia articulate basally with the aproctal axial which is movably articulated with the proctal axial bone itself, suspended anteriorly by the outer (and sometimes inner) pulvinular bone from the cleithrum and perhaps the urohyal. Other elements are the priapal ribs, the anteplural cartilage (supporting elements along with the cleithrum and the pulvinar), the toxactinium, the infrasulcar and the uncus (forming the claspers along with the ctenactinium), the penial, basipenial, papillary, prepapillary and cristate bones (forming the papillary unit). monarch-merged.owl priapia Contains ducts from kidney, gonads, terminal parts of intestine[ISBN:047175644X] uberon owl:Class UBERON:0013727 biolink:NamedThing notochordal fluid Fluid contained within the notochordal canal|Fluid contained within the notochordal canal. monarch-merged.owl portion of notochordal fluid|notochord fluid Distinct feature of coelocanths uberon owl:Class UBERON:0013758 biolink:NamedThing cervical os One of two openings in the uterine cervix. monarch-merged.owl cervical opening|uterine cervix opening FMA:20422 uberon owl:Class UBERON:0013761 biolink:NamedThing cervical cavity The cavity formed by the walls of the cervix. monarch-merged.owl canal of the cervix|endocervical canal|endocervix|cervical canal|cavity of cervix|endocervical|lumen of cervix of uterus|cervical canal of uterus Wikipedia:Canal_of_the_cervix|FMA:17746|BTO:0002249 uberon owl:Class UBERON:0013769 biolink:NamedThing uterine lumen A organ cavity that is part of a uterus.|An organ cavity that is part of a uterus. monarch-merged.owl cavity of uterus|uterine cavity|uterine space Wikipedia:Uterine_cavity|EMAPA:36273|FMA:17745 uberon owl:Class UBERON:0014283 biolink:NamedThing piriform cortex layer 3 Deepest of 3 cytoarchitecturally defined layers of the piriform cortex characterized by a moderately high density of pyramidal cells and large numbers of basal dendrites descending from pyramidal cells in layer 2. monarch-merged.owl layer 3 of piriform cortex|piriform cortex layer 3 NLXANAT:091009 Maryann Martone uberon owl:Class UBERON:0014445 biolink:NamedThing acetabular fossa The acetabular fossa is the roughened depression in the centre of the acetabulum, surrounded by the lunate acetabular surface and the acetabular notch. The acetabular fossa provides an insertion point for the teres ligaments that secure the femoral head. monarch-merged.owl fossa acetabularis|fossa acetabuli|fossa acetabularis (acetabuli) Wikipedia:Acetabular_fossa|SCTID:289666003|FMA:17269 It is occupied by the ligament of head of femur[WP] uberon owl:Class UBERON:0014466 biolink:NamedThing subarachnoid fissure monarch-merged.owl FMA:75136 uberon owl:Class UBERON:0014475 biolink:NamedThing endostylar duct A duct in ammocetes (larval lamprey) that is reputed to connect the endostylar lumen to the pharyngeal lumen. Resembles the thyroglossal duct. monarch-merged.owl duct of endostyle uberon owl:Class UBERON:0014477 biolink:NamedThing thoracic skeleton Subdivision of skeletal system that consists of all skeletal elements in the thoracic region of the trunk. In most vertebrates this is the rib cage and sternum. monarch-merged.owl thoracic part of axial skeleton|skeleton of thorax|thoracic skeleton FMA:77169|EHDAA2:0002013|Wikipedia:Thoracic_skeleton uberon owl:Class UBERON:0014478 biolink:NamedThing rib skeletal system Subdivision of skeletal system that consists of all ribs and rib joints in an organism. In many vertebrates this consists of the combination of the rib cage and all rib joints, but some vertebrates have ribs outside the thoracic rib cage. monarch-merged.owl rib skeleton|rib series|set of all ribs TAO:0002100|FMA:265719 uberon owl:Class UBERON:0014510 biolink:NamedThing lamina of omasum A muscular sheet of the omasum wall consisting of two lateral layers and an intermediate layer of smooth muscle covered with non-glandular stratified squamous epithelium. monarch-merged.owl omasal laminae|omasal lamina SCTID:24667000 uberon owl:Class UBERON:0014611 biolink:NamedThing apex of thoracic spinal cord dorsal horn monarch-merged.owl apex of thoracic spinal cord dorsal horn|apex of thoracic spinal cord posterior horn SCTID:367877009|UMLS:C0228629|BIRNLEX:1427 uberon owl:Class UBERON:0014622 biolink:NamedThing apex of cervical spinal cord dorsal horn monarch-merged.owl apex of cervical spinal cord dorsal horn|apex of cervical spinal cord posterior horn SCTID:174452008|UMLS:C0228612|BIRNLEX:1714 uberon owl:Class UBERON:0014632 biolink:NamedThing apex of lumbar spinal cord dorsal horn monarch-merged.owl apex of lumbar spinal cord dorsal horn|apex of lumbar spinal cord posterior horn BIRNLEX:811|UMLS:C0228647|SCTID:314425003 uberon owl:Class UBERON:0014701 biolink:NamedThing extraembryonic vascular system A vascular system that overlaps a umbilical cord and is part of a entire extraembryonic component. monarch-merged.owl EMAPA:16370|EHDAA2:0000478|VHOG:0001396 uberon owl:Class UBERON:0014704 biolink:NamedThing pleuroperitoneal canal lumen An anatomical space that is enclosed by a pleuroperitoneal canal.|A anatomical space that is enclosed by a pleuroperitoneal canal. monarch-merged.owl pleuro-peritoneal canal cavity EMAPA:25034|EHDAA2:0004736 uberon owl:Class UBERON:0014730 biolink:NamedThing osteon A circular structural unit of bone tissue. It consists of a central hole, the Haversian canal through which blood vessels run, surrounded by concentric rings, called lamellae. monarch-merged.owl haversian system|bone matrix|volkmann's vessel|haversian canal|haversian systems|osteonum MESH:D006253|Wikipedia:Osteon|NCIT:C32714|BTO:0004592|FMA:32693|SCTID:361726004 uberon owl:Class UBERON:0014731 biolink:NamedThing haversian canal Haversian canals are a series of tubes around narrow channels formed by lamellae. This is the region of bone called compact bone. Osteons are arranged in parallel to the long axis of the bone. The Haversian canals surround blood vessels and nerve cells throughout the bone and communicate with osteocytes in lacunae (spaces within the dense bone matrix that contain the living bone cells) through canaliculi. This unique arrangement is conducive to mineral salt deposits and storage which gives bone tissue its strength. monarch-merged.owl nutrient canal|haversian canals Wikipedia:Haversian_canal|SCTID:3336003|FMA:224787|NCIT:C32713 uberon owl:Class UBERON:0014781 biolink:NamedThing stomodeal ectoderm monarch-merged.owl BTO:0004224 uberon owl:Class UBERON:0014782 biolink:NamedThing allantois of embryonic urinary system monarch-merged.owl allantois EMAPA:28547|EHDAA2:0000113 remnant of allantois in embryo uberon owl:Class UBERON:0014790 biolink:NamedThing lingual septum The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ. monarch-merged.owl septum of tongue|median fibrous septum|tongue septum Wikipedia:Lingual_septum|FMA:54813|EMAPA:18274|SCTID:368727001 uberon owl:Class UBERON:0014801 biolink:NamedThing nuchal line attachment site Any of the four curved lines on the external surface of the occipital bone that serves as an attachment site for a muscle. monarch-merged.owl nuchal line Wikipedia:Nuchal_lines in FMA this is modeled as an immaterial entity uberon owl:Class UBERON:0014903 biolink:NamedThing primordial vasculature A portion of tissue that will develop into vasculature. monarch-merged.owl ZFA:0005076|TAO:0005076|EFO:0003708 uberon owl:Class UBERON:0014930 biolink:NamedThing perivascular space The space between a blood vessel and the pia mater. monarch-merged.owl VRS|perivascular spaces|Virchow-Robin space|perivascular region UMLS:C0225983|Wikipedia:Virchow-Robin_space|SCTID:342298001|NCIT:C83196 VRS belonging to the subarachnoid space are continuous with VRS of the subpial space. The direct communication between VRS of the subarachnoid space and the subpial space is unique to the brain's arteries, as no leptomeningeal layers surround the brain's veins[WP] https://static-content.springer.com/image/art%3A10.1007%2Fs11064-015-1581-6/MediaObjects/11064_2015_1581_Fig3_HTML.gif uberon owl:Class UBERON:0014950 biolink:NamedThing layer of developing cerebral cortex monarch-merged.owl these layers primarily refer to the mammalian future neocortex uberon owl:Class UBERON:0015015 biolink:NamedThing supraoccipital endochondral element A supraoccipital bone or its cartilage or pre-cartilage precursor. monarch-merged.owl supraoccipital skeletal element|supraoccipital element uberon owl:Class UBERON:0015019 biolink:NamedThing rib endochondral element A rib bone or its cartilage or pre-cartilage precursor. monarch-merged.owl rib element|rib skeletal element uberon owl:Class Humans have 24 ribs (12 pairs). The first seven sets of ribs, known as 'true ribs', are directly attached to the sternum through the costal cartilage. The following five sets are known as 'false ribs', three of these sharing a common cartilaginous connection to the sternum, while the last two (eleventh and twelfth ribs) are termed floating ribs (costae fluitantes) or vertebral ribs. They are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs of floating ribs, while others have a third pair. Rib removal is the surgical excision of ribs for therapeutic or cosmetic reasons. In fish, there are often two sets of ribs attached to the vertebral column. One set, the dorsal ribs, are found in the dividing septum between the upper and lower parts of the main muscle segments, projecting roughly sideways from the vertebral column. The second set, of ventral ribs arise from the vertebral column just below the dorsal ribs, and enclose the lower body, often joining at the tips. Not all species possess both types of rib, with the dorsal ribs being most commonly absent. Sharks, for example, have no dorsal ribs, and only very short ventral ribs, while lampreys have no ribs at all. In some teleosts, there may be additional rib-like bones within the muscle mass. Tetrapods, however, only ever have a single set of ribs which are probably homologous with the dorsal ribs of fishes. In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. The sacral ribs were stout and short, since they formed part of the pelvis, connecting the backbone to the hip bones.[1] In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis.[1]. In birds, ribs are present as distinct bones only on the thoracic region, although small fused ribs are present on the cervical vertebrae. The thoracic ribs of birds possess a wide projection to the rear; this uncinate process is an attachment for the shoulder muscles.[1]. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals. UBERON:0015048 biolink:NamedThing basioccipital endochondral element A basioccipital bone or its cartilage or pre-cartilage precursor. monarch-merged.owl basioccipital skeletal element|basioccipital element uberon owl:Class UBERON:0015051 biolink:NamedThing exoccipital endochondral element An exoccipital bone or its cartilage or pre-cartilage precursor. monarch-merged.owl exoccipital element|exoccipital skeletal element uberon owl:Class UBERON:0015059 biolink:NamedThing orbitosphenoid endochondral element A orbitosphenoid bone or its cartilage or pre-cartilage precursor.|An orbitosphenoid bone or its cartilage or pre-cartilage precursor. monarch-merged.owl orbitosphenoid element|orbitosphenoid skeletal element uberon owl:Class UBERON:0015155 biolink:NamedThing conjunctival space A anatomical space that is enclosed by a conjunctiva.|An anatomical space that is enclosed by a conjunctiva. monarch-merged.owl subconjunctival space|conjunctival sac cavity|cavity of conjunctival sac|subbrillar space SCTID:280957009|FMA:59083 uberon owl:Class UBERON:0015178 biolink:NamedThing somite border A region of somite adjacent to presomitic mesoderm. monarch-merged.owl intersomitic fissure|segmental border|inter-somited border|somite boundary|intersomitic boundary|intersomitic junction ZFA:0001462|XAO:0004074|TAO:0001462 uberon owl:Class UBERON:0015179 biolink:NamedThing somite boundary epithelium Epithelium located in the intersomitic region. monarch-merged.owl intersomitic epithelium|intersomitic membrane XAO:0004077 uberon owl:Class UBERON:0015214 biolink:NamedThing arcuate ligament A ligament that is part of a diaphragm. monarch-merged.owl EMAPA:19236|FMA:58280 uberon owl:Class UBERON:0015216 biolink:NamedThing nasal meatus monarch-merged.owl SCTID:310212002|EMAPA:18593|FMA:53146 uberon owl:Class UBERON:0015238 biolink:NamedThing pineal complex A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals. monarch-merged.owl ZFA:0001359|TAO:0001359 uberon owl:Class UBERON:0015854 biolink:NamedThing interpedicular line An anatomical line that connects two successive vertebral pedicles. The length of this line is known as the interpedicular distance. monarch-merged.owl inter-vertebral-pedicle line|interpedicular distance uberon owl:Class UBERON:0015855 biolink:NamedThing ventral ectodermal ridge A thickening of the surface ectoderm on the ventral side of the embryonic tail which resembles the apical ectodermal ridge of the limb bud. monarch-merged.owl VER EMAPA:36491 uberon owl:Class A group of ectodermal cells that serves as an important signaling center in the mouse tail-bud following completion of gastrulation, and contains progenitor cells that contribute to the ventral midline ectoderm of the tail; ablation of the VER leads to defects in somitogenesis and tail elongation[MP] UBERON:0016458 biolink:NamedThing esophageal hiatus A hole in the diaphragm through which the esophagus passes.|A hole in the diaphragm through which the esophagus passes monarch-merged.owl oesophageal aperture|oesophageal hiatus|esophageal hiatus of diaphragm FMA:58289 uberon owl:Class UBERON:0016482 biolink:NamedThing dental plaque A soft, thin film of food debris, mucin, and dead epithelial cells deposited on the teeth, providing the medium for the growth of various bacteria. The main inorganic components are calcium and phosphorus, with small amounts of magnesium, potassium, and sodium; the organic matrix consists of polysaccharides, proteins, carbohydrates, lipids, and other components. Plaque plays an important etiologic role in the development of dental caries and periodontal and gingival diseases and provides the base for the development of materia alba; calcified plaque forms dental calculus. monarch-merged.owl bacterial plaque|plaque Wikipedia:Dental_plaque|BTO:0000338|MESH:A12.300.300 uberon owl:Class UBERON:0016491 biolink:NamedThing vertebral centrum element Skeletal element that functionally replaces the notochord[VSAP,modified]. monarch-merged.owl centrum of vertebra|centrum VSAO:0000183 uberon owl:Class Skeletal element that surrounds the notochord.[VSAO]|the main cylindrical portion of the vertebra ventral to the vertebral canal The vertebral centrum may be cartilaginous, develop as cartilage but be replaced by bone or mineralized, or form directly through intramembranous ossification. UBERON:0016502 biolink:NamedThing stomach fundus lumen A anatomical space that is enclosed by a fundus of stomach.|An anatomical space that is enclosed by a fundus of stomach. monarch-merged.owl cavity of fundus of stomach|lumen of stomach fundus|lumen of fundus of stomach FMA:17077|EMAPA:18382 uberon owl:Class UBERON:0016504 biolink:NamedThing umbilical ring A dense fibrous ring surrounding the umbilicus at birth. At about the sixth week of embryological development, the midgut herniates through the umbilical ring; four weeks later it returns to the abdominal cavity and rotates around the superior mesenteric artery. monarch-merged.owl EMAPA:31868|SCTID:368065003|FMA:19930|Wikipedia:Umbilical_ring uberon owl:Class UBERON:0016505 biolink:NamedThing Mullerian tubercle An elevation on the wall of the embryonic urogenital sinus where the Müllerian ducts enter. monarch-merged.owl mullerian tubercle|Müllerian tubercle|Muellerian tubercle EMAPA:18328|MA:0003239|FMA:72175 uberon owl:Class UBERON:0016512 biolink:NamedThing lumen of duodenum A anatomical space that is part of a duodenum.|An anatomical space that is part of a duodenum. monarch-merged.owl doudenal lumen|duodenal lumen EMAPA:19080|FMA:14589 uberon owl:Class UBERON:0016517 biolink:NamedThing lumen of jejunum An anatomical space that is part of a jejunum.|A anatomical space that is part of a jejunum. monarch-merged.owl jejunal lumen|jejunum lumen FMA:14590|EMAPA:18729 uberon owl:Class UBERON:0016611 biolink:NamedThing auditory hillocks, pharyngeal arch 1 derived A collection of protruberances derived from pharyngeal arch 1 that develop into the tragus, crus of the helix, and helix. monarch-merged.owl uberon owl:Class UBERON:0016612 biolink:NamedThing auditory hillocks, pharyngeal arch 2 derived A collection of protruberances derived from pharyngeal arch 2 that develop into the concha, antihelix and antitragus. monarch-merged.owl uberon owl:Class UBERON:0016628 biolink:NamedThing stem of Y-shaped fibrocartilage skeleton of ventral pouch monarch-merged.owl YSF stem uberon owl:Class UBERON:0016629 biolink:NamedThing branch of Y-shaped fibrocartilage skeleton of ventral pouch monarch-merged.owl YSF branch uberon owl:Class UBERON:0016630 biolink:NamedThing neurovascular bundle A body structure consisting of nerves traveling together with arteries, veins, and/or lymphatics. monarch-merged.owl NCIT:C74603|FMA:32419|UMLS:C0824497 uberon owl:Class UBERON:0016884 biolink:NamedThing shoulder joint The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints|The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints. monarch-merged.owl joint of shoulder region SCTID:361835002 uberon owl:Class UBERON:0016887 biolink:NamedThing entire extraembryonic component The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism. monarch-merged.owl extra-embryonic component|extraembryonic component EMAPA:16042|EHDAA2:0000003|AEO:0000195 uberon owl:Class UBERON:0017157 biolink:NamedThing exoccipital-atlas joint A synovial joint that connects a vertebral bone 1 and connects a exoccipital bone. monarch-merged.owl atlanto-exoccipital joint UBERONTEMP:372c02ad-f2bd-4cf8-b55c-9b686c3d62f4 uberon owl:Class UBERON:0017163 biolink:NamedThing skin bony tubercle A bony structure embedded in skin, roughly equivalent to osteoderms. monarch-merged.owl bony tubercle|bony tubercles http://purl.bioontology.org/ontology/provisional/bdc28b9d-8fe6-4175-ae67-002f61493279|http://purl.bioontology.org/ontology/provisional/3b77fb04-1e62-43af-a84b-5d5eb7388525 uberon owl:Class UBERON:0017626 biolink:NamedThing transverse folds of rectum Houston's valves (or transverse folds of rectum) are semi-lunar transverse folds of the rectal wall that protrude into the anal canal. Their use seems to be to support the weight of fecal matter, and prevent its urging toward the anus, which would produce a strong urge to defecate. Although the term rectum means straight, these transverse folds overlap each other during the empty state of the intestine to such an extent that, as Houston remarked, they require considerable maneuvering to conduct an instrument along the canal, as often occurs in sigmoidoscopy and colonoscopy. These folds are about 12 mm. in width and are composed of the circular muscle coat of the rectum. They are usually three in number; sometimes a fourth is found, and occasionally only two are present. One is situated near the commencement of the rectum, on the right side. A second extends inward from the left side of the tube, opposite the middle of the sacrum. A third, the largest and most constant, projects backward from the forepart of the rectum, opposite the fundus of the urinary bladder. When a fourth is present, it is situated nearly 2.5 cm above the anus on the left and posterior wall of the tube. monarch-merged.owl plicae transversae recti|Kohlrausch's fold (middle of three)|transverse folds of rectum|Houston's valves|Houston's valve (middle of three)|set of transverse folds of rectum|Houston's valve FMA:75657|Wikipedia:Houston_valve uberon owl:Class UBERON:0017627 biolink:NamedThing rectal valve A thin diaphragm located in the posterior fifth of the intestine of some Centrolophidae, e.g. Seriolella punctata, Schedophilus huttoni and Psenes pellucidus, or in others a sphincter-like constriction, e.g. Seriolella brama. A deep purple fluid was confined to the valve in S. punctata, but was found throughout the intestine in the other two species referred to. The fluid might be used to void a coloured cloud to distract or deter a predator. monarch-merged.owl uberon owl:Class UBERON:0017628 biolink:NamedThing swim bladder gas gland A structure with numerous blood vessels (retia mirabilia) in the gas bladder that secretes gases from the blood. monarch-merged.owl red gland of gas bladder|gas gland|red gland|fascis mirabilis uberon owl:Class UBERON:0017659 biolink:NamedThing ventral surface of penis monarch-merged.owl urethral surface of penis FMA:19624 uberon owl:Class UBERON:0018136 biolink:NamedThing maxillary fenestra A fenestra or hole which pierces the maxilla anterior to the antorbital fenestra. monarch-merged.owl uberon owl:Class UBERON:0018137 biolink:NamedThing premaxillary fenestra A fenestra that is part of a premaxilla. monarch-merged.owl uberon owl:Class UBERON:0018149 biolink:NamedThing angle of oral opening monarch-merged.owl mouth angle|angle of mouth MFMO:0000145|FMA:77269|SCTID:263940002 Serves as attachment site for zygomaticus major muscle uberon owl:Class UBERON:0018254 biolink:NamedThing skeletal musculature monarch-merged.owl EMAPA:35578|EHDAA2:0001842|MA:0000165 Added for consistency with MA EMAPA and EHDAA2. See https://github.com/obophenotype/mouse-anatomy-ontology/issues/104 uberon owl:Class UBERON:0018257 biolink:NamedThing submucosa of digestive tract Any portion of submucosa that lines the digestive tract. monarch-merged.owl uberon owl:Class UBERON:0018260 biolink:NamedThing layer of muscle tissue Any organ component layer that consists of muscle tissue. monarch-merged.owl UMLS:C0225358|FMA:45634|NCIT:C75444 uberon owl:Class NCITA class may refer to smooth muscle only UBERON:0018264 biolink:NamedThing dorsal lateral ganglionic eminence The dorsal region of the lateral ganglionic eminence. The cells in this area give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb. monarch-merged.owl uberon owl:Class UBERON:0018297 biolink:NamedThing resorption pit A pit formed in an existing functional tooth, causing resorption of the surrounding dentine and periodontal tissues. (modified from LeBlanc and Reisz 2013, see figures 8, 10 for more details). monarch-merged.owl UBERONTEMP:4fffbeb1-0774-4eb2-860e-5b50dece221c uberon owl:Class UBERON:0018305 biolink:NamedThing bicipital surface Region of the humerus associated with the biceps attachment areas. monarch-merged.owl UBERONTEMP:1aa93660-3c3d-4aff-94fa-93ea38c82df8 uberon owl:Class UBERON:0018316 biolink:NamedThing cuboid facet of calcaneum Facet on the anterior surface of the calcaneus (as called calcaneum) for the articulation of the cuboid bone. monarch-merged.owl UBERONTEMP:a3287636-2522-466e-9310-942cc1f3cd35 uberon owl:Class UBERON:0018318 biolink:NamedThing entocarotid fossa A depression on the lateral surface of the braincase posterior to the Vidian canal (Conrad 2008). monarch-merged.owl UBERONTEMP:0ac04df7-2f9b-4c8a-bb52-f46b396e82b9 uberon owl:Class UBERON:0018338 biolink:NamedThing medial cotyla The medialmost of the cotyla of the lower jaw, for articulation with the cranium. monarch-merged.owl UBERONTEMP:2d15fa5d-566b-4428-83e4-753ae839a965 According to Uberon mandible only denotes the dentary of mammals. THis is incorrect[PHENOSCAPE:ad] uberon owl:Class UBERON:0018361 biolink:NamedThing suborbital shelf On the neurocranium, a horizontal plate arising on the ventral junction of the orbital wall and basal plate on each side which extends from the nasal capsule to the otic capsule; it forms the floor of the orbit. monarch-merged.owl UBERONTEMP:2b933bd2-0562-4624-8d49-ec5325a2da54 Definition from: LJV Compagno. 2002. Sharks of the World Volume 2; FAO Species Catalogue for Fishery Purposes No. 1 uberon owl:Class A well-developed suborbital shelf is apparently primitive for shark-like fishes but is variably telescoped, reduced or lost in many squalomorph sharks and a few galeomorphs. UBERON:0018365 biolink:NamedThing supratemporal process Process of the parietal. monarch-merged.owl UBERONTEMP:4d719e1e-df5d-4735-9490-45e6e22b549a uberon owl:Class UBERON:0018543 biolink:NamedThing lumen of intestine The anatomical space within the intestine. monarch-merged.owl intestine lumen|intestinal lumen|gut lumen ZFA:0005807|WBbt:0005791|TADS:0000495|FMA:14586 see notes in inclusivity in class 'intestine' uberon owl:Class UBERON:0018674 biolink:NamedThing heart vasculature An interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart. monarch-merged.owl cardiac vasculature ZFA:0005811|FMA:73747 uberon owl:Class UBERON:0018687 biolink:NamedThing glial limiting membrane The meshwork of astrocytic foot processes (glial end feet) covered by a basal lamina adjacent to the inner pial surface of the central nervous system. monarch-merged.owl glia limitans Wikipedia:Glia_limitans|NIF_Subcellular:nlx_subcell_100209 uberon owl:Class UBERON:0019207 biolink:NamedThing chorioretinal region The part of the eye that consists of both the retina and the optic choroid|The part of the eye that consists of both the retina and the optic choroid. monarch-merged.owl retinachoroid|chorioretina|retinachoroidal region|choroid and retina SCTID:110701000 uberon owl:Class UBERON:0019315 biolink:NamedThing meibum An oily substance that prevents evaporation of the eye's tear film.|an oily substance that prevents evaporation of the eye's tear film monarch-merged.owl tarsal gland secretion uberon owl:Class provides barrier to prevent dessication of cornea[ISBN:0123813611] part of surface lipid layer of tear film UBERON:0022275 biolink:NamedThing colic flexure A sharp bend between consecutive segments of the colon. monarch-merged.owl flexura coli SCTID:245426004|FMA:14555 uberon owl:Class UBERON:0022283 biolink:NamedThing pineal recess of third ventricle The diverticulum of the thin roof of the dorsocaudal third ventricle that projects into the stalk of the pineal gland. monarch-merged.owl recessus pinealis|recessus epiphysis|pineal recess|pineal recess of 3V http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=456|DHBA:266441661|FMA:78458|SCTID:280070003|EMAPA:18542|SCTID:369281005|Wikipedia:Pineal_recess uberon owl:Class UBERON:0022287 biolink:NamedThing tear film An aqueous substance that covers the anterior surface of the eyeball, keeping the cornea wet. monarch-merged.owl precorneal film uberon owl:Class the thin acellular fluid layer that adheres to the most superficial layer of the corneal epithelium and lubricates and protects the ocular surface; the film is generally composed of three layers: (i) an inner mucous layer, secreted largely by the conjunctival goblet cells with contributions from the lacrimal glands, which coats the cornea, provides a hydrophobic layer, and allows for even distribution of the tear film; (ii) a middle aqueous layer, secreted by the lacrimal glands, which keeps the corneal surface moist, and provides a mechanism for oxygenation and nutrient exchange with the avascular anterior corneal tissue; and (iii) an outer lipid layer, secreted principally by the Meibomian (tarsal) glands although lipid tear elements also are contributed by the Harderian glands; tear film lipids form a monolayer on the tear surface, and function by enhancing the surface tension which supports the integrity of the tear film against collapse due to gravity and also slows down the loss of the tear film by evaporation; in addition , the lipid layer provides a glassy, smooth interface between the air and the transparent cornea maintenance of the avascular transparent corneal epithelium The tear film is structurally complex with three distinct layers: a surface lipid layer, a middle aqueous layer, and an inner mucus layer[http://physiologyonline.physiology.org/content/13/2/97] UBERON:0022288 biolink:NamedThing surface of eyeball monarch-merged.owl surface of region of wall of eyeball FMA:58315 uberon owl:Class UBERON:0022303 biolink:NamedThing nervous system cell part layer Single layer of a laminar structure, identified by different density, arrangement or size of cells and processes arranged in flattened layers or lamina[CUMBO]. monarch-merged.owl layer|lamina NLX:149357 this is currently used to group some cellular layers that may not strictly conform to the CARO definition of cell-part layer. Consider genericisizing and introducing subtypes for cellular layer, fibrous layer and cell soma layer uberon owl:Class UBERON:0022320 biolink:NamedThing dorsal cochlear nucleus pyramidal cell layer monarch-merged.owl NLX:153848 uberon owl:Class UBERON:0022776 biolink:NamedThing composite part spanning multiple base regional parts of brain monarch-merged.owl composite part spanning multiple base regional parts of brain BIRNLEX:1304 uberon owl:Class UBERON:0023879 biolink:NamedThing neural system A set of neural structures that subserve a specific function, e.g., visual system.|A set of neural structures that subserve a specific function, e.g., visual system monarch-merged.owl neural system NLXANAT:090802 this class was inherited from NIFSTD as part of the replacement of NIFSTD with Uberon. It may be obsoleted in the future uberon owl:Class UBERON:0027513 biolink:NamedThing posterior superior frontal sulcus monarch-merged.owl posterior superior frontal sulcus BIRNLEX:1130 uberon owl:Class UBERON:0027716 biolink:NamedThing anterior superior frontal sulcus monarch-merged.owl polar notch|anterior superior frontal sulcus|sulcus frontalis superior anterior BIRNLEX:1338|http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=838 uberon owl:Class UBERON:0028395 biolink:NamedThing calcarine sulcus (dorsal) monarch-merged.owl calcarine sulcus (dorsal) BIRNLEX:4050 uberon owl:Class UBERON:0028396 biolink:NamedThing calcarine sulcus (ventral) monarch-merged.owl calcarine sulcus (ventral) BIRNLEX:4051 uberon owl:Class UBERON:0028622 biolink:NamedThing banks of superior temporal sulcus Component of the temporal lobe, lateral aspect. The rostral boundary is the superior temporal gyrus and the caudal boundary the middle temporal gyrus. Within the FreeSurfer definition, this reflects primarily the posterior aspect of the superior temporal sulcus (Christine Fennema-Notestine). monarch-merged.owl banks of superior temporal sulcus BIRNLEX:862 uberon owl:Class UBERON:0034705 biolink:NamedThing developing neuroepithelium An embryonic or larval epithelium that is committed to form part of the nervous system. monarch-merged.owl embryonic neuroepithelium|neuroepithelium|neurepithelium AEO:0001008|FMA:64807|BTO:0000314|EHDAA2_RETIRED:0004654 uberon owl:Class UBERON:0034767 biolink:NamedThing buccal vestibule The buccal vestibule is the space external to teeth and gums and internal to lips and cheeks. The proportion of its walls formed by the lips varies according to species depending upon their feeding action. The horse like most herbivores has a relatively small opening. PPP The buccal vestibule opens to the outside rostrally via a U shaped slit the oral fissure. PPP When the mouth is closed the buccal vestibule and the mouth cavity proper connect via spaces between and behind the teeth. These allow free communication between the two sides of the vestibule. PPP Several salivary ducts open into the dorso caudal part of the vestibule: PPP Parotid gland - opens into the cheek on the small parotid papilla, opposite to the caudal part of upper 4 th premolar teeth PPP Zygomatic gland - the main duct opens in the caudal part of the upper 1 st molar tooth on a small papilla near the vestibular fornix PPP Submucous glands - minimal in number, confined to the lower lip and adjacent part of the cheek. Secretion occurs through about 10 openings located near the fornix of the vestibule. monarch-merged.owl MURDOCH:240|FMA:289320 uberon owl:Class UBERON:0034877 biolink:NamedThing angioblastic cord The cordlike masses of splanchnic mesenchymal cells ventral to the primordial pericardial coelom that arrange themselves side by side to form the primordia of the endocardial heart tubes. monarch-merged.owl angiogenic cell cluster NCIT:C34106|UMLS:C1515990 resolve placement within heart development hierarchy; potentially merge with existing classes uberon owl:Class day 18 [CS08] in human[https://embryology.med.unsw.edu.au/embryology/index.php/Intermediate_-_Primordial_Heart_Tube] UBERON:0034878 biolink:NamedThing prechordal mesoderm The area of axial mesoderm that develops into the prechordal plate.|the area of axial mesoderm that develops into the prechordal plate monarch-merged.owl prechordal mesenchyme uberon owl:Class UBERON:0034928 biolink:NamedThing dorsal surface of penis monarch-merged.owl dorsum of penis|dorsum penis FMA:19623 uberon owl:Class UBERON:0034929 biolink:NamedThing external soft tissue zone A region or zone on the surface of an organism that encompasses skin and any adnexa, down through muscles and bounded by underlying skeletal support structures. monarch-merged.owl uberon owl:Class UBERON:0034937 biolink:NamedThing pharyngeal bar monarch-merged.owl gill bar|branchial bar uberon owl:Class Haikouella possessed a small number of pharyngeal bars that may have been composed of mucocartilage, as in modern lampreys (Holland and Chen, 2001). the pharyngeal bars of Haikouella were probably derived from neural crest, as were the sensory components of the cranial nerves that innervated its pharyngeal muscles[http://icb.oxfordjournals.org/content/42/4/743.full] UBERON:0034995 biolink:NamedThing jaw mesenchyme Mesenchyme that is part of a developing jaw [Automatically generated definition]. monarch-merged.owl EMAPA:32907|EMAPA:35454 uberon owl:Class UBERON:0035004 biolink:NamedThing preputial swelling monarch-merged.owl EMAPA:35702 uberon owl:Class UBERON:0035038 biolink:NamedThing carpal tunnel The fibro-osseous passageway on the palmar side of the wrist that connects the distal forearm to the middle compartment of the deep plane of the palm. monarch-merged.owl carpal canal|carpel tunnel Wikipedia:Carpal_tunnel|FMA:42352 uberon owl:Class UBERON:0035088 biolink:NamedThing vertebral fracture plane A plane of autotomy that divides an appendage through a vertebral bone. monarch-merged.owl plane of autotomy bisecting vertebral bone uberon owl:Class Interestingly, zones of cartilage or connective tissue do not demarcate the fracture planes in A. carolinensis, as seen in other lizard taxa (Cox, 1969a; Hoffstetter and Gasc, 1969)[PMID:22753107]|Many authors (e.g., Holder, 1960; Mufti and Hafiz, 1972; Bellairs and Bryant, 1985; Russell and Bauer, 1992) have referred to the more proximal caudal vertebrae that lack fracture planes as 'pygal vertebrae' and the more distal caudal vertebrae that possess fracture planes as 'postpygal vertebrae' However, many lizard taxa lack fracture planes in their caudal vertebrae altogether, making this classification difficult to apply in these cases (Etheridge, 1967; Bellairs and Bryant, 1985). Furthermore, in some species (including A. carolinensis) the most distal of the transverse process-bearing vertebrae may possess fracture planes and should technically be called postpygal vertebrae, despite the fact that they more closely resemble the more proximal, non-fracture plane-bearing vertebrae in overall morphology (Cox, 1969a)[PMID:22753107] UBERON:0035090 biolink:NamedThing plane of autotomy bisecting intervertebral joint A plane of autotomy that divides an appendage in the space between vertebrae. monarch-merged.owl uberon owl:Class UBERON:0035133 biolink:NamedThing longitudinal arch of pes A curved region of the skeleton of the pes (foot) formed by the tarsal and metatarsal bones. monarch-merged.owl longitudinal arch of foot Wikipedia:Arches_of_the_foot|FMA:75030 uberon owl:Class in FMA this is modeled as an anatomical line, here we model as an actual subdivision of the skeletal system, containing a row of bones as parts, arranged in a particular configuration UBERON:0035144 biolink:NamedThing preputial space Space between the prepuce and glans penis or clitoris. monarch-merged.owl preputial cavity FMA:28606 uberon owl:Class UBERON:0035149 biolink:NamedThing gingival epithelial attachment monarch-merged.owl SCTID:85036004 uberon owl:Class UBERON:0035177 biolink:NamedThing abdominal part of esophagus Clinical esophageal segment composed of smooth muscle. It corresponds to the inferior part of the lower third topographic segment of the esophagus. monarch-merged.owl T11 part of esophagus|pars abdominalis oesophageae|t11 segment of esophagus|abdominal part of oesophagus|pars abdominalis (oesophagus)|abdominal esophagus UMLS:C0227190|FMA:9397|SCTID:245407007|NCIT:C12252 uberon owl:Class UBERON:0035186 biolink:NamedThing valve of foramen ovale monarch-merged.owl foramen ovale valve FMA:75348|UMLS:C1519951|SCTID:188958004|NCIT:C34326 uberon owl:Class UBERON:0035216 biolink:NamedThing thoracic part of esophagus Zone of esophagus located in the thorax. monarch-merged.owl pars thoracica oesophageae|thoracic part of oesophagus|thoracic esophagus|pars thoracica (oesophagus) SCTID:245406003|UMLS:C0227188|NCIT:C12251|FMA:9396 uberon owl:Class UBERON:0035228 biolink:NamedThing tonsillar fossa Between the plica triangularis and the surface of the palatine tonsils is a space known as the tonsillar fossa (or tonsillar sinus); in many cases, however, this sinus is obliterated by its walls becoming adherent. monarch-merged.owl tonsillar sinus|tonsillar bed FMA:55041|SCTID:362596009|UMLS:C0229881|NCIT:C12235|Wikipedia:Tonsillar_fossa uberon owl:Class UBERON:0035243 biolink:NamedThing anal sinus Furrows, with pouchlike recesses at the lower end, separating the rectal columns. monarch-merged.owl anal crypt NCIT:C32070|FMA:15717|Wikipedia:Anal_sinuses|SCTID:245447000|UMLS:C0227427 uberon owl:Class UBERON:0035310 biolink:NamedThing inferolateral surface of prostate The aspect of the prostate facing the pelvic diaphragm and pubis. monarch-merged.owl inferolateral surface of prostate gland|facies inferolaterales (prostatae)|facies inferolateralis prostatae SCTID:279698000|NCIT:C13090|FMA:19596|UMLS:C0227962 uberon owl:Class UBERON:0035368 biolink:NamedThing anterior surface of kidney The aspect of the kidney facing the abdominal cavity. monarch-merged.owl facies anterior renis|facies anterior (Ren) FMA:15589|UMLS:C0227609|SCTID:279375001|NCIT:C32107 uberon owl:Class UBERON:0035377 biolink:NamedThing transverse fold of rectum One of the semi-lunar transverse folds of the rectal wall that protrude into the anal canal. monarch-merged.owl horizontal fold of rectum|transverse rectal fold Wikipedia:Houston_valve|SCTID:259687002|NCIT:C33807|UMLS:C0227403|FMA:15722 uberon owl:Class Their use seems to be to support the weight of fecal matter, and prevent its urging toward the anus, which would produce a strong urge to defecate UBERON:0035441 biolink:NamedThing apex of prostate The lowest part of the prostate gland adjacent to the superior fascia of the urogenital diaphragm. monarch-merged.owl prostatic apex|apex of prostate gland NCIT:C13087|SCTID:279703006|FMA:19594|UMLS:C0227959 uberon owl:Class UBERON:0035450 biolink:NamedThing cervical part of esophagus Clinical esophageal segment composed of skeletal muscle. It corresponds to the superior part of the upper third topographic segment of the esophagus. monarch-merged.owl pars cervicalis (oesophagus)|pars colli oesophageae|pars cervicalis oesophageae|cervical esophagus|cervical part of oesophagus FMA:9395|NCIT:C12250|UMLS:C0227186|SCTID:245405004 uberon owl:Class UBERON:0035465 biolink:NamedThing endometrial cavity A space inside the uterus lined by a layer of mucus membranes called the endometrium. monarch-merged.owl cavity of body of uterus|intrauterine cavity|endometrial cavity|endometrial lumen NCIT:C32514|FMA:18076|UMLS:C0227844|Wikipedia:Uterine_cavity|SCTID:362257002 uberon owl:Class UBERON:0035468 biolink:NamedThing costodiaphragmatic recess The angled junction where the diaphragm meets the chest wall. monarch-merged.owl costophrenic angle UMLS:C0230151|Wikipedia:Costodiaphragmatic_recess|NCIT:C32393|SCTID:46297007|FMA:11355 uberon owl:Class UBERON:0035471 biolink:NamedThing posterior surface of kidney monarch-merged.owl facies posterior renis|facies posterior (Ren) NCIT:C32895|UMLS:C0227610|FMA:15590|SCTID:279376000 uberon owl:Class UBERON:0035480 biolink:NamedThing surface of prostate The external portion of the prostate including the anterior, inferolateral, lateral and posterior surfaces. monarch-merged.owl prostatic surface|surface of prostate gland UMLS:C0426735|SCTID:279694003|FMA:19590|NCIT:C13091 uberon owl:Class UBERON:0035495 biolink:NamedThing hilum of lymph node The concave side of the lymph node. monarch-merged.owl hilum nodi lymphoidei|lymph node hilum SCTID:327052008|UMLS:C0229703|FMA:62842|NCIT:C33031 uberon owl:Class UBERON:0035611 biolink:NamedThing hair peg Column of keratinocytes growing into the dermis during embryonic hair follicle development. The concave proximal end starts to encase the dermal condensate, the future dermal papilla. monarch-merged.owl uberon owl:Class UBERON:0035612 biolink:NamedThing nasal turbinal A skeletal element of the ethmoid region with complex morphology that are lined with mucuous membranes involved in either olfaction or air conditioning. monarch-merged.owl nasal concha|conchae nasales|nasal turbinal|turbinate|concha|turbinal|nasal turbinal element|nasal turbinate consult http://www.ncbi.nlm.nih.gov/pubmed/25312359 to add missing structures, e.g. ectoturbinals uberon owl:Class unossified in dinosaurs[http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] UBERON:0035763 biolink:NamedThing cavity of cardiac chamber monarch-merged.owl heart lumen|heart cavity|cardiac chamber cavity EHDAA2:0004181|FMA:9464 uberon owl:Class UBERON:0035804 biolink:NamedThing future mouth The primordial mouth region of the developing head. monarch-merged.owl primitive mouth|primordial mouth FMA:293105 uberon owl:Class UBERON:0035819 biolink:NamedThing abdominopelvic cavity The part of the ventral body cavity that is within the abdominal segment of the trunk, which encompasses the abdomen proper plus pelvic cavity. monarch-merged.owl cavitas abdominis et pelvis FMA:12267|Wikipedia:Abdominopelvic_cavity uberon owl:Class UBERON:0035942 biolink:NamedThing space between upper and lower jaws The space between the upper jaw skeleton and lower jaw skeleton (including teeth) that is formed when when biting. monarch-merged.owl bite uberon owl:Class UBERON:0035956 biolink:NamedThing epididymal lumen The lumen of the epididymis|The lumen of the epididymis. monarch-merged.owl epididymis lumen|lumen of epididymis SCTID:367722009|FMA:18274 uberon owl:Class UBERON:0035962 biolink:NamedThing supravaginal part of cervix Supravaginal portion of cervix: the part of the cervix uteri that does not protrude into the vagina. monarch-merged.owl portio supravaginalis cervicis BTO:0001851|FMA:77055 uberon owl:Class UBERON:0035963 biolink:NamedThing epithelial lining fluid Epithelial lining fluid forms a thin fluid layer that covers the mucosa of the alveoli, the small airways, and the large airways. monarch-merged.owl ELF BTO:0005566|FMA:276456 uberon owl:Class UBERON:0036069 biolink:NamedThing tracheoesophageal fold One of two longitudinal ridges that develop caudal to the pharynx and fuses to give rise to the tracheoesophageal septum. monarch-merged.owl esophagotracheal fold NCIT:C34315 uberon owl:Class UBERON:0036144 biolink:NamedThing incisive duct An infrequent rudimentary duct, or protrusion of the mucous membrane into the incisive canal, on either side of the anterior extremity of the nasal crest. monarch-merged.owl ductus incisivus FMA:77282 Taxon notes notes: In domestic mammals the Ductus incisivus is considerably better developed than in man. It is not accommodated in a Canalis incisivus, as in man, but in the Fissura palatina[NOMINA ANATOMICA VETERINARIA (2005)] uberon owl:Class horses exhibit Flehmen response but do not have an incisive duct communication between the nasal and the oral cavity because they do not breathe through their mouths, instead, the VNOs connect to the nasal passages by the nasopalatine duct UBERON:0036145 biolink:NamedThing glymphatic system Macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system. monarch-merged.owl EMAPA:37872 uberon owl:Class hypothesized to be have roles such as waste clearance, distribution of compounds UBERON:0036185 biolink:NamedThing Sertoli cell barrier The blood-testis barrier (abbreviated as BTB) is a physical barrier between the blood vessels and the seminiferous tubules of the animal testes. The barrier is formed by tight connections between the Sertoli cells, which are sustentacular cells (supporting cells) of the seminiferous tubules, and nourish the spermatogonia. The barrier prevents passage of cytotoxic agents (bodies or substances that are toxic to cells) into the seminiferous tubules. monarch-merged.owl blood-testes barrier|blood testis barrier MESH:G06.535.166.330.100|Wikipedia:Blood-testis_barrier uberon owl:Class UBERON:0036262 biolink:NamedThing uterine ligament Any of the eight ligaments pertaining to the uterus including the anterior, posterior, lateral, sacro-uterine and round ligaments. monarch-merged.owl NCIT:C61360|SCTID:272668006 uberon owl:Class UBERON:0036271 biolink:NamedThing omphalopleure A fetal membrane, part of the yolk sac, that appears during some placentation processes. monarch-merged.owl uberon owl:Class UBERON:0036292 biolink:NamedThing adnexa of uterus The fallopian tubes and ovaries. monarch-merged.owl uterine adnexa|adnexa uteri SCTID:361373008|Wikipedia:Adnexa_of_uterus|FMA:265256 uberon owl:Class UBERON:0036301 biolink:NamedThing vasculature of spleen monarch-merged.owl SCTID:297287005|FMA:225251 uberon owl:Class UBERON:0036303 biolink:NamedThing vasculature of central nervous system monarch-merged.owl FMA:259905 uberon owl:Class UBERON:2000004 biolink:NamedThing anterior axial hypoblast monarch-merged.owl pre-polster ZFA:0000004 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000058 biolink:NamedThing polster The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995. monarch-merged.owl pillow ZFA:0000058 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000068 biolink:NamedThing neural plate proneural cluster monarch-merged.owl neural plate proneural clusters|proneural cluster ZFA:0000068 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000088 biolink:NamedThing yolk syncytial layer Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. Kimmel et al, 1995. monarch-merged.owl periblast|YSL ZFA:0000088 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000241 biolink:NamedThing midline column monarch-merged.owl ZFA:0000241 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000309 biolink:NamedThing external yolk syncytial layer The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995. monarch-merged.owl E-YSL ZFA:0000309 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000414 biolink:NamedThing presumptive cephalic mesoderm monarch-merged.owl ZFA:0000414 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000461 biolink:NamedThing Weberian ossicle Bone that is an element associated with a Weberian vertebra. monarch-merged.owl Weberian ossicles ZFA:0000461 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000542 biolink:NamedThing medial column monarch-merged.owl ZFA:0000542 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000611 biolink:NamedThing visceromotor column monarch-merged.owl ZFA:0000611 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000711 biolink:NamedThing DEL A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995. monarch-merged.owl deep cell layer|DEL cells ZFA:0000711 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000712 biolink:NamedThing internal yolk syncytial layer The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995. monarch-merged.owl I-YSL ZFA:0000712 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2000820 biolink:NamedThing presumptive neuron neural tube monarch-merged.owl presumptive neurons neural tube ZFA:0000820 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001055 biolink:NamedThing pronephric duct opening monarch-merged.owl ZFA:0001055 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001076 biolink:NamedThing intestinal bulb This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005. monarch-merged.owl anterior intestine ZFA:0001076 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001089 biolink:NamedThing myoseptum monarch-merged.owl ZFA:0001089 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001095 biolink:NamedThing immature macula An otic sensory epithelium that will develop into the mature macula. monarch-merged.owl immature sensory patch|immature sensory patches|immature maculae ZFA:0001095 teleost_anatomy_curators uberon owl:Class UBERON:2001125 biolink:NamedThing organizer inducing center The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999. monarch-merged.owl Nieuwkoop center ZFA:0001125 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001188 biolink:NamedThing Weberian apparatus Anatomical cluster that consists of the anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear. monarch-merged.owl ZFA:0001188 Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi. teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001277 biolink:NamedThing anterior chamber swim bladder The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006. monarch-merged.owl ZFA:0001277 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001278 biolink:NamedThing posterior chamber swim bladder The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006. monarch-merged.owl ZFA:0001278 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001341 biolink:NamedThing intervening zone A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003. monarch-merged.owl IZ ZFA:0001341 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001342 biolink:NamedThing presumptive intervening zone monarch-merged.owl ZFA:0001342 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001343 biolink:NamedThing telencephalon diencephalon boundary monarch-merged.owl ZFA:0001343 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001363 biolink:NamedThing neural complex of Weberian apparatus Anatomical cluster that consists of supraneural 2 bone and supraneural 3 bone and their extensions, and which is part of the Weberian apparatus. monarch-merged.owl Weberian supraneural|neural complex ZFA:0001363 teleost_anatomy_curators UBERON:2001398 uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001378 biolink:NamedThing axial hypoblast monarch-merged.owl ZFA:0001378 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001388 biolink:NamedThing epithelial mesenchymal boundary of regenerating fin/limb A epithelial-mesenchymal boundary that is part of a regenerating fin/limb.|An epithelial-mesenchymal boundary that is part of a regenerating fin/limb. monarch-merged.owl TAO:0001388|ZFA:0001388 uberon owl:Class UBERON:2001389 biolink:NamedThing regeneration epithelium of fin/limb An epithelium that is part of a regenerating fin/limb.|A epithelium that is part of a regenerating fin/limb. monarch-merged.owl wound epithelium of fin|wound epidermis|wound epidermis of fin|epidermal cap of fin|wound epithelium|epidermal cap ZFA:0001389|TAO:0001389|EFO:0003682 uberon owl:Class UBERON:2001430 biolink:NamedThing pneumatic duct A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006. monarch-merged.owl ZFA:0001430 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001437 biolink:NamedThing ductus communicans The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. Finney et al, 2006. monarch-merged.owl ZFA:0001437 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001806 biolink:NamedThing intracranial diverticulum of swimbladder An anterior extension of the swimbladder that passes through a foramen in the exoccipital; part of the otophysic connection between swimbladder and inner ear. monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001871 biolink:NamedThing Weberian ossicle set Anatomical cluster that consists of the Weberian ossicles. monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2001990 biolink:NamedThing epibranchial arborescent organ Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired. monarch-merged.owl suprabranchial organ Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002051 biolink:NamedThing scale circulus Fine ridge on surface of scale, often parallel to the circumference of scale. monarch-merged.owl circuli|crétule ZFA:0005499 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002057 biolink:NamedThing gill opening Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head. monarch-merged.owl opercular opening|gill aperture|branchial opening|branchial aperture ZFA:0005389 In teleosts, there is typically a single gill opening posterior to the operculum. teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002116 biolink:NamedThing epibranchial organ monarch-merged.owl teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002118 biolink:NamedThing scale radius Erosion channel that radiates out from the growth center (focus) of the scale across and through the circuli. monarch-merged.owl radii teleost_anatomy_curators uberon owl:Class UBERON:2002129 biolink:NamedThing caudal rod Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage. monarch-merged.owl hypural-opisthural rod Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA . Journal of Vertebrate Paleontology 27(1):17-25 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002130 biolink:NamedThing caudal appendage Multi-tissue structure that is region of the body posterior to the last anal-fin ray. monarch-merged.owl caudal filament Comments: This is a gymnotiform structure. The caudal appendage can include vertebrae, a cartilginous rod, pterygiophores, anal-fin rays, and intermuscular bones. Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA. Journal of Vertebrate Paleontology 27(1):17-25. teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2002224 biolink:NamedThing pleuroperitoneal cavity monarch-merged.owl ZFA:0001656 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2005122 biolink:NamedThing dorsal axial hypoblast monarch-merged.owl ZFA:0005122 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2005149 biolink:NamedThing distal epidermal cap of regenerating fin/limb Part of regeneration epithelium at the tip of the fin/limb [ZFA,modified]. monarch-merged.owl ZFA:0005149|TAO:0005149 uberon owl:Class UBERON:2005150 biolink:NamedThing basal regeneration epithelium of regenerating fin/limb Layer of the wound epidermis that surrounds the blastema in the fin or limb[ZFA,modified]. monarch-merged.owl basal wound epidermis TAO:0005150|ZFA:0005150 uberon owl:Class UBERON:2005256 biolink:NamedThing intervillus pockets A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. monarch-merged.owl ZFA:0005256 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2005272 biolink:NamedThing immature gonad Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes. monarch-merged.owl juvenile gonad ZFA:0005272 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2005338 biolink:NamedThing posterior recess Posterior protrusion of the third ventricle. monarch-merged.owl posterior recess of diencephalic ventricle ZFA:0005338 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2005409 biolink:NamedThing pars superior ear The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle. monarch-merged.owl ZFA:0005409 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2005410 biolink:NamedThing pars inferior ear The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs. monarch-merged.owl ZFA:0005410 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2007027 biolink:NamedThing forebrain midbrain boundary neural keel monarch-merged.owl ZFA:0007027 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2007033 biolink:NamedThing forebrain midbrain boundary neural rod monarch-merged.owl ZFA:0007033 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2007040 biolink:NamedThing forebrain midbrain boundary neural tube monarch-merged.owl ZFA:0007040 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2007045 biolink:NamedThing midbrain hindbrain boundary neural keel monarch-merged.owl ZFA:0007045 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2007046 biolink:NamedThing midbrain hindbrain boundary neural rod monarch-merged.owl ZFA:0007046 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:2007047 biolink:NamedThing midbrain hindbrain boundary neural tube monarch-merged.owl ZFA:0007047 teleost_anatomy_curators uberon owl:Class This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000226 biolink:NamedThing hyolaryngeal complex Complex formed by two units, the hyoid and laryngeal apparatuses, which are both derived from the larval hyobranchial skeleton. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000295 biolink:NamedThing median symphysis monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000539 biolink:NamedThing recessus marsupiatus of premaxilla Is a recess on the surface of the premaxilla near to the base of the pars facialis. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000540 biolink:NamedThing recessus vaginiformis Is a space on the interior surface of the pars facialis of the maxilla. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000581 biolink:NamedThing sulcus dentalis of maxilla Groove located between the pars dentalis and the bases of the maxillary teeth. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000582 biolink:NamedThing sulcus dentalis of premaxilla Groove located between the pars dentalis and the bases of the premaxillary teeth. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000583 biolink:NamedThing sulcus for Meckels cartilage A groove on the palatoquadrate that is occupied by the Meckel's cartilage. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000597 biolink:NamedThing symphysis maxillaris monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000652 biolink:NamedThing fossa maxillaris Depression lacated on the inner surface of the maxilla between the palatine process and the pars palatina. monarch-merged.owl maxillary saddle Alternative more fish orientated definition: A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]. [PHENOSCAPE] amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000668 biolink:NamedThing hyoglossal sinus Is the space along the anterior edge of the hyoid plate between the hyale and through which passes the hyoglossus muscle as it passes dorsally into the tongue. monarch-merged.owl A anuran (frog) term amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000743 biolink:NamedThing sacral condyle Anterior, paired convex facets for articulation with the cotyle(s) of the urostyle. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000745 biolink:NamedThing webbing of bone in vertebral column In anurans, pair of bony plates that connect the posteromedial margins of the sacral diapophyses with the lateral margins of the anterior portion of the urostyle. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000759 biolink:NamedThing omosternum Proximal portion of the prezonal element of the pectoral girdle. It may be a flat, midventral cartilaginous structure or a calcified or bony element elaborated into a stylum. monarch-merged.owl prezonal sternum|prezonal element|sternum superior|episternum|interclavicle amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000763 biolink:NamedThing epicoracoid bridge A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project anteriorly. They articulate anteriorly with the omosternum. monarch-merged.owl procoracoid bridge amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000777 biolink:NamedThing epicoracoid horn A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project posteriorly. They articulate with the sternum by means of grooves, pouches or fossae in the dorsal surface of the sternum and provide a site for the insertion of a pair of muscles derived from the m. rectus abdominis. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000780 biolink:NamedThing incisura coracoidea Notch that separates the cartilaginous regions of the procoracoid and coracoid. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000786 biolink:NamedThing fossa cubitalis ventralis Depresion on the distal end of the humerus, just anterior to the humeral head, in which the end of the radius fits when the forelimb is flexed. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000798 biolink:NamedThing presacral shield Dorsal, dermal plate of bone that overlies the presacral vertebrae. Such shield usually has irregular, sculptured surfaces, frequently is broadly expanded, and may be composed of several separate plates. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000809 biolink:NamedThing accessory articulation Paired, additional vertebral articulations located medial to the intervertebral space, adjacent to the vertebral centrum. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000813 biolink:NamedThing sulcus pro cartilagine praecoracoidealis Canal on the posterior aspect of the clavicle that accomodates the anterior margin of the procoracoid cartilage. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000823 biolink:NamedThing sinus interglenoidalis Notch or indentation between the pars glenoidalis and pars acromialis of the scapula. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000833 biolink:NamedThing sinus dorsalis Notch or indentation between the anterior and posterior rami of the cleithrum. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000896 biolink:NamedThing foveal depression Ovoid roughened pit situated on the dorsal and anteroventral surface of the acetabular head wherein the ligaments attaching the bone to the acetabulum are inserted. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3000915 biolink:NamedThing spatium intertarsale Separation of the tibiale and fibulare along their longitudinal axia. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010138 biolink:NamedThing trabecular horn Anterior extensions. monarch-merged.owl trabecular horns amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010197 biolink:NamedThing lateral recess A part of the inferior cavity of the olfactory organ, found in anurans. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010243 biolink:NamedThing ventricular musculature monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010431 biolink:NamedThing archenteron floor monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010432 biolink:NamedThing archenteron roof monarch-merged.owl gastrocoel roof amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010455 biolink:NamedThing blastopore lip monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010463 biolink:NamedThing animal cap monarch-merged.owl animal ectoderm amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010464 biolink:NamedThing animal cap inner layer monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010465 biolink:NamedThing animal cap outer layer monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010529 biolink:NamedThing ovisac Part of the ovary consisting of a thin sheath of connective tissue enclosing the ovarian follicles. monarch-merged.owl amphibian_anatomy_curators UBERON:3010782 uberon owl:Class UBERON:3010557 biolink:NamedThing triangular process monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010589 biolink:NamedThing cloacal papilla A small, ridge-like projection from the antero-ventral wall of the cloacal chamber. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010613 biolink:NamedThing laryngo-tracheal chamber Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class UBERON:3010671 biolink:NamedThing ramule palatonasalis Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010693 biolink:NamedThing ramus posterior profundus of V3 In the adult anuran, this innervates the muscles levator mandibulare internus and longus. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010720 biolink:NamedThing ramus hyomandibularis The posttrematic branch of the facial nerve, both motor and sensory in function. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010726 biolink:NamedThing ramus muscularis of glossopharyngeus nerve Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010750 biolink:NamedThing descending branch of the vagus nerve Major branch of the vagus supplying parasympathetic innervation to viscera. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010751 biolink:NamedThing ramus muscularis of vagus nerve Motor nervous branch of the vagus innervating m. subarcualis rectus I. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010754 biolink:NamedThing ramus recurrens Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx. monarch-merged.owl amphibian_anatomy_curators uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3011120 biolink:NamedThing early proximal tubule monarch-merged.owl PT2 amphibian_anatomy_curators 2011-04-20T05:19:55Z uberon owl:Class This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:4000119 biolink:NamedThing non-mineralized avascular GAG-rich matrix Avascular GAG-rich matrix that is not mineralized. monarch-merged.owl non-mineralized cartilage vertebrate_skeletal_anatomy_curators uberon owl:Class This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:4000120 biolink:NamedThing mineralized avascular GAG-rich matrix Avascular GAG-rich matrix that is mineralized. monarch-merged.owl vertebrate_skeletal_anatomy_curators uberon owl:Class This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:4100121 biolink:NamedThing thagomizer The distinctive arrangement of four to ten spikes on the tails of stegosaurid dinosaurs. These spikes are believed to have been a defensive measure against predators. monarch-merged.owl tail spikes The arrangement of spikes originally had no distinct name; the term Thagomizer was coined in 1982 by cartoonist Gary Larson in his comic 'The Far Side', and thereafter became gradually adopted as an informal term within scientific circles, research, and education. uberon owl:Class UBERON:4200004 biolink:NamedThing intertrochanteric fossa Depression on the ventreal side of the femoral head. Associated with the pubioischiofemoralis externus muscle. monarch-merged.owl A.Dececchi uberon owl:Class UBERON:4200020 biolink:NamedThing suprascapular fossa Fossa on the medial surface on the scapula above the glenoid. monarch-merged.owl PHENOSCAPE:ad AD uberon owl:Class UBERON:4200038 biolink:NamedThing subscapular fossa A marked depression on the medial side of the scapula blade, often opposite the glenoid region. monarch-merged.owl AD uberon owl:Class UBERON:4200043 biolink:NamedThing brevis fossa Fossa located on the brevis shelf. monarch-merged.owl AD uberon owl:Class UBERON:4200044 biolink:NamedThing articular surface for the calcaneum on the astragalus Contact surface between the calcaneum and the astragalus located on the astragalus. monarch-merged.owl AD uberon owl:Class UBERON:4200045 biolink:NamedThing articular surface for the astragalus on the calcaneum Contact surface between the calcaneum and the astragalus located on the calcaneum. monarch-merged.owl AD uberon owl:Class UBERON:4200046 biolink:NamedThing astragalo-calcaneal canal The astragalo-calcaneal canal forms a foramen between the articulated astragalus and calcaneum when the canal is ossified (Nesbitt, 2011). monarch-merged.owl AD uberon owl:Class UBERON:4200089 biolink:NamedThing fibular facet of the calcaneum Articular surface on calcaneum for the fibula. monarch-merged.owl AD uberon owl:Class UBERON:4200090 biolink:NamedThing fibular facet of the astragalus Articular surface on the astragalus for the fibula. monarch-merged.owl AD uberon owl:Class UBERON:4200092 biolink:NamedThing flexor tubercle of ungual Eminence on the proximo-dorsal surface of the ungual, for attachment of flexor muscles. monarch-merged.owl AD uberon owl:Class UBERON:4200104 biolink:NamedThing metacarpal extensor pit Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments. monarch-merged.owl AD uberon owl:Class UBERON:4200124 biolink:NamedThing sternal trabecula Anatomical projections that are elongate processes in the mid and posterior regions of the sternum. monarch-merged.owl AD uberon owl:Class UBERON:4200130 biolink:NamedThing tibial facet of astragalus Facet for the articulation of the tibia on the astragalus (talus). monarch-merged.owl AD uberon owl:Class UBERON:4200166 biolink:NamedThing hindlimb interepipodial space The space between the bones of the tibia and the fibula. monarch-merged.owl uberon owl:Class UBERON:4200185 biolink:NamedThing entepicondyle fossa A fossa on the distal humerus proximal to the entepicondyle. monarch-merged.owl uberon owl:Class UBERON:4200203 biolink:NamedThing humeral facet on the ulna Facet on the ulna for articulation with the ulnar condyle of the humerus. monarch-merged.owl uberon owl:Class UBERON:4200204 biolink:NamedThing humeral facet on radius Facet on the radius for articulation with the radial condyle of the humerus. monarch-merged.owl proximal articular surface of radius uberon owl:Class UBERON:4200214 biolink:NamedThing epipodial facet Facets for the articulation of the epipodial (zeugopodial) elements. monarch-merged.owl uberon owl:Class UBERON:4200222 biolink:NamedThing distal groove of humerus Groove along the distal margin of the humerus, ventral to the radial and ulnar condyle. monarch-merged.owl uberon owl:Class UBERON:4300006 biolink:NamedThing scale row A series of scales in alignment with each other along some axis of the body. monarch-merged.owl WD uberon owl:Class UBERON:4300035 biolink:NamedThing supraneural element Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin. monarch-merged.owl WD uberon owl:Class UBERON:4300137 biolink:NamedThing lingual region The region of an anatomical structure (such as a tooth or jaw bone) facing the tongue. monarch-merged.owl WD uberon owl:Class UBERON:4300138 biolink:NamedThing labial region The region of an anatomical structure, such as a tooth or jaw bone, facing the lips.[PHENOSCAPE:WD]. monarch-merged.owl WD uberon owl:Class UBERON:4300139 biolink:NamedThing posterolingual region The region of an anatomical structure, such as a tooth or jaw bone, oriented posteriorly and facing the lips. monarch-merged.owl WD uberon owl:Class UBERON:4300158 biolink:NamedThing ectepicondylar depression monarch-merged.owl WD uberon owl:Class UBERON:4300201 biolink:NamedThing subepiotic fossa Fossa for epaxial musculature inserting on the braincase. Forey et al. 1996. monarch-merged.owl uberon owl:Class UBERON:4300202 biolink:NamedThing endoskeletal cranial joint The braincase of most plesiomorphic sarcopterygians is divided by the intracranial point into ethmosphenoid and otic-occipital portions each covered by dermal bones. The function of the joint is presumably to increase the gape of the mouth rapidly during opening phases. (Forey 1997). monarch-merged.owl endoskeletal intracranial joint WD uberon owl:Class UBERON:4300203 biolink:NamedThing tectum orbitale The dorsal portion of the endocranium that covers the orbital region. Hanken and Hall (1993). monarch-merged.owl WD uberon owl:Class UBERON:4300286 biolink:NamedThing second preethmoid element Endochondral skeletal element found between the preethmoid and maxilla. monarch-merged.owl http://orcid.org/0000-0003-3162-7490 uberon owl:Class UBERON:4400001 biolink:NamedThing ceratotrichium Elastoidin fin ray that is thickened, generally unbranched and found in the fins of Chondrichthyes. monarch-merged.owl uberon owl:Class UBERON:6000097 biolink:NamedThing insect cephalic furrow monarch-merged.owl FBbt:00000097 uberon owl:Class UBERON:6000112 biolink:NamedThing insect dorsal ectoderm monarch-merged.owl dorEc|AdorEc FBbt:00000112 uberon owl:Class UBERON:6000119 biolink:NamedThing insect anterior ectoderm The region of the ectoderm anterior to the cephalic furrow. monarch-merged.owl FBbt:00000119 uberon owl:Class UBERON:6000130 biolink:NamedThing insect visceral mesoderm monarch-merged.owl FBbt:00000130 uberon owl:Class UBERON:6001057 biolink:NamedThing insect neurogenic region monarch-merged.owl FBbt:00001057 uberon owl:Class UBERON:6001649 biolink:NamedThing insect imaginal disc primordium Population of contiguous, morphologically distinct cells that will form an imaginal disc. monarch-merged.owl imaginal disc specific anlage FBbt:00001649 uberon owl:Class UBERON:6001760 biolink:NamedThing insect embryonic/larval imaginal precursor Imaginal precursor that is part of the embryo/larva. monarch-merged.owl larval imaginal precursor FBbt:00001760 uberon owl:Class UBERON:6002642 biolink:NamedThing insect embryonic/larval ocular segment sensillum Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731). monarch-merged.owl larval ocular segment sensillum FBbt:00002642 uberon owl:Class UBERON:6004823 biolink:NamedThing insect analia monarch-merged.owl FBbt:00004823 uberon owl:Class UBERON:6005378 biolink:NamedThing insect wing margin The border or edge of the wing. It separates the dorsal and ventral compartments. monarch-merged.owl margin FBbt:00005378 uberon owl:Class UBERON:6005434 biolink:NamedThing insect visual anlage monarch-merged.owl A VisSys|AVis FBbt:00005434 uberon owl:Class UBERON:6005439 biolink:NamedThing insect clypeo-labral anlage . monarch-merged.owl clypeo-labral specific anlage|A Cly FBbt:00005439 uberon owl:Class UBERON:6005467 biolink:NamedThing insect lymph gland primordium . monarch-merged.owl lymph gland specific anlage FBbt:00005467 uberon owl:Class UBERON:6005514 biolink:NamedThing insect adult clypeo-labral primordium monarch-merged.owl A AdCly FBbt:00005514 uberon owl:Class UBERON:6005558 biolink:NamedThing insect ventral ectoderm . monarch-merged.owl venEc|P2 VenEc FBbt:00005558 uberon owl:Class UBERON:6006011 biolink:NamedThing insect pharate adult The developing adult after pupal-adult apolysis, i.e. from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. monarch-merged.owl FBbt:00006011 uberon owl:Class UBERON:6007045 biolink:NamedThing insect trunk ectoderm The region of the ectoderm posterior to the cephalic furrow. monarch-merged.owl FBbt:00007045 uberon owl:Class UBERON:6007248 biolink:NamedThing insect chorionic specialization Specialized structure of the chorion of the egg. monarch-merged.owl FBbt:00007248 uberon owl:Class UBERON:6016022 biolink:NamedThing insect abdominal histoblast primordium . monarch-merged.owl abdominal histoblast specific anlage FBbt:00016022 uberon owl:Class UBERON:6100153 biolink:NamedThing insect sensilla row A row of sensilla. monarch-merged.owl FBbt:00100153 uberon owl:Class UBERON:7500033 biolink:NamedThing distal-most point of medial condyle of femur The distal-most point of the medial condyle of a femur. monarch-merged.owl https://orcid.org/0000-0003-2699-3066 uberon owl:Class UBERON:7500034 biolink:NamedThing distal-most point of trochlea of humerus The distal-most point of the trochlea of a humerus. monarch-merged.owl https://orcid.org/0000-0003-2699-3066 uberon owl:Class UBERON:7500039 biolink:NamedThing posterior of pes The posterior-most point of a foot. monarch-merged.owl https://orcid.org/0000-0003-2699-3066 uberon owl:Class UBERON:7500046 biolink:NamedThing proximal-most point of head of femur The proximal-most point of the head of a femur. monarch-merged.owl https://orcid.org/0000-0003-2699-3066 uberon owl:Class UBERON:7500047 biolink:NamedThing proximal-most point of head of humerus The proximal-most point of the head of a humerus. monarch-merged.owl https://orcid.org/0000-0003-2699-3066 uberon owl:Class UBERON:7500048 biolink:NamedThing proximal-most point of ventral tubercle of humerus The proximal-most point of the ventral tubercle of a humerus. monarch-merged.owl https://orcid.org/0000-0003-2699-3066 uberon owl:Class UBERON:7500049 biolink:NamedThing proximal-most point of greater trochanter of femur The proximal-most point of the greater trochanter of a femur. monarch-merged.owl https://orcid.org/0000-0003-2699-3066 uberon owl:Class UBERON:7500061 biolink:NamedThing trochlear ridge of humerus The ridge of the trochlea on a humerus lies in the middle of the distal end of a humerus on the lateral side of the trochlea and the medial side of the capitulum (capitellum). monarch-merged.owl 2021-05-27 23:57:42+00:00 uberon owl:Class UBERON:7500064 biolink:NamedThing trochlear groove of talus The furrow between the lateral and medial condyles of the trochlea of talus. monarch-merged.owl trochlear groove of astragalus 2021-05-28 00:57:49+00:00 uberon owl:Class UBERON:7500068 biolink:NamedThing ridge of medial condyle of talus The crest of the medial condyle of a talus. monarch-merged.owl ridge of medial condyle of astragalus 2021-05-28 01:03:10+00:00 uberon owl:Class UBERON:7500069 biolink:NamedThing ridge of lateral condyle of talus The crest of the lateral condyle of a talus. monarch-merged.owl ridge of lateral condyle of astragalus 2021-05-28 01:03:51+00:00 uberon owl:Class UBERON:7500070 biolink:NamedThing sulcus tali A depression that runs between the two facets of a talus that interact with a calcaneum. monarch-merged.owl sulcus for flexor hallucis longus tendon 2021-05-28 01:09:52+00:00 uberon owl:Class UBERON:7500077 biolink:NamedThing trochlea of femur A trochlea on the distal end of a femur that interacts with the patella. monarch-merged.owl patellar surface of femur 2021-06-02 00:19:07+00:00 uberon owl:Class UBERON:7500080 biolink:NamedThing articular surface for carpals The articular surface on the distal end of a radius that interacts with carpals. monarch-merged.owl distal articular surface of radius 2021-06-03 00:23:08+00:00 uberon owl:Class UBERON:7500081 biolink:NamedThing articular surface for the tibia on the talus Contact surface between the tibia and the talus located on the talus. monarch-merged.owl 2021-07-27 17:04:35+00:00 uberon owl:Class UBERON:7500089 biolink:NamedThing posterior articular facet for talus of calcaneus Posterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone. monarch-merged.owl proximal facet of calcaneum 2021-08-04 00:14:22+00:00 uberon owl:Class UBERON:7500091 biolink:NamedThing middle articular facet for talus of calcaneus Middle facet on the proximal surface of the calcaneus for the articulation of the talus bone. monarch-merged.owl 2021-08-04 00:19:10+00:00 uberon owl:Class UBERON:7500092 biolink:NamedThing anterior articular facet for talus of calcaneus Anterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone. monarch-merged.owl distal facet of calcaneum 2021-08-04 00:21:34+00:00 uberon owl:Class UBERON:8000008 biolink:NamedThing cementocyte lacuna The small cavity within the cellular cementum that is occupied by a cementocyte cell body. monarch-merged.owl http://orcid.org/0000-0001-5208-3432 uberon owl:Class UBERON:8410013 biolink:NamedThing afferent lymphatic vessel valve A valve in an afferent lymphatic vessel. It manages the flow of lymphatic fluid into the lymph node carrying immune cells and is essential for the correct flow of fluid through the lymphatic system. monarch-merged.owl valve of afferent lymphatic vessel http://orcid.org/0000-0002-2825-0621 uberon owl:Class UBERON:8410024 biolink:NamedThing intestinal junction An anatomical junction between two parts of the intestine. monarch-merged.owl junction of intestine http://orcid.org/0000-0002-2825-0621 uberon owl:Class UBERON:8410032 biolink:NamedThing trabecular sinus of lymph node The trabecular sinus is the lymph-filled space outside the trabeculae between lobules of the lymph node. This is a continuation of the subcapsular sinus which receives the afferent vessels and is present beneath the capsule. This space is traversed by both reticular fibers and cells in the lymph. monarch-merged.owl lymph node trabecular sinus http://orcid.org/0000-0002-2825-0621 uberon owl:Class OBO:WBbt_0006796 biolink:NamedThing germ cell a cell, of either sex, directly concerned in the production of a new organism. monarch-merged.owl germ cell (worm) worm_anatomy owl:Class OBO:CARO_0000011 biolink:NamedThing connected anatomical system monarch-merged.owl owl:Class OBO:CARO_0000032 biolink:NamedThing organism subdivision Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument. monarch-merged.owl Old definition: Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. owl:Class OBO:CARO_0000012 biolink:NamedThing multicellular organism Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell. monarch-merged.owl multicellular organism MH: Can't define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history.|MH: Can't define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history. MH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities.|MH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities. Melissa Haendel 9/18/11 owl:Class OBO:CARO_0010004 biolink:NamedThing organism An individual member of a clade.|An individual member of a clade of cellular organisms. monarch-merged.owl organism A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. So, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms.|A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. For example, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms. mah 7.16.2011 mah owl:Class NCBITaxon:131567 biolink:NamedThing cellular organisms monarch-merged.owl biota GC_ID:1 ncbi_taxonomy owl:Class NCBITaxon:2 biolink:NamedThing Bacteria monarch-merged.owl Monera|prokaryotes|eubacteria|Procaryotae|Prokaryotae|bacteria|not Bacteria Haeckel 1894|Prokaryota|prokaryote PMID:12054223|PMID:10425795|PMID:2112744|PMID:10425796|PMID:7520741|PMID:11321113|PMID:10939673|PMID:10490293|PMID:8123559|PMID:10843050|PMID:11411719|PMID:11542017|PMID:11760965|PMID:10939677|PMID:11542087|PMID:10425797|PMID:8590690|PMID:11321083|PMID:11211268|PMID:270744|PMID:9103655|PMID:10939651|PMID:9336922|GC_ID:11|PMID:11540071|PMID:8186100 ncbi_taxonomy owl:Class NCBITaxon:2759 biolink:NamedThing Eukaryota monarch-merged.owl euk-|Eukaryotae|eukaryotes|Eucarya|eucaryotes|Eukarya|Eucaryotae PMID:23020233|PMID:30257078|GC_ID:1 ncbi_taxonomy owl:Class PCO:0000073 biolink:NamedThing alga excluding Cyanobacteria An organism that is part of a polyphyletic group of mostly photosynthetic Eukaryotes encompassing green plants excluding Embriophyta (land plants). Included organisms range from unicellular microalgae, such as Chlorella and diatoms to multicellular forms such as giant kelp. monarch-merged.owl alga|algae|seaweed owl:Class NCBITaxon:2157 biolink:NamedThing Archaea monarch-merged.owl prokaryotes|Metabacteria|Mendosicutes|Procaryotae|Prokaryota|Prokaryotae|Monera|Archaebacteria|prokaryote|archaea PMID:11321113|PMID:11542064|PMID:8123559|PMID:10939673|PMID:10490293|PMID:25527841|PMID:10843050|PMID:11411719|PMID:11760965|PMID:10939677|PMID:10425797|PMID:8590690|PMID:11541975|PMID:11321083|PMID:11211268|PMID:11542149|PMID:270744|PMID:9103655|PMID:10939651|PMID:9336922|GC_ID:11|PMID:11540071|PMID:12054223|PMID:10425795|PMID:2112744|PMID:10425796 ncbi_taxonomy owl:Class NCBITaxon:Union_0000021 biolink:NamedThing Viridiplantae or Bacteria or Euglenozoa or Archaea monarch-merged.owl Jennifer I Deegan 2009-08-10T10:46:43Z owl:Class NCBITaxon:Union_0000023 biolink:NamedThing Fungi or Bacteria or Archaea monarch-merged.owl owl:Class NCBITaxon:Union_0000025 biolink:NamedThing Archaea or Eukaryota monarch-merged.owl archaea-eukaryota owl:Class OBO:CARO_0000013 biolink:NamedThing cell An anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. monarch-merged.owl GO:0005623|CL:0000000 deprecate and replace with CL or GO term? owl:Class CL:0000003 biolink:NamedThing native cell A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment). monarch-merged.owl cell in vivo CARO:0000013 To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12). cell owl:Class CL:0000039 biolink:NamedThing germ line cell A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. monarch-merged.owl Originally this term had some plant germ line cell children. cell owl:Class CL:0000055 biolink:NamedThing non-terminally differentiated cell A precursor cell with a limited number of potential fates. monarch-merged.owl blast cell FMA:84782|BTO:0000125 define using PATO mulit-potent or oligopotent? cell owl:Class CL:0000064 biolink:NamedThing ciliated cell A cell that has a filiform extrusion of the cell surface. monarch-merged.owl VHOG:0001532|XAO:0000031 cell owl:Class CL:0000080 biolink:NamedThing circulating cell A cell which moves among different tissues of the body, via blood, lymph, or other medium. monarch-merged.owl cell owl:Class CL:0000151 biolink:NamedThing secretory cell A cell that specializes in controlled release of one or more substances. monarch-merged.owl BTO:0003659|FMA:86916 cell owl:Class CL:0000183 biolink:NamedThing contractile cell A cell whose primary function is to shorten. monarch-merged.owl cell owl:Class CL:0000197 biolink:NamedThing sensory receptor cell A cell that is capable of detection of a stimulus involved in sensory perception. monarch-merged.owl receptor cell cell owl:Class CL:0000211 biolink:NamedThing electrically active cell A cell whose function is determined by the generation or the reception of an electric signal. monarch-merged.owl cell owl:Class CL:0000212 biolink:NamedThing absorptive cell A cell that takes up and metabolizes substances. monarch-merged.owl cell owl:Class CL:0000215 biolink:NamedThing barrier cell A cell whose primary function is to prevent the transport of stuff across compartments. monarch-merged.owl cell owl:Class CL:0000219 biolink:NamedThing motile cell A cell that moves by its own activities. monarch-merged.owl cell owl:Class CL:0000225 biolink:NamedThing anucleate cell A cell that lacks a nucleus. monarch-merged.owl non-nucleated cell FMA:68647 cell owl:Class CL:0000226 biolink:NamedThing single nucleate cell A cell with a single nucleus. monarch-merged.owl cell owl:Class CL:0000228 biolink:NamedThing multinucleate cell A cell with more than one nucleus. monarch-merged.owl syncytial cell|syncitium|syncytium WBbt:0008074|AEO:0000203 cell owl:Class CL:0000255 biolink:NamedThing eukaryotic cell monarch-merged.owl cell owl:Class CL:0000293 biolink:NamedThing structural cell A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism. monarch-merged.owl cell owl:Class CL:0000325 biolink:NamedThing stuff accumulating cell A cell that is specialised to accumulate a particular substance(s). monarch-merged.owl cell owl:Class CL:0000329 biolink:NamedThing oxygen accumulating cell monarch-merged.owl cell owl:Class CL:0000333 biolink:NamedThing migratory neural crest cell A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body. monarch-merged.owl FMA:86667 cell owl:Class CL:0000412 biolink:NamedThing polyploid cell A cell whose nucleus, or nuclei, each contain more than two haploid genomes. monarch-merged.owl cell owl:Class CL:0000413 biolink:NamedThing haploid cell A cell whose nucleus contains a single haploid genome. monarch-merged.owl cell owl:Class CL:0000415 biolink:NamedThing diploid cell A cell whose nucleus has two haploid genomes. monarch-merged.owl FMA:72300 cell owl:Class CL:0000422 biolink:NamedThing mitogenic signaling cell A cell whose primary function is to cause growth by stimulating cell division in its immediate cellular environment. monarch-merged.owl cell owl:Class CL:0000445 biolink:NamedThing apoptosis fated cell monarch-merged.owl cell owl:Class CL:0000473 biolink:NamedThing defensive cell A cell whose primary function is to protect the organism. monarch-merged.owl cell owl:Class CL:0000520 biolink:NamedThing prokaryotic cell monarch-merged.owl cell owl:Class CL:0000627 biolink:NamedThing transporting cell A cell involved in transporting nutrients, minerals, water, gases and other chemicals between cells for a variety of purposes including conveying nutrition to other tissues, removing waste products from the tissues, conveying gases for respiration, distributing heat and repelling invasion of foreign substances. monarch-merged.owl cell owl:Class CL:0000628 biolink:NamedThing photosynthetic cell A cell that can perform photosynthesis, in which carbohydrates are synthesized from carbon dioxide and water, using light as the energy source. monarch-merged.owl see PMID:21177950, The making of a photosynthetic animal. cell owl:Class CL:0000630 biolink:NamedThing supportive cell A cell whose primary function is to support other cell types. monarch-merged.owl BTO:0002315 cell owl:Class CL:0000663 biolink:NamedThing valve cell monarch-merged.owl cell owl:Class CL:0000725 biolink:NamedThing nitrogen fixing cell monarch-merged.owl cell owl:Class CL:0000891 biolink:NamedThing foam cell A type of cell containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions. monarch-merged.owl BTO:0003872|FMA:83586 cell owl:Class CL:0002242 biolink:NamedThing nucleate cell A cell containing at least one nucleus. monarch-merged.owl FMA:67513 tmeehan 2010-09-07T03:32:33Z cell owl:Class CL:0002371 biolink:NamedThing somatic cell A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). monarch-merged.owl BTO:0001268|WBbt:0008378|FMA:72300 tmeehan 2010-09-24T09:44:42Z cell owl:Class CL:0007001 biolink:NamedThing skeletogenic cell Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). monarch-merged.owl scleroblast Needs logical definition. Should be capable_of skeletal system morphogenesis? or skeletal tissue development? needs to be added to GO. NOTES:a cell type of the early embryo (see also: mesenchymal cells) that will give rise to mineralized connective tissue. Scleroblasts can differentiate into osteoblasts (bone-forming cells), chondroblasts (cartilage-forming cells), odontoblasts (dentin-forming cells), ameloblasts (enamel-forming cells). The mesenchymal cells developing into osteoblasts and chondroblasts are derived from the mesoderm. Those developing into odontoblasts are neural crest cells. Those developing into ameloblasts are derived from the ectoderm. (http://www.copewithcytokines.de/cope.cgi?key=scleroblasts) haendel 2012-06-15T02:51:27Z cell owl:Class CL:0007005 biolink:NamedThing notochordal cell Cell that is part of the notochord. monarch-merged.owl NOTE: TO DO, notochord development still needs work. haendel 2012-06-27T08:47:31Z cell owl:Class CL:0007023 biolink:NamedThing flask cell Epidermal cell rich in mitochondria. In amphibians, appears during metamorphosis. monarch-merged.owl haendel owl:Class CL:0009010 biolink:NamedThing transit amplifying cell Transit-amplifying cells (TACs) are an undifferentiated population in transition between stem cells and differentiated cells. monarch-merged.owl TACs|TAC|transient amplifying cell|transit-amplifying cell http://orcid.org/0000-0002-2825-0621 owl:Class CL:0010005 biolink:NamedThing atrioventricular bundle cell A specialized cardiomyocyte that transmit signals from the AV node to the cardiac Purkinje fibers. monarch-merged.owl AV bundle cell owl:Class CL:0010007 biolink:NamedThing His-Purkinje system cell monarch-merged.owl owl:Class CL:0010017 biolink:NamedThing zygote A zygote in a plant or an animal. monarch-merged.owl owl:Class CL:0011115 biolink:NamedThing precursor cell A cell that, by division or terminal differentiation, can give rise to other cell types. monarch-merged.owl Work is needed on GO 'cell differentiation' before it is clear whether the equivalent class definition 'native cell' that capable_of some 'cell differentiation' works. Also, may want to consider merging this with non-terminally differentiated cell. owl:Class CL:2000004 biolink:NamedThing pituitary gland cell Any cell that is part of a pituitary gland. monarch-merged.owl TermGenie 2014-03-26T22:14:56Z cell owl:Class CL:2000020 biolink:NamedThing inner cell mass cell Any native cell that is part of a inner cell mass. monarch-merged.owl TermGenie 2014-06-24T23:16:53Z cell owl:Class CL:2000021 biolink:NamedThing sebaceous gland cell Any native cell that is part of a sebaceous gland. monarch-merged.owl TermGenie 2014-06-24T23:17:00Z cell owl:Class CL:2000022 biolink:NamedThing cardiac septum cell Any native cell that is part of a cardiac septum. monarch-merged.owl TermGenie 2014-06-24T23:17:07Z cell owl:Class CL:2000030 biolink:NamedThing hypothalamus cell Any native cell that is part of a hypothalamus. monarch-merged.owl TermGenie 2014-06-25T01:17:50Z cell owl:Class GO:0005634 biolink:NamedThing nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. monarch-merged.owl horsetail nucleus|cell nucleus NIF_Subcellular:sao1702920020|Wikipedia:Cell_nucleus cellular_component owl:Class GO:0042995 biolink:NamedThing cell projection A prolongation or process extending from a cell, e.g. a flagellum or axon. monarch-merged.owl cell process|cellular projection|cellular process cellular_component owl:Class OBO:CARO_0001001 biolink:NamedThing neuron projection bundle monarch-merged.owl owl:Class PCO:0000000 biolink:NamedThing collection of organisms A material entity that consists of two or more organisms, viruses, or viroids.|A material entity that consists of two or more organisms, viruses, or viroids. monarch-merged.owl group of organism|organism collection A group of organisms of the same taxonomic group grouped together in virtue of their sharing some commonality (either an inherent attribute or an externally assigned role).|May be of the same or different species. Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family. owl:Class PCO:0000024 biolink:NamedThing household An organismal entity that consists of one or more people who live in the same dwelling and also share at meals or living accommodation, and may consist of a single family or some other grouping of people. monarch-merged.owl WEB: http://en.wikipedia.org/wiki/Household owl:Class OBO:ECOCORE_00000045 biolink:NamedThing symbiotroph heterotroph that acquires nutrition from a symbiont monarch-merged.owl http://orcid.org/0000-0002-2908-3327 owl:Class NCBITaxon:12884 biolink:NamedThing Viroids monarch-merged.owl owl:Class PCO:0000049 biolink:NamedThing microbe monarch-merged.owl microbial organism owl:Class CHEBI:100 biolink:NamedThing (-)-medicarpin monarch-merged.owl owl:Class CHEBI:16114 biolink:NamedThing medicarpin monarch-merged.owl owl:Class CHEBI:6714 biolink:NamedThing (+)-medicarpin monarch-merged.owl owl:Class CHEBI:10003 biolink:NamedThing ribostamycin sulfate monarch-merged.owl owl:Class CHEBI:38012 biolink:NamedThing aminoglycoside sulfate salt monarch-merged.owl owl:Class CHEBI:47779 biolink:NamedThing aminoglycoside monarch-merged.owl owl:Class CHEBI:22507 biolink:NamedThing aminoglycoside antibiotic monarch-merged.owl owl:Class CHEBI:28748 biolink:NamedThing doxorubicin monarch-merged.owl owl:Class CHEBI:31047 biolink:NamedThing 10-carboxy-13-deoxycarminomycin monarch-merged.owl owl:Class CHEBI:32096 biolink:NamedThing rhodomycin D monarch-merged.owl owl:Class CHEBI:47898 biolink:NamedThing 4'-epidoxorubicin monarch-merged.owl owl:Class CHEBI:53634 biolink:NamedThing neomycin C monarch-merged.owl owl:Class CHEBI:65008 biolink:NamedThing 6'-oxoparomamine monarch-merged.owl owl:Class CHEBI:65018 biolink:NamedThing 2'-N-acetylparomamine monarch-merged.owl owl:Class CHEBI:65043 biolink:NamedThing 6'''-hydroxyneomycin C monarch-merged.owl owl:Class CHEBI:65044 biolink:NamedThing 2'''-acetyl-6'''-hydroxyneomycin C monarch-merged.owl owl:Class CHEBI:74351 biolink:NamedThing aclacinomycin T monarch-merged.owl owl:Class CHEBI:74619 biolink:NamedThing aclacinomycin A monarch-merged.owl owl:Class CHEBI:74620 biolink:NamedThing 15-demethylaclacinomycin T monarch-merged.owl owl:Class CHEBI:7489 biolink:NamedThing neamine monarch-merged.owl owl:Class CHEBI:7508 biolink:NamedThing framycetin monarch-merged.owl owl:Class CHEBI:75091 biolink:NamedThing aclacinomycin N monarch-merged.owl owl:Class CHEBI:75093 biolink:NamedThing aclacinomycin Y monarch-merged.owl owl:Class CHEBI:77179 biolink:NamedThing 4-O-methylrhodomycin D monarch-merged.owl owl:Class CHEBI:77195 biolink:NamedThing 10-carboxy-13-deoxydaunorubicin monarch-merged.owl owl:Class CHEBI:79176 biolink:NamedThing aclacinomycin S monarch-merged.owl owl:Class CHEBI:79297 biolink:NamedThing 2-deoxy-alpha-L-fucosylaclacinomycin S monarch-merged.owl owl:Class CHEBI:7933 biolink:NamedThing paromamine monarch-merged.owl owl:Class CHEBI:85897 biolink:NamedThing 11-deoxy-beta-rhodomycin monarch-merged.owl owl:Class CHEBI:100147 biolink:NamedThing nalidixic acid monarch-merged.owl owl:Class CHEBI:25384 biolink:NamedThing monocarboxylic acid An oxoacid containing a single carboxy group. monarch-merged.owl monocarboxylic acids chebi_ontology owl:Class CHEBI:127343 biolink:NamedThing 17-(4-hydroxyphenyl)heptadecanoic acid monarch-merged.owl owl:Class CHEBI:127547 biolink:NamedThing 19-(4-hydroxyphenyl)nonadecanoic acid monarch-merged.owl owl:Class CHEBI:131582 biolink:NamedThing 8,12-diethyl-3-vinylbacteriochlorophyllide d monarch-merged.owl owl:Class CHEBI:131587 biolink:NamedThing 12-ethyl-8-propyl-3-vinylbacteriochlorophyllide d monarch-merged.owl owl:Class CHEBI:131588 biolink:NamedThing 12-ethyl-8-isobutyl-3-vinylbacteriochlorophyllide d monarch-merged.owl owl:Class CHEBI:131759 biolink:NamedThing CMP-5'-phosphonoformic acid monarch-merged.owl owl:Class CHEBI:132958 biolink:NamedThing N-acetylmethionine monarch-merged.owl owl:Class CHEBI:133221 biolink:NamedThing 2-oxindole-3-acetic acid monarch-merged.owl owl:Class CHEBI:133351 biolink:NamedThing N-carbamoylglycine monarch-merged.owl owl:Class CHEBI:134018 biolink:NamedThing N-acyl-gamma-aminobutyric acid monarch-merged.owl owl:Class CHEBI:134582 biolink:NamedThing (4S)-4,16-dihydroxyretinoic acid monarch-merged.owl owl:Class CHEBI:136858 biolink:NamedThing beta-D-Delta(4)-GlcpA-(1->4)-beta-D-Glcp-(1->4)-alpha-L-Rhap-(1->3)-D-Glcp monarch-merged.owl owl:Class CHEBI:136996 biolink:NamedThing 9-[(9Z)-octadecenoyloxy]octadecanoic acid monarch-merged.owl owl:Class CHEBI:137082 biolink:NamedThing 12-[(9Z)-octadecenoyloxy]octadecanoic acid monarch-merged.owl owl:Class CHEBI:137083 biolink:NamedThing 13-[(9Z)-octadecenoyloxy]octadecanoic acid monarch-merged.owl owl:Class CHEBI:137084 biolink:NamedThing 9-[(9Z)-hexadecenoyloxy]octadecanoic acid monarch-merged.owl owl:Class CHEBI:137085 biolink:NamedThing 12-[(9Z)-hexadecenoyloxy]octadecanoic acid monarch-merged.owl owl:Class CHEBI:137086 biolink:NamedThing 13-[(9Z)-hexadecenoyloxy]octadecanoic acid monarch-merged.owl owl:Class CHEBI:137089 biolink:NamedThing 12-(octadecanoyloxy)octadecanoic acid monarch-merged.owl owl:Class CHEBI:137091 biolink:NamedThing 13-(octadecanoyloxy)octadecanoic acid monarch-merged.owl owl:Class CHEBI:137097 biolink:NamedThing 9-(octadecanoyloxy)octadecanoic acid monarch-merged.owl owl:Class CHEBI:137102 biolink:NamedThing 5-[(9Z)-hexadecenoyloxy]octadecanoic acid monarch-merged.owl owl:Class CHEBI:137106 biolink:NamedThing 5-[(9Z)-octadecenoyloxy]octadecanoic acid monarch-merged.owl owl:Class CHEBI:138366 biolink:NamedThing bile acids Any member of a group of hydroxy steroids occuring in bile, where they are present as the sodium salts of their amides with glycine or taurine. In mammals bile acids almost invariably have 5beta-configuration, while in lower vertebrates, some bile acids, known as allo-bile acids, have 5alpha-configuration. monarch-merged.owl chebi_ontology owl:Class CHEBI:138400 biolink:NamedThing 4-sulfanylbutanoic acid monarch-merged.owl owl:Class CHEBI:139215 biolink:NamedThing cochalic acid monarch-merged.owl owl:Class CHEBI:141249 biolink:NamedThing N-carbamoyl-D-phenylglycine monarch-merged.owl owl:Class CHEBI:1427 biolink:NamedThing 3-(3-hydroxyphenyl)propanoic acid monarch-merged.owl owl:Class CHEBI:1461 biolink:NamedThing 3-butynoic acid monarch-merged.owl owl:Class CHEBI:149591 biolink:NamedThing (dihydroxyphenyl)propanoic acid monarch-merged.owl owl:Class CHEBI:15366 biolink:NamedThing acetic acid A simple monocarboxylic acid containing two carbons. monarch-merged.owl Acetic acid|acide acetique|HOAc|E 260|MeCO2H|Essigsaeure|E-260|INS No. 260|ethoic acid|MeCOOH|Methanecarboxylic acid|CH3-COOH|Ethylic acid|CH3CO2H|acetic acid|Ethanoic acid|AcOH|E260|ACETIC ACID 0 C2H4O2 InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4) QTBSBXVTEAMEQO-UHFFFAOYSA-N 60.05200 60.02113 CC(O)=O PMID:17190852|PMID:22153255|PPDB:1333|Wikipedia:Acetic_acid|LIPID_MAPS_instance:LMFA01010002|PMID:22173419|Beilstein:506007|KEGG:C00033|PMID:19469536|KEGG:D00010|PDBeChem:ACY|Drug_Central:4211|PDBeChem:ACT|Gmelin:1380|MetaCyc:ACET|CAS:64-19-7|PMID:12005138|HMDB:HMDB0000042|PMID:16774200|PMID:15107950|PMID:16630552|PMID:19416101|Reaxys:506007|KNApSAcK:C00001176 CHEBI:22169|CHEBI:40486|CHEBI:2387 chebi_ontology owl:Class CHEBI:15423 biolink:NamedThing clavaminic acid monarch-merged.owl owl:Class CHEBI:15424 biolink:NamedThing dihydroclavaminic acid monarch-merged.owl owl:Class CHEBI:15425 biolink:NamedThing proclavaminic acid monarch-merged.owl owl:Class CHEBI:15426 biolink:NamedThing deoxyamidinoproclavaminic acid monarch-merged.owl owl:Class CHEBI:15553 biolink:NamedThing prostaglandin F2alpha A prostaglandins Falpha that is prosta-5,13-dien-1-oic acid substituted by hydroxy groups at positions 9, 11 and 15. It is a naturally occurring prostaglandin used to induce labor. monarch-merged.owl 7-[3,5-Dihydroxy-2-(3-hydroxy-1-octenyl)cyclopentyl]-5-heptenoic acid|Enzaprost F|l-PGF2-alpha|Panacelan|Prostaglandin F2a|dinoprostum|Prostaglandin F2alpha|PGF2a|Prostin F 2 alpha|PGF2alpha|(+)-Prostaglandin F2a|Cyclosin|Dinoprost|Amoglandin|(5Z,13E,15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dien-1-oic acid|(5Z,13E)-(15S)-9alpha,11alpha,15-Trihydroxyprosta-5,13-dienoate|dinoprost|dinoprosta|l-Prostaglandin F2-alpha|9,11,15-Trihydroxy-(5Z,9a,11a,13E,15S)-prosta-5,13-dien-1-oic acid|Protamodin|9a,11a-PGF2|Enzaprost|U 14583 0 C20H34O5 InChI=1S/C20H34O5/c1-2-3-6-9-15(21)12-13-17-16(18(22)14-19(17)23)10-7-4-5-8-11-20(24)25/h4,7,12-13,15-19,21-23H,2-3,5-6,8-11,14H2,1H3,(H,24,25)/b7-4-,13-12+/t15-,16+,17+,18-,19+/m0/s1 PXGPLTODNUVGFL-YNNPMVKQSA-N 354.48100 354.24062 CCCCC[C@H](O)\C=C\[C@H]1[C@H](O)C[C@H](O)[C@@H]1C\C=C/CCCC(O)=O Beilstein:2225571|Reaxys:2225571|MetaCyc:5Z13E-15S-9-ALPHA11-ALPHA15-TRIHY|PMID:23807981|LIPID_MAPS_instance:LMFA03010002|CAS:551-11-1|VSDB:1803|Drug_Central:912|HMDB:HMDB0001139|KEGG:C00639|PMID:11438482|Wikipedia:Dinoprost|KEGG:D00081 CHEBI:26327|CHEBI:10913|CHEBI:8516 chebi_ontology owl:Class CHEBI:15732 biolink:NamedThing phosphonoacetic acid monarch-merged.owl owl:Class CHEBI:15957 biolink:NamedThing stipitatic acid monarch-merged.owl owl:Class CHEBI:16104 biolink:NamedThing 3-(2-hydroxyphenyl)propanoic acid monarch-merged.owl owl:Class CHEBI:16277 biolink:NamedThing haloacetic acid A monocarboxylic acid that is acetic acid in which one of the methyl hydrogens has been replaced by a halogen atom. monarch-merged.owl owl:Class CHEBI:16333 biolink:NamedThing 2-arylpropionic acid monarch-merged.owl owl:Class CHEBI:16411 biolink:NamedThing indole-3-acetic acid monarch-merged.owl owl:Class CHEBI:16691 biolink:NamedThing dethiobiotin monarch-merged.owl owl:Class CHEBI:16805 biolink:NamedThing [1-(5-phosphoribosyl)imidazol-4-yl]acetic acid monarch-merged.owl owl:Class CHEBI:168396 biolink:NamedThing mycophenolic acid monarch-merged.owl owl:Class CHEBI:16865 biolink:NamedThing gamma-aminobutyric acid A gamma-amino acid that is butanoic acid with the amino substituent located at C-4. monarch-merged.owl gamma-Aminobutyric acid|piperidic acid|4-aminobutanoic acid|GAMMA-AMINO-BUTANOIC ACID|gamma-amino-n-butyric acid|gamma-Aminobuttersaeure|4-aminobutyric acid|GABA|gamma-aminobutyric acid|omega-aminobutyric acid|piperidinic acid|4-Aminobutanoic acid|gamma-aminobutanoic acid|4Abu|4-Aminobutyric acid 0 C4H9NO2 InChI=1S/C4H9NO2/c5-3-1-2-4(6)7/h1-3,5H2,(H,6,7) BTCSSZJGUNDROE-UHFFFAOYSA-N 103.11980 103.06333 NCCCC(O)=O Reaxys:906818|KNApSAcK:C00001337|KEGG:C00334|CAS:56-12-2|PMID:22770225|LIPID_MAPS_instance:LMFA01100039|BPDB:2298|PMID:10630630|MetaCyc:4-AMINO-BUTYRATE|HMDB:HMDB0000112|Wikipedia:Gamma-Aminobutyric_acid|PDBeChem:ABU|Drug_Central:1262|PMID:21614609|PMID:16276116|Beilstein:906818|Gmelin:49775|DrugBank:DB02530|PMID:10930630|KEGG:D00058 CHEBI:193777|CHEBI:1786|CHEBI:40483|CHEBI:20318 chebi_ontology owl:Class CHEBI:16974 biolink:NamedThing imidazol-4-ylacetic acid monarch-merged.owl owl:Class CHEBI:17133 biolink:NamedThing deoxylimonoic acid monarch-merged.owl owl:Class CHEBI:17226 biolink:NamedThing rosmarinic acid monarch-merged.owl owl:Class CHEBI:17406 biolink:NamedThing 3-(imidazol-5-yl)pyruvic acid monarch-merged.owl owl:Class CHEBI:17445 biolink:NamedThing 3-hydroxyphenylacetic acid monarch-merged.owl owl:Class CHEBI:18053 biolink:NamedThing 1-aminocyclopropanecarboxylic acid monarch-merged.owl owl:Class CHEBI:18101 biolink:NamedThing 4-hydroxyphenylacetic acid A monocarboxylic acid that is acetic acid in which one of the methyl hydrogens is substituted by a 4-hydroxyphenyl group. monarch-merged.owl (4-hydroxyphenyl)acetic acid|4-hydroxybenzeneacetic acid|(p-hydroxyphenyl)acetic acid|4-carboxymethylphenol|4-Hydroxyphenylacetate|4-Hydroxyphenylacetic acid|p-hydroxyphenylacetic acid 0 C8H8O3 InChI=1S/C8H8O3/c9-7-3-1-6(2-4-7)5-8(10)11/h1-4,9H,5H2,(H,10,11) XQXPVVBIMDBYFF-UHFFFAOYSA-N 152.14732 152.04734 OC(=O)Cc1ccc(O)cc1 Reaxys:1448766|PMID:24831010|PMID:977696|CAS:156-38-7|PDBeChem:4HP|PMID:22296160|HMDB:HMDB0000020|PMID:24636068|PMID:21476434|PMID:11339992|PMID:7126379|Wikipedia:4-hydroxyphenylacetic_acid|UM-BBD_compID:c0271|MetaCyc:4-HYDROXYPHENYLACETATE|KEGG:C00642 CHEBI:20419|CHEBI:40091|CHEBI:12014|CHEBI:1874 chebi_ontology owl:Class CHEBI:18306 biolink:NamedThing thiamine(1+) carboxylic acid monarch-merged.owl owl:Class CHEBI:19098 biolink:NamedThing 1-pyrrolinecarboxylic acid monarch-merged.owl owl:Class CHEBI:19929 biolink:NamedThing 3-hydroxy-3-phenylpropionic acid monarch-merged.owl owl:Class CHEBI:19982 biolink:NamedThing 3-chloroacrylic acid monarch-merged.owl owl:Class CHEBI:22301 biolink:NamedThing aldonic acid Any carbohydrate acid formed by oxidising the aldehyde functional group of an aldose to a carboxylic acid functional group. Aldonic acids have the general formula HOCH2[CH(OH)]nC(=O)OH. monarch-merged.owl aldonic acid|aldonic acids chebi_ontology owl:Class CHEBI:23152 biolink:NamedThing chlorophenoxyacetic acid monarch-merged.owl owl:Class CHEBI:23468 biolink:NamedThing cyclohexadienecarboxylic acid monarch-merged.owl owl:Class CHEBI:23483 biolink:NamedThing cyclohexenecarboxylic acid monarch-merged.owl owl:Class CHEBI:23500 biolink:NamedThing cyclopropanecarboxylic acid monarch-merged.owl owl:Class CHEBI:23931 biolink:NamedThing epoxy monocarboxylic acid monarch-merged.owl owl:Class CHEBI:25978 biolink:NamedThing phenylacetic acids Any monocarboxylic acid that is phenylacetic acid or its substituted derivatives. monarch-merged.owl chebi_ontology owl:Class CHEBI:26148 biolink:NamedThing piperidinemonocarboxylic acid Any member of the class of piperidines in which one of the carbons of the piperidine ring is substituted by a carboxy group. monarch-merged.owl piperidinemonocarboxylic acids CHEBI:26150 chebi_ontology owl:Class CHEBI:26420 biolink:NamedThing pyridinemonocarboxylic acid A monocarboxylic acid in which the carboxy group is attached to a pyridine (or substituted pyridine) ring. monarch-merged.owl pyridinemonocarboxylic acids chebi_ontology owl:Class CHEBI:26447 biolink:NamedThing pyrimidinemonocarboxylic acid monarch-merged.owl pyrimidinemonocarboxylic acids chebi_ontology owl:Class CHEBI:26454 biolink:NamedThing pyrrolecarboxylic acid monarch-merged.owl owl:Class CHEBI:26643 biolink:NamedThing aldehydic acid monarch-merged.owl owl:Class CHEBI:27252 biolink:NamedThing uronic acid monarch-merged.owl owl:Class CHEBI:27384 biolink:NamedThing 3-(4-oxo-4,5-dihydro-1H-imidazol-5-yl)propanoic acid monarch-merged.owl owl:Class CHEBI:27480 biolink:NamedThing phenylacetylglycine monarch-merged.owl owl:Class CHEBI:27592 biolink:NamedThing ectoine monarch-merged.owl owl:Class CHEBI:27617 biolink:NamedThing monensin A monarch-merged.owl owl:Class CHEBI:28118 biolink:NamedThing muramic acid monarch-merged.owl owl:Class CHEBI:28297 biolink:NamedThing hydantoin-5-propionic acid monarch-merged.owl owl:Class CHEBI:28506 biolink:NamedThing arsonoacetic acid monarch-merged.owl owl:Class CHEBI:28585 biolink:NamedThing 4-carboxy-4'-sulfoazobenzene monarch-merged.owl owl:Class CHEBI:28609 biolink:NamedThing N-benzoyl-4-methoxyanthranilic acid monarch-merged.owl owl:Class CHEBI:28631 biolink:NamedThing 3-phenylpropionic acid monarch-merged.owl owl:Class CHEBI:28987 biolink:NamedThing abietic acid monarch-merged.owl owl:Class CHEBI:29091 biolink:NamedThing nocardicin E monarch-merged.owl owl:Class CHEBI:29571 biolink:NamedThing dehydroabietic acid monarch-merged.owl owl:Class CHEBI:29669 biolink:NamedThing pyochelin monarch-merged.owl owl:Class CHEBI:30745 biolink:NamedThing phenylacetic acid A monocarboxylic acid that is toluene in which one of the hydrogens of the methyl group has been replaced by a carboxy group. monarch-merged.owl phenylacetic acid|Benzylformic acid|2-PHENYLACETIC ACID|omega-phenylacetic acid|Benzeneacetic acid|PA|Omega-Phenylacetic acid|alpha-toluic acid|2-Phenylethanoic acid|Phenylacetic acid|benzeneacetic acid 0 C8H8O2 InChI=1S/C8H8O2/c9-8(10)6-7-4-2-1-3-5-7/h1-5H,6H2,(H,9,10) WLJVXDMOQOGPHL-UHFFFAOYSA-N 136.14792 136.05243 OC(=O)Cc1ccccc1 PMID:12569987|PMID:17622769|PMID:7716788|Wikipedia:Phenylacetic_acid|PMID:12147706|KNApSAcK:C00000750|PMID:15506622|PMID:15057459|KEGG:C07086|PMID:7544181|PMID:2083978|ECMDB:ECMDB04128|PDBeChem:PAC|Beilstein:1099647|PMID:24631718|PMID:15646820|HMDB:HMDB0000209|Reaxys:1099647|PMID:24587751|MetaCyc:PHENYLACETATE|Drug_Central:4624|CAS:103-82-2|Gmelin:68976|YMDB:YMDB00891 CHEBI:8085|CHEBI:44686|CHEBI:25977 chebi_ontology owl:Class CHEBI:30749 biolink:NamedThing 4-chlorophenylacetic acid monarch-merged.owl owl:Class CHEBI:30751 biolink:NamedThing formic acid The simplest carboxylic acid, containing a single carbon. Occurs naturally in various sources including the venom of bee and ant stings, and is a useful organic synthetic reagent. Principally used as a preservative and antibacterial agent in livestock feed. Induces severe metabolic acidosis and ocular injury in human subjects. monarch-merged.owl FORMIC ACID|formic acid|HCO2H|bilorin|formylic acid|Ameisensaeure|Formic acid|methoic acid|hydrogen carboxylic acid|Acide formique|aminic acid|H-COOH|Methanoic acid|HCOOH 0 CH2O2 InChI=1S/CH2O2/c2-1-3/h1H,(H,2,3) BDAGIHXWWSANSR-UHFFFAOYSA-N 46.02538 46.00548 [H]C(O)=O PMID:22622393|PMID:15811469|Patent:CN101481304|PMID:22483350|Gmelin:1008|MetaCyc:FORMATE|HMDB:HMDB0000142|PMID:16445901|PMID:12591956|Reaxys:1209246|PMID:16230297|KEGG:C00058|PMID:22447125|PMID:22280475|PMID:22606986|KNApSAcK:C00001182|DrugBank:DB01942|PMID:16222862|PMID:22385261|PMID:18397576|Beilstein:1209246|PMID:16465784|PMID:16120414|PMID:22540994|PMID:14637377|LIPID_MAPS_instance:LMFA01010040|BPDB:1749|Wikipedia:Formic_acid|CAS:64-18-6|PMID:22304812|PDBeChem:FMT|PMID:16185830|PMID:3946945|PMID:18034701|PMID:22080171|PMID:22499553|PMID:7361809 CHEBI:5145|CHEBI:24082|CHEBI:42460 chebi_ontology owl:Class CHEBI:30865 biolink:NamedThing dihydroorotic acid monarch-merged.owl owl:Class CHEBI:32963 biolink:NamedThing amidinoproclavaminic acid monarch-merged.owl owl:Class CHEBI:35366 biolink:NamedThing fatty acid Any aliphatic monocarboxylic acid derived from or contained in esterified form in an animal or vegetable fat, oil or wax.|Any aliphatic monocarboxylic acid derived from or contained in esterified form in an animal or vegetable fat, oil or wax. Natural fatty acids commonly have a chain of 4 to 28 carbons (usually unbranched and even-numbered), which may be saturated or unsaturated. By extension, the term is sometimes used to embrace all acyclic aliphatic carboxylic acids. monarch-merged.owl fatty acids|acidos grasos|acide gras|Fatty acid|acides gras|Fettsaeuren|acido graso|Fettsaeure 0 CHO2R 45.01740 44.99765 OC([*])=O PMID:14300208|PMID:14328676|Wikipedia:Fatty_acid|PMID:14287444|KEGG:C00162 CHEBI:13633|CHEBI:4984|CHEBI:24024 chebi_ontology owl:Class CHEBI:35621 biolink:NamedThing alpha-aminobutyric acid An alpha-amino acid that is butyric acid bearing a single amino substituent located at position 2. monarch-merged.owl alpha-aminobutyric acid|AABA|homoalanine|butyrine|2-amino-n-butyric acid|2-aminobutyric acid|Abu|2-aminobutanoic acid|alpha-amino-n-butyric acid 0 C4H9NO2 InChI=1S/C4H9NO2/c1-2-3(5)4(6)7/h3H,2,5H2,1H3,(H,6,7) QWCKQJZIFLGMSD-UHFFFAOYSA-N 103.11980 103.06333 CCC(N)C(O)=O MetaCyc:CPD-3686|PMID:11958629|Wikipedia:Alpha-Aminobutyric_acid|Gmelin:217679|CAS:2835-81-6|PMID:22061039|DrugBank:DB04454|PMID:22770225|PMID:15246869|PMID:22264337|PMID:20551690|Beilstein:635889|Reaxys:635889 chebi_ontology owl:Class CHEBI:35688 biolink:NamedThing benzimidazolecarboxylic acid monarch-merged.owl owl:Class CHEBI:35868 biolink:NamedThing hydroxy monocarboxylic acid Any monocarboxylic acid which also contains a separate (alcoholic or phenolic) hydroxy substituent. monarch-merged.owl hydroxy monocarboxylic acids|hydroxy acid chebi_ontology owl:Class CHEBI:35871 biolink:NamedThing oxo monocarboxylic acid Any monocarboxylic acid having at least one additional oxo functional group. monarch-merged.owl oxo monocarboxylic acids chebi_ontology owl:Class CHEBI:36055 biolink:NamedThing furoic acid monarch-merged.owl owl:Class CHEBI:36096 biolink:NamedThing cyclohexanecarboxylic acid monarch-merged.owl owl:Class CHEBI:36123 biolink:NamedThing cyclitol carboxylic acid monarch-merged.owl owl:Class CHEBI:37081 biolink:NamedThing 3-aminobutanoic acid monarch-merged.owl owl:Class CHEBI:38305 biolink:NamedThing gibberellin monocarboxylic acid monarch-merged.owl owl:Class CHEBI:38336 biolink:NamedThing dithiolanecarboxylic acid monarch-merged.owl owl:Class CHEBI:38667 biolink:NamedThing purinemonocarboxylic acid monarch-merged.owl owl:Class CHEBI:38795 biolink:NamedThing pteroic acids monarch-merged.owl chebi_ontology owl:Class CHEBI:43615 biolink:NamedThing 2H-imidazol-4-ylacetic acid monarch-merged.owl owl:Class CHEBI:44897 biolink:NamedThing phosphoenolpyruvic acid monarch-merged.owl owl:Class CHEBI:46280 biolink:NamedThing beta-D-4-deoxy-Delta(4)-GlcpA-(1->3)-beta-D-GalpNAc monarch-merged.owl owl:Class CHEBI:46634 biolink:NamedThing carbapenemcarboxylic acid monarch-merged.owl owl:Class CHEBI:46701 biolink:NamedThing pyrrolidinemonocarboxylic acid monarch-merged.owl pyrrolidinemonocarboxylic acids chebi_ontology owl:Class CHEBI:46978 biolink:NamedThing thiazinemonocarboxylic acid monarch-merged.owl owl:Class CHEBI:47794 biolink:NamedThing dihydrocamalexic acid monarch-merged.owl owl:Class CHEBI:47870 biolink:NamedThing (methylthio)acetic acid monarch-merged.owl owl:Class CHEBI:48652 biolink:NamedThing 1,3-thiazolemonocarboxylic acid monarch-merged.owl owl:Class CHEBI:48691 biolink:NamedThing 3-(cis-5,6-dihydroxycyclohexa-1,3-dienyl)propanoic acid monarch-merged.owl owl:Class CHEBI:49006 biolink:NamedThing N-acetylcitrulline monarch-merged.owl owl:Class CHEBI:49015 biolink:NamedThing 1-piperideine-6-carboxylic acid A tetrahydropyridine that is 2,3,4,5-tetrahydropyridine having a carboxy group at the 2-position. monarch-merged.owl 2,3,4,5-tetrahydro-2-pyridinecarboxylic acid|2,3,4,5-tetrahydropyridine-2-carboxylic acid|Delta(1)-piperidine-6-carboxylic acid 0 C6H9NO2 InChI=1S/C6H9NO2/c8-6(9)5-3-1-2-4-7-5/h4-5H,1-3H2,(H,8,9) CSDPVAKVEWETFG-UHFFFAOYSA-N 127.14120 127.06333 OC(=O)C1CCCC=N1 PMID:17288446|PMID:7654748|CAS:3038-89-9|HMDB:HMDB0001084|Reaxys:472021 CHEBI:682|CHEBI:865 chebi_ontology owl:Class CHEBI:49101 biolink:NamedThing N-(3,4-dichlorophenyl)malonamic acid monarch-merged.owl owl:Class CHEBI:49432 biolink:NamedThing 5-hydroxyectoine monarch-merged.owl owl:Class CHEBI:49770 biolink:NamedThing methyl red monarch-merged.owl owl:Class CHEBI:5130 biolink:NamedThing flurbiprofen monarch-merged.owl owl:Class CHEBI:51570 biolink:NamedThing biotins Compounds containing a biotin (5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid) skeleton. monarch-merged.owl owl:Class CHEBI:52448 biolink:NamedThing amino monocarboxylic acid monarch-merged.owl owl:Class CHEBI:52564 biolink:NamedThing 2-carboxy-4-methyl-5-[(2-phosphonooxy)ethylidene]-2,5-dihydrothiazole monarch-merged.owl owl:Class CHEBI:545959 biolink:NamedThing homovanillic acid A monocarboxylic acid that is the 3-O-methyl ether of (3,4-dihydroxyphenyl)acetic acid. It is a catecholamine metabolite. monarch-merged.owl 3-Methoxy-4-hydroxyphenylacetate|4-Hydroxy-3-methoxybenzeneacetic acid|2-(4-hydroxy-3-methoxyphenyl)acetic acid|3-Methoxy-4-hydroxyphenylacetic acid|(4-hydroxy-3-methoxyphenyl)acetic acid|HVA|Homovanillic acid|Vanillacetic acid 0 C9H10O4 InChI=1S/C9H10O4/c1-13-8-4-6(5-9(11)12)2-3-7(8)10/h2-4,10H,5H2,1H3,(H,11,12) QRMZSPFSDQBLIX-UHFFFAOYSA-N 182.17330 182.05791 COc1cc(CC(O)=O)ccc1O Reaxys:2213447|KEGG:C05582|PMID:8353435|PMID:24416192|Wikipedia:Homovanillic_acid|PMID:24423636|CAS:306-08-1|KNApSAcK:C00029504|PMID:14688447|PMID:24007816|MetaCyc:CPD-7651|HMDB:HMDB0000118 CHEBI:5758 chebi_ontology owl:Class CHEBI:546274 biolink:NamedThing (4-hydroxy-3-nitrophenyl)acetic acid monarch-merged.owl owl:Class CHEBI:55330 biolink:NamedThing 16-feruloyloxypalmitic acid monarch-merged.owl owl:Class CHEBI:5580 biolink:NamedThing gypsogenin monarch-merged.owl owl:Class CHEBI:59352 biolink:NamedThing chromenemonocarboxylic acid monarch-merged.owl owl:Class CHEBI:59532 biolink:NamedThing F420-0 monarch-merged.owl owl:Class CHEBI:6039 biolink:NamedThing isopimaric acid monarch-merged.owl owl:Class CHEBI:61001 biolink:NamedThing 2-O-(6-phosphono-alpha-D-mannosyl)-D-glyceric acid monarch-merged.owl owl:Class CHEBI:61125 biolink:NamedThing 7-carboxy-7-deazaguanine monarch-merged.owl owl:Class CHEBI:61126 biolink:NamedThing 5,6,7,8-tetrahydropterin-6-carboxylic acid monarch-merged.owl owl:Class CHEBI:61305 biolink:NamedThing germacra-1(10),4,11(13)-trien-12-oic acid monarch-merged.owl owl:Class CHEBI:61345 biolink:NamedThing chrysobactin monarch-merged.owl owl:Class CHEBI:62412 biolink:NamedThing phenazine-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:62460 biolink:NamedThing helvolic acid monarch-merged.owl owl:Class CHEBI:63275 biolink:NamedThing 5-dehydro-4-deoxy-2-O-sulfo-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:63731 biolink:NamedThing 9beta-pimara-7,15-dien-19-oic acid monarch-merged.owl owl:Class CHEBI:63749 biolink:NamedThing (+)-artemisinic acid monarch-merged.owl owl:Class CHEBI:63844 biolink:NamedThing 4-carboxyzymosterol monarch-merged.owl owl:Class CHEBI:64284 biolink:NamedThing 1,4-dihydroxy-6-naphthoic acid monarch-merged.owl owl:Class CHEBI:64398 biolink:NamedThing monodictyphenone monarch-merged.owl owl:Class CHEBI:64450 biolink:NamedThing endocrocin monarch-merged.owl owl:Class CHEBI:64623 biolink:NamedThing saturated monocarboxylic acid monarch-merged.owl owl:Class CHEBI:65585 biolink:NamedThing carnosic acid monarch-merged.owl owl:Class CHEBI:66951 biolink:NamedThing 4-oxo-4-(pyridin-3-yl)butanoic acid monarch-merged.owl owl:Class CHEBI:66955 biolink:NamedThing olivetolic acid monarch-merged.owl owl:Class CHEBI:69404 biolink:NamedThing pestalamide A monarch-merged.owl owl:Class CHEBI:70778 biolink:NamedThing GW 7647 monarch-merged.owl owl:Class CHEBI:70804 biolink:NamedThing imidazol-5-ylacetic acid monarch-merged.owl owl:Class CHEBI:70866 biolink:NamedThing neopentalenolactone D monarch-merged.owl owl:Class CHEBI:71616 biolink:NamedThing (25S)-cholestenoic acid monarch-merged.owl owl:Class CHEBI:73087 biolink:NamedThing dihydrourocanic acid monarch-merged.owl owl:Class CHEBI:73677 biolink:NamedThing (S)-alpha-hydroxyglutaric acid-gamma-lactone monarch-merged.owl owl:Class CHEBI:73956 biolink:NamedThing (S)-2-chloropropanoic acid monarch-merged.owl owl:Class CHEBI:75370 biolink:NamedThing 2-(2,4-dichlorophenoxy)propanoic acid monarch-merged.owl owl:Class CHEBI:7540 biolink:NamedThing neurosporaxanthin monarch-merged.owl owl:Class CHEBI:75615 biolink:NamedThing (8E,10S,12Z,15Z)-10-hydroperoxyoctadeca-8,12,15-trienoic acid monarch-merged.owl owl:Class CHEBI:75704 biolink:NamedThing 2-(4-chloro-2-methylphenoxy)propanoic acid monarch-merged.owl owl:Class CHEBI:76608 biolink:NamedThing 2-iminopropionic acid monarch-merged.owl owl:Class CHEBI:76872 biolink:NamedThing 2-iminobutanoic acid monarch-merged.owl owl:Class CHEBI:78698 biolink:NamedThing dafachronic acids monarch-merged.owl owl:Class CHEBI:79020 biolink:NamedThing alpha,beta-unsaturated monocarboxylic acid A monocarboxylic acid in which the carbon of the carboxy group is directly attached to a C=C or C#C bond. monarch-merged.owl alpha,beta-unsaturated monocarboxylic acids|2,3-unsaturated monocarboxylic acid|2,3-unsaturated monocarboxylic acids chebi_ontology owl:Class CHEBI:79222 biolink:NamedThing 3-sulfinopropionic acid monarch-merged.owl owl:Class CHEBI:8075 biolink:NamedThing phenoxyacetic acid monarch-merged.owl owl:Class CHEBI:81014 biolink:NamedThing 3beta-hydroxycholest-5-en-26-oic acid monarch-merged.owl owl:Class CHEBI:81548 biolink:NamedThing 3-vinylbacteriochlorophyllide d monarch-merged.owl owl:Class CHEBI:86434 biolink:NamedThing (25R)-3beta,4beta-dihydroxycholest-5-en-26-oic acid monarch-merged.owl owl:Class CHEBI:86564 biolink:NamedThing 4-guanidinobutyric acid monarch-merged.owl owl:Class CHEBI:87783 biolink:NamedThing (25R)-3beta-hydroxycholest-5-en-7-one-26-oic acid monarch-merged.owl owl:Class CHEBI:90897 biolink:NamedThing protoviolaceinic acid monarch-merged.owl owl:Class CHEBI:90899 biolink:NamedThing violaceinic acid monarch-merged.owl owl:Class CHEBI:90906 biolink:NamedThing protodeoxyviolaceinic acid monarch-merged.owl owl:Class CHEBI:90909 biolink:NamedThing deoxyviolaceinic acid monarch-merged.owl owl:Class CHEBI:73537 biolink:NamedThing 1,8-naphthyridine derivative monarch-merged.owl owl:Class CHEBI:86324 biolink:NamedThing quinolone antibiotic monarch-merged.owl owl:Class CHEBI:10022 biolink:NamedThing deoxynivalenol monarch-merged.owl owl:Class CHEBI:15734 biolink:NamedThing primary alcohol A primary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it. monarch-merged.owl a primary alcohol|1-Alcohol|primary alcohols|Primary alcohol 0 CH3OR 31.034 31.01839 *C(O)([H])[H] KEGG:C00226 CHEBI:13676|CHEBI:14887|CHEBI:8406|CHEBI:57489|CHEBI:26262 chebi_ontology owl:Class CHEBI:10615 biolink:NamedThing omega-hydroxy fatty acid monarch-merged.owl owl:Class CHEBI:131845 biolink:NamedThing 2-methylpropane-1,2-diol monarch-merged.owl owl:Class CHEBI:133220 biolink:NamedThing tuberonic acid monarch-merged.owl owl:Class CHEBI:134394 biolink:NamedThing primary allylic alcohol An allylic alcohol in which the carbon atom that links the double bond to the hydroxy group is also attached to two hydrogens. monarch-merged.owl primary allylic alcohols 0 C3H3OR3 55.055 55.01839 C(C(=C(*)*)*)(O)([H])[H] chebi_ontology owl:Class CHEBI:134456 biolink:NamedThing 12-oxo-20-hydroxyleukotriene B4 monarch-merged.owl owl:Class CHEBI:137044 biolink:NamedThing N-[(+)-12-hydroxy-7-isojasmonyl]isoleucine monarch-merged.owl owl:Class CHEBI:137370 biolink:NamedThing 20-hydroxyprostaglandin E2 monarch-merged.owl owl:Class CHEBI:137526 biolink:NamedThing 20-hydroxyprostaglandin E1 monarch-merged.owl owl:Class CHEBI:137529 biolink:NamedThing 20-hydroxyprostaglandin A1 monarch-merged.owl owl:Class CHEBI:138088 biolink:NamedThing long chain primary alcohol monarch-merged.owl owl:Class CHEBI:138388 biolink:NamedThing 4-methylpent-3-en-1-ol monarch-merged.owl owl:Class CHEBI:138440 biolink:NamedThing (3R,4R)-3-[(1S)-1-hydroxyalkyl]-4-(hydroxymethyl)oxolan-2-one monarch-merged.owl owl:Class CHEBI:138441 biolink:NamedThing (3R,4R)-3-acyl-4-(hydroxymethyl)oxolan-2-one monarch-merged.owl owl:Class CHEBI:138963 biolink:NamedThing 11,20-dihydroxysugiol monarch-merged.owl owl:Class CHEBI:138965 biolink:NamedThing 11,20-dihydroxyferruginol monarch-merged.owl owl:Class CHEBI:139590 biolink:NamedThing primary alpha-hydroxy ketone An alpha-hydroxy ketone in which the carbonyl group and the hydroxy group are linked by a -CH2 (methylene) group. monarch-merged.owl primary alpha-hydroxy ketones|primary alpha-hydroxyketones|primary alpha-hydroxyketone|primary alpha-hydroxy-ketone|primary alpha-hydroxy-ketones 0 C2H3O2R 59.044 59.01330 *C(C(O)([H])[H])=O chebi_ontology owl:Class CHEBI:140182 biolink:NamedThing hydroxyalbendazole monarch-merged.owl owl:Class CHEBI:140259 biolink:NamedThing sordaricin monarch-merged.owl owl:Class CHEBI:142622 biolink:NamedThing primary fatty alcohol monarch-merged.owl owl:Class CHEBI:142862 biolink:NamedThing andrastin B monarch-merged.owl owl:Class CHEBI:143566 biolink:NamedThing 3beta-hydroxy-4beta-hydroxymethyl-4alpha-methylsteroid monarch-merged.owl owl:Class CHEBI:145715 biolink:NamedThing hex-3-en-1-ol monarch-merged.owl owl:Class CHEBI:145951 biolink:NamedThing 4-hydroxymethylsteroid monarch-merged.owl owl:Class CHEBI:15787 biolink:NamedThing deoxylimonoic acid D-ring-lactone monarch-merged.owl owl:Class CHEBI:15837 biolink:NamedThing isoamylol An primary alcohol that is butan-1-ol in which a hydrogen at position 3 has been replaced by a methyl group. monarch-merged.owl 3-methylbutanol|Iso-amylalkohol|isoamylol|3-methyl-1-butanol|Isoamyl alcohol|3-Methylbutanol|isobutylcarbinol|i-amyl alcohol|3-methylbutan-1-ol|alcool isoamylique|Isopentylalkohol|Isopentyl alcohol|1-HYDROXY-3-METHYLBUTANE|isopentanol|primary isoamyl alcohol|2-methyl-4-butanol|isopentan-1-ol 0 C5H12O InChI=1S/C5H12O/c1-5(2)3-4-6/h5-6H,3-4H2,1-2H3 PHTQWCKDNZKARW-UHFFFAOYSA-N 88.14818 88.08882 CC(C)CCO PMID:23043843|YMDB:YMDB00570|PMID:23698045|Gmelin:49460|KEGG:C07328|PMID:24487533|PMID:24862930|CAS:123-51-3|PMID:24767042|DrugBank:DB02296|Beilstein:1718835|HMDB:HMDB0006007|PMID:24804072|Reaxys:1718835 CHEBI:11855|CHEBI:20125|CHEBI:43359|CHEBI:1597 chebi_ontology owl:Class CHEBI:16000 biolink:NamedThing ethanolamine monarch-merged.owl owl:Class CHEBI:16011 biolink:NamedThing 2-ethylhexan-1-ol monarch-merged.owl owl:Class CHEBI:16060 biolink:NamedThing 10-deoxysarpagine monarch-merged.owl owl:Class CHEBI:16188 biolink:NamedThing octan-1-ol monarch-merged.owl owl:Class CHEBI:16216 biolink:NamedThing 3-(acetamidomethylidene)-2-(hydroxymethyl)succinic acid monarch-merged.owl owl:Class CHEBI:16236 biolink:NamedThing ethanol A primary alcohol that is ethane in which one of the hydrogens is substituted by a hydroxy group. monarch-merged.owl alcohol|Aethanol|hydroxyethane|Methylcarbinol|Ethanol|alcohol etilico|EtOH|ETHANOL|1-hydroxyethane|Aethylalkohol|alcool ethylique|ethanol|[OEtH]|spiritus vini|etanol|C2H5OH|Alkohol|Dehydrated ethanol|[CH2Me(OH)]|Ethyl alcohol 0 C2H6O InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 LFQSCWFLJHTTHZ-UHFFFAOYSA-N 46.06844 46.04186 CCO PMID:17190852|PMID:11728426|PMID:22306018|MolBase:859|PMID:16352430|PMID:15019421|PMID:16084479|PMID:19901811|PMID:11754521|PMID:15900217|PMID:12824058|Reaxys:1718733|PMID:22331491|PMID:17043811|PMID:11090978|PMID:19280886|PMID:18249266|PMID:15464411|PMID:18408978|PMID:22019193|DrugBank:DB00898|PMID:11200745|PMID:18411066|KEGG:D06542|KEGG:C00469|UM-BBD_compID:c0038|PMID:16390872|PMID:22222864|PMID:12888778|PMID:11826039|PMID:11262320|PMID:15749123|PMID:22336593|PMID:15465973|PMID:22261437|PMID:18456322|PMID:16891664|PMID:18095657|PMID:11810019|PMID:18513832|PMID:21881875|PMID:22286266|CAS:64-17-5|PMID:16133132|PMID:15239123|MolBase:858|Beilstein:1718733|PMID:21600756|PPDB:1373|HMDB:HMDB0000108|Drug_Central:1076|PMID:15902919|PMID:11198720|PMID:11333032|PMID:19851413|PMID:12946583|PMID:18922656|PMID:19359288|MetaCyc:ETOH|PMID:14674846|PMID:15285839|PDBeChem:EOH|PMID:11303910|PMID:19384566|PMID:11046114|PMID:16934862|PMID:11590970|PMID:19458312|PMID:17663926|PMID:11981228|PMID:16737463|Gmelin:787|KEGG:D00068|PMID:18347649|PMID:11505026|PMID:21967628|PMID:18925476|PMID:11750186|Wikipedia:Ethanol|PMID:21762181|PMID:17687877|KNApSAcK:C00019560|PMID:12829422|PMID:18320157 CHEBI:30878|CHEBI:44594|CHEBI:23978|CHEBI:4879|CHEBI:42377|CHEBI:14222|CHEBI:30880 chebi_ontology owl:Class CHEBI:16964 biolink:NamedThing 5-hydroxymethyluracil monarch-merged.owl owl:Class CHEBI:17007 biolink:NamedThing 1-(3,4-dimethoxyphenyl)ethane-1,2-diol monarch-merged.owl owl:Class CHEBI:17177 biolink:NamedThing cinnamyl alcohol monarch-merged.owl owl:Class CHEBI:17436 biolink:NamedThing (R)-5-phosphomevalonic acid monarch-merged.owl owl:Class CHEBI:17447 biolink:NamedThing geraniol monarch-merged.owl owl:Class CHEBI:17497 biolink:NamedThing glycolic acid monarch-merged.owl owl:Class CHEBI:17790 biolink:NamedThing methanol The primary alcohol that is the simplest aliphatic alcohol, comprising a methyl and an alcohol group. monarch-merged.owl Methanol|spirit of wood|methanol|Methyl alcohol|carbinol|wood alcohol|METHANOL|MeOH|wood naphtha|CH3OH|Methylalkohol|wood spirit 0 CH4O InChI=1S/CH4O/c1-2/h2H,1H3 OKKJLVBELUTLKV-UHFFFAOYSA-N 32.04186 32.02621 CO PMID:17733096|Reaxys:1098229|PMID:11489599|Gmelin:449|PMID:19064074|PMID:11684179|PMID:19850112|PMID:20314698|PMID:15172721|KEGG:D02309|PMID:11680737|UM-BBD_compID:c0132|PMID:17451998|PMID:14012711|MetaCyc:METOH|PMID:14760634|PMID:11141607|PMID:11430978|Wikipedia:Methanol|PMID:15906011|CAS:67-56-1|Beilstein:1098229|PMID:14678513|PMID:16705261|PDBeChem:MOH|KEGG:C00132|HMDB:HMDB0001875 CHEBI:44080|CHEBI:25227|CHEBI:6816|CHEBI:44553|CHEBI:14588 chebi_ontology owl:Class CHEBI:17957 biolink:NamedThing 5-(2-hydroxyethyl)-4-methylthiazole monarch-merged.owl owl:Class CHEBI:18385 biolink:NamedThing thiamine(1+) monarch-merged.owl owl:Class CHEBI:22967 biolink:NamedThing butyn-1-ols monarch-merged.owl owl:Class CHEBI:23470 biolink:NamedThing cyclohexadienol monarch-merged.owl owl:Class CHEBI:23982 biolink:NamedThing ethanols Any primary alcohol based on an ethanol skeleton. monarch-merged.owl chebi_ontology owl:Class CHEBI:25639 biolink:NamedThing octadienol monarch-merged.owl owl:Class CHEBI:26279 biolink:NamedThing propan-1-ols monarch-merged.owl owl:Class CHEBI:26300 biolink:NamedThing propenol monarch-merged.owl owl:Class CHEBI:26313 biolink:NamedThing propynol monarch-merged.owl owl:Class CHEBI:26874 biolink:NamedThing terpenol monarch-merged.owl owl:Class CHEBI:27957 biolink:NamedThing hydroxyacetone monarch-merged.owl owl:Class CHEBI:27995 biolink:NamedThing 3-methylbenzyl alcohol monarch-merged.owl owl:Class CHEBI:28386 biolink:NamedThing 4-hydroxycinnamyl alcohol monarch-merged.owl owl:Class CHEBI:28600 biolink:NamedThing farnesol monarch-merged.owl owl:Class CHEBI:28700 biolink:NamedThing 20-hydroxy-leukotriene E4 monarch-merged.owl owl:Class CHEBI:28813 biolink:NamedThing sinapyl alcohol monarch-merged.owl owl:Class CHEBI:28878 biolink:NamedThing dodecan-1-ol monarch-merged.owl owl:Class CHEBI:28885 biolink:NamedThing butan-1-ol monarch-merged.owl owl:Class CHEBI:28903 biolink:NamedThing decan-1-ol monarch-merged.owl owl:Class CHEBI:32023 biolink:NamedThing plaunotol monarch-merged.owl owl:Class CHEBI:32154 biolink:NamedThing octadecan-1-ol monarch-merged.owl owl:Class CHEBI:33857 biolink:NamedThing aromatic primary alcohol Any primary alcohol in which the alcoholic hydroxy group is attached to a carbon which is itself bonded to an aromatic ring. monarch-merged.owl an aromatic primary alcohol|Aromatic primary alcohol|aromatic primary alcohols 0 CH3OR 31.034 31.01839 *C(O)([H])[H] KEGG:C03485 CHEBI:2838|CHEBI:22628|CHEBI:13823 chebi_ontology owl:Class CHEBI:3576 biolink:NamedThing chanoclavine-I monarch-merged.owl owl:Class CHEBI:37420 biolink:NamedThing 12-hydroxyjasmonic acid monarch-merged.owl owl:Class CHEBI:38238 biolink:NamedThing prosolanapyrone II monarch-merged.owl owl:Class CHEBI:38467 biolink:NamedThing indolyl alcohol monarch-merged.owl owl:Class CHEBI:41218 biolink:NamedThing mercaptoethanol monarch-merged.owl owl:Class CHEBI:412516 biolink:NamedThing 5-hydroxymethylfurfural monarch-merged.owl owl:Class CHEBI:43572 biolink:NamedThing kojic acid monarch-merged.owl owl:Class CHEBI:44884 biolink:NamedThing pentan-1-ol monarch-merged.owl owl:Class CHEBI:46645 biolink:NamedThing isobutanol monarch-merged.owl owl:Class CHEBI:50281 biolink:NamedThing lavandulol monarch-merged.owl owl:Class CHEBI:52388 biolink:NamedThing 4-hydroxymethylzymosterol monarch-merged.owl owl:Class CHEBI:52640 biolink:NamedThing N-acylethanolamine monarch-merged.owl owl:Class CHEBI:61148 biolink:NamedThing drimenol monarch-merged.owl owl:Class CHEBI:62150 biolink:NamedThing (3,4-dimethoxyphenyl)methanol monarch-merged.owl owl:Class CHEBI:62898 biolink:NamedThing isopentenyl alcohol monarch-merged.owl owl:Class CHEBI:63243 biolink:NamedThing pentalen-13-ol monarch-merged.owl owl:Class CHEBI:63656 biolink:NamedThing 9beta-pimara-7,15-dien-19-ol monarch-merged.owl owl:Class CHEBI:63683 biolink:NamedThing (13E)-labda-7,13-dien-15-ol monarch-merged.owl owl:Class CHEBI:67246 biolink:NamedThing (+)-lariciresinol monarch-merged.owl owl:Class CHEBI:67939 biolink:NamedThing erythrodiol monarch-merged.owl owl:Class CHEBI:76943 biolink:NamedThing (+)-copalol monarch-merged.owl owl:Class CHEBI:76950 biolink:NamedThing (-)-ent-copalol monarch-merged.owl owl:Class CHEBI:76952 biolink:NamedThing syn-copalol monarch-merged.owl owl:Class CHEBI:77417 biolink:NamedThing tetradecan-1-ol monarch-merged.owl owl:Class CHEBI:77468 biolink:NamedThing pentadecan-1-ol monarch-merged.owl owl:Class CHEBI:77470 biolink:NamedThing heptadecan-1-ol monarch-merged.owl owl:Class CHEBI:78276 biolink:NamedThing omega-hydroxyphylloquinone monarch-merged.owl owl:Class CHEBI:78278 biolink:NamedThing omega-hydroxymenaquinone-4 monarch-merged.owl owl:Class CHEBI:78370 biolink:NamedThing cyclooctatin monarch-merged.owl owl:Class CHEBI:78502 biolink:NamedThing (S)-2-aminopropan-1-ol monarch-merged.owl owl:Class CHEBI:82687 biolink:NamedThing 5-(2-hydroxyethyl)-1,3-thiazole monarch-merged.owl owl:Class CHEBI:83564 biolink:NamedThing (R)-3-phosphomevalonic acid monarch-merged.owl owl:Class CHEBI:84962 biolink:NamedThing 13-hydroxy-alpha-tocopherol monarch-merged.owl owl:Class CHEBI:84963 biolink:NamedThing 13-hydroxy-gamma-tocopherol monarch-merged.owl owl:Class CHEBI:84985 biolink:NamedThing (2E,6E,10E)-omega-hydroxyfarnesyl diphosphate monarch-merged.owl owl:Class CHEBI:85477 biolink:NamedThing 4-hydroxy-6-(15-hydroxypentadecyl)-pyran-2-one monarch-merged.owl owl:Class CHEBI:85481 biolink:NamedThing 4-hydroxy-6-(14-hydroxytetradecyl)-pyran-2-one monarch-merged.owl owl:Class CHEBI:85492 biolink:NamedThing 4-hydroxy-6-(17-hydroxy-2-oxoheptadecyl)pyran-2-one monarch-merged.owl owl:Class CHEBI:85495 biolink:NamedThing 4-hydroxy-6-(16-hydroxy-2-oxohexadecyl)pyran-2-one monarch-merged.owl owl:Class CHEBI:9036 biolink:NamedThing sarpagine monarch-merged.owl owl:Class CHEBI:91209 biolink:NamedThing glycosmisic acid monarch-merged.owl owl:Class CHEBI:2468 biolink:NamedThing secondary alpha-hydroxy ketone monarch-merged.owl owl:Class CHEBI:132797 biolink:NamedThing 8-oxoresolvin D1 monarch-merged.owl owl:Class CHEBI:136565 biolink:NamedThing (6R)-6-lactoyl-5,6,7,8-tetrahydropterin monarch-merged.owl owl:Class CHEBI:137077 biolink:NamedThing 2beta-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:137456 biolink:NamedThing (S)-3,4-dihydroxy-2-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:137486 biolink:NamedThing (R)-3,4-dihydroxy-2-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:137488 biolink:NamedThing 16alpha-hydroxyestrone 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:138188 biolink:NamedThing (2R,3R)-dihydroflavonol monarch-merged.owl owl:Class CHEBI:138221 biolink:NamedThing CDP-D-ribulose monarch-merged.owl owl:Class CHEBI:138281 biolink:NamedThing 16-oxoresolvin D2 monarch-merged.owl owl:Class CHEBI:138970 biolink:NamedThing ent-3beta-hydroxycassa-12,15-dien-2-one monarch-merged.owl owl:Class CHEBI:139396 biolink:NamedThing CDP-4-dehydro-6-deoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:14216 biolink:NamedThing erythrulose 1-phosphate monarch-merged.owl owl:Class CHEBI:15401 biolink:NamedThing (+)-dihydrokaempferol monarch-merged.owl owl:Class CHEBI:15567 biolink:NamedThing (1S,4S)-4-hydroxy-3-oxocyclohexane-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:15688 biolink:NamedThing acetoin monarch-merged.owl owl:Class CHEBI:15984 biolink:NamedThing N-(4-nitrophenyl)-3-oxovalidamine monarch-merged.owl owl:Class CHEBI:16095 biolink:NamedThing sepiapterin monarch-merged.owl owl:Class CHEBI:16278 biolink:NamedThing 2-hydroxy-3-oxoadipic acid monarch-merged.owl owl:Class CHEBI:16694 biolink:NamedThing 5D-(5/6)-2,6-dihydroxy-5-(hydroxymethyl)cyclohex-2-en-1-one monarch-merged.owl owl:Class CHEBI:16965 biolink:NamedThing 2,3-dihydrogossypetin monarch-merged.owl owl:Class CHEBI:17058 biolink:NamedThing 3-dehydroecdysone monarch-merged.owl owl:Class CHEBI:17248 biolink:NamedThing 6-lactoyl-5,6,7,8-tetrahydropterin monarch-merged.owl owl:Class CHEBI:17320 biolink:NamedThing 23,24-dihydrocucurbitacin monarch-merged.owl owl:Class CHEBI:17494 biolink:NamedThing CDP-4-dehydro-6-deoxy-D-glucose monarch-merged.owl owl:Class CHEBI:17682 biolink:NamedThing benzoin monarch-merged.owl owl:Class CHEBI:17778 biolink:NamedThing 2-hydroxy-3-oxosuccinic acid monarch-merged.owl owl:Class CHEBI:17867 biolink:NamedThing UDP-2-acetamido-4-dehydro-2,6-dideoxy-beta-D-glucose monarch-merged.owl owl:Class CHEBI:17878 biolink:NamedThing 2-hydroxycyclohexan-1-one monarch-merged.owl owl:Class CHEBI:17947 biolink:NamedThing 3-dehydroquinic acid monarch-merged.owl owl:Class CHEBI:17953 biolink:NamedThing xanthopterin-B2 monarch-merged.owl owl:Class CHEBI:18193 biolink:NamedThing 10-deacetylbaccatin III monarch-merged.owl owl:Class CHEBI:18351 biolink:NamedThing 4-hydroxyhexan-3-one monarch-merged.owl owl:Class CHEBI:23958 biolink:NamedThing erythrulose monarch-merged.owl owl:Class CHEBI:27582 biolink:NamedThing 16alpha-hydroxyandrost-4-ene-3,17-dione monarch-merged.owl owl:Class CHEBI:27645 biolink:NamedThing dTDP-3-dehydro-4,6-dideoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:27678 biolink:NamedThing dTDP-3-dehydro-6-deoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:27771 biolink:NamedThing 16alpha-hydroxydehydroepiandrosterone monarch-merged.owl owl:Class CHEBI:27951 biolink:NamedThing (R)-3-hydroxy-2-oxo-4-phosphonooxybutanoic acid monarch-merged.owl owl:Class CHEBI:28446 biolink:NamedThing 3D-3,5/4-trihydroxycyclohexane-1,2-dione monarch-merged.owl owl:Class CHEBI:29484 biolink:NamedThing (S)-4,5-dihydroxypentane-2,3-dione monarch-merged.owl owl:Class CHEBI:29514 biolink:NamedThing 5-amino-5-deoxy-3-dehydroshikimic acid monarch-merged.owl owl:Class CHEBI:30918 biolink:NamedThing 3-dehydroshikimic acid monarch-merged.owl owl:Class CHEBI:32274 biolink:NamedThing UDP-3-keto-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:32897 biolink:NamedThing 10-deacetyl-2-debenzoylbaccatin III monarch-merged.owl owl:Class CHEBI:38747 biolink:NamedThing taxifolin monarch-merged.owl owl:Class CHEBI:3941 biolink:NamedThing cucurbitacin B monarch-merged.owl owl:Class CHEBI:4672 biolink:NamedThing docetaxel anhydrous monarch-merged.owl owl:Class CHEBI:47813 biolink:NamedThing (1S)-1,23,25-trihydroxy-24-oxocalciol monarch-merged.owl owl:Class CHEBI:48040 biolink:NamedThing 2,3-dihydroflavon-3-ol monarch-merged.owl owl:Class CHEBI:50606 biolink:NamedThing 2-hydroxy-3-oxobutyl phosphate monarch-merged.owl owl:Class CHEBI:52225 biolink:NamedThing UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose monarch-merged.owl owl:Class CHEBI:59809 biolink:NamedThing docetaxel trihydrate monarch-merged.owl owl:Class CHEBI:62217 biolink:NamedThing 23,24-dihydrocucurbitacin B monarch-merged.owl owl:Class CHEBI:62420 biolink:NamedThing UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-hex-4-ulose monarch-merged.owl owl:Class CHEBI:62424 biolink:NamedThing UDP-2-acetamido-2-deoxy-alpha-D-ribo-hex-3-uloseuronic acid monarch-merged.owl owl:Class CHEBI:62428 biolink:NamedThing UDP-2-acetamido-2,6-dideoxy-beta-L-lyxo-hex-4-ulose monarch-merged.owl owl:Class CHEBI:63302 biolink:NamedThing dTDP-3-dehydro-6-deoxy-alpha-D-galactose monarch-merged.owl owl:Class CHEBI:63553 biolink:NamedThing 2-hydroxy-1-phenyl-1-propanone monarch-merged.owl owl:Class CHEBI:71316 biolink:NamedThing (2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one monarch-merged.owl owl:Class CHEBI:71684 biolink:NamedThing (2S)-2-hydroxy-3,4-diketopentyl phosphate monarch-merged.owl owl:Class CHEBI:776 biolink:NamedThing 16alpha-hydroxyestrone monarch-merged.owl owl:Class CHEBI:85366 biolink:NamedThing 3-hydroxy-2,4-dioxopentyl phosphate monarch-merged.owl owl:Class CHEBI:85368 biolink:NamedThing dTDP-4-dehydro-2,6-dideoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:86013 biolink:NamedThing 2-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:87774 biolink:NamedThing 16alpha-hydroxydehydroepiandrosterone 3-sulfate monarch-merged.owl owl:Class CHEBI:90980 biolink:NamedThing 23(S),25-dihydroxy-24-oxovitamin D3 monarch-merged.owl owl:Class CHEBI:27136 biolink:NamedThing triol A chemical compound containing three hydroxy groups. monarch-merged.owl triols chebi_ontology owl:Class CHEBI:131946 biolink:NamedThing valienone 7-phosphate monarch-merged.owl owl:Class CHEBI:131949 biolink:NamedThing validone 7-phosphate monarch-merged.owl owl:Class CHEBI:138196 biolink:NamedThing 19-hydroxyleukotriene B4 monarch-merged.owl owl:Class CHEBI:138201 biolink:NamedThing 18-hydroxyleukotriene B4 monarch-merged.owl owl:Class CHEBI:138582 biolink:NamedThing 19-hydroxyprostaglandin I2 monarch-merged.owl owl:Class CHEBI:16715 biolink:NamedThing 1,5-anhydro-D-fructose monarch-merged.owl owl:Class CHEBI:17754 biolink:NamedThing glycerol A triol with a structure of propane substituted at positions 1, 2 and 3 by hydroxy groups. monarch-merged.owl Glycerin|Trihydroxypropane|glycerol|GLYCEROL|Glycerol|glycyl alcohol|Propanetriol|Glyzerin|Gro|Oelsuess|propane-1,2,3-triol|glycerolum|Glyceritol|glycerine|1,2,3-Propanetriol|1,2,3-Trihydroxypropane 0 C3H8O3 InChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2 PEDCQBHIVMGVHV-UHFFFAOYSA-N 92.09382 92.04734 OCC(O)CO PMID:14559393|PMID:14563847|LINCS:LSM-37180|PMID:17979222|PMID:16258193|Reaxys:635685|PDB:2AJS|MetaCyc:GLYCEROL|PMID:12672239|PMID:11958517|YMDB:YMDB00283|KEGG:C00116|PDB:2D03|PDBeChem:GOL|PMID:12689633|PMID:16651733|Gmelin:26279|PMID:16349488|PMID:24643482|PMID:16244855|Wikipedia:Glycerol|PMID:23562176|PMID:16664750|PMID:19184438|PMID:19548674|PMID:25108762|PMID:19460032|PMID:19231894|PMID:15342117|PMID:19956799|KEGG:D00028|HMDB:HMDB0000131|PPDB:1317|PMID:16319039|Beilstein:635685|PMID:15786693|KNApSAcK:C00001163|CAS:56-81-5|PMID:7392035|DrugBank:DB04077|PMID:23747440|PMID:16901854|ECMDB:ECMDB00131|PMID:17336832|PMID:22705534|Drug_Central:1316|PMID:7031247|PMID:17439666|UM-BBD_compID:c0066|PMID:19795216 CHEBI:14334|CHEBI:131422|CHEBI:24351|CHEBI:42998|CHEBI:5448 chebi_ontology owl:Class CHEBI:17823 biolink:NamedThing calcitriol A hydroxycalciol that is calcidiol in which the pro-S hydrogen of calcidiol is replaced by a hydroxy group. It is the active form of vitamin D3, produced fom calciol via hydoxylation in the liver to form calcidiol, which is subsequently oxidised in the kidney to give calcitriol. monarch-merged.owl 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL|(1S,3R,5Z,7E)-9,10-secocholesta-5,7,10(19)-triene-1,3,25-triol|Calcijex|calcitriolum|calcitriol|(1alpha,3beta,5Z,7E)-9,10-secocholesta-5,7,10(19)-triene-1,3,25-triol|1alpha,25-dihydroxyvitamin D3|(5Z,7E)-(1S,3R)-9,10-secocholesta-5,7,10(19)-triene-1,3,25-triol|1alpha,25-dihydroxycholecalciferol|1alpha,25(OH)2D3|(1S,3R,5Z,7E)-9,10-secocholesta-5,7,10-triene-1,3,25-triol|1-alpha-25-Dihydroxyvitamin D3|Rocaltrol|1,25-DHCC|Decostriol|Calcitriol 0 C27H44O3 InChI=1S/C27H44O3/c1-18(8-6-14-26(3,4)30)23-12-13-24-20(9-7-15-27(23,24)5)10-11-21-16-22(28)17-25(29)19(21)2/h10-11,18,22-25,28-30H,2,6-9,12-17H2,1,3-5H3/b20-10+,21-11-/t18-,22-,23-,24+,25+,27-/m1/s1 GMRQFYUYWCNGIN-NKMMMXOESA-N 416.63646 416.32905 [H][C@@]1(CC[C@@]2([H])\C(CCC[C@]12C)=C\C=C1\C[C@@H](O)C[C@H](O)C1=C)[C@H](C)CCCC(C)(C)O PMID:23144765|DrugBank:DB00136|PMID:20599255|PMID:10217585|LIPID_MAPS_instance:LMST03020258|KEGG:D00129|PMID:15928596|Reaxys:2227647|PMID:19429426|PMID:23103122|Beilstein:2227647|Drug_Central:466|PDBeChem:VDX|Wikipedia:Calcitriol|KEGG:C01673|PMID:6687801|PMID:22905919|MetaCyc:CALCITRIOL|CAS:32222-06-3 CHEBI:46435|CHEBI:13932|CHEBI:19209|CHEBI:3307 chebi_ontology owl:Class CHEBI:18431 biolink:NamedThing 7alpha,26-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:22707 biolink:NamedThing benzenetriol monarch-merged.owl owl:Class CHEBI:28621 biolink:NamedThing triethanolamine monarch-merged.owl owl:Class CHEBI:29658 biolink:NamedThing oleandolide monarch-merged.owl owl:Class CHEBI:31144 biolink:NamedThing 8-demethyltetracenomycin C monarch-merged.owl owl:Class CHEBI:38221 biolink:NamedThing fumonisin B1 monarch-merged.owl owl:Class CHEBI:42471 biolink:NamedThing forskolin monarch-merged.owl owl:Class CHEBI:46961 biolink:NamedThing phytosphingosine monarch-merged.owl owl:Class CHEBI:59237 biolink:NamedThing phenolic phthiocerol monarch-merged.owl owl:Class CHEBI:70968 biolink:NamedThing 15-methylhexadecaphytosphingosine monarch-merged.owl owl:Class CHEBI:732 biolink:NamedThing 5beta-dihydrocortisol monarch-merged.owl owl:Class CHEBI:81559 biolink:NamedThing resolvin E1 monarch-merged.owl owl:Class CHEBI:81564 biolink:NamedThing resolvin D1 monarch-merged.owl owl:Class CHEBI:81565 biolink:NamedThing resolvin D2 monarch-merged.owl owl:Class CHEBI:85779 biolink:NamedThing 4beta,7alpha-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:85809 biolink:NamedThing 5alpha-androstane-3beta,6alpha,17beta-triol monarch-merged.owl owl:Class CHEBI:85810 biolink:NamedThing androst-5-ene-3beta,7alpha,17beta-triol monarch-merged.owl owl:Class CHEBI:86962 biolink:NamedThing veratryl glycerol monarch-merged.owl owl:Class CHEBI:87122 biolink:NamedThing monoanhydrobacterioruberin monarch-merged.owl owl:Class CHEBI:90984 biolink:NamedThing 20(S),25-dihydroxyvitamin D3 monarch-merged.owl owl:Class CHEBI:90985 biolink:NamedThing (20S,24R)-dihydroxyvitamin D3 monarch-merged.owl owl:Class CHEBI:90986 biolink:NamedThing (20S,24S)-dihydroxyvitamin D3 monarch-merged.owl owl:Class CHEBI:91306 biolink:NamedThing (20S,23)-dihydroxyvitamin D3 monarch-merged.owl owl:Class CHEBI:3992 biolink:NamedThing cyclic ketone monarch-merged.owl cyclic ketones|Cyclic ketone KEGG:C02019 chebi_ontology owl:Class CHEBI:131906 biolink:NamedThing 4-pyranones monarch-merged.owl owl:Class CHEBI:131907 biolink:NamedThing 3-pyrones monarch-merged.owl owl:Class CHEBI:136557 biolink:NamedThing (4aS,10bR)-noroxomaritidine monarch-merged.owl owl:Class CHEBI:136560 biolink:NamedThing (4aR,10bS)-noroxomaritidine monarch-merged.owl owl:Class CHEBI:137994 biolink:NamedThing (2E)-2-ethylidene-4-hydroxy-5-methyl-3(2H)-furanone monarch-merged.owl owl:Class CHEBI:137995 biolink:NamedThing 2-ethyl-4-hydroxy-5-methyl-3(2H)-furanone monarch-merged.owl owl:Class CHEBI:146281 biolink:NamedThing anthracenone monarch-merged.owl owl:Class CHEBI:16548 biolink:NamedThing chlordecone monarch-merged.owl owl:Class CHEBI:16945 biolink:NamedThing scytalone monarch-merged.owl owl:Class CHEBI:17390 biolink:NamedThing allocryptopine monarch-merged.owl owl:Class CHEBI:19168 biolink:NamedThing 17-oxo steroid Any oxo steroid carrying the oxo group at position 17. monarch-merged.owl 17-keto steroids|17-ketosteroids|17-oxo steroids chebi_ontology owl:Class CHEBI:19733 biolink:NamedThing (2,2,3-trimethyl-5-oxocyclopent-3-en-1-yl)acetate monarch-merged.owl owl:Class CHEBI:22235 biolink:NamedThing adamantanones monarch-merged.owl owl:Class CHEBI:24057 biolink:NamedThing fluoren-9-ones monarch-merged.owl owl:Class CHEBI:24789 biolink:NamedThing indanones monarch-merged.owl owl:Class CHEBI:25479 biolink:NamedThing naphthalenone monarch-merged.owl owl:Class CHEBI:26335 biolink:NamedThing prostaglandins B monarch-merged.owl owl:Class CHEBI:26338 biolink:NamedThing prostaglandins E monarch-merged.owl PGE 0 C5H6O2R2 98.09990 98.03678 O[C@@H]1CC(=O)[C@H]([*])[C@H]1[*] chebi_ontology owl:Class CHEBI:27641 biolink:NamedThing cycloheximide monarch-merged.owl owl:Class CHEBI:28045 biolink:NamedThing (2,2,3-trimethyl-5-oxocyclopent-3-en-1-yl)acetic acid monarch-merged.owl owl:Class CHEBI:28863 biolink:NamedThing flavanones monarch-merged.owl owl:Class CHEBI:36132 biolink:NamedThing alicyclic ketone A cyclic ketone in which the carbocyclic ring structure which may be saturated or unsaturated, but may not be a benzenoid or other aromatic system. monarch-merged.owl alicyclic ketone|alicyclic ketones owl:Class CHEBI:36141 biolink:NamedThing quinone Compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, derived from aromatic compounds by conversion of an even number of -CH= groups into -C(=O)- groups with any necessary rearrangement of double bonds (polycyclic and heterocyclic analogues are included). monarch-merged.owl quinones|quinone|Chinon Wikipedia:Quinone CHEBI:13684|CHEBI:26517 chebi_ontology owl:Class CHEBI:38741 biolink:NamedThing isoflavanones monarch-merged.owl owl:Class CHEBI:38757 biolink:NamedThing isoflavones monarch-merged.owl owl:Class CHEBI:38763 biolink:NamedThing chromanone monarch-merged.owl owl:Class CHEBI:42355 biolink:NamedThing erythromycin A monarch-merged.owl owl:Class CHEBI:47788 biolink:NamedThing 3-oxo steroid Any oxo steroid where an oxo substituent is located at position 3. monarch-merged.owl 3-Oxosteroid|3-oxo steroids|3-oxosteroids|a 3-oxosteroid 0 C19H29OR 273.434 273.22184 C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CCC(C4)=O)C PMID:9811880|MetaCyc:3-Oxosteroids|KEGG:C01876 CHEBI:13607|CHEBI:1653|CHEBI:71186|CHEBI:20182 chebi_ontology owl:Class CHEBI:47964 biolink:NamedThing aurone monarch-merged.owl owl:Class CHEBI:49098 biolink:NamedThing (6R)-2-acetyl-6-(3-acetyl-2,4,6-trihydroxy-5-methylphenyl)-3-hydroxy-6-methylcyclohexa-2,4-dien-1-one monarch-merged.owl owl:Class CHEBI:50361 biolink:NamedThing ketolactone monarch-merged.owl owl:Class CHEBI:51149 biolink:NamedThing xanthones monarch-merged.owl owl:Class CHEBI:52289 biolink:NamedThing wortmannin monarch-merged.owl owl:Class CHEBI:60854 biolink:NamedThing 6-amino-5-oxocyclohex-2-ene-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:62444 biolink:NamedThing soyasapogenol E monarch-merged.owl owl:Class CHEBI:63245 biolink:NamedThing 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monarch-merged.owl owl:Class CHEBI:63892 biolink:NamedThing zerumbone monarch-merged.owl owl:Class CHEBI:64397 biolink:NamedThing asperfuranone monarch-merged.owl owl:Class CHEBI:64499 biolink:NamedThing shamixanthone monarch-merged.owl owl:Class CHEBI:64542 biolink:NamedThing naphtho-gamma-pyrone monarch-merged.owl owl:Class CHEBI:65013 biolink:NamedThing extended quinone monarch-merged.owl owl:Class CHEBI:67115 biolink:NamedThing ecgonone methyl ester monarch-merged.owl owl:Class CHEBI:71354 biolink:NamedThing norsolorinic acid anthrone monarch-merged.owl owl:Class CHEBI:72581 biolink:NamedThing rotenones monarch-merged.owl owl:Class CHEBI:72750 biolink:NamedThing neosartoricin monarch-merged.owl owl:Class CHEBI:76245 biolink:NamedThing 4-hydroxy-5-methyl-2-methylenefuran-3-one monarch-merged.owl owl:Class CHEBI:76247 biolink:NamedThing 4-hydroxy-2,5-dimethylfuran-3-one monarch-merged.owl owl:Class CHEBI:78283 biolink:NamedThing 8-demethyl-8-(alpha-L-rhamnosyl)tetracenomycin C monarch-merged.owl owl:Class CHEBI:8116 biolink:NamedThing phorbol A diterpenoid with the structure of tigliane hydroxylated at C-4, -9, -12(beta), -13 and -20, with an oxo group at C-3 and unsaturation at the 1- and 6-positions. monarch-merged.owl (1aR,1bS,4aR,7aS,7bS,8R,9R,9aS)-4a,7b,9,9a-tetrahydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-1,1a,1b,4,4a,7a,7b,8,9,9a-decahydro-5H-cyclopropa[3,4]benzo[1,2-e]azulen-5-one|4,9,12beta,13,20-pentahydroxy-1,6-tigliadien-3-on|Phorbol|4,9,12beta,13,20-pentahydroxytiglia-1,6-dien-3-one 0 C20H28O6 InChI=1S/C20H28O6/c1-9-5-13-18(24,15(9)22)7-11(8-21)6-12-14-17(3,4)20(14,26)16(23)10(2)19(12,13)25/h5-6,10,12-14,16,21,23-26H,7-8H2,1-4H3/t10-,12+,13-,14-,16-,18-,19-,20-/m1/s1 QGVLYPPODPLXMB-UBTYZVCOSA-N 364.433 364.18859 C=1[C@@]2([C@@]([C@]3([C@@](C(=O)C(=C3)C)(CC1CO)O)[H])([C@H](C)[C@H]([C@@]4([C@]2(C4(C)C)[H])O)O)O)[H] KEGG:C09155|CAS:17673-25-5|LIPID_MAPS_instance:LMPR0104330001|PMID:27007853|KNApSAcK:C00003465|Beilstein:2341335 chebi_ontology owl:Class CHEBI:81873 biolink:NamedThing 12-deoxynogalonic acid monarch-merged.owl owl:Class CHEBI:85575 biolink:NamedThing 3,17-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9-one monarch-merged.owl owl:Class CHEBI:85576 biolink:NamedThing 3,4,17-trihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9-one monarch-merged.owl owl:Class CHEBI:87837 biolink:NamedThing ketocytochalasin monarch-merged.owl owl:Class CHEBI:87838 biolink:NamedThing iso-precytochalasin monarch-merged.owl owl:Class CHEBI:87839 biolink:NamedThing cytochalasin Z16 monarch-merged.owl owl:Class CHEBI:90785 biolink:NamedThing 4-hydroxy-2-methyl-3-oxo-[(2E,6E)-farnesyl]-3,4-dihydroquinoline-1-oxide monarch-merged.owl owl:Class CHEBI:90901 biolink:NamedThing protoasukamycin monarch-merged.owl owl:Class CHEBI:90902 biolink:NamedThing 4-hydroxyprotoasukamycin monarch-merged.owl owl:Class CHEBI:9168 biolink:NamedThing sirolimus monarch-merged.owl owl:Class CHEBI:9192 biolink:NamedThing solavetivone monarch-merged.owl owl:Class CHEBI:51689 biolink:NamedThing enone An alpha,beta-unsaturated ketone of general formula R(1)R(2)C=CR(3)-C(=O)R(4) (R(4) =/= H) in which the C=O function is conjugated to a C=C double bond at the alpha,beta position. monarch-merged.owl enones 0 C3OR4 52.03150 51.99491 [*]\C([*])=C(\[*])C([*])=O Wikipedia:Enone chebi_ontology owl:Class CHEBI:111521 biolink:NamedThing valienone monarch-merged.owl owl:Class CHEBI:131617 biolink:NamedThing 18-oxoresolvin E1 monarch-merged.owl owl:Class CHEBI:132052 biolink:NamedThing (S)-demethyl-4-deoxygadusol monarch-merged.owl owl:Class CHEBI:132128 biolink:NamedThing (3R)-farnesyl-6-hydroxy-2,3,5-trimethyl-4-oxocyclohexa-1,5-diene-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:132137 biolink:NamedThing (R)-demethyl-4-deoxygadusol monarch-merged.owl owl:Class CHEBI:132800 biolink:NamedThing 17-oxoresolvin D1 monarch-merged.owl owl:Class CHEBI:133457 biolink:NamedThing (3E)-3-nonen-2-one monarch-merged.owl owl:Class CHEBI:134191 biolink:NamedThing 20-oxo-5-O-beta-mycaminosyltylactone monarch-merged.owl owl:Class CHEBI:136531 biolink:NamedThing 13-oxo-9,11-octadecadienoic acid monarch-merged.owl owl:Class CHEBI:136848 biolink:NamedThing beta-bitter acid monarch-merged.owl owl:Class CHEBI:137491 biolink:NamedThing epitestosterone 17-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:138279 biolink:NamedThing 7-oxoresolvin D2 monarch-merged.owl owl:Class CHEBI:138434 biolink:NamedThing 6-{(1S,5S)-4-oxo-5-[(2Z)-pent-2-en-1-yl]cyclopent-2-en-1-yl}hexanoic acid monarch-merged.owl owl:Class CHEBI:139248 biolink:NamedThing [4-(6-methylheptanoyl)-5-oxo-2,5-dihydrofuran-3-yl]methyl phosphate monarch-merged.owl owl:Class CHEBI:140610 biolink:NamedThing 4'-hydroxyechinenone monarch-merged.owl owl:Class CHEBI:140676 biolink:NamedThing 4',4'-dihydroxyechinenone monarch-merged.owl owl:Class CHEBI:15403 biolink:NamedThing (+)-sabinone monarch-merged.owl owl:Class CHEBI:15906 biolink:NamedThing demethylmacrocin monarch-merged.owl owl:Class CHEBI:15939 biolink:NamedThing glycyrrhizinic acid monarch-merged.owl owl:Class CHEBI:17371 biolink:NamedThing macrocin monarch-merged.owl owl:Class CHEBI:17658 biolink:NamedThing tylosin monarch-merged.owl owl:Class CHEBI:17820 biolink:NamedThing 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:18204 biolink:NamedThing 16,17-didehydroprogesterone monarch-merged.owl owl:Class CHEBI:18429 biolink:NamedThing dehydrovomifoliol monarch-merged.owl owl:Class CHEBI:20156 biolink:NamedThing 3-oxo-Delta(1) steroid monarch-merged.owl owl:Class CHEBI:23086 biolink:NamedThing chalcones monarch-merged.owl owl:Class CHEBI:26153 biolink:NamedThing p-menthadien-3-one monarch-merged.owl owl:Class CHEBI:26334 biolink:NamedThing prostaglandins A monarch-merged.owl owl:Class CHEBI:26346 biolink:NamedThing prostaglandins J monarch-merged.owl owl:Class CHEBI:26381 biolink:NamedThing p-menth-4(8)-en-3-one monarch-merged.owl owl:Class CHEBI:28835 biolink:NamedThing testosterone 17-glucosiduronic acid monarch-merged.owl owl:Class CHEBI:29491 biolink:NamedThing 5-O-beta-D-mycaminosyltylactone monarch-merged.owl owl:Class CHEBI:29572 biolink:NamedThing demethyllactenocin monarch-merged.owl owl:Class CHEBI:29630 biolink:NamedThing methymycin monarch-merged.owl owl:Class CHEBI:29649 biolink:NamedThing narbomycin monarch-merged.owl owl:Class CHEBI:29650 biolink:NamedThing narbonolide monarch-merged.owl owl:Class CHEBI:29656 biolink:NamedThing neomethymycin monarch-merged.owl owl:Class CHEBI:29665 biolink:NamedThing pikromycin monarch-merged.owl owl:Class CHEBI:29700 biolink:NamedThing tylactone monarch-merged.owl owl:Class CHEBI:3962 biolink:NamedThing curcumin monarch-merged.owl owl:Class CHEBI:4077 biolink:NamedThing (4R,5S,6R)-2,4,5,6-tetrahydroxycyclohex-2-en-1-one monarch-merged.owl owl:Class CHEBI:47909 biolink:NamedThing 3-oxo-Delta(4) steroid A 3-oxo steroid conjugated to a C=C double bond at the alpha,beta position. monarch-merged.owl 3-oxo-Delta(4) steroids|3-oxo Delta(4)-steroids|3-Oxo-delta4-steroid|3-oxo Delta(4)-steroid|a 3-oxo-Delta(4)-steroid 0 C19H27OR 271.418 271.20619 C12C(C3C(C(CC3)*)(C)CC1)CCC=4C2(CCC(C4)=O)C KEGG:C00619|MetaCyc:3-Oxo-Delta-4-Steroids CHEBI:20157|CHEBI:13604|CHEBI:1626 chebi_ontology owl:Class CHEBI:48058 biolink:NamedThing buten-2-one monarch-merged.owl owl:Class CHEBI:49252 biolink:NamedThing 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one monarch-merged.owl owl:Class CHEBI:51460 biolink:NamedThing albaflavenone monarch-merged.owl owl:Class CHEBI:53175 biolink:NamedThing 13-apo-beta-carotenone monarch-merged.owl owl:Class CHEBI:64687 biolink:NamedThing 2,6-dioxo-6-phenylhexa-3-enoic acid monarch-merged.owl owl:Class CHEBI:65737 biolink:NamedThing demethoxycurcumin monarch-merged.owl owl:Class CHEBI:65932 biolink:NamedThing funalenone monarch-merged.owl owl:Class CHEBI:67262 biolink:NamedThing dihydrocurcumin monarch-merged.owl owl:Class CHEBI:68636 biolink:NamedThing p-hydroxyphenylbut-3-ene-2-one monarch-merged.owl owl:Class CHEBI:71045 biolink:NamedThing bisdemethoxycurcumin monarch-merged.owl owl:Class CHEBI:77009 biolink:NamedThing 5-O-beta-D-mycaminosyl-20-oxotylonolide monarch-merged.owl owl:Class CHEBI:77011 biolink:NamedThing 5-O-mycaminosyltylonolide monarch-merged.owl owl:Class CHEBI:77648 biolink:NamedThing novapikromycin monarch-merged.owl owl:Class CHEBI:77652 biolink:NamedThing novamethymycin monarch-merged.owl owl:Class CHEBI:78285 biolink:NamedThing 8-demethyl-8-(2-O-methyl-alpha-L-rhamnosyl)tetracenomycin C monarch-merged.owl owl:Class CHEBI:78286 biolink:NamedThing 8-demethyl-8-(2,3-O-dimethyl-alpha-L-rhamnosyl)tetracenomycin C monarch-merged.owl owl:Class CHEBI:78287 biolink:NamedThing 8-demethyl-8-(2,3,4-O-trimethyl-alpha-L-rhamnosyl)tetracenomycin C monarch-merged.owl owl:Class CHEBI:80656 biolink:NamedThing all-trans-4-oxoretinoic acid monarch-merged.owl owl:Class CHEBI:84107 biolink:NamedThing 1-O-(4-oxoretinoyl)-beta-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:84966 biolink:NamedThing ipsdienone monarch-merged.owl owl:Class CHEBI:85614 biolink:NamedThing neopikromycin monarch-merged.owl owl:Class CHEBI:89540 biolink:NamedThing methyl propenyl ketone monarch-merged.owl owl:Class CHEBI:90776 biolink:NamedThing 11-oxo-ETE monarch-merged.owl owl:Class CHEBI:90886 biolink:NamedThing 2-hydroxy-6-oxo-2,4-heptadienoic acid monarch-merged.owl owl:Class CHEBI:91130 biolink:NamedThing 2-trans-(+)-abscisic aldehyde monarch-merged.owl owl:Class CHEBI:91293 biolink:NamedThing 14-oxo-DoHE monarch-merged.owl owl:Class CHEBI:55517 biolink:NamedThing trichothecene monarch-merged.owl owl:Class CHEBI:10036 biolink:NamedThing wax ester monarch-merged.owl owl:Class CHEBI:35748 biolink:NamedThing fatty acid ester monarch-merged.owl owl:Class CHEBI:145037 biolink:NamedThing hydroperoxy fatty ester monarch-merged.owl owl:Class CHEBI:16079 biolink:NamedThing benzyl 2-methyl-3-oxobutanoate monarch-merged.owl owl:Class CHEBI:22748 biolink:NamedThing benzyl 2-methyl-3-hydroxybutanoate monarch-merged.owl owl:Class CHEBI:25835 biolink:NamedThing hexadecanoate ester monarch-merged.owl owl:Class CHEBI:40303 biolink:NamedThing lovastatin monarch-merged.owl owl:Class CHEBI:4986 biolink:NamedThing fatty acid methyl ester monarch-merged.owl owl:Class CHEBI:50477 biolink:NamedThing butyrate ester monarch-merged.owl owl:Class CHEBI:70760 biolink:NamedThing all-trans-retinyl oleate monarch-merged.owl owl:Class CHEBI:72596 biolink:NamedThing papulacandin monarch-merged.owl owl:Class CHEBI:75925 biolink:NamedThing octadecanoate ester monarch-merged.owl owl:Class CHEBI:76068 biolink:NamedThing N,O-dioleoylethanolamine monarch-merged.owl owl:Class CHEBI:76070 biolink:NamedThing O-oleoylanandamide monarch-merged.owl owl:Class CHEBI:76503 biolink:NamedThing monobutyrin monarch-merged.owl owl:Class CHEBI:78206 biolink:NamedThing fatty acid ethyl ester monarch-merged.owl owl:Class CHEBI:82985 biolink:NamedThing mevinolinic acid monarch-merged.owl owl:Class CHEBI:84426 biolink:NamedThing FAHFA monarch-merged.owl owl:Class CHEBI:87656 biolink:NamedThing hexanoate ester monarch-merged.owl owl:Class CHEBI:87657 biolink:NamedThing octanoate ester monarch-merged.owl owl:Class CHEBI:87658 biolink:NamedThing decanoate ester monarch-merged.owl owl:Class CHEBI:87659 biolink:NamedThing dodecanoate ester monarch-merged.owl owl:Class CHEBI:87691 biolink:NamedThing tetradecanoate ester monarch-merged.owl owl:Class CHEBI:9150 biolink:NamedThing simvastatin monarch-merged.owl owl:Class CHEBI:73702 biolink:NamedThing wax monarch-merged.owl owl:Class CHEBI:10043 biolink:NamedThing wogonin monarch-merged.owl owl:Class CHEBI:25401 biolink:NamedThing monomethoxyflavone monarch-merged.owl owl:Class CHEBI:15335 biolink:NamedThing 5,7-dihydroxy-4'-methoxyflavone monarch-merged.owl owl:Class CHEBI:16514 biolink:NamedThing 4',5,7-trihydroxy-3'-methoxyflavone monarch-merged.owl owl:Class CHEBI:16860 biolink:NamedThing 3',4',5,7-tetrahydroxy-3-methoxyflavone monarch-merged.owl owl:Class CHEBI:18200 biolink:NamedThing isoscoparin monarch-merged.owl owl:Class CHEBI:28018 biolink:NamedThing 3,3',4',5,7-pentahydroxy-8-methoxyflavone monarch-merged.owl owl:Class CHEBI:31763 biolink:NamedThing laricitrin monarch-merged.owl owl:Class CHEBI:59976 biolink:NamedThing 3'-O-methyltricetin monarch-merged.owl owl:Class CHEBI:6099 biolink:NamedThing kaempferide monarch-merged.owl owl:Class CHEBI:61282 biolink:NamedThing wogonin 7-O-beta-D-glucuronide monarch-merged.owl owl:Class CHEBI:61668 biolink:NamedThing oroxylin A monarch-merged.owl owl:Class CHEBI:61670 biolink:NamedThing oroxylin A 7-O-beta-D-glucuronide monarch-merged.owl owl:Class CHEBI:82684 biolink:NamedThing 7-O-methylvitexin 2''-O-beta-L-rhamnoside monarch-merged.owl owl:Class CHEBI:38686 biolink:NamedThing dihydroxyflavone monarch-merged.owl owl:Class CHEBI:132818 biolink:NamedThing apigenin 7-O-beta-L-glucoside monarch-merged.owl owl:Class CHEBI:15932 biolink:NamedThing apiin monarch-merged.owl owl:Class CHEBI:16557 biolink:NamedThing quercetin 3,3',7-trissulfate monarch-merged.owl owl:Class CHEBI:16778 biolink:NamedThing apigenin 7-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:27825 biolink:NamedThing 3',5-dihydroxy-3,4',7-trimethoxyflavone monarch-merged.owl owl:Class CHEBI:2981 biolink:NamedThing baicalin monarch-merged.owl owl:Class CHEBI:37645 biolink:NamedThing luteolin 7-O-[(beta-D-glucosyluronic acid)-(1->2)-(beta-D-glucosiduronic acid)] 4'-O-beta-D-glucosiduronic acid monarch-merged.owl owl:Class CHEBI:543745 biolink:NamedThing 3',4',5'-O-trimethyltricetin monarch-merged.owl owl:Class CHEBI:10049 biolink:NamedThing XTP monarch-merged.owl owl:Class CHEBI:37045 biolink:NamedThing purine ribonucleoside 5'-triphosphate monarch-merged.owl purine ribonucleoside 5'-triphosphates chebi_ontology owl:Class CHEBI:15422 biolink:NamedThing ATP An adenosine 5'-phosphate in which the 5'-phosphate is a triphosphate group. It is involved in the transportation of chemical energy during metabolic pathways. monarch-merged.owl Adenosine triphosphate|adenosine 5'-(tetrahydrogen triphosphate)|ATP|Adenosine 5'-triphosphate|ADENOSINE-5'-TRIPHOSPHATE|H4atp 0 C10H16N5O13P3 InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 ZKHQWZAMYRWXGA-KQYNXXCUSA-N 507.18100 506.99575 Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O CAS:56-65-5|HMDB:HMDB0000538|Gmelin:34857|Wikipedia:Adenosine_triphosphate|Reaxys:73010|KEGG:D08646|KNApSAcK:C00001491|Beilstein:73010|Patent:US3079379|DrugBank:DB00171|KEGG:C00002|PDBeChem:ATP|Drug_Central:91 CHEBI:22249|CHEBI:2359|CHEBI:10789|CHEBI:13236|CHEBI:40938|CHEBI:10841 chebi_ontology owl:Class CHEBI:15996 biolink:NamedThing GTP monarch-merged.owl owl:Class CHEBI:16039 biolink:NamedThing ITP monarch-merged.owl owl:Class CHEBI:237958 biolink:NamedThing ({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate monarch-merged.owl chebi_ontology owl:Class CHEBI:71679 biolink:NamedThing N(6)-(dimethylallyl)adenosine 5'-triphosphate monarch-merged.owl owl:Class CHEBI:71938 biolink:NamedThing 9-ribosyl-trans-zeatin 5'-triphosphate monarch-merged.owl owl:Class CHEBI:53012 biolink:NamedThing xanthosine 5'-phosphate monarch-merged.owl owl:Class CHEBI:15652 biolink:NamedThing 5'-xanthylic acid monarch-merged.owl owl:Class CHEBI:59885 biolink:NamedThing XTP(3-) monarch-merged.owl owl:Class CHEBI:10106 biolink:NamedThing zearalenone monarch-merged.owl owl:Class CHEBI:25106 biolink:NamedThing macrolide A macrocyclic lactone with a ring of twelve or more members derived from a polyketide. monarch-merged.owl macrolides|macrolide|Makrolid Wikipedia:Macrolide chebi_ontology owl:Class CHEBI:145555 biolink:NamedThing macropolylide monarch-merged.owl owl:Class CHEBI:145565 biolink:NamedThing macrolide lactam monarch-merged.owl owl:Class CHEBI:23955 biolink:NamedThing erythronolide monarch-merged.owl owl:Class CHEBI:25022 biolink:NamedThing leucomycin monarch-merged.owl owl:Class CHEBI:25105 biolink:NamedThing macrolide antibiotic A macrocyclic lactone with a ring of twelve or more members which exhibits antibiotic activity. monarch-merged.owl Makrolidantibiotika|macrolide antibiotics chebi_ontology owl:Class CHEBI:25661 biolink:NamedThing oleandomycins monarch-merged.owl owl:Class CHEBI:29461 biolink:NamedThing 10-deoxymethynolide monarch-merged.owl owl:Class CHEBI:29613 biolink:NamedThing 3-O-(alpha-L-oleandrosyl)oleandolide monarch-merged.owl owl:Class CHEBI:29614 biolink:NamedThing 3-O-(alpha-L-olivosyl)oleandolide monarch-merged.owl owl:Class CHEBI:50344 biolink:NamedThing avermectin Any of the macrolides obtained as fermentation products from the bacterium Streptomyces avermitilis and consisting of a 16-membered macrocyclic backbone that is fused both benzofuran and spiroketal functions and contains a disaccharide substituent. They have significant anthelmintic and insecticidal properties. monarch-merged.owl avermectin|avermectins PMID:8688633|PMID:22039799|PMID:23165468|PMID:22039784|Wikipedia:Avermectin|PMID:22542398 chebi_ontology owl:Class CHEBI:60831 biolink:NamedThing epothilone monarch-merged.owl owl:Class CHEBI:33572 biolink:NamedThing resorcinols monarch-merged.owl owl:Class CHEBI:132131 biolink:NamedThing 3,5-dimethylorsellinic acid monarch-merged.owl owl:Class CHEBI:134269 biolink:NamedThing 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one monarch-merged.owl owl:Class CHEBI:139593 biolink:NamedThing 4-O-methylxanthohumol monarch-merged.owl owl:Class CHEBI:18131 biolink:NamedThing licodione monarch-merged.owl owl:Class CHEBI:27810 biolink:NamedThing resorcinol monarch-merged.owl owl:Class CHEBI:27881 biolink:NamedThing resveratrol monarch-merged.owl owl:Class CHEBI:29474 biolink:NamedThing (S)-3,5-dihydroxyphenylglycine monarch-merged.owl owl:Class CHEBI:31104 biolink:NamedThing 3,5-dihydroxyphenylglyoxylic acid monarch-merged.owl owl:Class CHEBI:32807 biolink:NamedThing o-orsellinic acid monarch-merged.owl owl:Class CHEBI:3359 biolink:NamedThing cannabidiolic acid monarch-merged.owl owl:Class CHEBI:4579 biolink:NamedThing dihydropinosylvin monarch-merged.owl owl:Class CHEBI:52679 biolink:NamedThing 5-alkylresorcinol monarch-merged.owl owl:Class CHEBI:52731 biolink:NamedThing 5-alkatrienylresorcinol monarch-merged.owl owl:Class CHEBI:64417 biolink:NamedThing violaceol II monarch-merged.owl owl:Class CHEBI:64598 biolink:NamedThing 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one monarch-merged.owl owl:Class CHEBI:66960 biolink:NamedThing olivetol monarch-merged.owl owl:Class CHEBI:67080 biolink:NamedThing cannabinerolic acid monarch-merged.owl owl:Class CHEBI:67081 biolink:NamedThing cannabigerolic acid monarch-merged.owl owl:Class CHEBI:67375 biolink:NamedThing noreugenin monarch-merged.owl owl:Class CHEBI:87804 biolink:NamedThing 3,3',5-trihydroxybibenzyl monarch-merged.owl owl:Class CHEBI:10115 biolink:NamedThing zingiberene monarch-merged.owl owl:Class CHEBI:35189 biolink:NamedThing sesquiterpene monarch-merged.owl owl:Class CHEBI:10216 biolink:NamedThing cedr-8-ene monarch-merged.owl owl:Class CHEBI:10221 biolink:NamedThing alpha-copaene monarch-merged.owl owl:Class CHEBI:10363 biolink:NamedThing beta-cubebene monarch-merged.owl owl:Class CHEBI:10440 biolink:NamedThing (-)-beta-santalene monarch-merged.owl owl:Class CHEBI:132832 biolink:NamedThing (+)-alpha-gurjunene monarch-merged.owl owl:Class CHEBI:137530 biolink:NamedThing (2S,3R,6S,9S)-(-)-protoillud-7-ene monarch-merged.owl owl:Class CHEBI:137531 biolink:NamedThing (3S)-(+)-asterisca-2(9),6-diene monarch-merged.owl owl:Class CHEBI:137562 biolink:NamedThing (+)-eremophilene monarch-merged.owl owl:Class CHEBI:137563 biolink:NamedThing (1R,4R,5S)-(-)-guaia-6,10(14)-diene monarch-merged.owl owl:Class CHEBI:138049 biolink:NamedThing guaia-4,6-diene monarch-merged.owl owl:Class CHEBI:138051 biolink:NamedThing selina-4(15),7(11)-diene monarch-merged.owl owl:Class CHEBI:142091 biolink:NamedThing (-)-eremophilene monarch-merged.owl owl:Class CHEBI:15861 biolink:NamedThing trichodiene monarch-merged.owl owl:Class CHEBI:17251 biolink:NamedThing pentalenene monarch-merged.owl owl:Class CHEBI:22976 biolink:NamedThing cadinene monarch-merged.owl owl:Class CHEBI:23925 biolink:NamedThing (+)-5-epi-aristolochene monarch-merged.owl owl:Class CHEBI:36474 biolink:NamedThing drimane monarch-merged.owl owl:Class CHEBI:36480 biolink:NamedThing bisabolane monarch-merged.owl owl:Class CHEBI:36513 biolink:NamedThing cadinane monarch-merged.owl owl:Class CHEBI:36514 biolink:NamedThing germacrane monarch-merged.owl owl:Class CHEBI:36517 biolink:NamedThing germacrene A monarch-merged.owl owl:Class CHEBI:36521 biolink:NamedThing eremophilane monarch-merged.owl owl:Class CHEBI:36522 biolink:NamedThing eudesmane monarch-merged.owl owl:Class CHEBI:36523 biolink:NamedThing humulane monarch-merged.owl owl:Class CHEBI:36529 biolink:NamedThing aristolochene monarch-merged.owl owl:Class CHEBI:36530 biolink:NamedThing cedrane monarch-merged.owl owl:Class CHEBI:36534 biolink:NamedThing 2,6,10-trimethyldodeca-2,6,10-triene monarch-merged.owl owl:Class CHEBI:36743 biolink:NamedThing germacrene monarch-merged.owl owl:Class CHEBI:36754 biolink:NamedThing vetispirane monarch-merged.owl owl:Class CHEBI:36756 biolink:NamedThing farnesane monarch-merged.owl owl:Class CHEBI:39237 biolink:NamedThing farnesene monarch-merged.owl owl:Class CHEBI:46971 biolink:NamedThing premnaspirodiene monarch-merged.owl owl:Class CHEBI:49206 biolink:NamedThing (1xi,4xi,5xi)-guaia-6,9-diene monarch-merged.owl owl:Class CHEBI:49209 biolink:NamedThing himachalene monarch-merged.owl owl:Class CHEBI:49231 biolink:NamedThing sibirene monarch-merged.owl owl:Class CHEBI:49235 biolink:NamedThing bisabolene monarch-merged.owl owl:Class CHEBI:49272 biolink:NamedThing selinene monarch-merged.owl owl:Class CHEBI:49289 biolink:NamedThing humulene monarch-merged.owl owl:Class CHEBI:51458 biolink:NamedThing (+)-epi-isozizaene monarch-merged.owl owl:Class CHEBI:52026 biolink:NamedThing amorpha-4,11-diene monarch-merged.owl owl:Class CHEBI:583099 biolink:NamedThing ent-zingiberene monarch-merged.owl owl:Class CHEBI:61344 biolink:NamedThing (S)-beta-macrocarpene monarch-merged.owl owl:Class CHEBI:61478 biolink:NamedThing germacrene C monarch-merged.owl owl:Class CHEBI:61677 biolink:NamedThing (+)-alpha-santalene monarch-merged.owl owl:Class CHEBI:61678 biolink:NamedThing (+)-endo-beta-bergamotene monarch-merged.owl owl:Class CHEBI:61685 biolink:NamedThing (+)-cubenene monarch-merged.owl owl:Class CHEBI:61687 biolink:NamedThing cis-muurola-3,5-diene monarch-merged.owl owl:Class CHEBI:61688 biolink:NamedThing cis-muurola-4(14),5-diene monarch-merged.owl owl:Class CHEBI:61690 biolink:NamedThing (+)-alpha-barbatene monarch-merged.owl owl:Class CHEBI:61699 biolink:NamedThing (-)-alpha-gurjunene monarch-merged.owl owl:Class CHEBI:61700 biolink:NamedThing (+)-valencene monarch-merged.owl owl:Class CHEBI:61736 biolink:NamedThing thujopsene monarch-merged.owl owl:Class CHEBI:61744 biolink:NamedThing beta-chamigrene monarch-merged.owl owl:Class CHEBI:62753 biolink:NamedThing alpha-longipinene monarch-merged.owl owl:Class CHEBI:62755 biolink:NamedThing alpha-bergamotene monarch-merged.owl owl:Class CHEBI:62759 biolink:NamedThing beta-curcumene monarch-merged.owl owl:Class CHEBI:62762 biolink:NamedThing (+)-2-epi-prezizaene monarch-merged.owl owl:Class CHEBI:63191 biolink:NamedThing beta-caryophyllene monarch-merged.owl owl:Class CHEBI:63443 biolink:NamedThing alpha-guaiene monarch-merged.owl owl:Class CHEBI:63444 biolink:NamedThing viridiflorene monarch-merged.owl owl:Class CHEBI:63447 biolink:NamedThing delta-guaiene monarch-merged.owl owl:Class CHEBI:63696 biolink:NamedThing gamma-curcumene monarch-merged.owl owl:Class CHEBI:63701 biolink:NamedThing (-)-alpha-cuprenene monarch-merged.owl owl:Class CHEBI:63709 biolink:NamedThing bicyclogermacrene monarch-merged.owl owl:Class CHEBI:63710 biolink:NamedThing 7-epi-sesquithujene monarch-merged.owl owl:Class CHEBI:63711 biolink:NamedThing sesquithujene monarch-merged.owl owl:Class CHEBI:64361 biolink:NamedThing beta-sesquiphellandrene monarch-merged.owl owl:Class CHEBI:64797 biolink:NamedThing alpha-muurolene monarch-merged.owl owl:Class CHEBI:64798 biolink:NamedThing gamma-muurolene monarch-merged.owl owl:Class CHEBI:64799 biolink:NamedThing beta-copaene monarch-merged.owl owl:Class CHEBI:64800 biolink:NamedThing sativene monarch-merged.owl owl:Class CHEBI:6530 biolink:NamedThing longifolene monarch-merged.owl owl:Class CHEBI:68625 biolink:NamedThing valerena-4,7(11)-diene monarch-merged.owl owl:Class CHEBI:68655 biolink:NamedThing Delta(6)-protoilludene monarch-merged.owl owl:Class CHEBI:68666 biolink:NamedThing (-)-alpha-isocomene monarch-merged.owl owl:Class CHEBI:68667 biolink:NamedThing (E)-2-epi-beta-caryophyllene monarch-merged.owl owl:Class CHEBI:71688 biolink:NamedThing 7-epi-zingiberene monarch-merged.owl owl:Class CHEBI:74322 biolink:NamedThing 4,8,12-trimethyltrideca 1,3,7,11-tetraene monarch-merged.owl owl:Class CHEBI:37613 biolink:NamedThing cyclohexadiene monarch-merged.owl owl:Class CHEBI:10334 biolink:NamedThing alpha-terpinene monarch-merged.owl owl:Class CHEBI:10577 biolink:NamedThing gamma-terpinene monarch-merged.owl owl:Class CHEBI:22899 biolink:NamedThing bisdechlorogeodin monarch-merged.owl owl:Class CHEBI:23466 biolink:NamedThing cyclohexadienecarboxylate monarch-merged.owl owl:Class CHEBI:23469 biolink:NamedThing cyclohexadienediol monarch-merged.owl owl:Class CHEBI:36194 biolink:NamedThing cyclohexadienedicarboxylic acid monarch-merged.owl owl:Class CHEBI:37610 biolink:NamedThing cyclohexa-1,3-diene monarch-merged.owl owl:Class CHEBI:37611 biolink:NamedThing cyclohexa-1,4-diene monarch-merged.owl owl:Class CHEBI:513 biolink:NamedThing 1,3,4,6-tetrachlorocyclohexa-1,4-diene monarch-merged.owl owl:Class CHEBI:64801 biolink:NamedThing (R)-tetraprenyl-beta-curcumene monarch-merged.owl owl:Class CHEBI:10119 biolink:NamedThing ziprasidone monarch-merged.owl owl:Class CHEBI:24829 biolink:NamedThing indolones monarch-merged.owl owl:Class CHEBI:24793 biolink:NamedThing indoledione monarch-merged.owl owl:Class CHEBI:38459 biolink:NamedThing oxindoles monarch-merged.owl owl:Class CHEBI:51625 biolink:NamedThing indolinone monarch-merged.owl owl:Class CHEBI:26144 biolink:NamedThing piperazines monarch-merged.owl chebi_ontology owl:Class CHEBI:46845 biolink:NamedThing N-alkylpiperazine monarch-merged.owl N-alkylpiperazines chebi_ontology owl:Class CHEBI:46846 biolink:NamedThing piperazinone monarch-merged.owl owl:Class CHEBI:46847 biolink:NamedThing N-iminopiperazine monarch-merged.owl owl:Class CHEBI:46848 biolink:NamedThing N-arylpiperazine monarch-merged.owl N-arylpiperazines chebi_ontology owl:Class CHEBI:46853 biolink:NamedThing piperazinecarboxamide monarch-merged.owl owl:Class CHEBI:48683 biolink:NamedThing piperazinecarboxylic acid monarch-merged.owl owl:Class CHEBI:36683 biolink:NamedThing organochlorine compound An organochlorine compound is a compound containing at least one carbon-chlorine bond. monarch-merged.owl organochlorine compounds|organochlorides|an organochlorine molecule|organochlorine compound|organochloride|organochloride compounds|chloroorganic compounds|chlororganische Verbindungen|organochloride compound 0 ClR 35.453 34.96885 *Cl MetaCyc:Chlorides|Wikipedia:Organochloride chebi_ontology owl:Class CHEBI:133917 biolink:NamedThing ochratoxin alpha monarch-merged.owl owl:Class CHEBI:135511 biolink:NamedThing rebeccamycin monarch-merged.owl owl:Class CHEBI:136492 biolink:NamedThing N-(2,6-diethylphenyl)-2-chloroacetamide monarch-merged.owl owl:Class CHEBI:136494 biolink:NamedThing N-(2-ethyl-6-methylphenyl)-2-chloroacetamide monarch-merged.owl owl:Class CHEBI:139481 biolink:NamedThing 5-chloro-L-tryptophan monarch-merged.owl owl:Class CHEBI:140077 biolink:NamedThing 6-chloro-L-tryptophan monarch-merged.owl owl:Class CHEBI:140086 biolink:NamedThing 6,7-dichloro-L-tryptophan monarch-merged.owl owl:Class CHEBI:140516 biolink:NamedThing 6-chlorotryptophan monarch-merged.owl owl:Class CHEBI:15885 biolink:NamedThing L-2-amino-4-chloropent-4-enoic acid monarch-merged.owl owl:Class CHEBI:16106 biolink:NamedThing 2,4-dichloro-5-oxo-2,5-dihydro-2-furylacetic acid monarch-merged.owl owl:Class CHEBI:17147 biolink:NamedThing 5-amino-4-chloro-2-(2,3-dihydroxyphenyl)pyridazin-3(2H)-one monarch-merged.owl owl:Class CHEBI:17184 biolink:NamedThing chlordecone alcohol monarch-merged.owl owl:Class CHEBI:17337 biolink:NamedThing (2-chloro-5-oxo-2,5-dihydro-2-furyl)acetic acid monarch-merged.owl owl:Class CHEBI:17698 biolink:NamedThing chloramphenicol monarch-merged.owl owl:Class CHEBI:17881 biolink:NamedThing 5-amino-4-chloro-2-(2-hydroxymuconoyl)pyridazin-3(2H)-one monarch-merged.owl owl:Class CHEBI:18917 biolink:NamedThing 1,3-dichloropropan-2-ol monarch-merged.owl owl:Class CHEBI:19503 biolink:NamedThing propachlor monarch-merged.owl owl:Class CHEBI:23115 biolink:NamedThing chlorohydrocarbon monarch-merged.owl owl:Class CHEBI:23128 biolink:NamedThing chloroalkane monarch-merged.owl owl:Class CHEBI:23129 biolink:NamedThing chloroamino acid monarch-merged.owl owl:Class CHEBI:23132 biolink:NamedThing chlorobenzenes Any organochlorine compound containing a benzene ring which is substituted by one or more chlorines. monarch-merged.owl owl:Class CHEBI:23136 biolink:NamedThing chlorobenzoyl-CoA monarch-merged.owl owl:Class CHEBI:23140 biolink:NamedThing chlorodienelactone monarch-merged.owl owl:Class CHEBI:23141 biolink:NamedThing chloroethanol monarch-merged.owl owl:Class CHEBI:2394 biolink:NamedThing acetochlor monarch-merged.owl owl:Class CHEBI:2533 biolink:NamedThing alachlor monarch-merged.owl owl:Class CHEBI:2639 biolink:NamedThing amiloride monarch-merged.owl owl:Class CHEBI:27871 biolink:NamedThing chloroacetaldehyde monarch-merged.owl owl:Class CHEBI:28975 biolink:NamedThing 2,5-dichloro-2,5-cyclohexadiene-1,4-diol monarch-merged.owl owl:Class CHEBI:28989 biolink:NamedThing 2,4,5-trichlorocyclohexa-2,5-dien-1-ol monarch-merged.owl owl:Class CHEBI:29505 biolink:NamedThing A47934 monarch-merged.owl owl:Class CHEBI:3230 biolink:NamedThing butachlor monarch-merged.owl owl:Class CHEBI:330772 biolink:NamedThing dichloroarcyriaflavin A monarch-merged.owl owl:Class CHEBI:3638 biolink:NamedThing chloroquine An aminoquinoline that is quinoline which is substituted at position 4 by a [5-(diethylamino)pentan-2-yl]amino group at at position 7 by chlorine. It is used for the treatment of malaria, hepatic amoebiasis, lupus erythematosus, light-sensitive skin eruptions, and rheumatoid arthritis. monarch-merged.owl Aralen|Chlorochin|Resoquine|chloroquine|chloroquinum|N(4)-(7-chloro-4-quinolinyl)-N(1),N(1)-diethyl-1,4-pentanediamine|N(4)-(7-chloroquinolin-4-yl)-N(1),N(1)-diethylpentane-1,4-diamine|Sanoquin|Capquin|cloroquina|Chloroquine|Reumachlor|Bemaphate|Nivaquine B|Artrichin 0 C18H26ClN3 InChI=1S/C18H26ClN3/c1-4-22(5-2)12-6-7-14(3)21-17-10-11-20-18-13-15(19)8-9-16(17)18/h8-11,13-14H,4-7,12H2,1-3H3,(H,20,21) WHTVZRBIWZFKQO-UHFFFAOYSA-N 319.87200 319.18153 CCN(CC)CCCC(C)Nc1ccnc2cc(Cl)ccc12 Patent:DE683692|PMID:23706562|PDBeChem:CLQ|Wikipedia:Chloroquine|KEGG:D02366|PMID:25285162|Reaxys:482809|PMID:23288916|PMID:23580861|Drug_Central:607|PMID:19426658|Gmelin:781126|PMID:23635029|PMID:17594118|Beilstein:482809|PMID:23891850|HMDB:HMDB0014746|KEGG:C07625|Patent:US2233970|CAS:54-05-7|DrugBank:DB00608|PMID:23852712|PMID:18052874|PMID:11198399|PMID:23644906|LINCS:LSM-1901 chebi_ontology owl:Class CHEBI:36682 biolink:NamedThing polychlorinated dibenzodioxine monarch-merged.owl owl:Class CHEBI:36685 biolink:NamedThing chlorocarboxylic acid A carboxylic acid containing at least one chloro group. monarch-merged.owl chlorocarboxylic acids owl:Class CHEBI:36687 biolink:NamedThing acyl chloride monarch-merged.owl owl:Class CHEBI:36703 biolink:NamedThing tetrachloro-1,4-benzoquinone monarch-merged.owl owl:Class CHEBI:3766 biolink:NamedThing clozapine monarch-merged.owl owl:Class CHEBI:38168 biolink:NamedThing chloro-1,3,5-triazine monarch-merged.owl owl:Class CHEBI:38411 biolink:NamedThing chlorocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:38656 biolink:NamedThing organochlorine pesticide monarch-merged.owl owl:Class CHEBI:39161 biolink:NamedThing 1,1,1-trichloro-2,2-diphenylethane monarch-merged.owl owl:Class CHEBI:39173 biolink:NamedThing chloropyridine monarch-merged.owl owl:Class CHEBI:39226 biolink:NamedThing chlorocarbon monarch-merged.owl owl:Class CHEBI:39308 biolink:NamedThing 3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylic acid monarch-merged.owl owl:Class CHEBI:4027 biolink:NamedThing cyclophosphamide monarch-merged.owl owl:Class CHEBI:47291 biolink:NamedThing 3-chloro-D-alanine zwitterion monarch-merged.owl owl:Class CHEBI:47395 biolink:NamedThing devancoaminyl vancomycin monarch-merged.owl owl:Class CHEBI:4792 biolink:NamedThing enflurane An ether in which the oxygen atom is connected to 2-chloro-1,1,2-trifluoroethyl and difluoromethyl groups. monarch-merged.owl Ethrane|2-chloro-1,1,2-trifluoroethyl difluoromethyl ether|Alyrane|Methylflurether|2-chloro-1-(difluoromethoxy)-1,1,2-trifluoroethane|Efrane|Enflurane 0 C3H2ClF5O InChI=1S/C3H2ClF5O/c4-1(5)3(8,9)10-2(6)7/h1-2H JPGQOUSTVILISH-UHFFFAOYSA-N 184.49210 183.97143 FC(F)OC(F)(F)C(F)Cl PMID:7457058|PMID:23934553|Patent:US5783199|PMID:25386744|Patent:AU2014277860|CAS:13838-16-9|Reaxys:1903921|Drug_Central:1009|Beilstein:1903921|KEGG:C07516|HMDB:HMDB0014373|KEGG:D00543|DrugBank:DB00228|Wikipedia:Enflurane chebi_ontology owl:Class CHEBI:48985 biolink:NamedThing 8-chloroquinoline monarch-merged.owl owl:Class CHEBI:48990 biolink:NamedThing 8-chloroquinolin-2(1H)-one monarch-merged.owl owl:Class CHEBI:49575 biolink:NamedThing diazepam monarch-merged.owl owl:Class CHEBI:49603 biolink:NamedThing lapatinib monarch-merged.owl owl:Class CHEBI:55354 biolink:NamedThing 7-chlorotryptophan monarch-merged.owl owl:Class CHEBI:5615 biolink:NamedThing halothane A haloalkane comprising ethane having three flouro substituents at the 1-position as well as bromo- and chloro substituents at the 2-position. monarch-merged.owl 2-bromo-2-chloro-1,1,1-trifluoroethane|Narcotane|Fluothane|Halothane|Phthorothanum|2,2,2-trifluoro-1-chloro-1-bromoethane|1,1,1-trifluoro-2-bromo-2-chloroethane|1-bromo-1-chloro-2,2,2-trifluoroethane|Rhodialothan|bromochlorotrifluoroethane|1,1,1-trifluoro-2-chloro-2-bromoethane 0 C2HBrClF3 InChI=1S/C2HBrClF3/c3-1(4)2(5,6)7/h1H BCQZXOMGPXTTIC-UHFFFAOYSA-N 197.38125 195.89022 [H]C(Cl)(Br)C(F)(F)F Wikipedia:Halothane|Beilstein:1736947|KEGG:D00542|Gmelin:793752|Drug_Central:1356|KEGG:C07515|PMID:7519986|VSDB:1806|DrugBank:DB01159|CAS:151-67-7 chebi_ontology owl:Class CHEBI:57641 biolink:NamedThing 2,4-dichloro-5-oxo-2,5-dihydro-2-furylacetate monarch-merged.owl owl:Class CHEBI:595389 biolink:NamedThing 4'-demethylrebeccamycin monarch-merged.owl owl:Class CHEBI:64672 biolink:NamedThing differentiation-inducing factor monarch-merged.owl owl:Class CHEBI:75320 biolink:NamedThing 2-amino-5-chloro-cis,cis-muconic 6-semialdehyde monarch-merged.owl owl:Class CHEBI:76058 biolink:NamedThing chloroorienticin B monarch-merged.owl owl:Class CHEBI:77036 biolink:NamedThing A41030A monarch-merged.owl owl:Class CHEBI:7719 biolink:NamedThing ochratoxin A monarch-merged.owl owl:Class CHEBI:8028 biolink:NamedThing perphenazine monarch-merged.owl owl:Class CHEBI:88164 biolink:NamedThing 3-chloroalanine monarch-merged.owl owl:Class CHEBI:55505 biolink:NamedThing 1,2-benzisothiazole monarch-merged.owl owl:Class CHEBI:1015 biolink:NamedThing 2-aminobenzenesulfonic acid monarch-merged.owl owl:Class CHEBI:33557 biolink:NamedThing aminobenzenesulfonic acid monarch-merged.owl owl:Class CHEBI:10213 biolink:NamedThing alpha-amyrin monarch-merged.owl owl:Class CHEBI:25872 biolink:NamedThing pentacyclic triterpenoid monarch-merged.owl owl:Class CHEBI:10352 biolink:NamedThing beta-amyrin monarch-merged.owl owl:Class CHEBI:138945 biolink:NamedThing maniladiol monarch-merged.owl owl:Class CHEBI:138955 biolink:NamedThing daturadiol monarch-merged.owl owl:Class CHEBI:140655 biolink:NamedThing 16alpha-hydroxy-beta-amyrin monarch-merged.owl owl:Class CHEBI:16317 biolink:NamedThing 3alpha-hydroxyglycyrrhetinic acid monarch-merged.owl owl:Class CHEBI:16404 biolink:NamedThing 3-oxoglycyrrhetinic acid monarch-merged.owl owl:Class CHEBI:16653 biolink:NamedThing cycloeucalenol monarch-merged.owl owl:Class CHEBI:17030 biolink:NamedThing cycloartenol monarch-merged.owl owl:Class CHEBI:30853 biolink:NamedThing glycyrrhetinic acid monarch-merged.owl owl:Class CHEBI:36484 biolink:NamedThing hopan-22-ol monarch-merged.owl owl:Class CHEBI:37659 biolink:NamedThing oleanolic acid monarch-merged.owl owl:Class CHEBI:5171 biolink:NamedThing friedelin monarch-merged.owl owl:Class CHEBI:62262 biolink:NamedThing isomultiflorenol monarch-merged.owl owl:Class CHEBI:62440 biolink:NamedThing soyasapogenol A monarch-merged.owl owl:Class CHEBI:62455 biolink:NamedThing germanicol monarch-merged.owl owl:Class CHEBI:62458 biolink:NamedThing sophoradiol monarch-merged.owl owl:Class CHEBI:62459 biolink:NamedThing 24-hydroxy-beta-amyrin monarch-merged.owl owl:Class CHEBI:62735 biolink:NamedThing lupan-3beta,20-diol monarch-merged.owl owl:Class CHEBI:62867 biolink:NamedThing soyasaponin III monarch-merged.owl owl:Class CHEBI:63177 biolink:NamedThing 11alpha-hydroxy-beta-amyrin monarch-merged.owl owl:Class CHEBI:63184 biolink:NamedThing 11-oxo-beta-amyrin monarch-merged.owl owl:Class CHEBI:63462 biolink:NamedThing glutinol monarch-merged.owl owl:Class CHEBI:63463 biolink:NamedThing baccharis oxide monarch-merged.owl owl:Class CHEBI:63467 biolink:NamedThing delta-amyrin monarch-merged.owl owl:Class CHEBI:6570 biolink:NamedThing lupeol monarch-merged.owl owl:Class CHEBI:69579 biolink:NamedThing hederagenin monarch-merged.owl owl:Class CHEBI:71531 biolink:NamedThing gypsogenic acid monarch-merged.owl owl:Class CHEBI:71576 biolink:NamedThing 30-hydroxy-11-oxo-beta-amyrin monarch-merged.owl owl:Class CHEBI:71577 biolink:NamedThing glycyrrhetaldehyde monarch-merged.owl owl:Class CHEBI:74026 biolink:NamedThing 26-desglucoprotodioscin monarch-merged.owl owl:Class CHEBI:82827 biolink:NamedThing oleanolic aldehyde monarch-merged.owl owl:Class CHEBI:8588 biolink:NamedThing protodioscin monarch-merged.owl owl:Class CHEBI:9209 biolink:NamedThing soyasapogenol B monarch-merged.owl owl:Class CHEBI:9211 biolink:NamedThing soyasaponin I monarch-merged.owl owl:Class CHEBI:9402 biolink:NamedThing taraxerol monarch-merged.owl owl:Class CHEBI:9493 biolink:NamedThing tetrahymanol monarch-merged.owl owl:Class CHEBI:35681 biolink:NamedThing secondary alcohol A secondary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has two other carbon atoms attached to it. monarch-merged.owl a secondary alcohol|Secondary alcohol|R-CHOH-R'|secondary alcohols 0 CH2OR2 30.026 30.01056 *C(*)O KEGG:C00432|KEGG:C01612 CHEBI:13425|CHEBI:26617|CHEBI:58662|CHEBI:9077|CHEBI:8741|CHEBI:13686 chebi_ontology owl:Class CHEBI:1171 biolink:NamedThing 2-hydroxypropylphosphonic acid monarch-merged.owl owl:Class CHEBI:133941 biolink:NamedThing (3S,5R,10R,12S,14S,15R,16R)-3,5,10,14,15-pentahydroxy-12,16-dimethylicosan-2-one monarch-merged.owl owl:Class CHEBI:134396 biolink:NamedThing secondary allylic alcohol monarch-merged.owl owl:Class CHEBI:134407 biolink:NamedThing prostaglandin H3 monarch-merged.owl owl:Class CHEBI:134532 biolink:NamedThing 3-(omega-methylthio)alkylmalic acid monarch-merged.owl owl:Class CHEBI:136824 biolink:NamedThing mandelamide monarch-merged.owl owl:Class CHEBI:138037 biolink:NamedThing 10-epi-juneol monarch-merged.owl owl:Class CHEBI:138165 biolink:NamedThing (+)-(2S,3R,9R)-pristinol monarch-merged.owl owl:Class CHEBI:138202 biolink:NamedThing (13R)-S-glutathionyl-(14S)-hydroxy-(4Z,7Z,9E,11E,16Z,19Z)-docosahexaenoic acid monarch-merged.owl owl:Class CHEBI:138206 biolink:NamedThing (13R)-S-cysteinylglycinyl-(14S)-hydroxy-(4Z,7Z,9E,11E,16Z,19Z)-docosahexaenoic acid monarch-merged.owl owl:Class CHEBI:138209 biolink:NamedThing (13R)-S-cysteinyl-(14S)-hydroxy-(4Z,7Z,9E,11E,16Z,19Z)-docosahexaenoic acid monarch-merged.owl owl:Class CHEBI:138303 biolink:NamedThing alpha-onocerin monarch-merged.owl owl:Class CHEBI:138305 biolink:NamedThing (21S)-21,22-epoxypolypoda-8(26)-13,17-trien-3beta-ol monarch-merged.owl owl:Class CHEBI:138888 biolink:NamedThing (R)-3-hydroxy-4-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:138966 biolink:NamedThing 9beta-pimara-7,15-diene-3beta-ol monarch-merged.owl owl:Class CHEBI:138967 biolink:NamedThing ent-cassa-12,15-dien-2beta-ol monarch-merged.owl owl:Class CHEBI:138968 biolink:NamedThing ent-cassa-12,15-dien-2beta,3beta-diol monarch-merged.owl owl:Class CHEBI:138972 biolink:NamedThing 11alpha-hydroxycucurbitadienol monarch-merged.owl owl:Class CHEBI:138973 biolink:NamedThing 11-oxocucurbitadienol monarch-merged.owl owl:Class CHEBI:140471 biolink:NamedThing triricinolein monarch-merged.owl owl:Class CHEBI:142880 biolink:NamedThing 7,2'-dihydroxy-4'-methoxyisoflavanol monarch-merged.owl owl:Class CHEBI:143197 biolink:NamedThing culmorin monarch-merged.owl owl:Class CHEBI:15554 biolink:NamedThing prostaglandin H2 monarch-merged.owl owl:Class CHEBI:15650 biolink:NamedThing leukotriene E4 monarch-merged.owl owl:Class CHEBI:15771 biolink:NamedThing loganin monarch-merged.owl owl:Class CHEBI:15833 biolink:NamedThing sulcatol monarch-merged.owl owl:Class CHEBI:16147 biolink:NamedThing 11-O-demethyl-17-O-deacetylvindoline monarch-merged.owl owl:Class CHEBI:16697 biolink:NamedThing indan-1-ol monarch-merged.owl owl:Class CHEBI:16904 biolink:NamedThing fluoren-9-ol monarch-merged.owl owl:Class CHEBI:17229 biolink:NamedThing 5-(3-hydroxy-4-acetoxybut-1-ynyl)-2,2'-bithiophene monarch-merged.owl owl:Class CHEBI:17384 biolink:NamedThing 17-O-acetylnorajmaline monarch-merged.owl owl:Class CHEBI:17824 biolink:NamedThing propan-2-ol monarch-merged.owl owl:Class CHEBI:18099 biolink:NamedThing cyclohexanol An alcohol that consists of cyclohexane bearing a single hydroxy substituent. The parent of the class of cyclohexanols. monarch-merged.owl 1-Cyclohexanol|Hydroxycyclohexane|Hexahydrophenol|Hexalin|Cyclohexyl alcohol|Cyclohexanol|Hydrophenol|Cyclohexan-1-ol|cyclohexanol 0 C6H12O InChI=1S/C6H12O/c7-6-4-2-1-3-5-6/h6-7H,1-5H2 HPXRVTGHNJAIIH-UHFFFAOYSA-N 100.15888 100.08882 OC1CCCCC1 CAS:108-93-0|UM-BBD_compID:c0175|PMID:23825601|DrugBank:DB03703|MetaCyc:CYCLOHEXANOL|PDBeChem:CXL|Reaxys:906744|PMID:11682644|KEGG:C00854|Wikipedia:Cyclohexanol CHEBI:23471|CHEBI:4013|CHEBI:41739|CHEBI:14051 chebi_ontology owl:Class CHEBI:18362 biolink:NamedThing 17-O-deacetylvindoline monarch-merged.owl owl:Class CHEBI:19030 biolink:NamedThing 1-aminopropan-2-ol monarch-merged.owl owl:Class CHEBI:25187 biolink:NamedThing p-menthan-3-ol monarch-merged.owl owl:Class CHEBI:26337 biolink:NamedThing prostaglandins D monarch-merged.owl owl:Class CHEBI:28130 biolink:NamedThing 13,14-dihydro-Delta(12)-prostaglandin J2 monarch-merged.owl owl:Class CHEBI:28940 biolink:NamedThing calciol A hydroxy seco-steroid that is (5Z,7E)-9,10-secocholesta-5,7,10(19)-triene in which the pro-S hydrogen at position 3 has been replaced by a hydroxy group. It is the inactive form of vitamin D3, being hydroxylated in the liver to calcidiol (25-hydroxyvitamin D3), which is then further hydroxylated in the kidney to give calcitriol (1,25-dihydroxyvitamin D3), the active hormone. monarch-merged.owl (5Z,7E)-(3S)-9,10-secocholesta-5,7,10(19)-trien-3-ol|Delta-D|oleovitamin D3|colecalciferol|Cholecalciferol|activated 7-dehydrocholesterol|Vitamin D3|calciol|CC|(3beta,5Z,7E)-9,10-secocholesta-5,7,10(19)-trien-3-ol|(+)-vitamin D3|(3S,5Z,7E)-9,10-secocholesta-5,7,10(19)-trien-3-ol|vitamin D3|(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL 0 C27H44O InChI=1S/C27H44O/c1-19(2)8-6-9-21(4)25-15-16-26-22(10-7-17-27(25,26)5)12-13-23-18-24(28)14-11-20(23)3/h12-13,19,21,24-26,28H,3,6-11,14-18H2,1-2,4-5H3/b22-12+,23-13-/t21-,24+,25-,26+,27-/m1/s1 QYSXJUFSXHHAJI-YRZJJWOYSA-N 384.63766 384.33922 [H][C@@]1(CC[C@]2([H])[C@]1(C)CCC\C2=C/C=C1/C[C@@H](O)CCC1=C)[C@H](C)CCCC(C)C PMID:19817701|Reaxys:2339331|PPDB:160|KEGG:C05443|PMID:9627702|Beilstein:2339331|LIPID_MAPS_instance:LMST03020000|CAS:67-97-0|KEGG:D00188|DrugBank:DB00169|PMID:23964472|PMID:15876428|Drug_Central:2840|Gmelin:1267613|PDBeChem:VD3|Wikipedia:Cholecalciferol|LIPID_MAPS_instance:LMST03020001|PMID:17156784|HMDB:HMDB0000876 CHEBI:23170|CHEBI:46283|CHEBI:10008 chebi_ontology owl:Class CHEBI:30041 biolink:NamedThing taxa-4(20),11-dien-5alpha,13alpha-diol monarch-merged.owl owl:Class CHEBI:30887 biolink:NamedThing isocitric acid monarch-merged.owl owl:Class CHEBI:324935 biolink:NamedThing fumagillol monarch-merged.owl owl:Class CHEBI:32809 biolink:NamedThing 3-hydroxy-L-glutamic acid monarch-merged.owl owl:Class CHEBI:32811 biolink:NamedThing 4-hydroxy-L-glutamic acid monarch-merged.owl owl:Class CHEBI:34172 biolink:NamedThing 16alpha-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:36835 biolink:NamedThing 3alpha-hydroxy steroid monarch-merged.owl owl:Class CHEBI:36836 biolink:NamedThing 3beta-hydroxy steroid A 3-hydroxy steroid in which the 3-hydroxy substituent is in the beta-position. monarch-merged.owl a 3beta-hydroxysteroid|3beta-hydroxy steroids 0 C19H31OR 275.450 275.23749 C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CC[C@@H](C4)O)C PMID:12829805|MetaCyc:3-Beta-Hydroxysterols|KEGG:C02945|PMID:10535978 CHEBI:71195 chebi_ontology owl:Class CHEBI:50130 biolink:NamedThing monacolin L monarch-merged.owl owl:Class CHEBI:50215 biolink:NamedThing dihydrocarveol monarch-merged.owl owl:Class CHEBI:61307 biolink:NamedThing solavetivol monarch-merged.owl owl:Class CHEBI:62064 biolink:NamedThing butane-2,3-diol monarch-merged.owl owl:Class CHEBI:62416 biolink:NamedThing dammarenediol-II monarch-merged.owl owl:Class CHEBI:62417 biolink:NamedThing arabidiol monarch-merged.owl owl:Class CHEBI:62452 biolink:NamedThing camelliol C monarch-merged.owl owl:Class CHEBI:63464 biolink:NamedThing alpha-seco-amyrin monarch-merged.owl owl:Class CHEBI:63466 biolink:NamedThing beta-seco-amyrin monarch-merged.owl owl:Class CHEBI:63618 biolink:NamedThing pravastatin monarch-merged.owl owl:Class CHEBI:63662 biolink:NamedThing 11alpha-hydroxy-ent-cassa-12,15-diene monarch-merged.owl owl:Class CHEBI:63665 biolink:NamedThing 7beta-hydroxytaxusin monarch-merged.owl owl:Class CHEBI:63702 biolink:NamedThing avermitilol monarch-merged.owl owl:Class CHEBI:63712 biolink:NamedThing baruol monarch-merged.owl owl:Class CHEBI:63893 biolink:NamedThing 8-hydroxy-alpha-humulene monarch-merged.owl owl:Class CHEBI:63902 biolink:NamedThing (+)-thujan-3-ol monarch-merged.owl owl:Class CHEBI:63912 biolink:NamedThing 19-hydroxyprostaglandin H2 monarch-merged.owl owl:Class CHEBI:64807 biolink:NamedThing tetrahydrotyrosine monarch-merged.owl owl:Class CHEBI:64808 biolink:NamedThing tetrahydro-4-hydroxyphenylpyruvic acid monarch-merged.owl owl:Class CHEBI:64939 biolink:NamedThing 3,4-dihydro-4-hydroxyphenylpyruvic acid monarch-merged.owl owl:Class CHEBI:64942 biolink:NamedThing 3-(4-hydroxycyclohex-2-en-1-ylidene)pyruvic acid monarch-merged.owl owl:Class CHEBI:65084 biolink:NamedThing 2-hydroxyoctadecanal monarch-merged.owl owl:Class CHEBI:71224 biolink:NamedThing flavan-3,3',4',5,5',7-hexol monarch-merged.owl owl:Class CHEBI:71335 biolink:NamedThing (3R)-7,2'-dihydroxy-4'-methoxyisoflavanol monarch-merged.owl owl:Class CHEBI:72776 biolink:NamedThing kunzeaol monarch-merged.owl owl:Class CHEBI:73250 biolink:NamedThing gibberellin A1 methyl ester monarch-merged.owl owl:Class CHEBI:73253 biolink:NamedThing gibberellin A3 methyl ester monarch-merged.owl owl:Class CHEBI:73972 biolink:NamedThing (3S)-3-hydroxy-L-arginine monarch-merged.owl owl:Class CHEBI:7621 biolink:NamedThing norajmaline monarch-merged.owl owl:Class CHEBI:77265 biolink:NamedThing 3-sulfolactaldehyde monarch-merged.owl owl:Class CHEBI:78816 biolink:NamedThing 5-hydroxyhexan-2-one monarch-merged.owl owl:Class CHEBI:78954 biolink:NamedThing (omega-1)-hydroxy fatty acid A hydroxy fatty acid that is a straight-chain fatty acid in which one of the hydrogens attached to the carbon adjacent to the terminal methyl group (i.e. at the (omega-1) position) is replaced by a hydroxy group. monarch-merged.owl (omega-1)-hydroxy fatty acids chebi_ontology owl:Class CHEBI:79034 biolink:NamedThing monacolin J monarch-merged.owl owl:Class CHEBI:79350 biolink:NamedThing xi-progoitrin monarch-merged.owl owl:Class CHEBI:82801 biolink:NamedThing (1S,4E,8E,12E)-2,2,5,9,13-pentamethylcyclopentadeca-4,8,12-trien-1-ol monarch-merged.owl owl:Class CHEBI:84579 biolink:NamedThing 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydroinden-4-yl]propanoic acid monarch-merged.owl owl:Class CHEBI:84970 biolink:NamedThing (4R)-ipsdienol monarch-merged.owl owl:Class CHEBI:85166 biolink:NamedThing prostaglandin H2 2-glyceryl ester monarch-merged.owl owl:Class CHEBI:85208 biolink:NamedThing 12-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:85360 biolink:NamedThing L-dihydroanticapsin monarch-merged.owl owl:Class CHEBI:85474 biolink:NamedThing 4-hydroxy-6-(2-hydroxytridecyl)-pyran-2-one monarch-merged.owl owl:Class CHEBI:85475 biolink:NamedThing 4-hydroxy-6-(11-hydroxyheptadecyl)-pyran-2-one monarch-merged.owl owl:Class CHEBI:85490 biolink:NamedThing 4-hydroxy-6-(13-hydroxy-2-oxononadecyl)pyran-2-one monarch-merged.owl owl:Class CHEBI:85533 biolink:NamedThing trans-4-hydroxy-L-proline betaine monarch-merged.owl owl:Class CHEBI:85534 biolink:NamedThing cis-4-hydroxy-D-proline betaine monarch-merged.owl owl:Class CHEBI:85639 biolink:NamedThing (9Z)-12-hydroxyoctadec-9-enoic acid monarch-merged.owl owl:Class CHEBI:87123 biolink:NamedThing tulipalin B monarch-merged.owl owl:Class CHEBI:87605 biolink:NamedThing 6alpha-hydroxyestrone monarch-merged.owl owl:Class CHEBI:88123 biolink:NamedThing (R)-12-hydroxysqualene monarch-merged.owl owl:Class CHEBI:90233 biolink:NamedThing prostaglandin F2alpha 1-glyceryl ester monarch-merged.owl owl:Class CHEBI:90786 biolink:NamedThing 2-methyl-1-oxo-4-[(2E,6E)-farnesyl]-3,4-dihydroquinoline-3,4-diol monarch-merged.owl owl:Class CHEBI:91133 biolink:NamedThing prostaglandin H1 monarch-merged.owl owl:Class CHEBI:91135 biolink:NamedThing 19-hydroxyprostaglandin H1 monarch-merged.owl owl:Class CHEBI:35714 biolink:NamedThing polycyclic olefin monarch-merged.owl owl:Class CHEBI:137523 biolink:NamedThing (-)-spiroviolene monarch-merged.owl owl:Class CHEBI:137528 biolink:NamedThing tsukubadiene monarch-merged.owl owl:Class CHEBI:137533 biolink:NamedThing (-)-alpha-amorphene monarch-merged.owl owl:Class CHEBI:138039 biolink:NamedThing (3E,7E)-dolathalia-3,7,11-triene monarch-merged.owl owl:Class CHEBI:138047 biolink:NamedThing beta-thujene monarch-merged.owl owl:Class CHEBI:138048 biolink:NamedThing stellata-2,6,19-triene monarch-merged.owl owl:Class CHEBI:138050 biolink:NamedThing pseudolaratriene monarch-merged.owl owl:Class CHEBI:35990 biolink:NamedThing bridged compound monarch-merged.owl owl:Class CHEBI:140297 biolink:NamedThing 4'-O-demethylsordarin monarch-merged.owl owl:Class CHEBI:26343 biolink:NamedThing prostaglandins G monarch-merged.owl owl:Class CHEBI:26344 biolink:NamedThing prostaglandins H monarch-merged.owl owl:Class CHEBI:60584 biolink:NamedThing bicozamycin monarch-merged.owl owl:Class CHEBI:61987 biolink:NamedThing 2-methylisoborneol monarch-merged.owl owl:Class CHEBI:66953 biolink:NamedThing 5-oxo-1,2-campholide monarch-merged.owl owl:Class CHEBI:83433 biolink:NamedThing 3,6-anhydro-alpha-L-galactopyranose monarch-merged.owl owl:Class CHEBI:85165 biolink:NamedThing prostaglandin G2 2-glyceryl ester monarch-merged.owl owl:Class CHEBI:10223 biolink:NamedThing alpha-cryptoxanthin monarch-merged.owl owl:Class CHEBI:23045 biolink:NamedThing carotenol monarch-merged.owl owl:Class CHEBI:10362 biolink:NamedThing beta-cryptoxanthin monarch-merged.owl owl:Class CHEBI:138076 biolink:NamedThing 1,1'-dihydroxyneurosporene monarch-merged.owl owl:Class CHEBI:138077 biolink:NamedThing chloroxanthin monarch-merged.owl owl:Class CHEBI:138919 biolink:NamedThing meso-zeaxanthin monarch-merged.owl owl:Class CHEBI:27547 biolink:NamedThing zeaxanthin monarch-merged.owl owl:Class CHEBI:28838 biolink:NamedThing lutein monarch-merged.owl owl:Class CHEBI:35307 biolink:NamedThing epoxycarotenol monarch-merged.owl owl:Class CHEBI:35331 biolink:NamedThing rhodopin monarch-merged.owl owl:Class CHEBI:40968 biolink:NamedThing astaxanthin monarch-merged.owl owl:Class CHEBI:62481 biolink:NamedThing (3E)-3,4-didehydrorhodopin monarch-merged.owl owl:Class CHEBI:62505 biolink:NamedThing demethylspheroidene monarch-merged.owl owl:Class CHEBI:63065 biolink:NamedThing 1,1'-dihydroxy-1,1',2,2'-tetrahydrolycopene monarch-merged.owl owl:Class CHEBI:67228 biolink:NamedThing 15,15'-dihydroxy-beta-carotene monarch-merged.owl owl:Class CHEBI:91221 biolink:NamedThing 2-hydroxyspheroidene monarch-merged.owl owl:Class CHEBI:91223 biolink:NamedThing 2,2-dihydroxyspheroidene monarch-merged.owl owl:Class CHEBI:91227 biolink:NamedThing 2-hydroxyspirilloxanthin monarch-merged.owl owl:Class CHEBI:91228 biolink:NamedThing 2,2-dihydroxyspirilloxanthin monarch-merged.owl owl:Class CHEBI:91229 biolink:NamedThing 2'-hydroxy-2-oxospirilloxanthin monarch-merged.owl owl:Class CHEBI:91230 biolink:NamedThing 2',2'-dihydroxy-2-oxospirilloxanthin monarch-merged.owl owl:Class CHEBI:10275 biolink:NamedThing (9Z,11E,13E)-octadeca-9,11,13-trienoic acid monarch-merged.owl owl:Class CHEBI:38382 biolink:NamedThing 9,11,13-octadecatrienoic acid monarch-merged.owl owl:Class CHEBI:8638 biolink:NamedThing (9Z,11E,13Z)-octadecatrienoic acid monarch-merged.owl owl:Class CHEBI:10278 biolink:NamedThing alpha-eudesmol monarch-merged.owl owl:Class CHEBI:138397 biolink:NamedThing octahydronaphthalenes monarch-merged.owl owl:Class CHEBI:132906 biolink:NamedThing (-)-Tau-muurolol monarch-merged.owl owl:Class CHEBI:138040 biolink:NamedThing 7-epi-alpha-eudesmol monarch-merged.owl owl:Class CHEBI:138042 biolink:NamedThing tau-cadinol monarch-merged.owl owl:Class CHEBI:138313 biolink:NamedThing (+)-kolavelool monarch-merged.owl owl:Class CHEBI:138971 biolink:NamedThing drimendiol monarch-merged.owl owl:Class CHEBI:139033 biolink:NamedThing (-)-kolavenyl diphosphate monarch-merged.owl owl:Class CHEBI:139034 biolink:NamedThing (+)-kolavenyl diphosphate monarch-merged.owl owl:Class CHEBI:139480 biolink:NamedThing (+)-O-methylkolavelool monarch-merged.owl owl:Class CHEBI:14158 biolink:NamedThing dihydromonacolin L monarch-merged.owl owl:Class CHEBI:38229 biolink:NamedThing solanapyrone A monarch-merged.owl owl:Class CHEBI:50302 biolink:NamedThing terpentetriene monarch-merged.owl owl:Class CHEBI:50303 biolink:NamedThing terpentedienyl diphosphate monarch-merged.owl owl:Class CHEBI:52461 biolink:NamedThing elisabethatriene monarch-merged.owl owl:Class CHEBI:59961 biolink:NamedThing alpha-selinene monarch-merged.owl owl:Class CHEBI:61680 biolink:NamedThing (1S,4aS)-1,4a-dimethyl-1,2,3,4,4a,5,6,8a-octahydronaphthalene monarch-merged.owl owl:Class CHEBI:61686 biolink:NamedThing (+)-epicubenol monarch-merged.owl owl:Class CHEBI:62224 biolink:NamedThing (-)-7-epi-alpha-selinene monarch-merged.owl owl:Class CHEBI:63203 biolink:NamedThing (-)-gamma-cadinene monarch-merged.owl owl:Class CHEBI:63205 biolink:NamedThing (+)-gamma-cadinene monarch-merged.owl owl:Class CHEBI:63445 biolink:NamedThing 5-epi-alpha-selinene monarch-merged.owl owl:Class CHEBI:63461 biolink:NamedThing achilleol B monarch-merged.owl owl:Class CHEBI:63704 biolink:NamedThing (+)-Tau-muurolol monarch-merged.owl owl:Class CHEBI:64688 biolink:NamedThing artemisinic aldehyde monarch-merged.owl owl:Class CHEBI:64691 biolink:NamedThing (11R)-dihydroartemisinic aldehyde monarch-merged.owl owl:Class CHEBI:64783 biolink:NamedThing (+)-artemisinic alcohol monarch-merged.owl owl:Class CHEBI:82970 biolink:NamedThing dihydromonacolin L acid monarch-merged.owl owl:Class CHEBI:26878 biolink:NamedThing tertiary alcohol A tertiary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has three other carbon atoms attached to it. monarch-merged.owl tertiary alcohols|tertiary alcohol 0 C4H7OR3 71.09780 71.04969 OC(C[*])(C[*])C[*] chebi_ontology owl:Class CHEBI:10417 biolink:NamedThing beta-eudesmol monarch-merged.owl owl:Class CHEBI:131717 biolink:NamedThing 2-epi-valiolone monarch-merged.owl owl:Class CHEBI:131846 biolink:NamedThing 2-hydroxy-2-methylpropanal monarch-merged.owl owl:Class CHEBI:132750 biolink:NamedThing 2-methylbutan-2-ol monarch-merged.owl owl:Class CHEBI:132752 biolink:NamedThing 3-hydroxy-3-methylbut-1-ene monarch-merged.owl owl:Class CHEBI:134397 biolink:NamedThing tertiary allylic alcohol monarch-merged.owl owl:Class CHEBI:134530 biolink:NamedThing 2-(omega-methylthio)alkylmalic acid monarch-merged.owl owl:Class CHEBI:137343 biolink:NamedThing (R)-2-(phosphonomethyl)malic acid monarch-merged.owl owl:Class CHEBI:137485 biolink:NamedThing (3R)-1,2-didehydro-3-hydroxy-16-methoxy-2,3-dihydrotabersonine monarch-merged.owl owl:Class CHEBI:137522 biolink:NamedThing (+)-isoafricanol monarch-merged.owl owl:Class CHEBI:137565 biolink:NamedThing (3E,7E)-dolabella-3,7-dien-18-ol monarch-merged.owl owl:Class CHEBI:138041 biolink:NamedThing (+)-4-epi-cubebol monarch-merged.owl owl:Class CHEBI:138043 biolink:NamedThing (2E,6E)-hedycaryol monarch-merged.owl owl:Class CHEBI:138044 biolink:NamedThing (2Z,6E)-hedycaryol monarch-merged.owl owl:Class CHEBI:138045 biolink:NamedThing (-)-10-epi-cubebol monarch-merged.owl owl:Class CHEBI:138166 biolink:NamedThing nezukol monarch-merged.owl owl:Class CHEBI:138167 biolink:NamedThing 5-hydroxy-alpha-gurjunene monarch-merged.owl owl:Class CHEBI:138890 biolink:NamedThing peregrinol diphosphate monarch-merged.owl owl:Class CHEBI:139122 biolink:NamedThing (3R)-3-hydroxy-2,3-dihydrotabersonine monarch-merged.owl owl:Class CHEBI:139124 biolink:NamedThing (3R)-1,2-didehydro-3-hydroxy-2,3-dihydrotabersonine monarch-merged.owl owl:Class CHEBI:139592 biolink:NamedThing tertiary alpha-hydroxy ketone An alpha-hydroxy ketone in which the carbonyl group and the hydroxy group are linked by a carbon bearing two organyl groups. monarch-merged.owl tertiary alpha-hydroxy ketones|tertiary alpha-hydroxyketones|tertiary alpha-hydroxyketone|tertiary alpha-hydroxy-ketone|tertiary alpha-hydroxy-ketones 0 C2HO2R3 57.028 56.99765 C(C(=O)*)(O)(*)* chebi_ontology owl:Class CHEBI:142525 biolink:NamedThing 3-hydroxybutane-1,2,3-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:145550 biolink:NamedThing peregrinol monarch-merged.owl owl:Class CHEBI:16380 biolink:NamedThing vindoline monarch-merged.owl owl:Class CHEBI:16831 biolink:NamedThing 3-hydroxy-3-methylglutaric acid A dicarboxylic acid that is glutaric acid in which one of the two hydrogens at position 3 is substituted by a hydroxy group, while the other is substituted by a methyl group. It has been found to accumulate in urine of patients suffering from HMG-CoA lyase (3-hydroxy-3-methylglutaryl-CoA lyase, EC 4.1.3.4) deficiency. It occurs as a plant metabolite in Crotalaria dura. monarch-merged.owl 3-HYDROXY-3-METHYL-GLUTARIC ACID|beta-hydroxy-beta-methylglutaric acid|meglutolum|Dicrotalic acid|beta-Hydroxy-beta-methylglutaric acid|3-hydroxy-3-methylpentanedioic acid|(S)-Meglutol|3-Hydroxy-3-methylpentanedioic acid|(S)-3-Hydroxy-3-methylglutaric acid|meglutol 0 C6H10O5 InChI=1S/C6H10O5/c1-6(11,2-4(7)8)3-5(9)10/h11H,2-3H2,1H3,(H,7,8)(H,9,10) NPOAOTPXWNWTSH-UHFFFAOYSA-N 162.14060 162.05282 CC(O)(CC(O)=O)CC(O)=O PMID:17941049|PMID:6083597|Beilstein:1769194|PMID:4717513|PMID:3063529|DrugBank:DB04377|PMID:10916782|Reaxys:1769194|KNApSAcK:C00001187|Drug_Central:1670|HMDB:HMDB0000355|MetaCyc:CPD-547|PDBeChem:MAH|KEGG:C03761|KEGG:D04897|CAS:503-49-1|PMID:9658458 CHEBI:20043|CHEBI:11044|CHEBI:1524|CHEBI:18746|CHEBI:391|CHEBI:43804 chebi_ontology owl:Class CHEBI:16957 biolink:NamedThing deacetoxyvindoline monarch-merged.owl owl:Class CHEBI:17529 biolink:NamedThing kievitone hydrate monarch-merged.owl owl:Class CHEBI:17580 biolink:NamedThing linalool monarch-merged.owl owl:Class CHEBI:18430 biolink:NamedThing 3-hydroxy-16-methoxy-2,3-dihydrotabersonine monarch-merged.owl owl:Class CHEBI:27644 biolink:NamedThing chlortetracycline monarch-merged.owl owl:Class CHEBI:27656 biolink:NamedThing camptothecin monarch-merged.owl owl:Class CHEBI:29704 biolink:NamedThing valiolone monarch-merged.owl owl:Class CHEBI:31056 biolink:NamedThing 13-deoxycarminomycin monarch-merged.owl owl:Class CHEBI:31181 biolink:NamedThing aklavinone monarch-merged.owl owl:Class CHEBI:43129 biolink:NamedThing (+)-6a-hydroxymaackiain monarch-merged.owl owl:Class CHEBI:45895 biolink:NamedThing tert-butanol monarch-merged.owl owl:Class CHEBI:46081 biolink:NamedThing fluconazole monarch-merged.owl owl:Class CHEBI:4638 biolink:NamedThing diphenidol monarch-merged.owl owl:Class CHEBI:46734 biolink:NamedThing (1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol monarch-merged.owl owl:Class CHEBI:49080 biolink:NamedThing marmesin monarch-merged.owl owl:Class CHEBI:49388 biolink:NamedThing bacterioruberin monarch-merged.owl owl:Class CHEBI:50036 biolink:NamedThing (6aS,11aS)-4-dimethylallyl-3,6a,9-trihydroxypterocarpan monarch-merged.owl owl:Class CHEBI:50118 biolink:NamedThing (6aS,11aS)-2-dimethylallyl-3,6a,9-trihydroxypterocarpan monarch-merged.owl owl:Class CHEBI:52226 biolink:NamedThing epi-cedrol monarch-merged.owl owl:Class CHEBI:5613 biolink:NamedThing haloperidol monarch-merged.owl owl:Class CHEBI:59685 biolink:NamedThing edaxadiene monarch-merged.owl owl:Class CHEBI:59948 biolink:NamedThing columbianetin monarch-merged.owl owl:Class CHEBI:60968 biolink:NamedThing presilphiperfolan-8beta-ol monarch-merged.owl owl:Class CHEBI:62811 biolink:NamedThing heme d cis-diol monarch-merged.owl owl:Class CHEBI:63196 biolink:NamedThing (+)-caryolan-1-ol monarch-merged.owl owl:Class CHEBI:63446 biolink:NamedThing (-)-cubebol monarch-merged.owl owl:Class CHEBI:64259 biolink:NamedThing (6E)-8-oxolinalool monarch-merged.owl owl:Class CHEBI:67347 biolink:NamedThing (+)-pisatin monarch-merged.owl owl:Class CHEBI:68624 biolink:NamedThing cis-abienol monarch-merged.owl owl:Class CHEBI:72694 biolink:NamedThing (2R)-dihomocitric acid monarch-merged.owl owl:Class CHEBI:73257 biolink:NamedThing gibberellin A20 methyl ester monarch-merged.owl owl:Class CHEBI:74252 biolink:NamedThing rhizobactin 1021 monarch-merged.owl owl:Class CHEBI:74299 biolink:NamedThing geranyllinalool monarch-merged.owl owl:Class CHEBI:75244 biolink:NamedThing aklaviketone monarch-merged.owl owl:Class CHEBI:76944 biolink:NamedThing 13-epi-manool monarch-merged.owl owl:Class CHEBI:76945 biolink:NamedThing manool monarch-merged.owl owl:Class CHEBI:76948 biolink:NamedThing ent-manool monarch-merged.owl owl:Class CHEBI:76954 biolink:NamedThing (13S)-vitexifolin A monarch-merged.owl owl:Class CHEBI:78293 biolink:NamedThing ophiobolin F monarch-merged.owl owl:Class CHEBI:7940 biolink:NamedThing patchouli alcohol monarch-merged.owl owl:Class CHEBI:81874 biolink:NamedThing nogalaviketone monarch-merged.owl owl:Class CHEBI:82799 biolink:NamedThing (R)-nephthenol monarch-merged.owl owl:Class CHEBI:87121 biolink:NamedThing bisanhydrobacterioruberin monarch-merged.owl owl:Class CHEBI:87161 biolink:NamedThing dihydrobisanhydrobacterioruberin monarch-merged.owl owl:Class CHEBI:87162 biolink:NamedThing isopentenyldehydrorhodopin monarch-merged.owl owl:Class CHEBI:87163 biolink:NamedThing dihydroisopentenyldehydrorhodopin monarch-merged.owl owl:Class CHEBI:90890 biolink:NamedThing 3-farnesyl-3-hydroxy-2-methyl-1-oxo-1lambda(5)-quinolin-4-one monarch-merged.owl owl:Class CHEBI:90903 biolink:NamedThing asperlicin E monarch-merged.owl owl:Class CHEBI:9107 biolink:NamedThing senecionine monarch-merged.owl owl:Class CHEBI:62508 biolink:NamedThing eudesmane sesquiterpenoid monarch-merged.owl owl:Class CHEBI:62514 biolink:NamedThing 10-epi-gamma-eudesmol monarch-merged.owl owl:Class CHEBI:10280 biolink:NamedThing (E,E)-alpha-farnesene monarch-merged.owl owl:Class CHEBI:39236 biolink:NamedThing alpha-farnesene monarch-merged.owl owl:Class CHEBI:10283 biolink:NamedThing 2-hydroxy fatty acid monarch-merged.owl owl:Class CHEBI:24654 biolink:NamedThing hydroxy fatty acid Any fatty acid carrying one or more hydroxy substituents. monarch-merged.owl hydroxy fatty acids PMID:8274032|LIPID_MAPS_class:LMFA0105|PMID:18296335|PMID:6419288 chebi_ontology owl:Class CHEBI:131869 biolink:NamedThing hydroxy monounsaturated fatty acid monarch-merged.owl owl:Class CHEBI:132120 biolink:NamedThing resolvin monarch-merged.owl owl:Class CHEBI:132678 biolink:NamedThing 11-hydroxy-(12S,13S)-epoxy-(9Z)-octadecenoic acid monarch-merged.owl owl:Class CHEBI:132886 biolink:NamedThing 11(S)-hydroxy-14(S),15(S)-hepoxilin A3 monarch-merged.owl owl:Class CHEBI:140345 biolink:NamedThing hydroxy polyunsaturated fatty acid Any polyunsaturated fatty acid carrying one or more hydroxy substituents. monarch-merged.owl chebi_ontology owl:Class CHEBI:143095 biolink:NamedThing 10-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:17314 biolink:NamedThing 13-hydroxydocosanoic acid monarch-merged.owl owl:Class CHEBI:24684 biolink:NamedThing hydroxybutyric acid Any compound comprising a butyric acid core carrying at least one hydroxy substituent. monarch-merged.owl hydroxybutyric acids|hydroxybutanoic acid|hydroxybutanoic acids 0 C4H8O3 104.105 104.04734 chebi_ontology owl:Class CHEBI:24747 biolink:NamedThing hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:27530 biolink:NamedThing 4-hydroxy-2-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:28710 biolink:NamedThing 3-hydroxy-3-methyl-2-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:36328 biolink:NamedThing HODE Hydroxy-octadecadienoic acids, formed in mammalian cells from the corresponding hydroperoxy compounds (HPODEs). monarch-merged.owl HODEs chebi_ontology owl:Class CHEBI:37374 biolink:NamedThing (S)-3-hydroxytetradecanoic acid monarch-merged.owl owl:Class CHEBI:50451 biolink:NamedThing 6-hydroxy-3,7-dimethyloctanoic acid monarch-merged.owl owl:Class CHEBI:50452 biolink:NamedThing 6-hydroxy-3-isopropenylheptanoic acid monarch-merged.owl owl:Class CHEBI:52651 biolink:NamedThing leptomycin monarch-merged.owl owl:Class CHEBI:59845 biolink:NamedThing 3-hydroxy fatty acid Any fatty acid with a hydroxy functional group in the beta- or 3-position. beta-Hydroxy fatty acids accumulate during cardiac hypoxia, and can also be used as chemical markers of bacterial endotoxins. monarch-merged.owl beta-hydroxy fatty acid|beta-hydroxy fatty acids|beta-OH fatty acid|beta-OH fatty acids|3-hydroxy fatty acids|3-OH fatty acid|3-OH fatty acids 0 C3H5O3R 89.07000 89.02387 OC([*])CC(O)=O PMID:3094448|PMID:1226425|PMID:17392575|PMID:7406063 chebi_ontology owl:Class CHEBI:72662 biolink:NamedThing DiHOME monarch-merged.owl owl:Class CHEBI:72726 biolink:NamedThing hydroxypalmitic acid monarch-merged.owl owl:Class CHEBI:75825 biolink:NamedThing (7R)-hydroxy-(5S,6S)-epoxy-(8Z,11Z,14Z)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:83935 biolink:NamedThing 15-hydroxypalmitic acid monarch-merged.owl owl:Class CHEBI:83937 biolink:NamedThing 14-hydroxypalmitic acid monarch-merged.owl owl:Class CHEBI:84925 biolink:NamedThing omega-hydroxyphytanic acid monarch-merged.owl owl:Class CHEBI:84939 biolink:NamedThing omega-hydroxy-15-methylpalmitic acid monarch-merged.owl owl:Class CHEBI:85510 biolink:NamedThing 7-hydroxylauric acid monarch-merged.owl owl:Class CHEBI:85641 biolink:NamedThing (9E)-12-hydroxyoctadec-9-enoic acid monarch-merged.owl owl:Class CHEBI:86542 biolink:NamedThing 2-hydroxyhexanoic acid monarch-merged.owl owl:Class CHEBI:86543 biolink:NamedThing 2-hydroxyoctanoic acid monarch-merged.owl owl:Class CHEBI:49302 biolink:NamedThing 2-hydroxy monocarboxylic acid monarch-merged.owl 2-hydroxy acid|2-hydroxy monocarboxylic acids CHEBI:35967|CHEBI:19626 chebi_ontology owl:Class CHEBI:1135 biolink:NamedThing 2-hydroxy-6-(2-hydroxyphenyl)-6-oxo-cis,cis-hexa-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:1148 biolink:NamedThing 2-hydroxybutyric acid monarch-merged.owl owl:Class CHEBI:132177 biolink:NamedThing 2-hydroxy-3-methyl-2-butenoic acid monarch-merged.owl owl:Class CHEBI:16122 biolink:NamedThing 3-(4-hydroxy-3,5-diiodophenyl)lactic acid monarch-merged.owl owl:Class CHEBI:16444 biolink:NamedThing 2-acetyllactic acid monarch-merged.owl owl:Class CHEBI:16654 biolink:NamedThing (R)-4-dehydropantoic acid monarch-merged.owl owl:Class CHEBI:16992 biolink:NamedThing 2-hydroxy-3-oxopropanoic acid monarch-merged.owl owl:Class CHEBI:17375 biolink:NamedThing (2S)-2-hydroxy monocarboxylic acid A 2-hydroxy monocarboxylic acid in which the carbon at position 2 has (S)-configuration. monarch-merged.owl (2S)-2-hydroxy monocarboxylic acids|(S)-2-Hydroxyalkanoic acid|(S)-2-Hydroxymonocarboxylic acid|(S)-2-Hydroxycarboxylic acid|(S)-2-hydroxy acid|(S)-2-Hydroxy acid 0 C2H3O3R 75.044 75.00822 C([C@@H](O)*)(=O)O CHEBI:381|CHEBI:378|CHEBI:18737|CHEBI:11031 chebi_ontology owl:Class CHEBI:17807 biolink:NamedThing 3-(3,4-dihydroxyphenyl)lactic acid monarch-merged.owl owl:Class CHEBI:17893 biolink:NamedThing (2R)-2-hydroxy monocarboxylic acid A 2-hydroxy monocarboxylic acid having (2R)-configuration. monarch-merged.owl (R)-2-Hydroxyacid|(R)-2-Hydroxycarboxylic acid|(2R)-2-hydroxy monocarboxylic acids|(2R)-Hydroxy-carboxylate 0 C2H3O3R 75.04340 75.00822 O[C@H]([*])C(O)=O KEGG:C15487|KEGG:C02489 CHEBI:10973|CHEBI:18649|CHEBI:309 chebi_ontology owl:Class CHEBI:20106 biolink:NamedThing vanillylmandelic acid An aromatic ether that is the 3-O-methyl ether of 3,4-dihydroxymandelic acid. monarch-merged.owl 3-methoxy-4-hydroxymandelic acid|Vanilmandelic acid|Vanillylmandelic acid|2-hydroxy-2-(4-hydroxy-3-methoxyphenyl)acetic acid|hydroxy(4-hydroxy-3-methoxyphenyl)acetic acid 0 C9H10O5 InChI=1S/C9H10O5/c1-14-7-4-5(2-3-6(7)10)8(11)9(12)13/h2-4,8,10-11H,1H3,(H,12,13) CGQCWMIAEPEHNQ-UHFFFAOYSA-N 198.17270 198.05282 COc1cc(ccc1O)C(O)C(O)=O Reaxys:2213227|PMID:23112240|PMID:24327171|CAS:55-10-7|PMID:23399766|HMDB:HMDB0000291|MetaCyc:VANILLYL_MANDELATE|PMID:13756637|PMID:23830883|KEGG:C05584|Beilstein:2213227|Wikipedia:Vanillylmandelic_acid chebi_ontology owl:Class CHEBI:25998 biolink:NamedThing 3-phenyllactic acid monarch-merged.owl owl:Class CHEBI:27487 biolink:NamedThing 3-(imidazol-5-yl)lactic acid monarch-merged.owl owl:Class CHEBI:28990 biolink:NamedThing 2-hydroxy-6-(2-hydroxyphenoxy)-6-oxo-cis,cis-hexa-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:31112 biolink:NamedThing 3-dimethylallyl-4-hydroxymandelic acid monarch-merged.owl owl:Class CHEBI:32815 biolink:NamedThing enol-phenylpyruvic acid monarch-merged.owl owl:Class CHEBI:35825 biolink:NamedThing mandelic acid A 2-hydroxy monocarboxylic acid that is acetic acid in which two of the methyl hydrogens are substituted by phenyl and hydroxyl groups. monarch-merged.owl Mandelsaeure|alpha-hydroxybenzeneacetic acid|2-Hydroxy-2-phenylethanoic acid|hydroxy(phenyl)acetic acid|(RS)-Mandelic acid|2-Hydroxy-2-phenylacetic acid|DL-Mandelic acid 0 C8H8O3 InChI=1S/C8H8O3/c9-7(8(10)11)6-4-2-1-3-5-6/h1-5,7,9H,(H,10,11) IWYDHOAUDWTVEP-UHFFFAOYSA-N 152.14732 152.04734 OC(C(O)=O)c1ccccc1 PMID:24278065|PMID:22770225|Reaxys:510011|PMID:4813698|Gmelin:218213|Beilstein:510011|HMDB:HMDB0000703|Wikipedia:Mandelic_acid|CAS:90-64-2|Drug_Central:1629 CHEBI:32801|CHEBI:25149 chebi_ontology owl:Class CHEBI:36211 biolink:NamedThing 2-hydroxydodecanoic acid monarch-merged.owl owl:Class CHEBI:4743 biolink:NamedThing ecgonine monarch-merged.owl owl:Class CHEBI:50129 biolink:NamedThing 2-hydroxyisobutyric acid monarch-merged.owl owl:Class CHEBI:60645 biolink:NamedThing 2-hydroxy-3-methylbutyric acid monarch-merged.owl owl:Class CHEBI:78320 biolink:NamedThing 2-hydroxypropanoic acid A 2-hydroxy monocarboxylic acid that is propanoic acid in which one of the alpha-hydrogens is replaced by a hydroxy group. monarch-merged.owl 2-Hydroxypropionic acid|Lactic acid|2-hydroxypropanoic acid|2-Hydroxypropanoic acid 0 C3H6O3 InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6) JVTAAEKCZFNVCJ-UHFFFAOYSA-N 90.07790 90.03169 CC(O)C(O)=O CAS:50-21-5|KEGG:C01432|KEGG:D00111 chebi_ontology owl:Class CHEBI:83171 biolink:NamedThing (2E,4Z)-2-hydroxy-7-methyl-6-oxo-2,4-octadienoic acid monarch-merged.owl owl:Class CHEBI:10329 biolink:NamedThing alpha-ribazole monarch-merged.owl owl:Class CHEBI:23809 biolink:NamedThing dimethylbenzimidazole monarch-merged.owl owl:Class CHEBI:15890 biolink:NamedThing 5,6-dimethylbenzimidazole monarch-merged.owl owl:Class CHEBI:16837 biolink:NamedThing alpha-ribazole 5'-phosphate monarch-merged.owl owl:Class CHEBI:47917 biolink:NamedThing 1-ribosylbenzimidazole monarch-merged.owl owl:Class CHEBI:35187 biolink:NamedThing monoterpene monarch-merged.owl owl:Class CHEBI:15384 biolink:NamedThing limonene monarch-merged.owl owl:Class CHEBI:17187 biolink:NamedThing pinene monarch-merged.owl owl:Class CHEBI:17221 biolink:NamedThing beta-myrcene monarch-merged.owl owl:Class CHEBI:25826 biolink:NamedThing p-menthane monarch-merged.owl owl:Class CHEBI:28768 biolink:NamedThing p-cymene monarch-merged.owl owl:Class CHEBI:35661 biolink:NamedThing car-3-ene monarch-merged.owl owl:Class CHEBI:35663 biolink:NamedThing carane monarch-merged.owl owl:Class CHEBI:35709 biolink:NamedThing thujane monarch-merged.owl owl:Class CHEBI:35710 biolink:NamedThing pinane monarch-merged.owl owl:Class CHEBI:35783 biolink:NamedThing bornane monarch-merged.owl owl:Class CHEBI:36611 biolink:NamedThing fenchane monarch-merged.owl owl:Class CHEBI:3830 biolink:NamedThing camphene monarch-merged.owl owl:Class CHEBI:50030 biolink:NamedThing thujene monarch-merged.owl owl:Class CHEBI:50073 biolink:NamedThing p-menthadiene monarch-merged.owl owl:Class CHEBI:64266 biolink:NamedThing tricyclene monarch-merged.owl owl:Class CHEBI:87751 biolink:NamedThing ocimene monarch-merged.owl owl:Class CHEBI:10357 biolink:NamedThing (-)-beta-caryophyllene monarch-merged.owl owl:Class CHEBI:63190 biolink:NamedThing (+)-beta-caryophyllene monarch-merged.owl owl:Class CHEBI:10359 biolink:NamedThing (-)-beta-chamigrene monarch-merged.owl owl:Class CHEBI:61746 biolink:NamedThing (+)-beta-chamigrene monarch-merged.owl owl:Class CHEBI:38032 biolink:NamedThing carbotricyclic compound A carbopolyclic compound comprising of three carbocyclic rings. monarch-merged.owl carbotricyclic compounds chebi_ontology owl:Class CHEBI:138656 biolink:NamedThing rhizathalene A monarch-merged.owl owl:Class CHEBI:138942 biolink:NamedThing 11-hydroxyferruginol monarch-merged.owl owl:Class CHEBI:138943 biolink:NamedThing carnosate monarch-merged.owl owl:Class CHEBI:138944 biolink:NamedThing salviol monarch-merged.owl owl:Class CHEBI:138961 biolink:NamedThing sugiol monarch-merged.owl owl:Class CHEBI:138962 biolink:NamedThing 11-hydroxysugiol monarch-merged.owl owl:Class CHEBI:23359 biolink:NamedThing colchicine An alkaloid that is a carbotricyclic compound comprising 5,6,7,9-tetrahydrobenzo[a]heptalene having four methoxy substituents at the 1-, 2-, 3- and 10-positions as well as an oxo group at the 9-position and an acetamido group at the 7-position. It has been isolated from the plants belonging to genus Colchicum. monarch-merged.owl N-(1,2,3,10-tetramethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl)acetamide 0 C22H25NO6 InChI=1S/C22H25NO6/c1-12(24)23-16-8-6-13-10-19(27-3)21(28-4)22(29-5)20(13)14-7-9-18(26-2)17(25)11-15(14)16/h7,9-11,16H,6,8H2,1-5H3,(H,23,24) IAKHMKGGTNLKSZ-UHFFFAOYSA-N 399.43704 399.16819 COc1cc2CCC(NC(C)=O)c3cc(=O)c(OC)ccc3-c2c(OC)c1OC PMID:7200520|DrugBank:DB01394|Beilstein:2228812|LINCS:LSM-6449|Reaxys:2228812|PMID:24074178|PMID:9819133|HMDB:HMDB0015466|CAS:54192-66-4|PMID:10680067 chebi_ontology owl:Class CHEBI:24059 biolink:NamedThing fluorenes monarch-merged.owl owl:Class CHEBI:25961 biolink:NamedThing phenanthrenes monarch-merged.owl owl:Class CHEBI:36745 biolink:NamedThing cedrane sesquiterpenoid monarch-merged.owl owl:Class CHEBI:38033 biolink:NamedThing acenaphthylenes monarch-merged.owl owl:Class CHEBI:46955 biolink:NamedThing anthracenes monarch-merged.owl owl:Class CHEBI:52482 biolink:NamedThing levopimaradienol monarch-merged.owl owl:Class CHEBI:52483 biolink:NamedThing levopimaradienal monarch-merged.owl owl:Class CHEBI:52484 biolink:NamedThing isopimara-7,15-dienol monarch-merged.owl owl:Class CHEBI:52485 biolink:NamedThing isopimara-7,15-dienal monarch-merged.owl owl:Class CHEBI:52486 biolink:NamedThing dehydroabietadienol monarch-merged.owl owl:Class CHEBI:52487 biolink:NamedThing dehydroabietadienal monarch-merged.owl owl:Class CHEBI:63664 biolink:NamedThing taxusin monarch-merged.owl owl:Class CHEBI:65037 biolink:NamedThing miltiradiene monarch-merged.owl owl:Class CHEBI:68665 biolink:NamedThing pentalenic acid monarch-merged.owl owl:Class CHEBI:68832 biolink:NamedThing 1-deoxypentalenic acid monarch-merged.owl owl:Class CHEBI:70796 biolink:NamedThing 1-deoxy-11beta-hydroxypentalenic acid monarch-merged.owl owl:Class CHEBI:70797 biolink:NamedThing 1-deoxy-11-oxopentalenic acid monarch-merged.owl owl:Class CHEBI:77046 biolink:NamedThing isopimarane monarch-merged.owl owl:Class CHEBI:78274 biolink:NamedThing ferruginol monarch-merged.owl owl:Class CHEBI:10365 biolink:NamedThing (5S)-3-acetyl-4-hydroxy-5-{[4-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]methyl}-1,5-dihydro-2H-pyrrol-2-one monarch-merged.owl owl:Class CHEBI:22838 biolink:NamedThing beta-cyclopiazonic acid monarch-merged.owl owl:Class CHEBI:17233 biolink:NamedThing (3Z,5S)-3-(1-hydroxyethylidene)-5-{[4-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]methyl}pyrrolidine-2,4-dione monarch-merged.owl owl:Class CHEBI:104120 biolink:NamedThing alpha-methylene gamma-butyrolactone monarch-merged.owl owl:Class CHEBI:22950 biolink:NamedThing butan-4-olide monarch-merged.owl owl:Class CHEBI:139267 biolink:NamedThing [(3S)-4-(6-methylheptanoyl)-5-oxooxolan-3-yl]methyl phosphate monarch-merged.owl owl:Class CHEBI:16719 biolink:NamedThing (R)-pantolactone monarch-merged.owl owl:Class CHEBI:17289 biolink:NamedThing homoserine lactone monarch-merged.owl owl:Class CHEBI:4553 biolink:NamedThing dihydroanhydropodorhizol monarch-merged.owl owl:Class CHEBI:74168 biolink:NamedThing D-ribono-1,4-lactone monarch-merged.owl owl:Class CHEBI:83169 biolink:NamedThing N-acyl homoserine lactone monarch-merged.owl owl:Class CHEBI:90893 biolink:NamedThing (-)-bursehernin monarch-merged.owl owl:Class CHEBI:90894 biolink:NamedThing (-)-5'-desmethylyatein monarch-merged.owl owl:Class CHEBI:90896 biolink:NamedThing (-)-pluviatolide monarch-merged.owl owl:Class CHEBI:10415 biolink:NamedThing beta-endorphin monarch-merged.owl owl:Class CHEBI:15841 biolink:NamedThing polypeptide A peptide containing ten or more amino acid residues. monarch-merged.owl polipeptido|Polypeptide|polypeptides|Polypeptid C4H6N2O3R2(C2H2NOR)n KEGG:C00403 CHEBI:8314|CHEBI:14860 chebi_ontology owl:Class CHEBI:145810 biolink:NamedThing insulin A peptide hormone which consists of two polypeptide chains, A- and B- chains which are linked together by disulfide bonds. The amino acid sequence of insulin varies across species and certain segments of the molecule are highly conserved. In most species, the A chain consists of 21 amino acids and the B chain consists of 30 amino acids. In mammals, insulin is synthesised in the pancreas within the beta cells whereas in certain species of fish, the insulin-producing tissue is uniquely located in separate structures called Brockmann bodies. monarch-merged.owl PMID:5941964|PMID:19251032|PMID:12137720|PMID:6069707|PMID:25848166|Wikipedia:Insulin chebi_ontology owl:Class CHEBI:16541 biolink:NamedThing protein polypeptide chain A naturally occurring polypeptide synthesized at the ribosome. monarch-merged.owl Protein|protein polypeptide chains|polypeptide chain KEGG:C00017 CHEBI:8526 chebi_ontology owl:Class CHEBI:3306 biolink:NamedThing calcitonin monarch-merged.owl owl:Class CHEBI:35862 biolink:NamedThing bacitracin A monarch-merged.owl owl:Class CHEBI:3892 biolink:NamedThing corticotropin A polypeptide hormone produced and secreted by the pituitary gland comprising 39 amino acid residues coupled in a linear sequence. The N-terminal 24-amino acid segment is identical in all species and contains the adrenocorticotrophic activity. Corticotropin stimulates the cortex of the adrenal gland and boosts the synthesis of corticosteroids, mainly glucocorticoids but also sex steroids (androgens). It is used in the treatment of certain neurological disorders such as infantile spasms and multiple sclerosis, and diagnostically to investigate adrenocortical insufficiency. monarch-merged.owl Adrenocorticotropic hormone|corticotrophine|corticotrophinum|Corticotropin|corticotrofina|corticotropin|cortrophin|ACTH|SYSMEHFRWGKPVGKKRRPVKVYPDGAEDQLAEAFPLEF|adrenocorticotropin|L-seryl-L-tyrosyl-L-seryl-L-methionyl-L-alpha-glutamyl-L-histidyl-L-phenylalanyl-L-arginyl-L-tryptophylglycyl-L-lysyl-L-prolyl-L-valylglycyl-L-lysyl-L-lysyl-L-arginyl-L-arginyl-L-prolyl-L-valyl-L-lysyl-L-valyl-L-tyrosyl-L-prolyl-L-alpha-aspartylglycyl-L-alanyl-L-alpha-glutamyl-L-alpha-aspartyl-L-alpha-glutamyl-L-seryl-L-alanyl-L-alpha-glutamyl-L-alanyl-L-phenylalanyl-L-prolyl-L-leucyl-L-alpha-glutamyl-L-phenylalanine 0 C207H308N56O58S InChI=1S/C207H308N56O58S/c1-108(2)89-140(186(302)240-135(69-74-163(279)280)182(298)254-149(204(320)321)94-117-43-20-15-21-44-117)250-193(309)152-54-35-86-262(152)202(318)147(92-116-41-18-14-19-42-116)252-171(287)114(11)230-175(291)132(66-71-160(273)274)234-170(286)113(10)231-191(307)150(105-265)255-183(299)136(70-75-164(281)282)241-190(306)146(98-165(283)284)249-180(296)133(67-72-161(275)276)235-169(285)112(9)229-157(270)101-225-174(290)145(97-156(213)269)251-194(310)153-55-36-87-263(153)203(319)148(93-119-60-64-123(268)65-61-119)253-199(315)167(110(5)6)257-185(301)129(49-26-30-79-210)243-198(314)168(111(7)8)259-196(312)155-57-38-85-261(155)201(317)139(53-34-83-223-207(218)219)244-178(294)130(51-32-81-221-205(214)215)237-177(293)128(48-25-29-78-209)236-176(292)127(47-24-28-77-208)232-158(271)103-227-197(313)166(109(3)4)258-195(311)154-56-37-84-260(154)200(316)138(50-27-31-80-211)233-159(272)102-226-173(289)143(95-120-99-224-126-46-23-22-45-124(120)126)247-179(295)131(52-33-82-222-206(216)217)238-187(303)142(90-115-39-16-13-17-40-115)246-189(305)144(96-121-100-220-107-228-121)248-181(297)134(68-73-162(277)278)239-184(300)137(76-88-322-12)242-192(308)151(106-266)256-188(304)141(245-172(288)125(212)104-264)91-118-58-62-122(267)63-59-118/h13-23,39-46,58-65,99-100,107-114,125,127-155,166-168,224,264-268H,24-38,47-57,66-98,101-106,208-212H2,1-12H3,(H2,213,269)(H,220,228)(H,225,290)(H,226,289)(H,227,313)(H,229,270)(H,230,291)(H,231,307)(H,232,271)(H,233,272)(H,234,286)(H,235,285)(H,236,292)(H,237,293)(H,238,303)(H,239,300)(H,240,302)(H,241,306)(H,242,308)(H,243,314)(H,244,294)(H,245,288)(H,246,305)(H,247,295)(H,248,297)(H,249,296)(H,250,309)(H,251,310)(H,252,287)(H,253,315)(H,254,298)(H,255,299)(H,256,304)(H,257,301)(H,258,311)(H,259,312)(H,273,274)(H,275,276)(H,277,278)(H,279,280)(H,281,282)(H,283,284)(H,320,321)(H4,214,215,221)(H4,216,217,222)(H4,218,219,223)/t112-,113-,114-,125-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,166-,167-,168-/m0/s1 IDLFZVILOHSSID-OVLDLUHVSA-N 4541.06600 4538.25937 CSCC[C@H](NC(=O)[C@H](CO)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@@H](N)CO)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](Cc1cnc[nH]1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C(C)C)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CC(N)=O)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](C)C(=O)N[C@@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](Cc1ccccc1)C(O)=O DrugBank:DB01285|KEGG:C02017|KEGG:D00146|Drug_Central:4931|CAS:9002-60-2 chebi_ontology owl:Class CHEBI:64121 biolink:NamedThing P-factor monarch-merged.owl owl:Class CHEBI:64645 biolink:NamedThing amyloid-beta A peptide of 36-43 amino acids that is processed from the amyloid precursor protein. Appears to be the main constituent of amyloid plaques (deposits found in the brains of Alzheimer's disease patients). monarch-merged.owl beta-amyloids|beta-amyloid|amyloid beta|beta amyloid PMID:22569063|PMID:22561032|KEGG:C16515|PMID:21892760|PMID:22226401|Wikipedia:Beta_amyloid|PMID:22459190|PMID:22457725|KEGG:C16514 CHEBI:53002 chebi_ontology owl:Class CHEBI:65311 biolink:NamedThing corticotropin-releasing hormone monarch-merged.owl owl:Class CHEBI:65318 biolink:NamedThing cyanophycin macromolecule monarch-merged.owl owl:Class CHEBI:75431 biolink:NamedThing ghrelin A 28-membered appetite-stimulating polypeptide consisting of Gly, Ser, Ser(octanoyl), Phe, Leu, Ser, Pro, Glu, His, Gln, Arg, Val, Gln, Gln, Arg, Lys, Glu, Ser, Lys, Lys, Pro, Pro, Ala, Lys, Leu, Gln, Pro and Arg residues joined in sequence. The O-n-octanoylation of the side-chain hydroxy group of serine-3 (Ser3) is essential for ghrelin's activity. monarch-merged.owl Gly-Ser-Ser(octanoyl)-Phe-Leu-Ser-Pro-Glu-His-Gln-Arg-Val-Gln-Gln-Arg-Lys-Glu-Ser-Lys-Lys-Pro-Pro-Ala-Lys-Leu-Gln-Pro-Arg|Ghrelin (human)|lenomorelinum|Human ghrelin|lenomoreline|glycyl-L-seryl-O-octanoyl-L-seryl-L-phenylalanyl-L-leucyl-L-seryl-L-prolyl-L-alpha-glutamyl-L-histidyl-L-glutaminyl-L-arginyl-L-valyl-L-glutaminyl-L-glutaminyl-L-arginyl-L-lysyl-L-alpha-glutamyl-L-seryl-L-lysyl-L-lysyl-L-prolyl-L-prolyl-L-alanyl-L-lysyl-L-leucyl-L-glutaminyl-L-prolyl-L-arginine|lenomorelin|GSS(octanoyl)FLSPEHQRVQQRKESKKPPAKLQPR|H-Gly-Ser-Ser(n-octanoyl)-Phe-Leu-Ser-Pro-Glu-His-Gln-Arg-Val-Gln-Gln-Arg-Lys-Glu-Ser-Lys-Lys-Pro-Pro-Ala-Lys-Leu-Gln-Pro-Arg-OH|lenomorelina|GS-S(n-octanoyl)-FLSPEHQRVQQRKESKKPPAKLQPR|Motilin-related peptide|Gastric MLTRP 0 C149H249N47O42 InChI=1S/C149H249N47O42/c1-9-10-11-12-16-45-118(209)238-78-106(191-135(225)103(75-197)171-115(204)73-154)137(227)187-101(71-84-32-14-13-15-33-84)133(223)186-100(70-81(4)5)132(222)190-105(77-199)144(234)194-66-29-42-108(194)139(229)180-95(51-57-117(207)208)128(218)188-102(72-85-74-165-79-169-85)134(224)179-92(47-53-112(156)201)126(216)175-90(39-26-63-167-148(161)162)130(220)192-119(82(6)7)141(231)181-93(48-54-113(157)202)127(217)177-91(46-52-111(155)200)125(215)174-89(38-25-62-166-147(159)160)122(212)173-87(35-18-22-59-151)121(211)178-94(50-56-116(205)206)129(219)189-104(76-198)136(226)176-88(36-19-23-60-152)123(213)182-96(37-20-24-61-153)142(232)196-68-31-44-110(196)145(235)195-67-30-41-107(195)138(228)170-83(8)120(210)172-86(34-17-21-58-150)124(214)185-99(69-80(2)3)131(221)183-97(49-55-114(158)203)143(233)193-65-28-43-109(193)140(230)184-98(146(236)237)40-27-64-168-149(163)164/h13-15,32-33,74,79-83,86-110,119,197-199H,9-12,16-31,34-73,75-78,150-154H2,1-8H3,(H2,155,200)(H2,156,201)(H2,157,202)(H2,158,203)(H,165,169)(H,170,228)(H,171,204)(H,172,210)(H,173,212)(H,174,215)(H,175,216)(H,176,226)(H,177,217)(H,178,211)(H,179,224)(H,180,229)(H,181,231)(H,182,213)(H,183,221)(H,184,230)(H,185,214)(H,186,223)(H,187,227)(H,188,218)(H,189,219)(H,190,222)(H,191,225)(H,192,220)(H,205,206)(H,207,208)(H,236,237)(H4,159,160,166)(H4,161,162,167)(H4,163,164,168)/t83-,86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,96-,97-,98-,99-,100-,101-,102-,103-,104-,105-,106-,107-,108-,109-,110-,119-/m0/s1 GNKDKYIHGQKHHM-RJKLHVOGSA-N 3370.867 3368.87933 C(C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(N1[C@@H](CCC1)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(N2[C@@H](CCC2)C(N3[C@@H](CCC3)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(N4[C@@H](CCC4)C(=O)N[C@H](C(=O)O)CCCNC(=N)N)=O)CCC(=O)N)CC(C)C)CCCCN)C)=O)=O)CCCCN)CCCCN)CO)CCC(=O)O)CCCCN)CCCNC(N)=N)CCC(=O)N)CCC(=O)N)C(C)C)CCCNC(N)=N)CCC(=O)N)CC=5N=CNC5)CCC(=O)O)=O)CO)CC(C)C)CC=6C=CC=CC6)COC(=O)CCCCCCC)CO)N PMID:28590260|Wikipedia:Ghrelin|PMID:23524619|PMID:23808302|PMID:28704966|PMID:23652399|PMID:28542403|PMID:28547758|PMID:23698230|PMID:23624808|PMID:23804489|PMID:23965296|PMID:15788704|PMID:28621678|CAS:258279-04-8|PMID:23704134|PMID:23178701|PMID:23778458|PMID:23652420|PMID:23317782|PMID:23159561|PMID:28538835|PMID:23428971|PMID:23847595|CAS:304853-26-7|KEGG:C16025|PMID:23652386|PMID:23982275|PMID:23843943|Reaxys:24715767|PMID:23631903|PMID:23359315|PMID:23316086|PMID:23307791|PMID:23989358|PMID:23481295|PMID:23278489 chebi_ontology owl:Class CHEBI:36785 biolink:NamedThing carbobicyclic compound monarch-merged.owl owl:Class CHEBI:142348 biolink:NamedThing hexahydronaphthalenes monarch-merged.owl owl:Class CHEBI:15405 biolink:NamedThing (-)-endo-fenchol monarch-merged.owl owl:Class CHEBI:23375 biolink:NamedThing copalyl diphosphate monarch-merged.owl owl:Class CHEBI:25477 biolink:NamedThing naphthalenes monarch-merged.owl owl:Class CHEBI:35428 biolink:NamedThing ortho-fused bicyclic hydrocarbon monarch-merged.owl owl:Class CHEBI:36786 biolink:NamedThing tetralins monarch-merged.owl owl:Class CHEBI:46940 biolink:NamedThing indanes monarch-merged.owl owl:Class CHEBI:4999 biolink:NamedThing fenchone monarch-merged.owl owl:Class CHEBI:63741 biolink:NamedThing 9,17-dioxo-1,2,3,4,10,19-hexanorandrostan-5-oic acid monarch-merged.owl owl:Class CHEBI:82972 biolink:NamedThing 3alpha-hydroxy-3,5-dihydromonacolin L acid monarch-merged.owl owl:Class CHEBI:83796 biolink:NamedThing 3-hydroxy-9-oxo-9,10-seco-23,24-bisnorchola-1,3,5(10)-trien-22-oic acid monarch-merged.owl owl:Class CHEBI:90740 biolink:NamedThing dihydronaphthalenes monarch-merged.owl owl:Class CHEBI:10418 biolink:NamedThing trans-beta-farnesene monarch-merged.owl owl:Class CHEBI:39241 biolink:NamedThing beta-farnesene monarch-merged.owl owl:Class CHEBI:10436 biolink:NamedThing beta-ocimene monarch-merged.owl owl:Class CHEBI:10443 biolink:NamedThing (+)-beta-selinene monarch-merged.owl owl:Class CHEBI:49276 biolink:NamedThing beta-selinene monarch-merged.owl owl:Class CHEBI:49274 biolink:NamedThing (-)-beta-selinene monarch-merged.owl owl:Class CHEBI:10502 biolink:NamedThing dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:28375 biolink:NamedThing dTDP-3-amino-3,4,6-trideoxy-D-glucose monarch-merged.owl owl:Class CHEBI:10525 biolink:NamedThing dTDP-beta-L-mycarose monarch-merged.owl owl:Class CHEBI:23557 biolink:NamedThing dTDP-sugar monarch-merged.owl owl:Class CHEBI:138660 biolink:NamedThing dTDP-4-formamido-4,6-dideoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:15700 biolink:NamedThing dTDP-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:15848 biolink:NamedThing dTDP-galactose monarch-merged.owl owl:Class CHEBI:15952 biolink:NamedThing dTDP-4-amino-4,6-dideoxy-D-glucose monarch-merged.owl owl:Class CHEBI:15972 biolink:NamedThing dTDP-4-amino-4,6-dideoxy-D-galactose monarch-merged.owl owl:Class CHEBI:16081 biolink:NamedThing dTDP-L-dihydrostreptose monarch-merged.owl owl:Class CHEBI:16128 biolink:NamedThing dTDP-4-dehydro-6-deoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:17262 biolink:NamedThing dTDP-D-galacturonic acid monarch-merged.owl owl:Class CHEBI:17307 biolink:NamedThing dTDP-6-deoxy-L-talose monarch-merged.owl owl:Class CHEBI:17510 biolink:NamedThing dTDP-D-fucose monarch-merged.owl owl:Class CHEBI:27948 biolink:NamedThing dTDP-alpha-D-desosamine monarch-merged.owl owl:Class CHEBI:28294 biolink:NamedThing dTDP-4-acetamido-4,6-dideoxy-D-glucose monarch-merged.owl owl:Class CHEBI:29726 biolink:NamedThing dTDP-6-deoxy-alpha-D-allose monarch-merged.owl owl:Class CHEBI:29728 biolink:NamedThing dTDP-alpha-D-mycaminose monarch-merged.owl owl:Class CHEBI:32333 biolink:NamedThing dTDP-5,5-di-C-methyl-beta-L-lyxose monarch-merged.owl owl:Class CHEBI:32336 biolink:NamedThing dTDP-beta-L-vancosamine monarch-merged.owl owl:Class CHEBI:32340 biolink:NamedThing dTDP-beta-L-daunosamine monarch-merged.owl owl:Class CHEBI:35251 biolink:NamedThing dTDP-mannose monarch-merged.owl owl:Class CHEBI:35253 biolink:NamedThing dTDP-talose monarch-merged.owl owl:Class CHEBI:45868 biolink:NamedThing dTDP-4-dehydro-beta-L-rhamnose monarch-merged.owl owl:Class CHEBI:61119 biolink:NamedThing dTDP-rhamnose monarch-merged.owl owl:Class CHEBI:61661 biolink:NamedThing dTDP-4-acetamido-4,6-dideoxy-D-galactose monarch-merged.owl owl:Class CHEBI:63202 biolink:NamedThing dTDP-D-ravidosamine monarch-merged.owl owl:Class CHEBI:63264 biolink:NamedThing dTDP-3-amino-3,6-dideoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:63286 biolink:NamedThing dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose monarch-merged.owl owl:Class CHEBI:63743 biolink:NamedThing dTDP-3-acetamido-3,6-dideoxy-alpha-D-galactopyranose monarch-merged.owl owl:Class CHEBI:76056 biolink:NamedThing dTDP-beta-L-4-epi-vancosamine monarch-merged.owl owl:Class CHEBI:76289 biolink:NamedThing dTDP-4-dehydro-6-deoxy-alpha-D-gulose monarch-merged.owl owl:Class CHEBI:76295 biolink:NamedThing dTDP-alpha-D-fucofuranose monarch-merged.owl owl:Class CHEBI:77269 biolink:NamedThing dTDP-beta-L-evernitrose monarch-merged.owl owl:Class CHEBI:77280 biolink:NamedThing dTDP-2,3,6-trideoxy-3-C-methyl-4-O-methyl-3-nitroso-beta-L-arabino-hexopyranose monarch-merged.owl owl:Class CHEBI:77281 biolink:NamedThing dTDP-N-hydroxy-beta-L-evernosamine monarch-merged.owl owl:Class CHEBI:77285 biolink:NamedThing dTDP-beta-L-evernosamine monarch-merged.owl owl:Class CHEBI:79171 biolink:NamedThing dTDP-beta-L-rhodosamine monarch-merged.owl owl:Class CHEBI:79173 biolink:NamedThing dTDP-2-deoxy-beta-L-fucose monarch-merged.owl owl:Class CHEBI:85369 biolink:NamedThing dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:90167 biolink:NamedThing dTDP-2,3-dehydro-2,6-dideoxy-4-keto-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:10545 biolink:NamedThing electron Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV. monarch-merged.owl beta(-)|negatron|beta-particle|e|e(-)|e-|beta|Elektron|electron -1 0.000548579903 0.0 Wikipedia:Electron|PMID:21614077|KEGG:C05359 chebi_ontology owl:Class CHEBI:36338 biolink:NamedThing lepton Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin). monarch-merged.owl leptons chebi_ontology owl:Class CHEBI:10576 biolink:NamedThing (3R,4S,5S,6R)-1,3,4,5,6-pentachlorocyclohexene monarch-merged.owl owl:Class CHEBI:23139 biolink:NamedThing chlorocyclohexene monarch-merged.owl owl:Class CHEBI:142493 biolink:NamedThing (3S,4R,5R,6S)-1,3,4,5,6-pentachlorocyclohexene monarch-merged.owl owl:Class CHEBI:1060 biolink:NamedThing 2-dehydro-3-deoxy-D-arabinonic acid monarch-merged.owl owl:Class CHEBI:24963 biolink:NamedThing ketoaldonic acid Oxo carboxylic acids formally derived from aldonic acids by replacement of a secondary CHOH group by a carbonyl group. monarch-merged.owl ketoaldonic acids|ketoaldonic acid chebi_ontology owl:Class CHEBI:11791 biolink:NamedThing 3-deoxy-D-manno-octulosonic acid monarch-merged.owl owl:Class CHEBI:132125 biolink:NamedThing 2,4-didehydro-3-deoxy-L-rhamnonic acid monarch-merged.owl owl:Class CHEBI:137502 biolink:NamedThing (S)-2,4-dihydroxy-3-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:16142 biolink:NamedThing 3-dehydro-L-gulonic acid monarch-merged.owl owl:Class CHEBI:16622 biolink:NamedThing 3-dehydro-2-deoxy-D-gluconic acid monarch-merged.owl owl:Class CHEBI:16943 biolink:NamedThing (R)-2,4-dihydroxy-3-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:16950 biolink:NamedThing 2-dehydro-3-deoxy-L-fuconic acid monarch-merged.owl owl:Class CHEBI:17028 biolink:NamedThing 2-dehydro-3-deoxy-D-galactonic acid monarch-merged.owl owl:Class CHEBI:17032 biolink:NamedThing 2-dehydro-3-deoxy-D-gluconic acid monarch-merged.owl owl:Class CHEBI:17426 biolink:NamedThing 5-dehydro-D-gluconic acid monarch-merged.owl owl:Class CHEBI:17647 biolink:NamedThing 2-dehydro-3-deoxy-L-arabinonic acid monarch-merged.owl owl:Class CHEBI:18078 biolink:NamedThing 2-dehydro-3-deoxy-L-rhamnonic acid monarch-merged.owl owl:Class CHEBI:18104 biolink:NamedThing 2-dehydro-3-deoxy-D-fuconic acid monarch-merged.owl owl:Class CHEBI:19543 biolink:NamedThing 2-dehydro-L-idonic acid monarch-merged.owl owl:Class CHEBI:22652 biolink:NamedThing ascorbic acid monarch-merged.owl chebi_ontology owl:Class CHEBI:27972 biolink:NamedThing 2-deoxy-D-gluc-5-ulosonic acid monarch-merged.owl owl:Class CHEBI:51822 biolink:NamedThing 3,7-dideoxy-D-threo-hepto-2,6-diuolosonic acid monarch-merged.owl owl:Class CHEBI:71429 biolink:NamedThing deaminoneuraminic acid monarch-merged.owl owl:Class CHEBI:75840 biolink:NamedThing 2-keto-3-deoxy-L-galactonic acid monarch-merged.owl owl:Class CHEBI:87306 biolink:NamedThing (7R)-6-deoxy-D-manno-oct-7-ulosuronic acid monarch-merged.owl owl:Class CHEBI:33753 biolink:NamedThing pentonic acid monarch-merged.owl owl:Class CHEBI:33509 biolink:NamedThing arabinonic acid monarch-merged.owl owl:Class CHEBI:33511 biolink:NamedThing ribonic acid monarch-merged.owl owl:Class CHEBI:33828 biolink:NamedThing xylonic acid monarch-merged.owl owl:Class CHEBI:35910 biolink:NamedThing 2-oxo monocarboxylic acid Any monocarboxylic acid having a 2-oxo substituent. monarch-merged.owl 2-oxo acid|2-Oxo acid|2-oxo monocarboxylic acids|2-oxo carboxylic acids|2-Oxocarboxylate 0 C2HO3R 73.02750 72.99257 OC(=O)C([*])=O KEGG:C00161 CHEBI:19736|CHEBI:1238|CHEBI:35909|CHEBI:13195|CHEBI:11634|CHEBI:13594 chebi_ontology owl:Class CHEBI:134529 biolink:NamedThing omega-(methylthio)-2-oxocarboxylic acid monarch-merged.owl owl:Class CHEBI:15999 biolink:NamedThing 4-hydroxyphenylpyruvic acid A 2-oxo monocarboxylic acid that is pyruvic acid in which one of the methyl hydrogens is substituted by a 4-hydroxyphenyl group. monarch-merged.owl p-Hydroxyphenylpyruvic acid|3-(4-HYDROXY-PHENYL)PYRUVIC ACID|3-(4-hydroxyphenyl)pyruvic acid|(p-hydroxyphenyl)pyruvic acid|(4-hydroxyphenyl)pyruvic acid|4-hydroxy alpha-oxobenzenepropanoic acid|3-(4-hydroxyphenyl)-2-oxopropanoic acid|3-(p-hydroxyphenyl)-2-oxopropanoic acid|4-hydroxyphenylpyruvic acid 0 C9H8O4 InChI=1S/C9H8O4/c10-7-3-1-6(2-4-7)5-8(11)9(12)13/h1-4,10H,5H2,(H,12,13) KKADPXVIOXHVKN-UHFFFAOYSA-N 180.159 180.04226 OC(=O)C(=O)CC1=CC=C(O)C=C1 Beilstein:2691632|PDBeChem:ENO|Wikipedia:4-Hydroxyphenylpyruvic_acid|KEGG:C01179|CAS:156-39-8|HMDB:HMDB0000707|PMID:11073718|Reaxys:2691632|MetaCyc:P-HYDROXY-PHENYLPYRUVATE|DrugBank:DB07718|KNApSAcK:C00007512|PMID:9106023 CHEBI:1431|CHEBI:42422|CHEBI:20426 chebi_ontology owl:Class CHEBI:16208 biolink:NamedThing 3-mercaptopyruvic acid monarch-merged.owl owl:Class CHEBI:16530 biolink:NamedThing 3-methyl-2-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:16582 biolink:NamedThing oxaluric acid monarch-merged.owl owl:Class CHEBI:16891 biolink:NamedThing glyoxylic acid monarch-merged.owl owl:Class CHEBI:17308 biolink:NamedThing 2-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:17442 biolink:NamedThing 4-(2-aminophenyl)-2,4-dioxobutanoic acid monarch-merged.owl owl:Class CHEBI:17534 biolink:NamedThing 6-amino-2-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:17655 biolink:NamedThing 4-hydroxy-2-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:17667 biolink:NamedThing 3-hydroxy-3-methyl-2-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:18168 biolink:NamedThing 2-oxophytanic acid monarch-merged.owl owl:Class CHEBI:18280 biolink:NamedThing phenylglyoxylic acid monarch-merged.owl owl:Class CHEBI:19891 biolink:NamedThing 3,4-dihydroxyphenylpyruvic acid monarch-merged.owl owl:Class CHEBI:28116 biolink:NamedThing 5-guanidino-2-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:28376 biolink:NamedThing 6-acetamido-2-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:28549 biolink:NamedThing 3-(indol-3-yl)-2-oxobutyric acid monarch-merged.owl owl:Class CHEBI:29750 biolink:NamedThing 3-(indol-3-yl)pyruvic acid monarch-merged.owl owl:Class CHEBI:30820 biolink:NamedThing 2-oxooctadecanoic acid monarch-merged.owl owl:Class CHEBI:30831 biolink:NamedThing 2-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:30841 biolink:NamedThing 3-hydroxypyruvic acid monarch-merged.owl owl:Class CHEBI:30851 biolink:NamedThing keto-phenylpyruvic acid monarch-merged.owl owl:Class CHEBI:30882 biolink:NamedThing 2-oxoglutaramic acid monarch-merged.owl owl:Class CHEBI:30935 biolink:NamedThing 3-phosphonopyruvic acid monarch-merged.owl owl:Class CHEBI:31113 biolink:NamedThing 3-dimethylallyl-4-hydroxyphenylpyruvic acid monarch-merged.owl owl:Class CHEBI:32816 biolink:NamedThing pyruvic acid A 2-oxo monocarboxylic acid that is the 2-keto derivative of propionic acid. It is a metabolite obtained during glycolysis. monarch-merged.owl acide pyruvique|acetylformic acid|2-ketopropionic acid|2-Oxopropanoic acid|alpha-ketopropionic acid|2-Oxopropionsaeure|Pyroracemic acid|BTS|Brenztraubensaeure|alpha-Oxopropionsaeure|2-oxopropanoic acid|2-Oxopropansaeure|PYRUVIC ACID|CH3COCOOH|Pyruvic acid|Acetylformic acid|pyruvic acid 0 C3H4O3 InChI=1S/C3H4O3/c1-2(4)3(5)6/h1H3,(H,5,6) LCTONWCANYUPML-UHFFFAOYSA-N 88.06206 88.01604 CC(=O)C(O)=O PMID:11762589|KNApSAcK:C00001200|PMID:22735334|LIPID_MAPS_instance:LMFA01060077|CAS:127-17-3|PMID:22233273|PMID:19260671|PMID:22770225|Beilstein:506211|HMDB:HMDB0000243|ECMDB:ECMDB00243|Wikipedia:Pyruvic_acid|PMID:22150460|YMDB:YMDB00175|MetaCyc:PYRUVATE|PDBeChem:PYR|KEGG:C00022|DrugBank:DB00119|Reaxys:506211|Gmelin:101087 CHEBI:8685|CHEBI:45253|CHEBI:26466 chebi_ontology owl:Class CHEBI:33033 biolink:NamedThing 2-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:35932 biolink:NamedThing 3-methyl-2-oxovaleric acid monarch-merged.owl owl:Class CHEBI:37041 biolink:NamedThing N-methyl-2-oxoglutaramic acid monarch-merged.owl owl:Class CHEBI:37318 biolink:NamedThing 2-oxopent-4-enoic acid monarch-merged.owl owl:Class CHEBI:48430 biolink:NamedThing 4-methyl-2-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:49268 biolink:NamedThing 5-amino-2-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:59354 biolink:NamedThing (3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoic acid monarch-merged.owl owl:Class CHEBI:64288 biolink:NamedThing 5-guanidino-3-methyl-2-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:65114 biolink:NamedThing 2-oxo-3-(5-oxofuran-2-ylidene)propanoic acid monarch-merged.owl owl:Class CHEBI:74122 biolink:NamedThing (3S)-3-methyl-2-oxo-3-phenylpropanoic acid monarch-merged.owl owl:Class CHEBI:83716 biolink:NamedThing 2-aminophenylglyoxylic acid monarch-merged.owl owl:Class CHEBI:8934 biolink:NamedThing (4-bromophenylsulfanyl)pyruvic acid monarch-merged.owl owl:Class CHEBI:35970 biolink:NamedThing 4-hydroxy monocarboxylic acid monarch-merged.owl owl:Class CHEBI:16817 biolink:NamedThing trans-4-hydroxycyclohexanecarboxylic acid monarch-merged.owl owl:Class CHEBI:30830 biolink:NamedThing 4-hydroxybutyric acid monarch-merged.owl owl:Class CHEBI:37125 biolink:NamedThing 5-hydroxy monocarboxylic acid monarch-merged.owl owl:Class CHEBI:45564 biolink:NamedThing 5-hydroxypentanoic acid monarch-merged.owl owl:Class CHEBI:64899 biolink:NamedThing [(1S)-4-hydroxy-2,2,3-trimethylcyclopent-3-enyl]acetic acid monarch-merged.owl owl:Class CHEBI:106304 biolink:NamedThing sphingomyelin d18:1/16:0 monarch-merged.owl owl:Class CHEBI:17636 biolink:NamedThing sphingomyelin d18:1 monarch-merged.owl owl:Class CHEBI:74535 biolink:NamedThing N-[(15Z)-tetracosenoyl]sphing-4-enine-1-phosphocholine monarch-merged.owl owl:Class CHEBI:83172 biolink:NamedThing N-tetracosenoylsphingosine-1-phosphocholine monarch-merged.owl owl:Class CHEBI:83358 biolink:NamedThing N-stearoylsphingosine-1-phosphocholine monarch-merged.owl owl:Class CHEBI:83360 biolink:NamedThing N-lignoceroylsphingosine-1-phosphocholine monarch-merged.owl owl:Class CHEBI:72514 biolink:NamedThing sphingomyelin 34:1 monarch-merged.owl owl:Class CHEBI:10642 biolink:NamedThing scyllo-inositol monarch-merged.owl owl:Class CHEBI:24848 biolink:NamedThing inositol Any cyclohexane-1,2,3,4,5,6-hexol. monarch-merged.owl inositols|inositol|1,2,3,4,5,6-cyclohexanehexol 0 C6H12O6 InChI=1S/C6H12O6/c7-1-2(8)4(10)6(12)5(11)3(1)9/h1-12H CDAISMWEOUEBRE-UHFFFAOYSA-N 180.15588 180.06339 OC1C(O)C(O)C(O)C(O)C1O chebi_ontology owl:Class CHEBI:17268 biolink:NamedThing myo-inositol monarch-merged.owl owl:Class CHEBI:23098 biolink:NamedThing chiro-inositol monarch-merged.owl owl:Class CHEBI:10668 biolink:NamedThing tRNA precursor monarch-merged.owl owl:Class CHEBI:60027 biolink:NamedThing polymer A polymer is a mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc.. monarch-merged.owl Polymer|Kunststoff Wikipedia:Polymer chebi_ontology owl:Class CHEBI:1269 biolink:NamedThing 2-polyprenylphenol monarch-merged.owl owl:Class CHEBI:17726 biolink:NamedThing [Glu(-Cys)]n-Gly monarch-merged.owl owl:Class CHEBI:2588 biolink:NamedThing Alkylated DNA monarch-merged.owl owl:Class CHEBI:3815 biolink:NamedThing Collagen monarch-merged.owl Collagen C4H6N2O3R2(C7H9N2O2R)n KEGG:C00211|CAS:9064-67-9 chebi_ontology owl:Class CHEBI:60029 biolink:NamedThing homopolymer monarch-merged.owl owl:Class CHEBI:60160 biolink:NamedThing polyester polymer monarch-merged.owl owl:Class CHEBI:60164 biolink:NamedThing ionic polymer An ionic polymer is a polymer, composed of ionic macromolecules. monarch-merged.owl polyionic polymer chebi_ontology owl:Class CHEBI:61445 biolink:NamedThing poly(amide) polymer monarch-merged.owl owl:Class CHEBI:64626 biolink:NamedThing teichuronic acid monarch-merged.owl owl:Class CHEBI:8290 biolink:NamedThing Poly(G) monarch-merged.owl owl:Class CHEBI:10696 biolink:NamedThing (3S)-3-hydroxy-L-aspartic acid monarch-merged.owl owl:Class CHEBI:48423 biolink:NamedThing 3-hydroxy-L-aspartic acid monarch-merged.owl owl:Class CHEBI:17576 biolink:NamedThing (3R)-3-hydroxy-L-aspartic acid monarch-merged.owl owl:Class CHEBI:10698 biolink:NamedThing 2-cis,6-trans,10-trans-geranylgeranyl diphosphate monarch-merged.owl owl:Class CHEBI:15831 biolink:NamedThing geranylgeranyl diphosphate monarch-merged.owl owl:Class CHEBI:139478 biolink:NamedThing nerylneryl diphosphate monarch-merged.owl owl:Class CHEBI:48861 biolink:NamedThing 2-trans,6-trans,10-trans-geranylgeranyl diphosphate monarch-merged.owl owl:Class CHEBI:10723 biolink:NamedThing trans-dec-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:139575 biolink:NamedThing monounsaturated fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:11614 biolink:NamedThing 2-methylbut-2-enoyl-coenzyme A monarch-merged.owl owl:Class CHEBI:131955 biolink:NamedThing (5E)-tetradecenoyl-CoA monarch-merged.owl owl:Class CHEBI:132269 biolink:NamedThing (3E)-octenoyl-CoA monarch-merged.owl owl:Class CHEBI:139083 biolink:NamedThing (E)-hex-4-enoyl-CoA monarch-merged.owl owl:Class CHEBI:139574 biolink:NamedThing octadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:15460 biolink:NamedThing trans-tetradec-11-enoyl-CoA monarch-merged.owl owl:Class CHEBI:15461 biolink:NamedThing cis-tetradec-11-enoyl-CoA monarch-merged.owl owl:Class CHEBI:15478 biolink:NamedThing 2-methylcrotonoyl-CoA monarch-merged.owl owl:Class CHEBI:15486 biolink:NamedThing 3-methylbut-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:15499 biolink:NamedThing 4-coumaroyl-CoA monarch-merged.owl owl:Class CHEBI:15503 biolink:NamedThing 2,3-didehydropimeloyl-CoA monarch-merged.owl owl:Class CHEBI:15513 biolink:NamedThing acryloyl-CoA monarch-merged.owl owl:Class CHEBI:15528 biolink:NamedThing itaconyl-CoA monarch-merged.owl owl:Class CHEBI:15540 biolink:NamedThing sinapoyl-CoA monarch-merged.owl owl:Class CHEBI:22961 biolink:NamedThing butenoyl-CoA monarch-merged.owl owl:Class CHEBI:23869 biolink:NamedThing dodecenoyl-CoA monarch-merged.owl owl:Class CHEBI:24311 biolink:NamedThing glutaconyl-CoA monarch-merged.owl owl:Class CHEBI:24549 biolink:NamedThing hexadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:26900 biolink:NamedThing tetradecenoyl-CoA monarch-merged.owl owl:Class CHEBI:27537 biolink:NamedThing trans-oct-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:27962 biolink:NamedThing pent-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:28706 biolink:NamedThing trans-hex-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:29126 biolink:NamedThing trans-dec-3-enoyl-CoA monarch-merged.owl owl:Class CHEBI:49179 biolink:NamedThing cis-3,4-didehydroadipoyl-CoA monarch-merged.owl owl:Class CHEBI:49180 biolink:NamedThing cis-3,4-didehydroadipoyl-CoA semialdehyde monarch-merged.owl owl:Class CHEBI:52975 biolink:NamedThing trans-2-hexacosenoyl-CoA monarch-merged.owl owl:Class CHEBI:63803 biolink:NamedThing (E)-2,3-didehydropristanoyl-CoA monarch-merged.owl owl:Class CHEBI:65087 biolink:NamedThing (9Z)-myristoleoyl-CoA monarch-merged.owl owl:Class CHEBI:68471 biolink:NamedThing (Z)-2,3-dehydroadipoyl-CoA monarch-merged.owl owl:Class CHEBI:70712 biolink:NamedThing (5Z)-tetradecenoyl-CoA monarch-merged.owl owl:Class CHEBI:71163 biolink:NamedThing 2,3-didehydroadipoyl-CoA monarch-merged.owl owl:Class CHEBI:72006 biolink:NamedThing (E)-isoheptadec-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:74037 biolink:NamedThing (11Z)-3-oxoicosa-11-enoyl-CoA monarch-merged.owl owl:Class CHEBI:74106 biolink:NamedThing erucoyl-CoA monarch-merged.owl owl:Class CHEBI:74126 biolink:NamedThing (11Z)-eicosenoyl-CoA monarch-merged.owl owl:Class CHEBI:74127 biolink:NamedThing (13Z)-3-oxodocosenoyl-CoA monarch-merged.owl owl:Class CHEBI:74133 biolink:NamedThing (15Z)-3-oxotetracosenoyl-CoA monarch-merged.owl owl:Class CHEBI:74142 biolink:NamedThing (15Z)-tetracosenoyl-CoA monarch-merged.owl owl:Class CHEBI:74149 biolink:NamedThing (17Z)-hexacosenoyl-CoA monarch-merged.owl owl:Class CHEBI:74398 biolink:NamedThing (9Z)-heptadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:74575 biolink:NamedThing (9Z)-pentadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:75061 biolink:NamedThing trans-2-icosenoyl-CoA monarch-merged.owl owl:Class CHEBI:75064 biolink:NamedThing trans-2-docosenoyl-CoA monarch-merged.owl owl:Class CHEBI:75068 biolink:NamedThing trans-2-tetracosenoyl-CoA monarch-merged.owl owl:Class CHEBI:76314 biolink:NamedThing trans-2-nonenoyl-CoA monarch-merged.owl owl:Class CHEBI:76490 biolink:NamedThing trans-octacos-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:76492 biolink:NamedThing trans-2-triacontenoyl-CoA monarch-merged.owl owl:Class CHEBI:76896 biolink:NamedThing (11Z)-3-oxooctadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:76905 biolink:NamedThing (13Z)-3-oxoicosenoyl-CoA monarch-merged.owl owl:Class CHEBI:76910 biolink:NamedThing (13Z)-icosenoyl-CoA monarch-merged.owl owl:Class CHEBI:77630 biolink:NamedThing trans-2-pentadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:78177 biolink:NamedThing trans-2-undecenoyl-CoA monarch-merged.owl owl:Class CHEBI:78179 biolink:NamedThing trans-2-heptadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:82967 biolink:NamedThing (11Z)-3-oxohexadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:85214 biolink:NamedThing 9-decenoyl-CoA monarch-merged.owl owl:Class CHEBI:85442 biolink:NamedThing trans-3-hexenoyl-CoA monarch-merged.owl owl:Class CHEBI:85560 biolink:NamedThing (5Z)-icosenoyl-CoA monarch-merged.owl owl:Class CHEBI:85889 biolink:NamedThing (Z)-hex-3-enoyl-CoA monarch-merged.owl owl:Class CHEBI:85939 biolink:NamedThing cis-3-octenoyl-CoA monarch-merged.owl owl:Class CHEBI:85960 biolink:NamedThing (3E)-nonenoyl-CoA monarch-merged.owl owl:Class CHEBI:86053 biolink:NamedThing 18-hydroxyoleoyl-CoA monarch-merged.owl owl:Class CHEBI:87259 biolink:NamedThing (E)-2-methylpentadec-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:87436 biolink:NamedThing 4-methylpent-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:87781 biolink:NamedThing (3S)-3-hydroxyoleoyl-CoA monarch-merged.owl owl:Class CHEBI:88007 biolink:NamedThing 3-oxooleoyl-CoA monarch-merged.owl owl:Class CHEBI:88080 biolink:NamedThing (5Z)-3-oxotetradecenoyl-CoA monarch-merged.owl owl:Class CHEBI:88083 biolink:NamedThing (3E)-tetradecenoyl-CoA monarch-merged.owl owl:Class CHEBI:88090 biolink:NamedThing (7Z)-3-oxohexadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:90277 biolink:NamedThing (2E)-tricosenoyl-CoA monarch-merged.owl owl:Class CHEBI:90362 biolink:NamedThing 2-methylhexenoyl-CoA monarch-merged.owl owl:Class CHEBI:50998 biolink:NamedThing trans-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:15471 biolink:NamedThing trans-dodec-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:28935 biolink:NamedThing (E)-hexadec-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:50570 biolink:NamedThing trans-2-octadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:76904 biolink:NamedThing (2E,11Z)-octadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:76909 biolink:NamedThing (2E,13Z)-icosadienoyl-CoA monarch-merged.owl owl:Class CHEBI:78178 biolink:NamedThing (2E,9Z)-hexadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:78181 biolink:NamedThing (2E,9E)-octadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:78187 biolink:NamedThing (2E,9Z)-octadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:78190 biolink:NamedThing (2E,9Z,12Z)-octadecatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:85555 biolink:NamedThing (2E,4Z)-dienoyl-CoA monarch-merged.owl owl:Class CHEBI:85556 biolink:NamedThing trans,trans-2,4-dienoyl-CoA monarch-merged.owl owl:Class CHEBI:61907 biolink:NamedThing medium-chain fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:132271 biolink:NamedThing (2E,5Z)-octadienoyl-CoA monarch-merged.owl owl:Class CHEBI:138941 biolink:NamedThing 2-hydroxyoctanoyl-CoA monarch-merged.owl owl:Class CHEBI:138959 biolink:NamedThing 2-hydroxydecanoyl-CoA monarch-merged.owl owl:Class CHEBI:139024 biolink:NamedThing 2-hydroxydodecanoyl-CoA monarch-merged.owl owl:Class CHEBI:139121 biolink:NamedThing (3E,5Z)-dodecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:139304 biolink:NamedThing 2-hydroxyhexanoyl-CoA monarch-merged.owl owl:Class CHEBI:139362 biolink:NamedThing 2-hydroxy-3-methylundecanoyl-CoA monarch-merged.owl owl:Class CHEBI:139363 biolink:NamedThing 2-hydroxy-3-methylnonanoyl-CoA monarch-merged.owl owl:Class CHEBI:139372 biolink:NamedThing 3-methylnonanoyl-CoA monarch-merged.owl owl:Class CHEBI:139376 biolink:NamedThing 2-hydroxy-3-methyldodecanoyl-CoA monarch-merged.owl owl:Class CHEBI:139392 biolink:NamedThing 3-methyldodecanoyl-CoA monarch-merged.owl owl:Class CHEBI:15521 biolink:NamedThing lauroyl-CoA monarch-merged.owl owl:Class CHEBI:15533 biolink:NamedThing octanoyl-CoA monarch-merged.owl owl:Class CHEBI:27540 biolink:NamedThing hexanoyl-CoA monarch-merged.owl owl:Class CHEBI:27668 biolink:NamedThing (S)-3-hydroxylauroyl-CoA monarch-merged.owl owl:Class CHEBI:27770 biolink:NamedThing nonanoyl-CoA monarch-merged.owl owl:Class CHEBI:28493 biolink:NamedThing decanoyl-CoA monarch-merged.owl owl:Class CHEBI:29119 biolink:NamedThing (2E,4Z)-deca-2,4-dienoyl-CoA monarch-merged.owl owl:Class CHEBI:37283 biolink:NamedThing heptanoyl-CoA monarch-merged.owl owl:Class CHEBI:63856 biolink:NamedThing 4,8-dimethylnonanoyl-CoA monarch-merged.owl owl:Class CHEBI:67089 biolink:NamedThing 3,5,7-trioxododecanoyl-CoA monarch-merged.owl owl:Class CHEBI:71437 biolink:NamedThing isotridecanoyl-CoA monarch-merged.owl owl:Class CHEBI:74451 biolink:NamedThing (R)-3-hydroxylauroyl-CoA monarch-merged.owl owl:Class CHEBI:74474 biolink:NamedThing (R)-3-hydroxyhexanoyl-CoA monarch-merged.owl owl:Class CHEBI:78176 biolink:NamedThing undecanoyl-CoA monarch-merged.owl owl:Class CHEBI:85075 biolink:NamedThing 3-methylundecanoyl-CoA monarch-merged.owl owl:Class CHEBI:85439 biolink:NamedThing trans,trans-2,4-hexadienoyl-CoA monarch-merged.owl owl:Class CHEBI:85504 biolink:NamedThing 2,6-dimethylheptanoyl-CoA monarch-merged.owl owl:Class CHEBI:85557 biolink:NamedThing trans-3-cis-5-octadienoyl-CoA monarch-merged.owl owl:Class CHEBI:86321 biolink:NamedThing 3-hydroxyoctanoyl-CoA monarch-merged.owl owl:Class CHEBI:86338 biolink:NamedThing 3-hydroxydecanoyl-CoA monarch-merged.owl owl:Class CHEBI:90224 biolink:NamedThing 2-methylhexanoyl-CoA monarch-merged.owl owl:Class CHEBI:10782 biolink:NamedThing (S)-(-)-perillyl alcohol monarch-merged.owl owl:Class CHEBI:15420 biolink:NamedThing perillyl alcohol monarch-merged.owl owl:Class CHEBI:145806 biolink:NamedThing (R)-(+)-perillyl alcohol monarch-merged.owl owl:Class CHEBI:10790 biolink:NamedThing methylenediurea monarch-merged.owl owl:Class CHEBI:47857 biolink:NamedThing ureas monarch-merged.owl urea derivatives CHEBI:36947|CHEBI:27220 chebi_ontology owl:Class CHEBI:134043 biolink:NamedThing phenylureas monarch-merged.owl owl:Class CHEBI:15569 biolink:NamedThing N-(carboxyaminomethyl)urea monarch-merged.owl owl:Class CHEBI:15609 biolink:NamedThing N-(aminomethyl)urea monarch-merged.owl owl:Class CHEBI:15676 biolink:NamedThing allantoin An imidazolidine-2,4-dione that is 5-aminohydantoin in which a carbamoyl group is attached to the exocyclic nitrogen. monarch-merged.owl 5-Ureidohydantoin|5-Ureido-2,4-imidazolidindione|4-ureido-2,5-imidazolidinedione|N-(2,5-dioxoimidazolidin-4-yl)urea|(2,5-Dioxo-4-imidazolidinyl)urea|Glyoxyldiureide|allantoin|N-(2,5-Dioxo-4-imidazolidinyl)urea|Allantoin|2,5-Dioxo-4-imidazolidinyl-urea 0 C4H6N4O3 InChI=1S/C4H6N4O3/c5-3(10)6-1-2(9)8-4(11)7-1/h1H,(H3,5,6,10)(H2,7,8,9,11) POJWUDADGALRAB-UHFFFAOYSA-N 158.11560 158.04399 NC(=O)NC1NC(=O)NC1=O CAS:97-59-6|PMID:11157020|KNApSAcK:C00007468|Patent:US2158098|LINCS:LSM-5190|PMID:17190852|MetaCyc:ALLANTOIN|HMDB:HMDB0000462|KEGG:D00121|KEGG:C01551|Wikipedia:Allantoin|Reaxys:83514|Drug_Central:4268|PMID:14619112 CHEBI:2594|CHEBI:22354|CHEBI:13761 chebi_ontology owl:Class CHEBI:16282 biolink:NamedThing 2-ureidoglycine monarch-merged.owl owl:Class CHEBI:16481 biolink:NamedThing N-(hydroxymethyl)urea monarch-merged.owl owl:Class CHEBI:17443 biolink:NamedThing L-homocitrulline monarch-merged.owl owl:Class CHEBI:17536 biolink:NamedThing allantoate monarch-merged.owl owl:Class CHEBI:21689 biolink:NamedThing N-carbamoyl-amino acid monarch-merged.owl owl:Class CHEBI:26831 biolink:NamedThing N,N''-sulfonyldiurea monarch-merged.owl owl:Class CHEBI:28909 biolink:NamedThing iprodione monarch-merged.owl owl:Class CHEBI:30837 biolink:NamedThing allantoic acid monarch-merged.owl owl:Class CHEBI:36946 biolink:NamedThing thiourea monarch-merged.owl owl:Class CHEBI:36954 biolink:NamedThing condensed ureas monarch-merged.owl owl:Class CHEBI:44423 biolink:NamedThing hydroxyurea A member of the class of ureas that is urea in which one of the hydrogens is replaced by a hydroxy group. An antineoplastic used in the treatment of chronic myeloid leukaemia as well as for sickle-cell disease. monarch-merged.owl N-hydroxyurea|hydroxycarbamide|Hydroxycarbamid|hydrea|Hydroxyharnstoff|carbamohydroxamic acid|carbamyl hydroxamate|oxyurea|carbamohydroximic acid|N-carbamoylhydroxylamine|carbamoyl oxime|hydroxyurea|Hydroxycarbamide|N-HYDROXYUREA|hidroxicarbamida|hydroxycarbamidum|Hydroxyurea 0 CH4N2O2 InChI=1S/CH4N2O2/c2-1(4)3-5/h5H,(H3,2,3,4) VSNHCAURESNICA-UHFFFAOYSA-N 76.05474 76.02728 NC(=O)NO PMID:11364534|PMID:11285159|DrugBank:DB01005|PMID:15994344|KEGG:D00341|PMID:23318979|CAS:127-07-1|PDBeChem:NHY|PMID:15772364|PMID:11298103|PMID:11391710|Beilstein:1741548|PMID:22983419|Drug_Central:1399|PMID:11365149|MetaCyc:HYDROXY-UREA|Patent:US2705727|PMID:9271088|Reaxys:1741548|PMID:12107454|PMID:16356682|Gmelin:130423|PMID:23643402|Wikipedia:Hydroxyurea|PMID:14988684|HMDB:HMDB0015140|PMID:23696560|KEGG:C07044 CHEBI:5816|CHEBI:44420 chebi_ontology owl:Class CHEBI:49052 biolink:NamedThing ureidocarboxylic acid monarch-merged.owl owl:Class CHEBI:57714 biolink:NamedThing 2-ureidoglycine zwitterion monarch-merged.owl owl:Class CHEBI:59889 biolink:NamedThing ureidoperacrylic acid monarch-merged.owl owl:Class CHEBI:59890 biolink:NamedThing ureidoacrylic acid monarch-merged.owl owl:Class CHEBI:63249 biolink:NamedThing (Z)-2-methylureidoperacrylic acid monarch-merged.owl owl:Class CHEBI:73536 biolink:NamedThing O-ureido-L-serine monarch-merged.owl owl:Class CHEBI:74212 biolink:NamedThing O-ureido-D-serine monarch-merged.owl owl:Class CHEBI:74266 biolink:NamedThing N-acylurea monarch-merged.owl owl:Class CHEBI:74345 biolink:NamedThing 1-(5-hydroxy-2-oxo-2,3-dihydroimidazol-4-yl)urea An imidazolidinone that is imidazolin-2-one substituted at positions 4 and 5 by hydroxy and ureido groups respectively. monarch-merged.owl 2-oxo-4-hydroxy-5-ureidoimidazoline|allantoin, enol-form|1-(5-hydroxy-2-oxo-2,3-dihydro-1H-imidazol-4-yl)urea 0 C4H6N4O3 InChI=1S/C4H6N4O3/c5-3(10)6-1-2(9)8-4(11)7-1/h9H,(H3,5,6,10)(H2,7,8,11) MLVVTNIFHMERMU-UHFFFAOYSA-N 158.11540 158.04399 NC(=O)Nc1[nH]c(=O)[nH]c1O PMID:20826786 chebi_ontology owl:Class CHEBI:74637 biolink:NamedThing N(6)-L-threonylcarbamoyladenine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74649 biolink:NamedThing 2-thio-N(6)-L-threonylcarbamoyladenine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:9889 biolink:NamedThing urea-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:10836 biolink:NamedThing 2',3,4,4',6'-pentahydroxychalcone monarch-merged.owl owl:Class CHEBI:136826 biolink:NamedThing xanthogalenol monarch-merged.owl owl:Class CHEBI:136828 biolink:NamedThing 4'-O-methylxanthohumol monarch-merged.owl owl:Class CHEBI:15413 biolink:NamedThing 2',4,4',6'-tetrahydroxychalcone monarch-merged.owl owl:Class CHEBI:27618 biolink:NamedThing chalcone monarch-merged.owl owl:Class CHEBI:310312 biolink:NamedThing isoliquiritigenin monarch-merged.owl owl:Class CHEBI:519567 biolink:NamedThing 2'-O-methylisoliquiritigenin monarch-merged.owl owl:Class CHEBI:66331 biolink:NamedThing xanthohumol monarch-merged.owl owl:Class CHEBI:80489 biolink:NamedThing desmethylxanthohumol monarch-merged.owl owl:Class CHEBI:10956 biolink:NamedThing (E)-cinnamoyl-CoA monarch-merged.owl owl:Class CHEBI:15463 biolink:NamedThing cinnamoyl-CoA monarch-merged.owl owl:Class CHEBI:10965 biolink:NamedThing (R)-2,3,4,5-tetrahydrodipicolinate(2-) monarch-merged.owl owl:Class CHEBI:11408 biolink:NamedThing 2,3,4,5-tetrahydrodipicolinate(2-) monarch-merged.owl owl:Class CHEBI:16845 biolink:NamedThing (S)-2,3,4,5-tetrahydrodipicolinate(2-) monarch-merged.owl owl:Class CHEBI:10970 biolink:NamedThing (R)-2-benzylsuccinyl-CoA monarch-merged.owl owl:Class CHEBI:22746 biolink:NamedThing 2-benzylsuccinyl-CoA monarch-merged.owl owl:Class CHEBI:10979 biolink:NamedThing (R)-3-[(R)-3-hydroxybutanoyloxy]butanoate monarch-merged.owl owl:Class CHEBI:36059 biolink:NamedThing hydroxy monocarboxylic acid anion Any monocarboxylic acid anion carrying at least one hydroxy substituent. monarch-merged.owl hydroxymonocarboxylic acid anion|hydroxymonocarboxylic acid anions|hydroxy monocarboxylic acid anions chebi_ontology owl:Class CHEBI:11173 biolink:NamedThing 1,4-dihydroxy-2-naphthoate monarch-merged.owl owl:Class CHEBI:11320 biolink:NamedThing 13-hydroxydocosanoate monarch-merged.owl owl:Class CHEBI:11424 biolink:NamedThing 2,3-dihydroxy-3-methylbutanoate monarch-merged.owl owl:Class CHEBI:11805 biolink:NamedThing 3-hydroxyisobutyrate monarch-merged.owl owl:Class CHEBI:11812 biolink:NamedThing 3-hydroxy-3-methyl-2-oxobutanoate monarch-merged.owl owl:Class CHEBI:11955 biolink:NamedThing 4-amino-3-hydroxybutanoate The conjugate base of gamma-amino-beta-hydroxybutyric acid arising from deprotonation of the carboxy group. monarch-merged.owl 4-Amino-3-hydroxybutanoate -1 C4H8NO3 InChI=1S/C4H9NO3/c5-2-3(6)1-4(7)8/h3,6H,1-2,5H2,(H,7,8)/p-1 YQGDEPYYFWUPGO-UHFFFAOYSA-M 118.11126 118.05097 NCC(O)CC([O-])=O KEGG:C03678|CAS:352-21-6 chebi_ontology owl:Class CHEBI:133744 biolink:NamedThing homovanillate A hydroxy monocarboxylic acid anion which is obtained by deprotonation of the carboxy group of homovanillic acid. monarch-merged.owl 3-methoxy-4-hydroxyphenylacetate|(4-hydroxy-3-methoxyphenyl)acetate -1 C9H9O4 InChI=1S/C9H10O4/c1-13-8-4-6(5-9(11)12)2-3-7(8)10/h2-4,10H,5H2,1H3,(H,11,12)/p-1 QRMZSPFSDQBLIX-UHFFFAOYSA-M 181.166 181.05063 C1=C(C(=CC(=C1)CC([O-])=O)OC)O chebi_ontology owl:Class CHEBI:133792 biolink:NamedThing erythronate monarch-merged.owl owl:Class CHEBI:134178 biolink:NamedThing all-trans-4-hydroxyretinoate monarch-merged.owl owl:Class CHEBI:136590 biolink:NamedThing 4-O-phosphonato-D-threonate(3-) monarch-merged.owl owl:Class CHEBI:136592 biolink:NamedThing (S)-2-hydroxy-3-oxo-4-(phosphonatooxy)butanoate(3-) monarch-merged.owl owl:Class CHEBI:136593 biolink:NamedThing (R)-2-hydroxy-3-oxo-4-(phosphonatooxy)butanoate(3-) monarch-merged.owl owl:Class CHEBI:136596 biolink:NamedThing 4-hydroxy monocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:136668 biolink:NamedThing (R)-3,4-dihydroxy-2-oxobutanoate monarch-merged.owl owl:Class CHEBI:136669 biolink:NamedThing (S)-3,4-dihydroxy-2-oxobutanoate monarch-merged.owl owl:Class CHEBI:136670 biolink:NamedThing (S)-2,4-dihydroxy-3-oxobutanoate monarch-merged.owl owl:Class CHEBI:136742 biolink:NamedThing 2-O-[alpha-D-glucosyl-(1->6)-alpha-D-glucosyl]-D-glycerate monarch-merged.owl owl:Class CHEBI:136743 biolink:NamedThing 2-O-[6-O-octanoyl-alpha-D-glucosyl-(1->6)-alpha-D-glucosyl]-D-glycerate monarch-merged.owl owl:Class CHEBI:136810 biolink:NamedThing 12-hydroxyjasmonates monarch-merged.owl owl:Class CHEBI:136812 biolink:NamedThing 11-hydroxyjasmonate monarch-merged.owl owl:Class CHEBI:136890 biolink:NamedThing 3-dimethylallyl-4-hydroxymandelate monarch-merged.owl owl:Class CHEBI:138340 biolink:NamedThing (2R,3S)-2-alkyl-3-hydroxyalkanoate monarch-merged.owl owl:Class CHEBI:139258 biolink:NamedThing all-trans-18-hydroxyretinoate monarch-merged.owl owl:Class CHEBI:140232 biolink:NamedThing sordaricin(1-) monarch-merged.owl owl:Class CHEBI:140383 biolink:NamedThing (3R)-3-{[(3R)-3-{[(3R)-3-{[(3R)-3-{[(3R)-3-hydroxybutanoyl]oxy}butanoyl]oxy}butanoyl]oxy}butanoyl]oxy}butanoate monarch-merged.owl owl:Class CHEBI:140384 biolink:NamedThing (3R)-3-{[(3R)-3-{[(3R)-3-{[(3R)-3-hydroxybutanoyl]oxy}butanoyl]oxy}butanoyl]oxy}butanoate monarch-merged.owl owl:Class CHEBI:140385 biolink:NamedThing (3R)-3-{[(3R)-3-{[(3R)-3-hydroxybutanoyl]oxy}butanoyl]oxy}butanoate monarch-merged.owl owl:Class CHEBI:145989 biolink:NamedThing 3-phosphonatoshikimate(3-) monarch-merged.owl owl:Class CHEBI:15683 biolink:NamedThing (R)-10-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:15980 biolink:NamedThing (R)-pantoate monarch-merged.owl owl:Class CHEBI:15992 biolink:NamedThing 1-hydroxy-2-naphthoate monarch-merged.owl owl:Class CHEBI:16169 biolink:NamedThing homogentisate monarch-merged.owl owl:Class CHEBI:16230 biolink:NamedThing 5-hydroxypentanoate monarch-merged.owl owl:Class CHEBI:16331 biolink:NamedThing phloretate monarch-merged.owl owl:Class CHEBI:16510 biolink:NamedThing 3-hydroxypropionate monarch-merged.owl owl:Class CHEBI:16815 biolink:NamedThing enol-phenylpyruvate monarch-merged.owl owl:Class CHEBI:17000 biolink:NamedThing tropate monarch-merged.owl owl:Class CHEBI:17180 biolink:NamedThing 3-hydroxypyruvate monarch-merged.owl owl:Class CHEBI:17612 biolink:NamedThing (3,4-dihydroxyphenyl)acetate A dihydroxy monocarboxylic acid anion that is the conjugate base of (3,4-dihydroxyphenyl)acetic acid, arising from deprotonation of the carboxy group. monarch-merged.owl 3,4-dihydroxyphenylacetate|(3,4-dihydroxyphenyl)acetate|homoprotocatechuate -1 C8H7O4 InChI=1S/C8H8O4/c9-6-2-1-5(3-7(6)10)4-8(11)12/h1-3,9-10H,4H2,(H,11,12)/p-1 CFFZDZCDUFSOFZ-UHFFFAOYSA-M 167.13878 167.03498 Oc1ccc(CC([O-])=O)cc1O UM-BBD_compID:c0272|KEGG:C01161 CHEBI:19889|CHEBI:11696|CHEBI:11697 chebi_ontology owl:Class CHEBI:20070 biolink:NamedThing 3-hydroxyhexanoate monarch-merged.owl owl:Class CHEBI:24675 biolink:NamedThing hydroxybenzoate Any benzoate derivative carrying a single carboxylate group and at least one hydroxy substituent. monarch-merged.owl hydroxybenzoates owl:Class CHEBI:24773 biolink:NamedThing 3-(imidazol-5-yl)lactate monarch-merged.owl owl:Class CHEBI:24996 biolink:NamedThing lactate A hydroxy monocarboxylic acid anion that is the conjugate base of lactic acid, arising from deprotonation of the carboxy group. monarch-merged.owl 2-hydroxypropionate|2-hydroxypropanoic acid, ion(1-)|beta-lactate|lactate|b-lactate|MeCH(OH)CO2 anion|2-hydroxypropanoate -1 C3H5O3 InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/p-1 JVTAAEKCZFNVCJ-UHFFFAOYSA-M 89.07000 89.02442 CC(O)C([O-])=O Gmelin:240074|MetaCyc:Lactate|CAS:113-21-3|Beilstein:3587719|KEGG:C01432 chebi_ontology owl:Class CHEBI:25147 biolink:NamedThing mandelate monarch-merged.owl 2-hydroxy-2-(4-hydroxyphenyl)acetate|alpha-hydroxybenzeneacetate|hydroxy(phenyl)acetate|alpha-hydroxybenzeneacetic acid, ion(1-)|mandelate ion -1 C8H7O3 InChI=1S/C8H8O3/c9-7(8(10)11)6-4-2-1-3-5-6/h1-5,7,9H,(H,10,11)/p-1 IWYDHOAUDWTVEP-UHFFFAOYSA-M 151.13938 151.04007 OC(C([O-])=O)c1ccccc1 Gmelin:328159|Beilstein:4135334|Beilstein:3905858|CAS:769-61-9 chebi_ontology owl:Class CHEBI:25350 biolink:NamedThing mevalonate monarch-merged.owl owl:Class CHEBI:27622 biolink:NamedThing vanillylmandelate A hydroxy monocarboxylic acid anion that is the conjugate base of vanillylmandelic acid. monarch-merged.owl 3-Methoxy-4-hydroxymandelate|vanilmandelate|2-hydroxy-2-(4-hydroxy-3-methoxyphenyl)acetate -1 C9H9O5 InChI=1S/C9H10O5/c1-14-7-4-5(2-3-6(7)10)8(11)9(12)13/h2-4,8,10-11H,1H3,(H,12,13)/p-1 CGQCWMIAEPEHNQ-UHFFFAOYSA-M 197.16480 197.04555 COc1cc(ccc1O)C(O)C([O-])=O KEGG:C05584 CHEBI:1573|CHEBI:20105 chebi_ontology owl:Class CHEBI:28961 biolink:NamedThing 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:29805 biolink:NamedThing glycolate monarch-merged.owl owl:Class CHEBI:32364 biolink:NamedThing 3-dehydroquinate monarch-merged.owl owl:Class CHEBI:33871 biolink:NamedThing glycerate monarch-merged.owl owl:Class CHEBI:36208 biolink:NamedThing shikimate monarch-merged.owl owl:Class CHEBI:36659 biolink:NamedThing 3-(4-hydroxyphenyl)lactate monarch-merged.owl owl:Class CHEBI:49256 biolink:NamedThing (S)-2-acetyl-2-hydroxybutanoate monarch-merged.owl owl:Class CHEBI:49258 biolink:NamedThing (2R,3R)-2,3-dihydroxy-3-methylpentanoate monarch-merged.owl owl:Class CHEBI:53338 biolink:NamedThing 3-hydroxy-3-methyl-2-oxopentanoate monarch-merged.owl owl:Class CHEBI:55535 biolink:NamedThing (R)-2-hydroxy-4-methylpentanoate monarch-merged.owl owl:Class CHEBI:57296 biolink:NamedThing (-)-ureidoglycolate monarch-merged.owl owl:Class CHEBI:57413 biolink:NamedThing (1S,3R,4S)-3,4-dihydroxycyclohexane-1-carboxylate monarch-merged.owl owl:Class CHEBI:57414 biolink:NamedThing (1S,4S)-4-hydroxy-3-oxocyclohexane-1-carboxylate monarch-merged.owl owl:Class CHEBI:57441 biolink:NamedThing 2,3-diketogulonate monarch-merged.owl owl:Class CHEBI:57442 biolink:NamedThing (4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate monarch-merged.owl owl:Class CHEBI:57448 biolink:NamedThing (5Z,9E,12S,14Z)-8,11,12-trihydroxyicosa-5,9,14-trienoate monarch-merged.owl owl:Class CHEBI:57449 biolink:NamedThing (5Z,9E,14Z)-(8xi,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoate monarch-merged.owl owl:Class CHEBI:57460 biolink:NamedThing 20-hydroxy-leukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:57461 biolink:NamedThing leukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:57468 biolink:NamedThing 7(S),8(S)-DiHODE(1-) monarch-merged.owl owl:Class CHEBI:57548 biolink:NamedThing o-orsellinate depsidate(1-) monarch-merged.owl owl:Class CHEBI:57561 biolink:NamedThing L-threonate monarch-merged.owl owl:Class CHEBI:57575 biolink:NamedThing trans-5-O-(4-coumaroyl)-D-quinate monarch-merged.owl owl:Class CHEBI:57576 biolink:NamedThing 2,3-dihydroxy-2,3-dihydrobenzoate monarch-merged.owl owl:Class CHEBI:57587 biolink:NamedThing stipitatate(2-) monarch-merged.owl owl:Class CHEBI:57628 biolink:NamedThing 2-(3,4-dihydroxybenzoyloxy)-4,6-dihydroxybenzoate monarch-merged.owl owl:Class CHEBI:57744 biolink:NamedThing 2-(alpha-D-mannosyl)-3-phosphonatoglycerate(3-) monarch-merged.owl owl:Class CHEBI:57745 biolink:NamedThing 4-hydroxy-1-pyrroline-2-carboxylate monarch-merged.owl owl:Class CHEBI:57752 biolink:NamedThing (S)-3-(imidazol-5-yl)lactate monarch-merged.owl owl:Class CHEBI:57754 biolink:NamedThing trans-5-O-caffeoyl-D-quinate monarch-merged.owl owl:Class CHEBI:57768 biolink:NamedThing 4-coumaroylshikimate monarch-merged.owl owl:Class CHEBI:57770 biolink:NamedThing trans-caffeate monarch-merged.owl owl:Class CHEBI:57774 biolink:NamedThing 2-acetyllactate monarch-merged.owl owl:Class CHEBI:57800 biolink:NamedThing 3-ADP-glycerate(3-) monarch-merged.owl owl:Class CHEBI:57849 biolink:NamedThing (R)-4-dehydropantoate monarch-merged.owl owl:Class CHEBI:57906 biolink:NamedThing trans-4-hydroxycyclohexanecarboxylate monarch-merged.owl owl:Class CHEBI:57949 biolink:NamedThing 6-phosphonato-5-dehydro-2-deoxy-D-gluconate(3-) monarch-merged.owl owl:Class CHEBI:57958 biolink:NamedThing (R)-2,4-dihydroxy-3-oxobutanoate monarch-merged.owl owl:Class CHEBI:57978 biolink:NamedThing 2-hydroxy-3-oxopropanoate monarch-merged.owl owl:Class CHEBI:58015 biolink:NamedThing 7,8-dihydro-7,8-dihydroxykynurenate monarch-merged.owl owl:Class CHEBI:58068 biolink:NamedThing 2-hydroxy-6-oxohexa-2,4-dienoate monarch-merged.owl owl:Class CHEBI:58123 biolink:NamedThing (2S)-2-hydroxy monocarboxylic acid anion A hydroxy monocarboxylic acid anion where the hydroxy group is placed at position 2 (alpha to the carboxy group) and has (S)-stereochemistry; major species at pH 7.3. monarch-merged.owl (2S)-2-hydroxy monocarboxylate|(2S)-alpha-hydroxy monocarboxylic acid anion|(2S)-2-hydroxycarboxylate|(S)-2-hydroxyacid anion|(S)-2-hydroxyacid anions|(2S)-2-hydroxy monocarboxylic acid anions|(2S)-alpha-hydroxy monocarboxylic acid anions|a (2S)-2-hydroxycarboxylate|(2S)-2-hydroxy monocarboxylates -1 C2H2O3R 74.03550 74.00039 O[C@@H]([*])C([O-])=O PMID:10850983 CHEBI:70794|CHEBI:61394 chebi_ontology owl:Class CHEBI:58129 biolink:NamedThing cis-caffeate monarch-merged.owl owl:Class CHEBI:58135 biolink:NamedThing 2-(hydroxymethyl)-4-oxobutanoate monarch-merged.owl owl:Class CHEBI:58146 biolink:NamedThing (R)-5-phosphonatomevalonate(3-) monarch-merged.owl owl:Class CHEBI:58149 biolink:NamedThing 3-hydroxyphenylacetate monarch-merged.owl owl:Class CHEBI:58152 biolink:NamedThing cis-4-coumarate monarch-merged.owl owl:Class CHEBI:58156 biolink:NamedThing N-adenylylanthranilate monarch-merged.owl owl:Class CHEBI:58171 biolink:NamedThing 7,8-dihydroxykynurenate monarch-merged.owl owl:Class CHEBI:58181 biolink:NamedThing trans-beta-D-glucosyl-2-hydroxycinnamate monarch-merged.owl owl:Class CHEBI:58218 biolink:NamedThing 9-riburonosylhypoxanthine(1-) monarch-merged.owl owl:Class CHEBI:58219 biolink:NamedThing mevaldate monarch-merged.owl owl:Class CHEBI:58222 biolink:NamedThing 4-hydroxy-2-oxopentanoate monarch-merged.owl owl:Class CHEBI:58237 biolink:NamedThing cis-4,5-dihydroxycyclohexa-2,6-diene-1,2-dicarboxylate(2-) monarch-merged.owl owl:Class CHEBI:58272 biolink:NamedThing 3-phosphonato-D-glycerate(3-) monarch-merged.owl owl:Class CHEBI:58279 biolink:NamedThing 3-(3,4-dihydroxyphenyl)lactate monarch-merged.owl owl:Class CHEBI:58289 biolink:NamedThing 2-phosphonato-D-glycerate(3-) monarch-merged.owl owl:Class CHEBI:58306 biolink:NamedThing rifamycin B(2-) monarch-merged.owl owl:Class CHEBI:58314 biolink:NamedThing (2R)-2-hydroxy monocarboxylic acid anion A hydroxy monocarboxylic acid anion where the hydroxy group is placed at position 2 (alpha to the carboxy group) and has (R)-stereochemistry; major species at pH 7.3. monarch-merged.owl (2R)-2-hydroxy monocarboxylic acid anions|a (2R)-2-hydroxycarboxylate|(2R)-2-hydroxycarboxylate|(R)-2-hydroxyacid anions|(R)-2-hydroxyacid anion|(2R)-alpha-hydroxy monocarboxylic acid anions|(2R)-alpha-hydroxy monocarboxylic acid anion -1 C2H2O3R 74.036 74.00039 O[C@H]([*])C([O-])=O MetaCyc:2R-hydroxy-carboxylates chebi_ontology owl:Class CHEBI:58420 biolink:NamedThing cis-5,6-dihydroxy-4-isopropylcyclohexa-1,3-dienecarboxylate monarch-merged.owl owl:Class CHEBI:58476 biolink:NamedThing (2S)-2-hydroxy-2-methyl-3-oxobutanoate monarch-merged.owl owl:Class CHEBI:58490 biolink:NamedThing (+)-8'-hydroxyabscisate monarch-merged.owl owl:Class CHEBI:58607 biolink:NamedThing 3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1(10),2-dien-4-oate monarch-merged.owl owl:Class CHEBI:58683 biolink:NamedThing 3-sulfonatolactate(2-) monarch-merged.owl owl:Class CHEBI:58760 biolink:NamedThing demethylsulochrin(1-) monarch-merged.owl owl:Class CHEBI:58764 biolink:NamedThing (2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate monarch-merged.owl owl:Class CHEBI:58766 biolink:NamedThing 4-O-phosphonato-D-erythronate(3-) monarch-merged.owl owl:Class CHEBI:58768 biolink:NamedThing (1R,6S)-1,6-dihydroxy-4-methylcyclohexa-2,4-diene-1-carboxylate monarch-merged.owl owl:Class CHEBI:58796 biolink:NamedThing (9S,10S)-10-hydroxy-9-(phosphonatooxy)octadecanoate monarch-merged.owl owl:Class CHEBI:58797 biolink:NamedThing (S,S)-9,10-dihydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:58896 biolink:NamedThing 2-hydroxy carboxylate monarch-merged.owl owl:Class CHEBI:59835 biolink:NamedThing hydroxy fatty acid anion The conjugate base of any hydroxy fatty acid, formed by deprotonation of the carboxylic acid moiety. monarch-merged.owl OH-FA-anions|OH-fatty acid anions|hydroxy fatty acid anions|OH-fatty acid anion|OH-FA anion chebi_ontology owl:Class CHEBI:60078 biolink:NamedThing 4-O-feruloyl-D-quinate monarch-merged.owl owl:Class CHEBI:60108 biolink:NamedThing 3-[(5S,6R)-5,6-dihydroxycyclohexa-1,3-dienyl]acrylate monarch-merged.owl owl:Class CHEBI:60109 biolink:NamedThing 3-[(5R,6S)-5,6-dihydroxycyclohexa-1,3-dienyl]acrylate monarch-merged.owl owl:Class CHEBI:60885 biolink:NamedThing (2E,4E)-6-(2-aminophenyl)-2-hydroxy-6-oxohexa-2,4-dienoate monarch-merged.owl owl:Class CHEBI:61294 biolink:NamedThing (R)-4-phosphonatopantoate(3-) monarch-merged.owl owl:Class CHEBI:62223 biolink:NamedThing 2-(beta-D-glucosyloxy)-cis-cinnamate monarch-merged.owl owl:Class CHEBI:62239 biolink:NamedThing 3-hydroxydecanoyl-3-hydroxydecanoate monarch-merged.owl owl:Class CHEBI:62510 biolink:NamedThing 2-O-(alpha-D-glucopyranosyl)-D-glycerate monarch-merged.owl owl:Class CHEBI:64669 biolink:NamedThing 2-hydroxy-3-methylbutyrate monarch-merged.owl owl:Class CHEBI:64894 biolink:NamedThing [(1S)-4-hydroxy-2,2,3-trimethylcyclopent-3-enyl]acetate monarch-merged.owl owl:Class CHEBI:66963 biolink:NamedThing Delta(9)-tetrahydrocannabinolate monarch-merged.owl owl:Class CHEBI:68649 biolink:NamedThing pentalenate monarch-merged.owl owl:Class CHEBI:70779 biolink:NamedThing 1-deoxy-11beta-hydroxypentalenate monarch-merged.owl owl:Class CHEBI:74931 biolink:NamedThing tetracenomycin F1(1-) monarch-merged.owl owl:Class CHEBI:74934 biolink:NamedThing tetracenomycin D3(1-) monarch-merged.owl owl:Class CHEBI:75717 biolink:NamedThing (3R,4R)-3,4-dihydroxycyclohexa-1,5-diene-1-carboxylate monarch-merged.owl owl:Class CHEBI:76159 biolink:NamedThing tetracenomycin F2(1-) monarch-merged.owl owl:Class CHEBI:77842 biolink:NamedThing stipitatate(1-) monarch-merged.owl owl:Class CHEBI:77886 biolink:NamedThing demethylsulochrin(2-) monarch-merged.owl owl:Class CHEBI:77982 biolink:NamedThing tetracenomycin F2(2-) monarch-merged.owl owl:Class CHEBI:77990 biolink:NamedThing tetracenomycin D3(2-) monarch-merged.owl owl:Class CHEBI:79031 biolink:NamedThing dihydromonacolin L carboxylate monarch-merged.owl owl:Class CHEBI:79035 biolink:NamedThing monacolin J carboxylate monarch-merged.owl owl:Class CHEBI:79036 biolink:NamedThing 3alpha-hydroxy-3,5-dihydromonacolin L carboxylate monarch-merged.owl owl:Class CHEBI:79038 biolink:NamedThing mevinolinate monarch-merged.owl owl:Class CHEBI:79044 biolink:NamedThing monacolin L carboxylate monarch-merged.owl owl:Class CHEBI:79172 biolink:NamedThing 2-hydroxy-6-(2-oxidophenyl)-6-oxo-cis,cis-hexa-2,4-dienoate(2-) monarch-merged.owl owl:Class CHEBI:79380 biolink:NamedThing (2E,4Z)-2-hydroxy-7-methyl-6-oxo-2,4-octadienoate monarch-merged.owl owl:Class CHEBI:82773 biolink:NamedThing (R)-3-phosphonatomevalonate(3-) monarch-merged.owl owl:Class CHEBI:82957 biolink:NamedThing 3-hydroxyisovalerate monarch-merged.owl owl:Class CHEBI:83736 biolink:NamedThing 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1,5-dioxo-octahydroinden-4-yl]propanoate monarch-merged.owl owl:Class CHEBI:83941 biolink:NamedThing N-acetyl-D-muramoyl-L-alaninate monarch-merged.owl owl:Class CHEBI:87834 biolink:NamedThing (S)-4-hydroxy-1-pyrroline-2-carboxylate monarch-merged.owl owl:Class CHEBI:90720 biolink:NamedThing 20-oxoleukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:90887 biolink:NamedThing 2-hydroxy-6-oxo-2,4-heptadienoate monarch-merged.owl owl:Class CHEBI:91005 biolink:NamedThing 5-[(E)-caffeoyl]shikimate monarch-merged.owl owl:Class CHEBI:10980 biolink:NamedThing (R)-3-(4-hydroxyphenyl)lactate monarch-merged.owl owl:Class CHEBI:11009 biolink:NamedThing (R)-3-phenyllactate monarch-merged.owl owl:Class CHEBI:71492 biolink:NamedThing (2R)-3-(3,4-dihydroxyphenyl)lactate monarch-merged.owl owl:Class CHEBI:76177 biolink:NamedThing (2R)-2-hydroxy fatty acid anion monarch-merged.owl owl:Class CHEBI:10983 biolink:NamedThing (R)-3-hydroxybutyrate monarch-merged.owl owl:Class CHEBI:37054 biolink:NamedThing 3-hydroxybutyrate A hydroxy fatty acid anion that is the conjugate base of 3-hydroxybutyric acid, obtained by deprotonation of the carboxy group; major species at pH 7.3. monarch-merged.owl DL-3-hydroxybutyrate|3-OH-butyrate|3-hydroxybutanoate|3-OH butyrate|beta-hydroxy-n-butyrate|beta-hydroxybutanoate -1 C4H7O3 InChI=1S/C4H8O3/c1-3(5)2-4(6)7/h3,5H,2H2,1H3,(H,6,7)/p-1 WHBMMWSBFZVSSR-UHFFFAOYSA-M 103.09658 103.04007 CC(O)CC([O-])=O Reaxys:4127635|Beilstein:4127635 chebi_ontology owl:Class CHEBI:11047 biolink:NamedThing (S)-3-hydroxybutyrate monarch-merged.owl owl:Class CHEBI:10986 biolink:NamedThing (R)-4'-phosphonatopantothenate(3-) monarch-merged.owl owl:Class CHEBI:58945 biolink:NamedThing organophosphate oxoanion An organic phosphoric acid derivative in which one or more oxygen atoms of the phosphate group(s) has been deprotonated. monarch-merged.owl organophosphate oxoanions chebi_ontology owl:Class CHEBI:111503 biolink:NamedThing validamine 7-phosphate(1-) monarch-merged.owl owl:Class CHEBI:111504 biolink:NamedThing validoxylamine A 7'-phosphate(1-) monarch-merged.owl owl:Class CHEBI:111522 biolink:NamedThing valienone 7-phosphate(2-) monarch-merged.owl owl:Class CHEBI:111523 biolink:NamedThing validone 7-phosphate(2-) monarch-merged.owl owl:Class CHEBI:128753 biolink:NamedThing (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:128769 biolink:NamedThing isopentenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:131705 biolink:NamedThing 2'-deoxynucleoside 3'-monophosphate(2-) monarch-merged.owl owl:Class CHEBI:131766 biolink:NamedThing (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate(4-) monarch-merged.owl owl:Class CHEBI:131767 biolink:NamedThing D-erythrulose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:131849 biolink:NamedThing D-erythritol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:132211 biolink:NamedThing 4-O-[(2R)-1-glycerylphosphonato]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:132224 biolink:NamedThing 4-O-({poly[(2R)-1-glycerylphosphonato]}-[2R]-1-glycerylphosphonato)-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate polyanion monarch-merged.owl owl:Class CHEBI:132356 biolink:NamedThing 4-O-({poly[(2R)-2-glucosyl-1-glycerylphosphonato]}-[2R]-1-glycerylphosphonato)-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate polyanion monarch-merged.owl owl:Class CHEBI:132525 biolink:NamedThing oligosaccharide-(1->4)-N-acetyl-beta-D-glucosamine-(1->4)-N-acetyl-alpha-D-glucosamine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:133491 biolink:NamedThing alpha-D-Gal-(1->3)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:133673 biolink:NamedThing glyphosate(1-) monarch-merged.owl owl:Class CHEBI:133674 biolink:NamedThing (aminomethyl)phosphonate(1-) monarch-merged.owl owl:Class CHEBI:133867 biolink:NamedThing 4-O-[di(2R)-1-glycerylphosphonato]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate(4-) monarch-merged.owl owl:Class CHEBI:133886 biolink:NamedThing FMNH2(3-) monarch-merged.owl owl:Class CHEBI:133892 biolink:NamedThing 4-O-[1-D-ribitylphosphonato-(2R)-1-glycerylphosphonato]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl ditrans,octacis-undecaprenyl diphosphate(4-) monarch-merged.owl owl:Class CHEBI:133894 biolink:NamedThing 4-O-[poly(1-D-ribitylphosphonato)-1-D-ribitylphosphonato-(2R)-1-glycerylphosphonato]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl ditrans,octacis-undecaprenyl diphosphate polyanion monarch-merged.owl owl:Class CHEBI:133896 biolink:NamedThing 4-O-({poly[1-D-ribitylphosphonato]}-di{[2R]-1-glycerylphosphonato})-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl ditrans,octacis-undecaprenyl diphosphate polyanion monarch-merged.owl owl:Class CHEBI:133927 biolink:NamedThing glycolaldehyde phosphate(2-) monarch-merged.owl owl:Class CHEBI:134068 biolink:NamedThing (1->4)-6-phospho-alpha-D-glucan polyanion monarch-merged.owl owl:Class CHEBI:134197 biolink:NamedThing 3',5'-cyclic IMP(1-) monarch-merged.owl owl:Class CHEBI:134283 biolink:NamedThing keto-D-tagatose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:134284 biolink:NamedThing keto-L-tagatose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:136397 biolink:NamedThing (2xi)-3-deoxy-7-O-phosphonato-beta-D-threo-hept-6-ulopyranosonate monarch-merged.owl owl:Class CHEBI:136749 biolink:NamedThing 5-phospho-D-xylonate (3-) monarch-merged.owl owl:Class CHEBI:136751 biolink:NamedThing D-xylono-1,4-lactone-5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:136753 biolink:NamedThing L-arabino-1,4-lactone-5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:136756 biolink:NamedThing 5-phospho-L-arabinonate(3-) monarch-merged.owl owl:Class CHEBI:136833 biolink:NamedThing glycolaldehyde triphosphate(4-) monarch-merged.owl owl:Class CHEBI:136960 biolink:NamedThing ditrans,polycis-polyprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:137168 biolink:NamedThing alpha-D-mannosyl-(1->3)-N-acetyl-alpha-D-glucosaminyl-1-diphospho-ditrans,polycis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:137169 biolink:NamedThing alpha-D-mannosyl-(1->3)-alpha-D-mannosyl-(1->3)-alpha-D-mannosyl-(1->3)-N-acetyl-alpha-D-glucosaminyl-1-diphospho-ditrans,polycis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:137180 biolink:NamedThing 2,3-diacyl-alpha-D-glucosaminyl 1-phosphate monarch-merged.owl owl:Class CHEBI:137353 biolink:NamedThing pyridinium-3,5-biscarboxylate mononucleotide(3-) monarch-merged.owl owl:Class CHEBI:137355 biolink:NamedThing 5-carboxy-1-(5-O-phosphono-beta-D-ribofuranosyl)pyridinium-3-carbonyl adenylate(3-) monarch-merged.owl owl:Class CHEBI:137358 biolink:NamedThing 1-(5-O-phosphono-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridinium-3-carbonyl adenylate(3-) monarch-merged.owl owl:Class CHEBI:137372 biolink:NamedThing pyridinium-3,5-bisthiocarboxylate mononucleotide(3-) monarch-merged.owl owl:Class CHEBI:137373 biolink:NamedThing Ni(II)-pyridinium-3,5-bisthiocarboxylate mononucleotide(1-) monarch-merged.owl owl:Class CHEBI:137409 biolink:NamedThing L-sorbose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:137594 biolink:NamedThing N-acetyl-alpha-D-muramate 1-phosphate(3-) monarch-merged.owl owl:Class CHEBI:137981 biolink:NamedThing 5-amino-1-(5-phosphonato-beta-D-ribosyl)imidazol-3-ium monarch-merged.owl owl:Class CHEBI:138011 biolink:NamedThing 6-(alpha-D-glucose-1-phospho)-alpha-D-mannoside(1-) monarch-merged.owl owl:Class CHEBI:138150 biolink:NamedThing D-tagatopyranose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:138171 biolink:NamedThing pApA(3-) monarch-merged.owl owl:Class CHEBI:138223 biolink:NamedThing ent-copal-8-ol diphosphate(3-) monarch-merged.owl owl:Class CHEBI:138232 biolink:NamedThing peregrinol diphosphate(3-) monarch-merged.owl owl:Class CHEBI:138268 biolink:NamedThing D-xylulose 1,5-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:138310 biolink:NamedThing (-)-kolavenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:138311 biolink:NamedThing (+)-kolavenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:138330 biolink:NamedThing pyridinium-3-carboxylate-5-thiocarboxylate mononucleotide(3-) monarch-merged.owl owl:Class CHEBI:138439 biolink:NamedThing [alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)]n-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-GlcNAc-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:138518 biolink:NamedThing dialkyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:138603 biolink:NamedThing (4-alkanoyl-5-oxo-2,5-dihydrofuran-3-yl)methyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:138621 biolink:NamedThing [(3S,4R)-4-alkanoyl-5-oxooxolan-3-yl]methyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:138733 biolink:NamedThing alpha-D-galactosyl ditrans,octacis-undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:139032 biolink:NamedThing nerylneryl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:139070 biolink:NamedThing norbaeocystin(1-) monarch-merged.owl owl:Class CHEBI:139071 biolink:NamedThing baeocystin(1-) monarch-merged.owl owl:Class CHEBI:139072 biolink:NamedThing psilocybin(1-) monarch-merged.owl owl:Class CHEBI:139145 biolink:NamedThing 4-O-({poly[2-N-acetyl-alpha-D-glucosaminyl-1-D-ribitylphosphonato]}-di{[2R]-1-glycerylphosphonato})-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl ditrans,octacis-undecaprenyl diphosphate polyanion monarch-merged.owl owl:Class CHEBI:139146 biolink:NamedThing 4-O-({poly[2-N-acetyl-beta-D-glucosaminyl-1-D-ribitylphosphonato]}-di{[2R]-1-glycerylphosphonato})-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl ditrans,octacis-undecaprenyl diphosphate polyanion monarch-merged.owl owl:Class CHEBI:139148 biolink:NamedThing mannose-(1D-myo-inositol 1-phosphate)2(3-) monarch-merged.owl owl:Class CHEBI:139149 biolink:NamedThing 4-O-[poly(2-beta-D-glucosyl-1-D-ribitylphosphonato)-1-D-ribitylphosphonato-(2R)-1-glycerylphosphonato]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl ditrans,octacis-undecaprenyl diphosphate polyanion monarch-merged.owl owl:Class CHEBI:139151 biolink:NamedThing ADP-5-ethyl-4-methylthiazole-2-carboxylate(3-) monarch-merged.owl owl:Class CHEBI:139561 biolink:NamedThing archaeal dolichyl alpha-D-glucosyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:139562 biolink:NamedThing archaeal dolichyl beta-D-glucuronosyl-(1->4)-alpha-D-glucosyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:139569 biolink:NamedThing 8-amino-8-demethylriboflavin 5'-phosphate(3-) monarch-merged.owl owl:Class CHEBI:139570 biolink:NamedThing 8-formyl-8-demethylriboflavin 5'-phosphate(3-) monarch-merged.owl owl:Class CHEBI:139571 biolink:NamedThing 8-carboxy-8-demethylriboflavin 5'-phosphate(4-) monarch-merged.owl owl:Class CHEBI:140159 biolink:NamedThing D-hexose phosphate(2-) monarch-merged.owl owl:Class CHEBI:140179 biolink:NamedThing 3'-L-prolyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:140195 biolink:NamedThing 21-phosphorifampicin(2-) monarch-merged.owl owl:Class CHEBI:140294 biolink:NamedThing 5'-triphosphoadenylyl-(2'->5')-adenosine(5-) monarch-merged.owl owl:Class CHEBI:140311 biolink:NamedThing FMNH(.)(2-) monarch-merged.owl owl:Class CHEBI:140358 biolink:NamedThing monosaccharide 1-phosphate(2-) An organophosphate oxoanion obtained by deprotonation of the phosphate OH groups of any monosaccharide 1-phosphate.This compound class represents generic and unspecified sugar 1-phosphates. monarch-merged.owl sugar 1-monophosphate(2-)|a monosaccharide 1-phosphate|monosaccharide 1-monophosphate(2-) -2 O4PR 94.971 94.95342 P(=O)([O-])([O-])O* MetaCyc:Sugar-1-Phosphate chebi_ontology owl:Class CHEBI:140561 biolink:NamedThing (1->4)-3,6-bis(phospho)-alpha-D-glucan polyanion monarch-merged.owl owl:Class CHEBI:141131 biolink:NamedThing acyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:142345 biolink:NamedThing ditrans,polycis-dodecaprenyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:143093 biolink:NamedThing 2'-3'-cGAMP(2-) monarch-merged.owl owl:Class CHEBI:143098 biolink:NamedThing Gp[2'-5']Ap[3'](3-) monarch-merged.owl owl:Class CHEBI:145497 biolink:NamedThing N-acylethanolamine phosphate(2-) monarch-merged.owl owl:Class CHEBI:162247 biolink:NamedThing 2-cis,6-trans-farnesyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:175763 biolink:NamedThing 2-trans,6-trans-farnesyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:176343 biolink:NamedThing 2,3,2',3'-tetrakis[(3R)-3-hydroxyacyl]-alpha-D-glucosaminyl-1,6-beta-D-glucosamine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:176894 biolink:NamedThing vitamin B6 phosphate anion monarch-merged.owl vitamin B-6 phosphate anions|vitamin B6 phosphate anions|vitamin B-6 phosphate anion owl:Class CHEBI:18277 biolink:NamedThing N-(5-phosphonato-beta-D-ribosyl)anthranilate monarch-merged.owl owl:Class CHEBI:231935 biolink:NamedThing glycerol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:24367 biolink:NamedThing glycinamide ribonucleotide(2-) monarch-merged.owl owl:Class CHEBI:295975 biolink:NamedThing choline phosphate(1-) The organophosphate oxoanion formed from choline by removal of two protons from the phosphate group. Major species at pH 7.3. monarch-merged.owl 2-(trimethylazaniumyl)ethyl phosphate|phosphocholine|2-(trimethylammonio)ethyl phosphate -1 C5H13NO4P InChI=1S/C5H14NO4P/c1-6(2,3)4-5-10-11(7,8)9/h4-5H2,1-3H3,(H-,7,8,9)/p-1 YHHSONZFOIEMCP-UHFFFAOYSA-M 182.13480 182.05877 C[N+](C)(C)CCOP([O-])([O-])=O PMID:9357523 chebi_ontology owl:Class CHEBI:370252 biolink:NamedThing xylitol 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:37575 biolink:NamedThing thiamine(1+) monophosphate(2-) monarch-merged.owl owl:Class CHEBI:49100 biolink:NamedThing adenosylcobalamin 5'-phosphate monarch-merged.owl owl:Class CHEBI:49299 biolink:NamedThing D-fructofuranose 1,6-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:57258 biolink:NamedThing 2-amino-5-formylamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57259 biolink:NamedThing 2-deoxy-alpha-D-ribose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57265 biolink:NamedThing 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:57267 biolink:NamedThing beta-D-fructofuranose 2-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57268 biolink:NamedThing beta-L-fucose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57269 biolink:NamedThing N,N'-diacetylchitobiosyldiphosphonatodolichol(2-) monarch-merged.owl owl:Class CHEBI:57279 biolink:NamedThing 3-ammonio-2-oxopropyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:57287 biolink:NamedThing coenzyme A(4-) Tetraanion of coenzyme A. monarch-merged.owl 3'-phosphonatoadenosine 5'-{3-[(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)butyl] diphosphate}|CoA -4 C21H32N7O16P3S InChI=1S/C21H36N7O16P3S/c1-21(2,16(31)19(32)24-4-3-12(29)23-5-6-48)8-41-47(38,39)44-46(36,37)40-7-11-15(43-45(33,34)35)14(30)20(42-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,30-31,48H,3-8H2,1-2H3,(H,23,29)(H,24,32)(H,36,37)(H,38,39)(H2,22,25,26)(H2,33,34,35)/p-4/t11-,14-,15-,16+,20-/m1/s1 RGJOEKWQDUBAIZ-IBOSZNHHSA-J 763.50200 763.08610 CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCS Beilstein:11604429 chebi_ontology owl:Class CHEBI:57290 biolink:NamedThing hydroxyacetone phosphate(2-) monarch-merged.owl owl:Class CHEBI:57293 biolink:NamedThing (+)-bornyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:57310 biolink:NamedThing presqualene diphosphate(3-) monarch-merged.owl owl:Class CHEBI:57328 biolink:NamedThing 3'-dephospho-CoA(2-) monarch-merged.owl owl:Class CHEBI:57417 biolink:NamedThing 2,3-dihydroxybenzoyl 5'-adenylate(1-) monarch-merged.owl owl:Class CHEBI:57458 biolink:NamedThing (S)-NADHX(1-) monarch-merged.owl owl:Class CHEBI:57483 biolink:NamedThing sedoheptulose 7-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57497 biolink:NamedThing dolichyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:57502 biolink:NamedThing nicotinate D-ribonucleotide(2-) monarch-merged.owl owl:Class CHEBI:57508 biolink:NamedThing D-erythritol 4-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57513 biolink:NamedThing N-acetyl-D-glucosamine 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57521 biolink:NamedThing beta-L-arabinose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57523 biolink:NamedThing dolichyl D-mannosyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:57525 biolink:NamedThing dolichyl beta-D-glucosyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:57526 biolink:NamedThing N(6)-(dimethylallyl)adenosine 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57533 biolink:NamedThing geranylgeranyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:57535 biolink:NamedThing 4-phosphonato-L-aspartic acid(2-) monarch-merged.owl owl:Class CHEBI:57537 biolink:NamedThing N-acylneuraminate 9-phosphate(3-) monarch-merged.owl owl:Class CHEBI:57538 biolink:NamedThing orotidine 5'-phosphate(3-) monarch-merged.owl owl:Class CHEBI:57540 biolink:NamedThing NAD(1-) monarch-merged.owl owl:Class CHEBI:57547 biolink:NamedThing CDP-N-methylethanolamine(1-) monarch-merged.owl owl:Class CHEBI:57551 biolink:NamedThing S-methyl 3-O-phosphonato-1-thio-D-glycerate(2-) monarch-merged.owl owl:Class CHEBI:57553 biolink:NamedThing P(1),P(4)-bis(5'-guanosyl) tetraphosphate(4-) monarch-merged.owl owl:Class CHEBI:57557 biolink:NamedThing (R)-5-diphosphonatomevalonate(4-) monarch-merged.owl owl:Class CHEBI:57559 biolink:NamedThing alpha-D-xylose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57567 biolink:NamedThing N(6)-(1,2-dicarboxylatoethyl)-AMP(4-) monarch-merged.owl owl:Class CHEBI:57569 biolink:NamedThing 2-dehydro-3-deoxy-6-phosphonato-D-gluconate(3-) monarch-merged.owl owl:Class CHEBI:57570 biolink:NamedThing dolichyl diphosphooligosaccharide(2-) monarch-merged.owl owl:Class CHEBI:57577 biolink:NamedThing poly(glycerol phosphate) anion macromolecule monarch-merged.owl owl:Class CHEBI:57579 biolink:NamedThing D-fructose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57584 biolink:NamedThing aldehydo-D-glucose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57590 biolink:NamedThing O-phosphonato-L-homoserine(2-) monarch-merged.owl owl:Class CHEBI:57597 biolink:NamedThing sn-glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57599 biolink:NamedThing N-acyl-D-glucosamine 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57600 biolink:NamedThing GTP(3-) monarch-merged.owl owl:Class CHEBI:57602 biolink:NamedThing (2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:57604 biolink:NamedThing 3-phosphonato-D-glyceroyl phosphate(4-) monarch-merged.owl owl:Class CHEBI:57607 biolink:NamedThing oleandomycin 2'-O-phosphate(1-) monarch-merged.owl owl:Class CHEBI:57617 biolink:NamedThing alpha-D-galactosyl undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:57618 biolink:NamedThing FMNH2(2-) monarch-merged.owl owl:Class CHEBI:57620 biolink:NamedThing poly(ribitol phosphate) polyanion monarch-merged.owl owl:Class CHEBI:57623 biolink:NamedThing prenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:57629 biolink:NamedThing D-glucopyranose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57634 biolink:NamedThing beta-D-fructofuranose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57642 biolink:NamedThing glycerone phosphate(2-) monarch-merged.owl owl:Class CHEBI:57651 biolink:NamedThing 2-deoxy-D-ribose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57654 biolink:NamedThing undecaprenyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:57665 biolink:NamedThing neryl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:57666 biolink:NamedThing N-acyl-D-mannosamine 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57677 biolink:NamedThing sn-3-O-(geranylgeranyl)glycerol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57683 biolink:NamedThing dolichyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:57684 biolink:NamedThing beta-D-glucose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57692 biolink:NamedThing FAD(3-) monarch-merged.owl owl:Class CHEBI:57693 biolink:NamedThing aldehydo-D-arabinose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57695 biolink:NamedThing D-ribitol 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57701 biolink:NamedThing 5-O-(1-carboxylatovinyl)-3-phosphonatoshikimate monarch-merged.owl owl:Class CHEBI:57707 biolink:NamedThing 2,3-bis-O-(geranylgeranyl)glycerol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57709 biolink:NamedThing 2-amino-3-oxo-4-(phosphonatooxy)butanoate monarch-merged.owl owl:Class CHEBI:57720 biolink:NamedThing alpha-D-ribose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57723 biolink:NamedThing sucrose 6(F)-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57734 biolink:NamedThing alpha-D-hexose 1-phosphate(2-) The dianion of any alpha-D-hexose 1-phosphate arising from deprotonation of the phosphate OH groups; major species at pH 7.3. monarch-merged.owl alpha-D-hexose 1-phosphate|alpha-D-hexose 1-phosphate dianion -2 C6H11O9P InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/p-2/t2-,3?,4?,5?,6-/m1/s1 HXXFSFRBOHSIMQ-ZOSDKUOISA-L 258.120 258.01517 O1[C@@H](C(C(C([C@H]1OP([O-])(=O)[O-])O)O)O)CO chebi_ontology owl:Class CHEBI:57737 biolink:NamedThing D-xylulose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57746 biolink:NamedThing 3',5'-cyclic GMP(1-) monarch-merged.owl owl:Class CHEBI:57764 biolink:NamedThing 1-deoxy-D-altro-heptulose 7-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57766 biolink:NamedThing 3-(imidazol-4-yl)-2-oxopropyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:57776 biolink:NamedThing N-acetyl-alpha-D-glucosamine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57781 biolink:NamedThing N-methylethanolaminium phosphate(1-) monarch-merged.owl owl:Class CHEBI:57792 biolink:NamedThing 1-deoxy-D-xylulose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57818 biolink:NamedThing 5,10-methylenetetrahydromethanopterin(3-) monarch-merged.owl owl:Class CHEBI:57828 biolink:NamedThing D-hamamelose 2(1)-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57829 biolink:NamedThing L-xylulose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57831 biolink:NamedThing glycerol 1,2-cyclic phosphate(1-) monarch-merged.owl owl:Class CHEBI:57841 biolink:NamedThing 4-amino-2-methyl-5-diphosphonatooxymethylpyrimidine(3-) monarch-merged.owl owl:Class CHEBI:57846 biolink:NamedThing L-fuculose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57867 biolink:NamedThing nucleoside 5'-phosphate dianion The conjugate base of a nucleoside 5'-phosphate. monarch-merged.owl nucleoside 5'-phosphate dianions|a nucleoside 5'-phosphate -2 C5H7O6PR2 194.07920 193.99802 O[C@H]1[C@@H]([*])[C@H]([*])O[C@@H]1COP([O-])([O-])=O chebi_ontology owl:Class CHEBI:57870 biolink:NamedThing D-ribulose 1,5-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:57876 biolink:NamedThing CDP-ethanolamine(1-) monarch-merged.owl owl:Class CHEBI:57882 biolink:NamedThing erythro-5-phosphonatoooxy-L-lysinium(1-) monarch-merged.owl owl:Class CHEBI:57886 biolink:NamedThing 2'-deoxy-5-methyl-5'-cytidylate(2-) monarch-merged.owl owl:Class CHEBI:57897 biolink:NamedThing 1-phosphonato-alpha-D-glucuronate(3-) monarch-merged.owl owl:Class CHEBI:57903 biolink:NamedThing [1-(5-phosphonatoribosyl)imidazol-4-yl]acetate(3-) monarch-merged.owl owl:Class CHEBI:57907 biolink:NamedThing all-trans-pentaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:57918 biolink:NamedThing alpha-ribazole 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57930 biolink:NamedThing nucleoside 5'-diphosphate(3-) Trianion of nucleoside diiphosphate arising from deprotonation of all three free OH groups of the diphosphate; major species at pH 7.3. monarch-merged.owl ribonucleoside diphosphate(3-)|NDP trianion|nucleoside diphosphate trianion|ribonucleoside diphosphate trianion|a ribonucleoside 5'-diphosphate|NDP(3-) -3 C5H8O10P2R 290.059 289.95927 [C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP([O-])(=O)[O-])(=O)[O-] chebi_ontology owl:Class CHEBI:57936 biolink:NamedThing N-acetyl-L-gamma-glutamyl phosphate(3-) monarch-merged.owl owl:Class CHEBI:57955 biolink:NamedThing 6-O-phosphonato-D-glucono-1,5-lactone(2-) monarch-merged.owl owl:Class CHEBI:57957 biolink:NamedThing lipid X(2-) monarch-merged.owl owl:Class CHEBI:57962 biolink:NamedThing 5-hydroxymethyldeoxycytidylate(2-) monarch-merged.owl owl:Class CHEBI:57980 biolink:NamedThing L-histidinol phosphate(1-) monarch-merged.owl owl:Class CHEBI:58002 biolink:NamedThing L-erythrulose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58003 biolink:NamedThing 3',5'-cyclic CMP(1-) monarch-merged.owl owl:Class CHEBI:58011 biolink:NamedThing (1R,2R,3R)-prephytoene diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58017 biolink:NamedThing 5-O-phosphonato-alpha-D-ribofuranosyl diphosphate(5-) Pentaanion of 5-O-phosphono-alpha-D-ribofuranosyl diphosphate arising from deprotonation of the phosphate and diphosphate OH groups; major species at pH 7.3. monarch-merged.owl 5-O-phosphonato-alpha-D-ribofuranosyl diphosphate pentaanion|5-phosphonatoribosyl 1-pyrophosphate|5-phosphoribosyl 1-pyrophosphate|5-phospho-alpha-D-ribose 1-diphosphate -5 C5H8O14P3 InChI=1S/C5H13O14P3/c6-3-2(1-16-20(8,9)10)17-5(4(3)7)18-22(14,15)19-21(11,12)13/h2-7H,1H2,(H,14,15)(H2,8,9,10)(H2,11,12,13)/p-5/t2-,3-,4-,5-/m1/s1 PQGCEDQWHSBAJP-TXICZTDVSA-I 385.02990 384.91543 O[C@H]1[C@@H](O)[C@H](O[C@@H]1COP([O-])([O-])=O)OP([O-])(=O)OP([O-])([O-])=O MetaCyc:PRPP chebi_ontology owl:Class CHEBI:58018 biolink:NamedThing N(5)-formyl-5,6,7,8-tetrahydromethanopterin(3-) monarch-merged.owl owl:Class CHEBI:58027 biolink:NamedThing glyceraldehyde 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58033 biolink:NamedThing 2-phosphonatoglycolate(3-) monarch-merged.owl owl:Class CHEBI:58043 biolink:NamedThing nucleoside 5'-monophosphate(2-) The dianion of a nucleoside monophosphate: major species at pH 7.3. monarch-merged.owl a ribonucleoside 5'-phosphate|5'-ribonucleotide(2-)|nucleoside monophosphate anion|nucleoside monophosphate dianions|nucleoside monophosphate dianion|nucleoside monophosphate anions -2 C5H8O7PR 211.08660 211.00076 O[C@@H]1[C@H](O)[C@@H](COP([O-])([O-])=O)O[C@H]1[*] CHEBI:85513 chebi_ontology owl:Class CHEBI:58050 biolink:NamedThing dolichyl N-acetyl-alpha-D-glucosaminyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:58057 biolink:NamedThing geranyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58079 biolink:NamedThing butanoyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58083 biolink:NamedThing glycerol 2-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58089 biolink:NamedThing 5-phosphonato-D-ribosylaminium(1-) monarch-merged.owl owl:Class CHEBI:58096 biolink:NamedThing dolichyl D-xylosyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:58103 biolink:NamedThing 5,6,7,8-tetrahydromethanopterin(3-) monarch-merged.owl owl:Class CHEBI:58116 biolink:NamedThing 5-methyl-5,6,7,8-tetrahydromethanopterin(3-) monarch-merged.owl owl:Class CHEBI:58121 biolink:NamedThing D-ribulose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58131 biolink:NamedThing 2-methylpropanoyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58141 biolink:NamedThing P(1),P(4)-bis(5'-adenosyl) tetraphosphate(4-) monarch-merged.owl owl:Class CHEBI:58165 biolink:NamedThing 3',5'-cyclic AMP(1-) An organophosphate oxoanion that is the conjugate base of 3',5'-cyclic AMP arising from deprotonation of the free phosphate OH group; major species at pH 7.3. monarch-merged.owl adenosine 3',5'-cyclic monophosphate(1-)|adenosine 3',5'-cyclic monophosphate|3',5'-cyclic AMP|adenosine 3',5'-phosphate|3',5'-cyclic AMP anion|adenosine 3',5'-cyclic monophosphate anion -1 C10H11N5O6P InChI=1S/C10H12N5O6P/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7-4(20-10)1-19-22(17,18)21-7/h2-4,6-7,10,16H,1H2,(H,17,18)(H2,11,12,13)/p-1/t4-,6-,7-,10-/m1/s1 IVOMOUWHDPKRLL-KQYNXXCUSA-M 328.19800 328.04524 Nc1ncnc2n(cnc12)[C@@H]1O[C@@H]2COP([O-])(=O)O[C@H]2[C@H]1O Reaxys:3720459|PMID:7870041|PMID:7870042 chebi_ontology owl:Class CHEBI:58169 biolink:NamedThing 2-(alpha-D-galactosyl)-sn-glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58185 biolink:NamedThing 2-carboxylato-D-arabinitol 1-phosphate(3-) monarch-merged.owl owl:Class CHEBI:58186 biolink:NamedThing 1-phosphonato-alpha-D-galacturonate(3-) monarch-merged.owl owl:Class CHEBI:58190 biolink:NamedThing O-phosphonatoethanaminium(1-) An organophosphate oxoanion that is the conjugate base of O-phosphoethanolamine arising from deprotonation of the phosphate OH groups and protonation of the amino group; major species at pH 7.3. monarch-merged.owl O-phosphonatoethanaminium|2-ammonioethyl phosphate|phosphoethanolamine|2-azaniumylethyl phosphate -1 C2H7NO4P InChI=1S/C2H8NO4P/c3-1-2-7-8(4,5)6/h1-3H2,(H2,4,5,6)/p-1 SUHOOTKUPISOBE-UHFFFAOYSA-M 140.05500 140.01182 [NH3+]CCOP([O-])([O-])=O chebi_ontology owl:Class CHEBI:58210 biolink:NamedThing FMN(3-) monarch-merged.owl owl:Class CHEBI:58211 biolink:NamedThing dolichyl beta-D-mannosyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:58215 biolink:NamedThing guanosine 3',5'-bis(diphosphate)(6-) monarch-merged.owl owl:Class CHEBI:58220 biolink:NamedThing N-adenylyl-L-phenylalanate(2-) monarch-merged.owl owl:Class CHEBI:58226 biolink:NamedThing L-ribulose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58228 biolink:NamedThing carbamoyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58232 biolink:NamedThing D-glucose 1,6-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:58243 biolink:NamedThing 5'-adenylyl sulfate(2-) monarch-merged.owl owl:Class CHEBI:58247 biolink:NamedThing beta-D-glucose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58248 biolink:NamedThing 2,3-bisphosphonato-D-glycerate(5-) monarch-merged.owl owl:Class CHEBI:58255 biolink:NamedThing aldehydo-D-galactose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58259 biolink:NamedThing dihydrostreptomycin 3'alpha,6-bisphosphate(1-) monarch-merged.owl owl:Class CHEBI:58262 biolink:NamedThing 2-C-methyl-D-erythritol 4-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58273 biolink:NamedThing aldehydo-D-ribose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58274 biolink:NamedThing L-gamma-glutamyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58278 biolink:NamedThing D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58285 biolink:NamedThing 7-methylguanosine 5'-phosphate(1-) monarch-merged.owl owl:Class CHEBI:58296 biolink:NamedThing 4-methyl-5-(2-phosphonatooxyethyl)thiazole(2-) monarch-merged.owl owl:Class CHEBI:58298 biolink:NamedThing 6-phosphonato-2-dehydro-3-deoxy-D-galactate(3-) monarch-merged.owl owl:Class CHEBI:58307 biolink:NamedThing FADH2(2-) monarch-merged.owl owl:Class CHEBI:58311 biolink:NamedThing (2R)-CDP-glycerol(2-) monarch-merged.owl owl:Class CHEBI:58312 biolink:NamedThing 6-phosphonato-beta-D-glucosyl-(1->4)-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:58313 biolink:NamedThing L-rhamnulose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58328 biolink:NamedThing D-allose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58330 biolink:NamedThing 1-alpha-D-galactosyl-sn-glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58331 biolink:NamedThing farnesyl triphosphate(3-) monarch-merged.owl owl:Class CHEBI:58335 biolink:NamedThing sedoheptulose 1,7-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:58336 biolink:NamedThing alpha-D-galactose 1-phosphate(2-) An organophosphate oxoanion arising from deprotonation of the phosphate OH groups of alpha-D-galactose 1-phosphate; major species at pH 7.3. monarch-merged.owl 1-O-phosphonato-alpha-D-galactopyranose|alpha-D-galactose 1-phosphate|alpha-D-galactose 1-phosphate dianion|alpha-D-galactopyranose 1-phosphate -2 C6H11O9P InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/p-2/t2-,3+,4+,5-,6-/m1/s1 HXXFSFRBOHSIMQ-FPRJBGLDSA-L 258.11990 258.01407 OC[C@H]1O[C@H](OP([O-])([O-])=O)[C@H](O)[C@@H](O)[C@H]1O MetaCyc:GALACTOSE-1P|Reaxys:3911527 chebi_ontology owl:Class CHEBI:58337 biolink:NamedThing 5,10-(methanylylidene)tetrahydromethanopterin(2-) monarch-merged.owl owl:Class CHEBI:58339 biolink:NamedThing 3'-phosphonato-5'-adenylyl sulfate(4-) monarch-merged.owl owl:Class CHEBI:58343 biolink:NamedThing adenosine 3',5'-bismonophosphate(4-) monarch-merged.owl owl:Class CHEBI:58345 biolink:NamedThing D-ribose 1,5-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:58349 biolink:NamedThing NADP(3-) An organophosphate oxoanion arising from deprotonation of the phosphate and diphosphate OH groups of NADP(+); major species at pH 7.3. monarch-merged.owl 2'-O-phosphonatoadenosine 5'-{3-[1-(3-carbamoylpyridinio)-1,4-anhydro-D-ribitol-5-yl] diphosphate}|NADP trianion|NADP(+) -3 C21H25N7O17P3 InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/p-3/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1 XJLXINKUBYWONI-NNYOXOHSSA-K 740.38120 740.05362 NC(=O)c1ccc[n+](c1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](OP([O-])([O-])=O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@H]1O Reaxys:4122171 chebi_ontology owl:Class CHEBI:58352 biolink:NamedThing 2-hydroxypropyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58354 biolink:NamedThing 4-amino-2-methyl-5-phosphonatooxymethylpyrimidine(2-) monarch-merged.owl owl:Class CHEBI:58356 biolink:NamedThing N-phosphonato-L-lombricine(2-) monarch-merged.owl owl:Class CHEBI:58369 biolink:NamedThing dTDP(3-) monarch-merged.owl owl:Class CHEBI:58380 biolink:NamedThing pseudouridine 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58381 biolink:NamedThing 3-ADP-2-phosphoglycerate(5-) monarch-merged.owl owl:Class CHEBI:58392 biolink:NamedThing alpha-D-glucose 1,6-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:58394 biolink:NamedThing 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate monarch-merged.owl owl:Class CHEBI:58404 biolink:NamedThing (E)-3,7,11,15-tetramethylhexadec-2-en-1-yl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58405 biolink:NamedThing ditrans,polycis-undecaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58409 biolink:NamedThing alpha-D-mannose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58411 biolink:NamedThing CoM-S-S-CoB(4-) monarch-merged.owl owl:Class CHEBI:58418 biolink:NamedThing ditrans,polycis-decaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58421 biolink:NamedThing 5-amino-6-(5-phosphoribitylamino)uracil(2-) monarch-merged.owl owl:Class CHEBI:58426 biolink:NamedThing N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide(2-) monarch-merged.owl owl:Class CHEBI:58427 biolink:NamedThing N-acetyl-D-glucosaminyldiphosphodolichol(2-) monarch-merged.owl owl:Class CHEBI:58429 biolink:NamedThing alpha,alpha-trehalose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58435 biolink:NamedThing 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide(4-) monarch-merged.owl owl:Class CHEBI:58437 biolink:NamedThing deamido-NAD(2-) monarch-merged.owl owl:Class CHEBI:58443 biolink:NamedThing SAICAR(4-) monarch-merged.owl owl:Class CHEBI:58450 biolink:NamedThing adenosine 5'-tetraphosphate(5-) monarch-merged.owl owl:Class CHEBI:58451 biolink:NamedThing pyridoxamine 5'-phosphate(1-) An organophosphate oxoanion that is the conjugate base of pyridoxamine 5'-phosphate. monarch-merged.owl [4-(ammoniomethyl)-5-hydroxy-6-methylpyridin-3-yl]methyl phosphate|pyridoxamine 5'-phosphate anion|pyridoxamine 5'-phosphate -1 C8H12N2O5P InChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)/p-1 ZMJGSOSNSPKHNH-UHFFFAOYSA-M 247.16500 247.04893 Cc1ncc(COP([O-])([O-])=O)c(C[NH3+])c1O chebi_ontology owl:Class CHEBI:58452 biolink:NamedThing 4-(phosphonatooxy)-L-threonine(2-) monarch-merged.owl owl:Class CHEBI:58453 biolink:NamedThing 5-amino-6-(5-phospho-D-ribosylamino)uracil(2-) monarch-merged.owl owl:Class CHEBI:58457 biolink:NamedThing N(1)-(5-phospho-D-ribosyl)glycinamide(1-) monarch-merged.owl owl:Class CHEBI:58462 biolink:NamedThing 7,8-dihydroneopterin 3'-triphosphate(4-) monarch-merged.owl owl:Class CHEBI:58464 biolink:NamedThing nucleoside 3',5'-cyclic phosphate anion The conjugate base of a nucleoside 3',5'-cyclic phosphate. monarch-merged.owl nucleoside 3',5'-cyclic phosphate anions|a nucleoside 3',5'-cyclic phosphate -1 C5H6O5PR2 177.07190 176.99528 [O-]P1(=O)OC[C@H]2O[C@@H]([*])[C@H]([*])[C@@H]2O1 chebi_ontology owl:Class CHEBI:58466 biolink:NamedThing 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-alpha-D-glucosaminyl-1,6-beta-D-glucosamine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58467 biolink:NamedThing 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide(2-) monarch-merged.owl owl:Class CHEBI:58472 biolink:NamedThing beta-D-mannosyldiacetylchitobiosyldiphosphodolichol(2-) monarch-merged.owl owl:Class CHEBI:58475 biolink:NamedThing 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide(2-) monarch-merged.owl owl:Class CHEBI:58477 biolink:NamedThing N(omega)-phosphonato-L-arginine monarch-merged.owl owl:Class CHEBI:58478 biolink:NamedThing 2-formamido-N(1)-(5-O-phosphonato-D-ribosyl)acetamidine monarch-merged.owl owl:Class CHEBI:58483 biolink:NamedThing 2-C-methyl-D-erythritol 2,4-cyclic diphosphate(2-) monarch-merged.owl owl:Class CHEBI:58502 biolink:NamedThing adenosylcobinamide phosphate(1-) monarch-merged.owl owl:Class CHEBI:58516 biolink:NamedThing alpha-D-glucosamine 1-phosphate(1-) monarch-merged.owl owl:Class CHEBI:58525 biolink:NamedThing 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide(4-) monarch-merged.owl owl:Class CHEBI:58529 biolink:NamedThing P(1),P(3)-bis(5'-adenosyl) triphosphate(4-) monarch-merged.owl owl:Class CHEBI:58533 biolink:NamedThing S-methyl-5-thio-alpha-D-ribose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58534 biolink:NamedThing 6-phospho-beta-D-galactoside(2-) monarch-merged.owl owl:Class CHEBI:58538 biolink:NamedThing (R)-3-hydroxy-2-oxo-4-(phosphonatoooxy)butanoate monarch-merged.owl owl:Class CHEBI:58541 biolink:NamedThing 5-methyldeoxycytidine 5'-diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58542 biolink:NamedThing D-arabino-hex-3-ulose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58548 biolink:NamedThing S-methyl-5-thio-D-ribulose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58553 biolink:NamedThing 5beta,9alpha,10alpha-labda-8(20),13-dien-15-yl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58555 biolink:NamedThing S-acetylphosphopantotheine(2-) monarch-merged.owl owl:Class CHEBI:58557 biolink:NamedThing N-acetyl-D-mannosamine 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58560 biolink:NamedThing L-alpha-glutamyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58563 biolink:NamedThing (R)-1-ammoniopropan-2-yl phosphate(1-) monarch-merged.owl owl:Class CHEBI:58564 biolink:NamedThing 5-amino-1-(5-phosphonato-D-ribosyl)imidazole-4-carboxylate monarch-merged.owl owl:Class CHEBI:58566 biolink:NamedThing D-arabinitol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58576 biolink:NamedThing 2-deoxy-D-ribofuranose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58579 biolink:NamedThing beta-D-fructofuranose 2,6-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:58592 biolink:NamedThing 5-amino-1-(5-phosphonato-D-ribosyl)imidazol-3-ium monarch-merged.owl owl:Class CHEBI:58596 biolink:NamedThing coenzyme B(3-) monarch-merged.owl owl:Class CHEBI:58599 biolink:NamedThing N'-phosphonatoguanidinoethyl methyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58601 biolink:NamedThing alpha-D-glucose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58602 biolink:NamedThing D-mannosyl undecaprenyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:58613 biolink:NamedThing 1-(2-carboxylatophenylamino)-1-deoxy-D-ribulose 5-phosphate(3-) monarch-merged.owl owl:Class CHEBI:58614 biolink:NamedThing 2,5-diamino-4-hydroxy-6-(5-phosphonatoribosylamino)pyrimidine(3-) monarch-merged.owl owl:Class CHEBI:58622 biolink:NamedThing 5alpha,9beta,10alpha-labda-8(20),13-dien-15-yl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58635 biolink:NamedThing 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58641 biolink:NamedThing N,N-dimethylethanolamine phosphate(1-) monarch-merged.owl owl:Class CHEBI:58674 biolink:NamedThing D-fructofuranose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58675 biolink:NamedThing O-phosphonato-L-threonine(2-) monarch-merged.owl owl:Class CHEBI:58681 biolink:NamedThing 5-phospho-beta-D-ribosylaminium(1-) monarch-merged.owl owl:Class CHEBI:58694 biolink:NamedThing D-tagatofuranose 1,6-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:58695 biolink:NamedThing D-tagatofuranose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58698 biolink:NamedThing molybdopterin(3-) monarch-merged.owl owl:Class CHEBI:58702 biolink:NamedThing phosphonatoenolpyruvate monarch-merged.owl owl:Class CHEBI:58712 biolink:NamedThing lipid A(4-) monarch-merged.owl owl:Class CHEBI:58714 biolink:NamedThing beta-L-Ara4N-lipid A(2-) monarch-merged.owl owl:Class CHEBI:58722 biolink:NamedThing N-acetylmuramate 6-phosphate monarch-merged.owl owl:Class CHEBI:58725 biolink:NamedThing 2-ammonio-2-deoxy-D-glucopyranose 6-phosphate(1-) monarch-merged.owl owl:Class CHEBI:58730 biolink:NamedThing 5-carboxylatoamino-1-(5-O-phosphonato-D-ribosyl)imidazole(3-) monarch-merged.owl owl:Class CHEBI:58749 biolink:NamedThing 5-deoxy-alpha-D-ribose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58754 biolink:NamedThing pGpG(3-) monarch-merged.owl owl:Class CHEBI:58756 biolink:NamedThing 2-trans,6-trans,10-trans-geranylgeranyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58759 biolink:NamedThing 6-phosphonatooxy-D-gluconate An organophosphate oxoanion that is a trianion arising from deprotonation of phosphate and carboxylic acid functions of 6-phospho-D-gluconic acid. monarch-merged.owl 6-phospho-D-gluconate|6-O-phosphonato-D-gluconate -3 C6H10O10P InChI=1S/C6H13O10P/c7-2(1-16-17(13,14)15)3(8)4(9)5(10)6(11)12/h2-5,7-10H,1H2,(H,11,12)(H2,13,14,15)/p-3/t2-,3-,4+,5-/m1/s1 BIRSGZKFKXLSJQ-SQOUGZDYSA-K 273.11140 273.00116 O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@@H](O)C([O-])=O Beilstein:3912778 chebi_ontology owl:Class CHEBI:58762 biolink:NamedThing 7,8-dihydroneopterin 3'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58774 biolink:NamedThing 3-dehydro-L-gulonate 6-phosphate monarch-merged.owl owl:Class CHEBI:58779 biolink:NamedThing CDP-choline(1-) Conjugate base of CDP-choline(1+) arising from deprotonation of the diphosphate function. monarch-merged.owl CDP-choline|5'-O-[({[2-(trimethylazaniumyl)ethoxy]phosphinato}oxy)phosphinato]cytidine -1 C14H25N4O11P2 InChI=1S/C14H26N4O11P2/c1-18(2,3)6-7-26-30(22,23)29-31(24,25)27-8-9-11(19)12(20)13(28-9)17-5-4-10(15)16-14(17)21/h4-5,9,11-13,19-20H,6-8H2,1-3H3,(H3-,15,16,21,22,23,24,25)/p-1/t9-,11-,12-,13-/m1/s1 RZZPDXZPRHQOCG-OJAKKHQRSA-M 487.31600 487.10006 C[N+](C)(C)CCOP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1ccc(N)nc1=O Beilstein:4170622 chebi_ontology owl:Class CHEBI:58805 biolink:NamedThing c-di-GMP(2-) monarch-merged.owl owl:Class CHEBI:58819 biolink:NamedThing (R,R)-chrysanthemyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58820 biolink:NamedThing lavandulyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58821 biolink:NamedThing terpentedienyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58822 biolink:NamedThing tuberculosinyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58828 biolink:NamedThing 5-(methylsulfanyl)-2,3-dioxopentyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58830 biolink:NamedThing (2S)-2-hydroxy-3-oxobutyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58837 biolink:NamedThing 2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58838 biolink:NamedThing CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerol(2-) monarch-merged.owl owl:Class CHEBI:58854 biolink:NamedThing 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate(1-) monarch-merged.owl owl:Class CHEBI:58860 biolink:NamedThing hydroxypyruvaldehyde phosphate(2-) monarch-merged.owl owl:Class CHEBI:58861 biolink:NamedThing 1-deoxy-D-threo-hexo-2,5-diulose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58866 biolink:NamedThing (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58870 biolink:NamedThing beta-D-fructofuranosyl alpha-D-mannopyranoside 6(F)-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58881 biolink:NamedThing N-acetyl-D-hexosamine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58890 biolink:NamedThing 2,5-diamino-6-(1-D-ribitylamino)pyrimidin-4(3H)-one 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:58895 biolink:NamedThing 2-carboxylato-4-methyl-5-[(2-phosphonatooxy)ethylidene]-2,5-dihydrothiazole(3-) monarch-merged.owl owl:Class CHEBI:58898 biolink:NamedThing 2-azaniumyl-4,5-dihydroxy-6-oxo-7-(phosphonatooxy)heptanoate(2-) monarch-merged.owl owl:Class CHEBI:58908 biolink:NamedThing L-galactose 1-phosphate(2-) An organophosphate oxoanion that is the dianion of L-galactose 1-phosphate arising from deprotonation of both OH groups of the phosphate. monarch-merged.owl L-galactopyranose-1-phosphate|L-galactose 1-phosphate dianion|1-O-phosphonato-L-galactopyranose|L-galactose 1-phosphate -2 C6H11O9P InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/p-2/t2-,3+,4+,5-,6?/m0/s1 HXXFSFRBOHSIMQ-DHVFOXMCSA-L 258.11990 258.01407 OC[C@@H]1OC(OP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@@H]1O chebi_ontology owl:Class CHEBI:58909 biolink:NamedThing 4-deoxy-4-formamido-alpha-L-arabinopyranosyl ditrans,polycis-undecaprenyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:58914 biolink:NamedThing all-trans-polyprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58923 biolink:NamedThing lipoyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:58933 biolink:NamedThing propanoyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:58937 biolink:NamedThing thiamine(1+) diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58938 biolink:NamedThing thiamine(1+) triphosphate(4-) monarch-merged.owl owl:Class CHEBI:58939 biolink:NamedThing 2-(1-hydroxyethyl)thiamine diphosphate(2-) monarch-merged.owl owl:Class CHEBI:58944 biolink:NamedThing dialkyl phosphate anion monarch-merged.owl owl:Class CHEBI:58946 biolink:NamedThing acyl-CoA oxoanion Any acyl coenzyme A thioester in which one or more of the phosphate and/or diphosphate groups has been deprotonated. monarch-merged.owl acyl-CoA oxoanions chebi_ontology owl:Class CHEBI:59433 biolink:NamedThing 2-phospho-L-lactate monarch-merged.owl owl:Class CHEBI:59435 biolink:NamedThing L-lactyl-2-diphospho-5'-guanosine(3-) monarch-merged.owl owl:Class CHEBI:59505 biolink:NamedThing 2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:59545 biolink:NamedThing 2,5-diamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:59724 biolink:NamedThing ribonucleoside triphosphate oxoanion An organophosphate anion resulting from deprotonation of at least one of the acidic hydroxy groups from the triphosphate moiety of a nucleoside triphosphate. monarch-merged.owl ribonucleoside triphosphate anions|ribonucleoside triphosphate anion|ribonucleoside triphosphate oxoanions chebi_ontology owl:Class CHEBI:59737 biolink:NamedThing nucleotide-sugar oxoanion monarch-merged.owl owl:Class CHEBI:59776 biolink:NamedThing D-glyceraldehyde 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:59906 biolink:NamedThing 2-phosphonato-L-lactate(3-) monarch-merged.owl owl:Class CHEBI:59907 biolink:NamedThing F420-0(3-) monarch-merged.owl owl:Class CHEBI:59918 biolink:NamedThing acyl monophosphate(2-) monarch-merged.owl owl:Class CHEBI:59924 biolink:NamedThing 5,6,7,8-tetrahydrosarcinapterin(4-) monarch-merged.owl owl:Class CHEBI:59955 biolink:NamedThing D-glycero-D-manno-heptose 7-phosphate(2-) monarch-merged.owl owl:Class CHEBI:59957 biolink:NamedThing D-glycero-D-manno-heptose 1,7-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:59985 biolink:NamedThing beta-D-glucosyl-(1->4)-N-acetyl-D-glucosaminyl undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:60023 biolink:NamedThing CoA-glutathione(5-) monarch-merged.owl owl:Class CHEBI:60043 biolink:NamedThing 5'-acylphosphoadenosine(1-) monarch-merged.owl owl:Class CHEBI:60047 biolink:NamedThing N-acetyl-D-glucosaminyl-1-diphospho-ditrans,polycis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:60057 biolink:NamedThing N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-D-glucosaminyl undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:60083 biolink:NamedThing galactitol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:60084 biolink:NamedThing D-glucitol 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:60199 biolink:NamedThing acyl monophosphate(1-) monarch-merged.owl owl:Class CHEBI:60331 biolink:NamedThing 2-O-(6-phospho-alpha-D-mannosyl)-D-glycerate monarch-merged.owl owl:Class CHEBI:60332 biolink:NamedThing alpha-D-mannose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:60369 biolink:NamedThing trans,poly-cis-decaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:60373 biolink:NamedThing lipid IVA oxoanion monarch-merged.owl owl:Class CHEBI:60374 biolink:NamedThing 2-cis,6-cis-farnesyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:60385 biolink:NamedThing ditrans,polycis-tridecaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:60386 biolink:NamedThing ditrans,polycis-dodecaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:60387 biolink:NamedThing ditrans,polycis-tetradecaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:60388 biolink:NamedThing tri-trans,poly-cis-undecaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:60392 biolink:NamedThing ditrans,polycis-undecaprenyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:60487 biolink:NamedThing adenosylcobinamide guanosyl diphosphate(1-) monarch-merged.owl owl:Class CHEBI:60488 biolink:NamedThing cob(I)alamin(1-) monarch-merged.owl owl:Class CHEBI:60493 biolink:NamedThing adenosylcobalamin 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:60494 biolink:NamedThing 5-hydroxybenzimidazolylcob(I)amide(1-) monarch-merged.owl owl:Class CHEBI:60820 biolink:NamedThing 1-C-(indol-3-yl)glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:60929 biolink:NamedThing arbutin 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:61146 biolink:NamedThing 4-nitrophenyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:61186 biolink:NamedThing 7,8-dihydromonapterin 3-triphosphate(4-) monarch-merged.owl owl:Class CHEBI:61227 biolink:NamedThing beta-D-GlcA-(1->2)-alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol(3-) monarch-merged.owl owl:Class CHEBI:61230 biolink:NamedThing beta-D-Man-(1->4)-beta-D-GlcA-(1->2)-alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol(3-) monarch-merged.owl owl:Class CHEBI:61231 biolink:NamedThing L-seryl-AMP(1-) monarch-merged.owl owl:Class CHEBI:61247 biolink:NamedThing beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:61252 biolink:NamedThing alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:61254 biolink:NamedThing alpha-D-glucosyl ditrans,polycis-undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:61304 biolink:NamedThing phosphoglycerate monarch-merged.owl owl:Class CHEBI:61378 biolink:NamedThing 2'-(5-triphosphoribosyl)-3'-dephospho-CoA(6-) monarch-merged.owl owl:Class CHEBI:61381 biolink:NamedThing D-mannitol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:61392 biolink:NamedThing fructoselysine 6-phosphate(1-) monarch-merged.owl owl:Class CHEBI:61417 biolink:NamedThing TDP(3-) monarch-merged.owl owl:Class CHEBI:61495 biolink:NamedThing beta-D-ManNAcA-(1->4)-alpha-D-GlcNAc-1-diphospho-ditrans,polycis-undecaprenol(3-) monarch-merged.owl owl:Class CHEBI:61496 biolink:NamedThing alpha-D-FucNAc4-(1->4)-beta-D-ManNAcA-(1->4)-D-GlcNAc-undecaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:61510 biolink:NamedThing N-acetyl-L-2-aminoadipate 6-phosphate(3-) monarch-merged.owl owl:Class CHEBI:61519 biolink:NamedThing D-psicose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:61527 biolink:NamedThing D-fructofuranose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:61563 biolink:NamedThing farnesyl triphosphate(4-) monarch-merged.owl owl:Class CHEBI:61567 biolink:NamedThing D-hexopyranose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:61662 biolink:NamedThing 2'-deoxyribonucleoside triphosphate oxoanion monarch-merged.owl owl:Class CHEBI:61665 biolink:NamedThing 3-O-(6-O-alpha-D-xylosylphospho-alpha-D-mannopyranosyl)-alpha-D-mannopyranose(1-) monarch-merged.owl owl:Class CHEBI:61698 biolink:NamedThing L-ascorbate 6-phosphate(3-) monarch-merged.owl owl:Class CHEBI:61761 biolink:NamedThing D-mannosyl ditrans,polycis-undecaprenyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:61931 biolink:NamedThing glycerol 1-phosphoserine(1-) monarch-merged.owl owl:Class CHEBI:61933 biolink:NamedThing glycerophosphoglycerol(1-) monarch-merged.owl owl:Class CHEBI:61970 biolink:NamedThing N-acetyl-alpha-D-galactosamine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:61984 biolink:NamedThing (E)-2-methylgeranyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:62041 biolink:NamedThing P(1),P(5)-bis(5'-adenosyl) pentaphosphate(5-) monarch-merged.owl owl:Class CHEBI:62209 biolink:NamedThing CoA-disulfide(8-) monarch-merged.owl owl:Class CHEBI:62233 biolink:NamedThing undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine(2-) monarch-merged.owl owl:Class CHEBI:62234 biolink:NamedThing undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-D-isoglutaminyl-(glycyl)-L-lysyl-D-alanyl-D-alanine(2-) monarch-merged.owl owl:Class CHEBI:62235 biolink:NamedThing undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-D-isoglutaminyl-(glycyl)3-L-lysyl-D-alanyl-D-alanine(2-) monarch-merged.owl owl:Class CHEBI:62236 biolink:NamedThing undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-D-isoglutaminyl-(glycyl)5-L-lysyl-D-alanyl-D-alanine(2-) monarch-merged.owl owl:Class CHEBI:62246 biolink:NamedThing (S)-2-hydroxypropylphosphonate monarch-merged.owl owl:Class CHEBI:62414 biolink:NamedThing biotinyl-5'-AMP(1-) monarch-merged.owl owl:Class CHEBI:62418 biolink:NamedThing 3-oxohexanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62600 biolink:NamedThing 2-O-(alpha-D-glucopyranosyl)-3-O-phosphonato-D-glycerate(3-) monarch-merged.owl owl:Class CHEBI:62602 biolink:NamedThing 2-O-[alpha-D-mannopyranosyl-(1->2)-alpha-D-glucopyranosyl]-3-O-phosphonato-D-glycerate(3-) monarch-merged.owl owl:Class CHEBI:62639 biolink:NamedThing 2-cis,6-trans,10-trans-geranylgeranyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:62643 biolink:NamedThing anionic phospholipid Any organophosphate oxoanion that is a negatively charged phospholipid, e.g. phosphatidylserine(1-), phosphatidate(2-), phosphatidylglycerol(1-). monarch-merged.owl phospholipid anion|phospholipid anions|anionic phospholipids chebi_ontology owl:Class CHEBI:62727 biolink:NamedThing molybdopterin adenine dinucleotide(3-) monarch-merged.owl owl:Class CHEBI:62860 biolink:NamedThing 4,6-Me(COOH)C-beta-D-Man-(1->4)-beta-D-GlcA-(1->2)-alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol(4-) monarch-merged.owl owl:Class CHEBI:62877 biolink:NamedThing 2-deoxy-D-ribofuranose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:62890 biolink:NamedThing 2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate(3-) monarch-merged.owl owl:Class CHEBI:62899 biolink:NamedThing (R,Z)- 2-carboxylato-4-methyl-5-[(2-phosphonatooxy)ethylidene]-2,5-dihydrothiazole(3-) monarch-merged.owl owl:Class CHEBI:62959 biolink:NamedThing N-acetyl-alpha-D-glucosaminyl-1-diphospho-ditrans,polycis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:63165 biolink:NamedThing ribonucleoside monophosphate oxoanion An organophosphate oxoanion resulting from deprotonation of at least one of the acidic hydroxy groups from the phosphate moiety of a ribonucleoside monophosphate. monarch-merged.owl ribonucleoside monophosphate oxoanions chebi_ontology owl:Class CHEBI:63212 biolink:NamedThing 2-hydroxy-dAMP(2-) monarch-merged.owl owl:Class CHEBI:63224 biolink:NamedThing 8-oxo-dGMP(2-) monarch-merged.owl owl:Class CHEBI:63527 biolink:NamedThing TTP(4-) monarch-merged.owl owl:Class CHEBI:63529 biolink:NamedThing guanyl deoxyribonucleotide oxoanion monarch-merged.owl owl:Class CHEBI:63576 biolink:NamedThing maltose 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:63682 biolink:NamedThing (5S,9S,10S,13E)-labda-7,13-dien-15-yl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:63714 biolink:NamedThing 7-methylguanosine 5'-diphosphate(2-) monarch-merged.owl owl:Class CHEBI:63715 biolink:NamedThing 8-oxo-dGDP(3-) monarch-merged.owl owl:Class CHEBI:63740 biolink:NamedThing P(1),P(6)-bis(5'-adenosyl)hexaphosphate(6-) monarch-merged.owl owl:Class CHEBI:63813 biolink:NamedThing adenosine 5'-pentaphosphate(6-) monarch-merged.owl owl:Class CHEBI:64178 biolink:NamedThing (2S)-2-amino-3-oxo-4-(phosphonatooxy)butanoate(3-) monarch-merged.owl owl:Class CHEBI:64267 biolink:NamedThing 5-methyltetrahydrosarcinapterin(4-) monarch-merged.owl owl:Class CHEBI:64283 biolink:NamedThing copal-8-ol diphosphate(3-) monarch-merged.owl owl:Class CHEBI:64285 biolink:NamedThing (-)-bornyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:64514 biolink:NamedThing sarcinapterin(4-) monarch-merged.owl owl:Class CHEBI:64553 biolink:NamedThing tatiopterin(5-) monarch-merged.owl owl:Class CHEBI:64794 biolink:NamedThing salicin-6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:64846 biolink:NamedThing glycyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:64847 biolink:NamedThing L-threonyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:64883 biolink:NamedThing diacetylchitobiose-6'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:65066 biolink:NamedThing trans,octacis-decaprenylphospho-beta-D-arabinofuranose(1-) monarch-merged.owl owl:Class CHEBI:65067 biolink:NamedThing trans,octacis-decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose(1-) monarch-merged.owl owl:Class CHEBI:65078 biolink:NamedThing isopentenyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:65079 biolink:NamedThing trans,polycis-decaprenyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:65080 biolink:NamedThing N-acetyl-alpha-D-glucosaminyl-1-diphospho-trans,polycis-decaprenol(2-) monarch-merged.owl owl:Class CHEBI:65117 biolink:NamedThing CDP-N,N-dimethylethanolamine(1-) monarch-merged.owl owl:Class CHEBI:65180 biolink:NamedThing GDP(2-) monarch-merged.owl owl:Class CHEBI:65317 biolink:NamedThing 2'-deoxynucleoside 5'-monophosphate(2-) monarch-merged.owl owl:Class CHEBI:66881 biolink:NamedThing trans,octacis-decaprenylphospho-beta-D-ribofuranose(1-) monarch-merged.owl owl:Class CHEBI:66911 biolink:NamedThing alpha-D-mannosyl-(1->4)-alpha-L-rhamnosyl-(1->3)-beta-D-galactosyl-1-diphosphodecaprenol(2-) monarch-merged.owl owl:Class CHEBI:66912 biolink:NamedThing alpha-D-abequosyl-(1->3)-alpha-D-mannosyl-(1->4)-alpha-L-rhamnosyl-(1->3)-beta-D-galactosyl-1-diphosphodecaprenol(2-) monarch-merged.owl owl:Class CHEBI:66937 biolink:NamedThing trans,octacis-decaprenylphospho-beta-D-ribofuranose 5-phosphate(3-) monarch-merged.owl owl:Class CHEBI:66949 biolink:NamedThing nucleoside 3'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:66954 biolink:NamedThing 2',3'-cyclic nucleotide(1-) monarch-merged.owl owl:Class CHEBI:67032 biolink:NamedThing O-phosphonatooxyserine(2-) monarch-merged.owl owl:Class CHEBI:67036 biolink:NamedThing O-(N-acetylglucosamine-1-phosphonatooxy)-L-serine(1-) monarch-merged.owl owl:Class CHEBI:67051 biolink:NamedThing phosphopantetheine anion monarch-merged.owl owl:Class CHEBI:67052 biolink:NamedThing glyphosate(2-) monarch-merged.owl owl:Class CHEBI:67140 biolink:NamedThing phosphate monoester dianion monarch-merged.owl owl:Class CHEBI:67209 biolink:NamedThing alpha-L-Rhap-(1->3)-alpha-D-GlcpNAc-1-diphospho-trans,octacis-decaprenol(2-) monarch-merged.owl owl:Class CHEBI:67210 biolink:NamedThing beta-D-Galf-(1->5)-beta-D-Galf-(1->4)-alpha-L-Rhap-(1->3)-alpha-D-GlcpNAc-1-diphospho-trans,octacis-decaprenol(2-) monarch-merged.owl owl:Class CHEBI:67211 biolink:NamedThing beta-D-Galf-(1->4)-alpha-L-Rhap-(1->3)-alpha-D-GlcpNAc-1-diphospho-trans,octacis-decaprenol(2-) monarch-merged.owl owl:Class CHEBI:67212 biolink:NamedThing [beta-D-Galf-(1->5)-beta-D-Galf-(1->6)]14-beta-D-Galf-(1->5)-beta-D-Galf-(1->4)-alpha-L-Rhap-(1->3)-alpha-D-GlcpNAc-1-diphospho-trans,octacis-decaprenol(2-) monarch-merged.owl owl:Class CHEBI:68651 biolink:NamedThing alpha-D-GalNAc-(1->4)-alpha-D-GalNAc-(1->3)-alpha-D-diNAcBac-tritrans,heptacis-undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:68652 biolink:NamedThing N-acetyl-alpha-D-galactosaminyl-(1->3)-N,N'-diacetyl-alpha-D-bacillosaminyl-tritrans,heptacis-undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:68653 biolink:NamedThing [alpha-D-GalNAc-(1->4)]4-alpha-D-GalNAc-(1->3)-alpha-D-diNAcBac-tritrans,heptacis-undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:68654 biolink:NamedThing [alpha-D-GalNAc-(1->4)]2-[beta-D-Glc-(1->3)]-[alpha-D-GalNAc-(1->4)]2-alpha-D-GalNAc-(1->3)-alpha-D-diNAcBac-tritrans,heptacis-undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:68672 biolink:NamedThing N,N'-diacetyl-alpha-D-bacillosaminyl-tritrans,heptacis-undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:68685 biolink:NamedThing alpha-D-ribose 1-methylphosphonate 5-triphosphate(4-) monarch-merged.owl owl:Class CHEBI:68686 biolink:NamedThing alpha-D-ribose 1-methylphosphonate 5-phosphate(3-) monarch-merged.owl owl:Class CHEBI:68687 biolink:NamedThing 5-phosphonato-alpha-D-ribose cyclic-1,2-phosphate(3-) monarch-merged.owl owl:Class CHEBI:68823 biolink:NamedThing alpha-D-ribose 1-methylphosphonate 5-triphosphate(5-) monarch-merged.owl owl:Class CHEBI:68851 biolink:NamedThing poly(glycerol phosphate) anion monarch-merged.owl owl:Class CHEBI:70763 biolink:NamedThing tritrans,heptacis-undecaprenyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:71302 biolink:NamedThing MoO2-molybdopterin cofactor(2-) monarch-merged.owl owl:Class CHEBI:71305 biolink:NamedThing WO2-molybdopterin cofactor(2-) monarch-merged.owl owl:Class CHEBI:71308 biolink:NamedThing Mo(VI)-molybdopterin cytosine dinucleotide(2-) monarch-merged.owl owl:Class CHEBI:71310 biolink:NamedThing Mo(VI)-molybdopterin guanine dinucleotide(2-) monarch-merged.owl owl:Class CHEBI:71312 biolink:NamedThing bis(molybdopterin guanine dinucleotide)molybdenum(4-) monarch-merged.owl owl:Class CHEBI:71315 biolink:NamedThing N'-monoacetylchitobiose-6'-phosphate(1-) monarch-merged.owl owl:Class CHEBI:71361 biolink:NamedThing 8-oxo-dAMP(2-) monarch-merged.owl owl:Class CHEBI:71362 biolink:NamedThing 8-oxo-dADP(3-) monarch-merged.owl owl:Class CHEBI:71363 biolink:NamedThing 2-oxo-dADP(3-) monarch-merged.owl owl:Class CHEBI:71393 biolink:NamedThing adenosine thiamine triphosphate(2-) monarch-merged.owl owl:Class CHEBI:71500 biolink:NamedThing cyclic di-AMP(2-) monarch-merged.owl owl:Class CHEBI:71501 biolink:NamedThing c-GMP-AMP(2-) monarch-merged.owl owl:Class CHEBI:71673 biolink:NamedThing N-acetyl-D-galactosamine 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:71674 biolink:NamedThing D-galactosamine 6-phosphate(1-) monarch-merged.owl owl:Class CHEBI:71677 biolink:NamedThing (2S)-2-hydroxy-3,4-diketopentyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:72748 biolink:NamedThing 3-amino-3-deoxy-6-O-phosphono-D-glucopyranose(1-) monarch-merged.owl owl:Class CHEBI:72777 biolink:NamedThing 7,8-dihydroneopterin 2'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:72778 biolink:NamedThing 4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:72788 biolink:NamedThing 7,8-dihydromethanopterin(3-) monarch-merged.owl owl:Class CHEBI:72950 biolink:NamedThing (7,8-dihydropterin-6-yl)methyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:72951 biolink:NamedThing N-[(7,8-dihydropterin-6-yl)methyl]-4-(beta-D-ribofuranosyl)aniline 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:73316 biolink:NamedThing 2'-deoxyribonucleoside 5'-diphosphate(3-) monarch-merged.owl owl:Class CHEBI:73674 biolink:NamedThing carbamoyl adenylate(1-) monarch-merged.owl owl:Class CHEBI:73682 biolink:NamedThing L-threonylcarbamoyladenylate(2-) monarch-merged.owl owl:Class CHEBI:73973 biolink:NamedThing beta-D-Gal-(1->3)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:73984 biolink:NamedThing beta-D-Gal-(1->4)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:73986 biolink:NamedThing beta-D-Glc-(1->3)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:73987 biolink:NamedThing alpha-D-GalNAc-(1->3)-alpha-D-GalNAc-diphospho-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:73988 biolink:NamedThing beta-D-Gal-(1->3)-alpha-D-GalNAc-(1->3)-alpha-D-GalNAc-diphospho-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:73991 biolink:NamedThing alpha-L-Fuc-(1->2)-beta-D-Gal-(1->3)-alpha-D-GalNAc-(1->3)-alpha-D-GalNAc-diphospho-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:73993 biolink:NamedThing alpha-D-Gal-(1->3)-[alpha-L-Fuc-(1->2)]-beta-D-Gal-(1->3)-alpha-D-GalNAc-(1->3)-alpha-D-GalNAc-diphospho-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:74004 biolink:NamedThing CDP-2,3-bis-O-(phytanyl)-sn-glycerol(2-) monarch-merged.owl owl:Class CHEBI:74008 biolink:NamedThing 3-O-phospho-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)]n-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-GlcNAc-ditrans,octacis-undecaprenol(4-) monarch-merged.owl owl:Class CHEBI:74009 biolink:NamedThing 3-O-methylphospho-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)]n-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-GlcNAc-ditrans,octacis-undecaprenol(3-) monarch-merged.owl owl:Class CHEBI:74010 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)]n-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-Man-(1->3)-alpha-D-GlcNAc-ditrans,octacis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:74214 biolink:NamedThing N-acetyl-alpha-D-galactosaminyl-1-diphospho-ditrans,polycis-undecaprenol(2-) monarch-merged.owl owl:Class CHEBI:74434 biolink:NamedThing N(2),N(2),N(7)-trimethylguanosine 5'-phosphate(1-) monarch-merged.owl owl:Class CHEBI:74604 biolink:NamedThing guanosine 2'-monophosphate(2-) monarch-merged.owl owl:Class CHEBI:74955 biolink:NamedThing O(4)-phosphonatotyrosine(2-) monarch-merged.owl owl:Class CHEBI:74997 biolink:NamedThing mannosyl diphosphorylinositol ceramide(2-) monarch-merged.owl owl:Class CHEBI:75052 biolink:NamedThing 3-dehydro-D-glucose-6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:75483 biolink:NamedThing phytyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:75705 biolink:NamedThing D-glucosaminic acid 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:75967 biolink:NamedThing nicotinate-adenine dinucleotide phosphate(4-) An organophosphate oxoanion obtained by deprotonation of the phosphate, diphosphate and carboxy groups of nicotinic acid-adenine dinucleotide phosphate. monarch-merged.owl nicotinate-adenine dinucleotide phosphate(4-)|NAADP(4+)|nicotinate-adenine dinucleotide phosphate -4 C21H23N6O18P3 InChI=1S/C21H27N6O18P3/c22-17-12-18(24-7-23-17)27(8-25-12)20-16(44-46(33,34)35)14(29)11(43-20)6-41-48(38,39)45-47(36,37)40-5-10-13(28)15(30)19(42-10)26-3-1-2-9(4-26)21(31)32/h1-4,7-8,10-11,13-16,19-20,28-30H,5-6H2,(H6-,22,23,24,31,32,33,34,35,36,37,38,39)/p-4/t10-,11-,13-,14-,15-,16-,19-,20-/m1/s1 QOTXBMGJKFVZRD-HISDBWNOSA-J 740.35800 740.03036 Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)[n+]2cccc(c2)C([O-])=O)[C@@H](O)[C@H]1OP([O-])([O-])=O PMID:11829748|PMID:16690024|Reaxys:11025115|MetaCyc:CPD-15009 chebi_ontology owl:Class CHEBI:75992 biolink:NamedThing phenyl 5-phosphonato-alpha-D-ribofuranoside(2-) monarch-merged.owl owl:Class CHEBI:76202 biolink:NamedThing riboflavin cyclic 4',5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:76301 biolink:NamedThing inositol phosphate oxoanion monarch-merged.owl owl:Class CHEBI:77134 biolink:NamedThing 6-deoxy-6-sulfo-D-fructofuranose 1-phosphate(3-) monarch-merged.owl owl:Class CHEBI:77657 biolink:NamedThing 5-amino-1-(5-phosphonato-D-ribosyl)imidazolium-4-carboxylate(2-) monarch-merged.owl owl:Class CHEBI:77740 biolink:NamedThing adenosine 2'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:77766 biolink:NamedThing cytidine 2'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:77802 biolink:NamedThing uridine 2'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:77828 biolink:NamedThing guanosine 3',5'-bis(diphosphate)(5-) monarch-merged.owl owl:Class CHEBI:77847 biolink:NamedThing glycerol 1-phosphodiester(1-) monarch-merged.owl owl:Class CHEBI:77851 biolink:NamedThing (2S)-2-ammonio-3-oxo-4-(phosphonatooxy)butanoate(2-) monarch-merged.owl owl:Class CHEBI:78318 biolink:NamedThing pppGp(2'->5')A(5-) monarch-merged.owl owl:Class CHEBI:78345 biolink:NamedThing D-ribofuranose-2,5-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:78346 biolink:NamedThing D-ribofuranose 5-phosphate(2-) monarch-merged.owl owl:Class CHEBI:78552 biolink:NamedThing ribonucleoside 2'-monophosphate(2-) monarch-merged.owl owl:Class CHEBI:79080 biolink:NamedThing lactose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:79081 biolink:NamedThing cyclic 2,3-bisphospho-D-glycerate(3-) monarch-merged.owl owl:Class CHEBI:82685 biolink:NamedThing Mo(=O)(=S)-molybdopterin cofactor(2-) monarch-merged.owl owl:Class CHEBI:82767 biolink:NamedThing 4-(5-O-phosphonato-beta-D-ribofuranosyl)phenol(2-) monarch-merged.owl owl:Class CHEBI:82774 biolink:NamedThing (R)-3,5-bisphosphonatomevalonate(5-) monarch-merged.owl owl:Class CHEBI:83374 biolink:NamedThing all-cis-polyprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:83402 biolink:NamedThing nucleoside 3',5'-bisphosphate(4-) monarch-merged.owl owl:Class CHEBI:83407 biolink:NamedThing 4-(phosphooxymethyl)-2-furancarboxaldehyde(2-) monarch-merged.owl owl:Class CHEBI:83431 biolink:NamedThing [5-(ammoniomethyl)-3-furyl]methyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:83622 biolink:NamedThing fatty acyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:83662 biolink:NamedThing lysidine monophosphate(1-) monarch-merged.owl owl:Class CHEBI:83958 biolink:NamedThing (2E,6E,10E)-omega-hydroxyfarnesyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:84359 biolink:NamedThing 3-hydroxy-2,4-dioxopentyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:84362 biolink:NamedThing 2-epi-5-epi-valiolone 7-phosphate(2-) monarch-merged.owl owl:Class CHEBI:84760 biolink:NamedThing 2-deoxy-D-glucopyranose 6-phosphate(2-) monarch-merged.owl owl:Class CHEBI:84975 biolink:NamedThing acarbose 7(IV)-phosphate(1-) monarch-merged.owl owl:Class CHEBI:85134 biolink:NamedThing 12-(phosphonooxy)octadecanoate(3-) monarch-merged.owl owl:Class CHEBI:85137 biolink:NamedThing (9E)-12-(phosphonooxy)octadecenoate(3-) monarch-merged.owl owl:Class CHEBI:85141 biolink:NamedThing (9Z)-12-(phosphonooxy)octadecenoate(3-) monarch-merged.owl owl:Class CHEBI:85985 biolink:NamedThing 3-deoxy-alpha-D-manno-2-octulosonate-8-phosphate(3-) monarch-merged.owl owl:Class CHEBI:86435 biolink:NamedThing 4-hydroxybenzoyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:86458 biolink:NamedThing 2-hydroxybenzoyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:86460 biolink:NamedThing (R)-lipoyl-GMP(1-) monarch-merged.owl owl:Class CHEBI:86994 biolink:NamedThing carboxyphosphate(2-) monarch-merged.owl owl:Class CHEBI:87089 biolink:NamedThing 2-O-(alpha-D-glucosyl)-sn-glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:87125 biolink:NamedThing 5-epi-valiolone 7-phosphate(2-) monarch-merged.owl owl:Class CHEBI:87133 biolink:NamedThing 7-methyl-GTP(3-) monarch-merged.owl owl:Class CHEBI:87356 biolink:NamedThing (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E)-decaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:87467 biolink:NamedThing prenyl-FMNH2(2-) monarch-merged.owl owl:Class CHEBI:87518 biolink:NamedThing ADP(2-) An organophosphate oxoanion obtained by deprotonation of two of the three diphosphate OH groups of adenosine 5'-diphosphate. monarch-merged.owl 5'-O-{[(hydroxyphosphinato)oxy]phosphinato}adenosine -2 C10H13N5O10P2 InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/p-2/t4-,6-,7-,10-/m1/s1 XTWYTFMLZFPYCI-KQYNXXCUSA-L 425.18630 425.01486 Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O Reaxys:7558006 chebi_ontology owl:Class CHEBI:87673 biolink:NamedThing 2-O-(alpha-D-mannopyranosyl)-1-phosphatidyl-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:87817 biolink:NamedThing D-ribitol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:87947 biolink:NamedThing 9-ribosyl-trans-zeatin 5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:87950 biolink:NamedThing 9-ribosyl-trans-zeatin 5'-diphosphate(3-) monarch-merged.owl owl:Class CHEBI:87953 biolink:NamedThing 9-ribosyl-trans-zeatin 5'-triphosphate(4-) monarch-merged.owl owl:Class CHEBI:88021 biolink:NamedThing archaeal dolichyl N-acetyl-alpha-D-glucosaminyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:88026 biolink:NamedThing archaeal dolichyl 3-O-(2,3-diacetamido-2,3-dideoxy- beta-D-glucuronsyl)-N-acetyl- alpha-D-glucosaminyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:88052 biolink:NamedThing prenyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:88054 biolink:NamedThing [5-(ammoniomethyl)-3-furyl]methyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:88107 biolink:NamedThing geranyl phosphate(2-) monarch-merged.owl owl:Class CHEBI:88137 biolink:NamedThing 2-hydro-beta-NADP(4-) monarch-merged.owl owl:Class CHEBI:88138 biolink:NamedThing 2-hydro-beta-NAD(2-) monarch-merged.owl owl:Class CHEBI:88139 biolink:NamedThing 6-hydro-beta-NADP(4-) monarch-merged.owl owl:Class CHEBI:88140 biolink:NamedThing 6-hydro-beta-NAD(2-) monarch-merged.owl owl:Class CHEBI:88226 biolink:NamedThing (2E,6E)-farnesyl monophosphate(2-) monarch-merged.owl owl:Class CHEBI:90409 biolink:NamedThing 5-hydroxymethyluridine-2'-deoxy-5'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:90796 biolink:NamedThing D-erythrulose 4-phosphate(2-) monarch-merged.owl owl:Class CHEBI:90798 biolink:NamedThing L-erythrulose 4-phosphate(2-) monarch-merged.owl owl:Class CHEBI:90832 biolink:NamedThing NMNH(2-) monarch-merged.owl owl:Class CHEBI:90987 biolink:NamedThing 3-deoxy-D-glycero-beta-D-galacto-nonulosonate 9-phosphate(3-) monarch-merged.owl owl:Class CHEBI:91002 biolink:NamedThing sucrose 6(G)-phosphate(2-) monarch-merged.owl owl:Class CHEBI:91013 biolink:NamedThing D-ribose 5-triphosphate(4-) monarch-merged.owl owl:Class CHEBI:91177 biolink:NamedThing maltose 6'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:91232 biolink:NamedThing 2-amino-3-hydroxy-4-methylbenzoyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:91234 biolink:NamedThing 17-(4-hydroxyphenyl)heptadecanoyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:91235 biolink:NamedThing 19-(4-hydroxyphenyl)nonadecanoyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:91252 biolink:NamedThing valienol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:91253 biolink:NamedThing GDP-valienol(2-) monarch-merged.owl owl:Class CHEBI:91255 biolink:NamedThing CMP-5'-phosphonoformate(3-) monarch-merged.owl owl:Class CHEBI:8100 biolink:NamedThing 3-phenyllactate monarch-merged.owl owl:Class CHEBI:32979 biolink:NamedThing (S)-3-phenyllactate monarch-merged.owl owl:Class CHEBI:11010 biolink:NamedThing (R)-phenyllactoyl-CoA monarch-merged.owl owl:Class CHEBI:17984 biolink:NamedThing acyl-CoA A thioester that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of any carboxylic acid. monarch-merged.owl Acyl coenzyme A|Acyl-CoA 0 C22H35N7O17P3SR 794.53600 794.10230 CC(C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O PMID:21514367|CAS:9029-97-4|PMID:11264983|PMID:16495773|KEGG:C00040|PMID:21541677|PMID:11524729 CHEBI:13727|CHEBI:2455|CHEBI:22223|CHEBI:13802 chebi_ontology owl:Class CHEBI:12755 biolink:NamedThing indol-3-ylacetyl-CoA monarch-merged.owl owl:Class CHEBI:131952 biolink:NamedThing 2-aminobenzoylacetyl-CoA monarch-merged.owl owl:Class CHEBI:139035 biolink:NamedThing L-firefly luciferyl-CoA monarch-merged.owl owl:Class CHEBI:14261 biolink:NamedThing feruloyl-CoA monarch-merged.owl owl:Class CHEBI:15351 biolink:NamedThing acetyl-CoA monarch-merged.owl owl:Class CHEBI:15474 biolink:NamedThing 2-furoyl-CoA monarch-merged.owl owl:Class CHEBI:15502 biolink:NamedThing 5-hydroxythiophene-2-carbonyl-CoA monarch-merged.owl owl:Class CHEBI:15507 biolink:NamedThing beta-alanyl-CoA monarch-merged.owl owl:Class CHEBI:15509 biolink:NamedThing 4-(2-carboxyphenyl)-4-oxobutanoyl-CoA monarch-merged.owl owl:Class CHEBI:15510 biolink:NamedThing 5-hydroxy-2-furoyl-CoA monarch-merged.owl owl:Class CHEBI:15516 biolink:NamedThing biotinyl-CoA monarch-merged.owl owl:Class CHEBI:15518 biolink:NamedThing caffeoyl-CoA monarch-merged.owl owl:Class CHEBI:15522 biolink:NamedThing formyl-CoA monarch-merged.owl owl:Class CHEBI:15537 biolink:NamedThing phenylacetyl-CoA monarch-merged.owl owl:Class CHEBI:15539 biolink:NamedThing propionyl-CoA monarch-merged.owl owl:Class CHEBI:15542 biolink:NamedThing thiophene-2-carbonyl-CoA monarch-merged.owl owl:Class CHEBI:18206 biolink:NamedThing 2-amino-5-oxocyclohex-1-enecarbonyl-CoA monarch-merged.owl owl:Class CHEBI:25136 biolink:NamedThing malonyl-CoAs monarch-merged.owl owl:Class CHEBI:27639 biolink:NamedThing (E)-2-benzylidenesuccinyl-CoA monarch-merged.owl owl:Class CHEBI:27754 biolink:NamedThing methacrylyl-CoA monarch-merged.owl owl:Class CHEBI:28005 biolink:NamedThing cyclohex-1-ene-1-carbonyl-CoA monarch-merged.owl owl:Class CHEBI:28557 biolink:NamedThing cyclohexane-1-carbonyl-CoA monarch-merged.owl owl:Class CHEBI:28684 biolink:NamedThing 4-acetamidobutanoyl-CoA monarch-merged.owl owl:Class CHEBI:31103 biolink:NamedThing 3,5-dihydroxyphenylacetyl-CoA monarch-merged.owl owl:Class CHEBI:37554 biolink:NamedThing fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:37555 biolink:NamedThing omega-carboxyacyl-CoA monarch-merged.owl owl:Class CHEBI:50117 biolink:NamedThing phenylglyoxylyl-CoA monarch-merged.owl owl:Class CHEBI:52135 biolink:NamedThing steroidal acyl-CoA monarch-merged.owl owl:Class CHEBI:52668 biolink:NamedThing 1,4-dihydroxy-2-naphthoyl-CoA monarch-merged.owl owl:Class CHEBI:61123 biolink:NamedThing (E)-4-(trimethylammonio)but-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:61517 biolink:NamedThing gamma-butyrobetainyl-CoA monarch-merged.owl owl:Class CHEBI:61940 biolink:NamedThing aroyl-CoA monarch-merged.owl owl:Class CHEBI:61992 biolink:NamedThing sulfoacetyl-CoA monarch-merged.owl owl:Class CHEBI:62048 biolink:NamedThing haloacyl-CoA monarch-merged.owl owl:Class CHEBI:62618 biolink:NamedThing hydroxyacyl-CoA monarch-merged.owl owl:Class CHEBI:63251 biolink:NamedThing 2-oxepin-2(3H)-ylideneacetyl-CoA monarch-merged.owl owl:Class CHEBI:63253 biolink:NamedThing 3-oxo-5,6-dehydrosuberyl-CoA monarch-merged.owl owl:Class CHEBI:63256 biolink:NamedThing 3,8-dioxooct-5-enoyl-CoA monarch-merged.owl owl:Class CHEBI:63547 biolink:NamedThing 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA monarch-merged.owl owl:Class CHEBI:64819 biolink:NamedThing [(2R)-3,3,4-trimethyl-6-oxo-3,6-dihydro-1H-pyran-2-yl]acetyl-CoA monarch-merged.owl owl:Class CHEBI:64900 biolink:NamedThing [(1R)-2,2,3-trimethyl-5-oxocyclopent-3-enyl]acetyl-CoA monarch-merged.owl owl:Class CHEBI:65122 biolink:NamedThing 3-substituted propionyl-CoA monarch-merged.owl owl:Class CHEBI:71215 biolink:NamedThing (4-coumaroyl)acetyl-CoA monarch-merged.owl owl:Class CHEBI:71236 biolink:NamedThing feruloylacetyl-CoA monarch-merged.owl owl:Class CHEBI:71243 biolink:NamedThing (2Z)-4-carboxy-2-sulfanylbut-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:71244 biolink:NamedThing malonyl-CoA methyl ester monarch-merged.owl owl:Class CHEBI:71313 biolink:NamedThing 4-carboxy-2-thioxobutanoyl-CoA monarch-merged.owl owl:Class CHEBI:76423 biolink:NamedThing trans-2-octenedioyl-CoA monarch-merged.owl owl:Class CHEBI:76426 biolink:NamedThing 3-oxooctanedioyl-CoA monarch-merged.owl owl:Class CHEBI:76427 biolink:NamedThing trans-2-dodecenedioyl-CoA monarch-merged.owl owl:Class CHEBI:76439 biolink:NamedThing 3-oxododecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:76443 biolink:NamedThing trans-2-decenedioyl-CoA monarch-merged.owl owl:Class CHEBI:76445 biolink:NamedThing 3-oxodecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:77170 biolink:NamedThing (2E)-tetradecenedioyl-CoA monarch-merged.owl owl:Class CHEBI:77172 biolink:NamedThing 3-oxotetradecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:77183 biolink:NamedThing (2E)-hexadecenedioyl-CoA monarch-merged.owl owl:Class CHEBI:77191 biolink:NamedThing 3-oxohexadecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:77207 biolink:NamedThing tetradecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:77208 biolink:NamedThing hexadecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:79221 biolink:NamedThing 3-sulfinopropionyl-CoA monarch-merged.owl owl:Class CHEBI:79246 biolink:NamedThing 9,17-dioxo-1,2,3,4,10,19-hexanorandrostan-5-oyl-CoA monarch-merged.owl owl:Class CHEBI:79293 biolink:NamedThing 2-hydroxy-7-methoxy-5-methyl-1-naphthoyl-CoA monarch-merged.owl owl:Class CHEBI:81672 biolink:NamedThing (2S)-methylsuccinyl-CoA monarch-merged.owl owl:Class CHEBI:83170 biolink:NamedThing (3R)-3-amino-3-phenylpropanoyl-CoA monarch-merged.owl owl:Class CHEBI:83579 biolink:NamedThing 3-(methylthio)propanoyl-CoA monarch-merged.owl owl:Class CHEBI:84127 biolink:NamedThing 2-carboxyacyl-CoA monarch-merged.owl owl:Class CHEBI:84601 biolink:NamedThing 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydroinden-4-yl]propanoyl-CoA monarch-merged.owl owl:Class CHEBI:85528 biolink:NamedThing 3-(methylthio)acryloyl-CoA monarch-merged.owl owl:Class CHEBI:85529 biolink:NamedThing 3-hydroxy-3-(methylthio)propanoyl-CoA monarch-merged.owl owl:Class CHEBI:85675 biolink:NamedThing 3-phenylpropanoyl-CoA monarch-merged.owl owl:Class CHEBI:85886 biolink:NamedThing 3-dehydrocarnityl CoA monarch-merged.owl owl:Class CHEBI:85888 biolink:NamedThing N,N,N-trimethylglycyl-CoA monarch-merged.owl owl:Class CHEBI:87451 biolink:NamedThing dihydrocaffeoyl-CoA monarch-merged.owl owl:Class CHEBI:87996 biolink:NamedThing 3-(m-hydroxyphenyl)propanoyl-CoA monarch-merged.owl owl:Class CHEBI:90162 biolink:NamedThing 2,3-epoxy-2,3-dihydrobenzoyl-CoA monarch-merged.owl owl:Class CHEBI:90176 biolink:NamedThing 2,5-dihydroxybenzoyl-CoA monarch-merged.owl owl:Class CHEBI:11022 biolink:NamedThing (S)-4-amino-5-oxopentanoate monarch-merged.owl owl:Class CHEBI:35757 biolink:NamedThing monocarboxylic acid anion A carboxylic acid anion formed when the carboxy group of a monocarboxylic acid is deprotonated. monarch-merged.owl a monocarboxylate|monocarboxylic acid anions|Carboxylate|monocarboxylates|Monocarboxylate -1 CO2R 44.01000 43.98983 [O-]C([*])=O KEGG:C00060 CHEBI:25382|CHEBI:3407|CHEBI:13657 chebi_ontology owl:Class CHEBI:11892 biolink:NamedThing N-carbamoyl-beta-alaninate monarch-merged.owl owl:Class CHEBI:11951 biolink:NamedThing 4-acetamidobutanoate monarch-merged.owl owl:Class CHEBI:12109 biolink:NamedThing 5-aminolevulinate monarch-merged.owl 5-amino-4-oxopentanoate -1 C5H8NO3 InChI=1S/C5H9NO3/c6-3-4(7)1-2-5(8)9/h1-3,6H2,(H,8,9)/p-1 ZGXJTSGNIOSYLO-UHFFFAOYSA-M 130.12196 130.05097 NCC(=O)CCC([O-])=O Beilstein:3937762 chebi_ontology owl:Class CHEBI:131444 biolink:NamedThing guanidinoacetate monarch-merged.owl owl:Class CHEBI:131929 biolink:NamedThing (E)-3-(indol-3-yl)acrylate(1-) monarch-merged.owl owl:Class CHEBI:131932 biolink:NamedThing glycosmisate monarch-merged.owl owl:Class CHEBI:131933 biolink:NamedThing (-)-DCA-CL(1-) monarch-merged.owl owl:Class CHEBI:131936 biolink:NamedThing (+)-DCA-CL(1-) monarch-merged.owl owl:Class CHEBI:131937 biolink:NamedThing ent-glycosmisate monarch-merged.owl owl:Class CHEBI:131981 biolink:NamedThing (1R,10aS)-1,4,10,10a-tetrahydrophenazine-1-carboxylate monarch-merged.owl owl:Class CHEBI:132003 biolink:NamedThing (10aS)-10,10a-dihydrophenazine-1-carboxylate monarch-merged.owl owl:Class CHEBI:132005 biolink:NamedThing (1R)-1,4,5,10-tetrahydrophenazine-1-carboxylate monarch-merged.owl owl:Class CHEBI:132072 biolink:NamedThing N-arachidonoyl-gamma-aminobutyrate monarch-merged.owl owl:Class CHEBI:132073 biolink:NamedThing N-[(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]glycinate monarch-merged.owl owl:Class CHEBI:132075 biolink:NamedThing N-[(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]-gamma-aminobutanoate monarch-merged.owl owl:Class CHEBI:132076 biolink:NamedThing N-[(15S)-hydroperoxy-(5Z,8Z,11Z,13E)-icosatetraenoyl]glycinate monarch-merged.owl owl:Class CHEBI:132078 biolink:NamedThing N-[(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]-gamma-aminobutyrate monarch-merged.owl owl:Class CHEBI:132151 biolink:NamedThing beta-D-4-deoxy-Delta(4)-GlcpA-(1->3)-D-GlcpNAc(1-) monarch-merged.owl owl:Class CHEBI:132957 biolink:NamedThing N-acetylmethioninate monarch-merged.owl owl:Class CHEBI:133476 biolink:NamedThing hydantoin-5-propionate monarch-merged.owl owl:Class CHEBI:133519 biolink:NamedThing 5alpha-androstane-3alpha,17beta-diol 17-glucosiduronate monarch-merged.owl owl:Class CHEBI:133520 biolink:NamedThing N-acetyl-L-alaninate monarch-merged.owl owl:Class CHEBI:133549 biolink:NamedThing N-acetyl-L-threoninate monarch-merged.owl owl:Class CHEBI:133575 biolink:NamedThing N-acyl-gamma-aminobutyrate monarch-merged.owl owl:Class CHEBI:133580 biolink:NamedThing N-hexanoylglycinate A monocarboxylic acid anion that is the conjugate base of N-hexanoylglycine, obtained by deprotonation of the carboxy group; major species at pH 7.3. monarch-merged.owl (hexanoylamino)acetate|N-hexanoylglycine(1-)|N-hexanoylglycine|N-hexanoylglycine anion|N-caproylglycinate -1 C8H14NO3 InChI=1S/C8H15NO3/c1-2-3-4-5-7(10)9-6-8(11)12/h2-6H2,1H3,(H,9,10)(H,11,12)/p-1 UPCKIPHSXMXJOX-UHFFFAOYSA-M 172.202 172.09792 N(CC([O-])=O)C(CCCCC)=O chebi_ontology owl:Class CHEBI:133610 biolink:NamedThing N-isobutyrylglycinate A monocarboxylic acid anion that is the conjugate base of N-isobutyrylglycine, obtained by deprotonation of the carboxy group; major species at pH 7.3. monarch-merged.owl isobutanoylglycinate|N-(2-methylpropanoyl)glycinate|(2-methylpropanamido)acetate|isobutyrylglycinate|N-isobutanoylglycinate -1 C6H10NO3 InChI=1S/C6H11NO3/c1-4(2)6(10)7-3-5(8)9/h4H,3H2,1-2H3,(H,7,10)(H,8,9)/p-1 DCICDMMXFIELDF-UHFFFAOYSA-M 144.149 144.06662 C(CNC(=O)C(C)C)(=O)[O-] HMDB:HMDB0000730 chebi_ontology owl:Class CHEBI:133716 biolink:NamedThing N-acetyl-L-valinate monarch-merged.owl owl:Class CHEBI:134233 biolink:NamedThing (4S)-4,16-dihydroxyretinoate monarch-merged.owl owl:Class CHEBI:136067 biolink:NamedThing 3-aci-nitropropanoate monarch-merged.owl owl:Class CHEBI:136282 biolink:NamedThing 9-[(9Z)-octadecenoyloxy]octadecanoate monarch-merged.owl owl:Class CHEBI:136302 biolink:NamedThing 12-[(9Z)-octadecenoyloxy]octadecanoate monarch-merged.owl owl:Class CHEBI:136303 biolink:NamedThing 13-[(9Z)-octadecenoyloxy]octadecanoate monarch-merged.owl owl:Class CHEBI:136309 biolink:NamedThing 9-[(9Z)-hexadecenoyloxy]octadecanoate monarch-merged.owl owl:Class CHEBI:136312 biolink:NamedThing 12-[(9Z)-hexadecenoyloxy]octadecanoate monarch-merged.owl owl:Class CHEBI:136315 biolink:NamedThing 13-[(9Z)-hexadecenoyloxy]octadecanoate monarch-merged.owl owl:Class CHEBI:136330 biolink:NamedThing 12-(octadecanoyloxy)octadecanoate monarch-merged.owl owl:Class CHEBI:136335 biolink:NamedThing 13-(octadecanoyloxy)octadecanoate monarch-merged.owl owl:Class CHEBI:136369 biolink:NamedThing 5-[(9Z)-hexadecenoyloxy]octadecanoate monarch-merged.owl owl:Class CHEBI:136373 biolink:NamedThing 9-(octadecanoyloxy)octadecanoate monarch-merged.owl owl:Class CHEBI:136389 biolink:NamedThing 5-[(9Z)-octadecenoyloxy]octadecanoate monarch-merged.owl owl:Class CHEBI:136512 biolink:NamedThing bacteriochlorophyllide e(1-) monarch-merged.owl owl:Class CHEBI:136513 biolink:NamedThing 7,7-dihydroxybacteriochlorophyllide c(1-) monarch-merged.owl owl:Class CHEBI:136766 biolink:NamedThing N-acetyl-L-alpha-phenylglycinate monarch-merged.owl owl:Class CHEBI:136881 biolink:NamedThing 3-carboxy-3-hydroxypropanoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:136882 biolink:NamedThing 17-epiestriol 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136883 biolink:NamedThing 17-epiestriol 17-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136884 biolink:NamedThing 17-epiestriol 16-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136885 biolink:NamedThing 16-epiestriol 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136886 biolink:NamedThing 16-epiestriol 16-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136899 biolink:NamedThing chenodeoxycholic acid 24-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136900 biolink:NamedThing cholic acid 24-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136901 biolink:NamedThing deoxycholic acid 24-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136902 biolink:NamedThing lithocholic acid 24-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136903 biolink:NamedThing hyodeoxycholic acid 24-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136904 biolink:NamedThing hyocholic acid 24-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136914 biolink:NamedThing 5alpha-dihydrotestosterone 17-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136931 biolink:NamedThing 2-hydroxy-17beta-estradiol 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136933 biolink:NamedThing 2-hydroxy-17beta-estradiol 2-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136936 biolink:NamedThing 4-hydroxy-17beta-estradiol 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136937 biolink:NamedThing 4-hydroxy-17beta-estradiol 4-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136967 biolink:NamedThing 2-hydroxyestrone 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136969 biolink:NamedThing 4-hydroxyestrone 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136970 biolink:NamedThing 4-hydroxyestrone 4-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136971 biolink:NamedThing 2-methoxyestrone 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136973 biolink:NamedThing 4-methoxyestrone 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136974 biolink:NamedThing 2-methoxy-17beta-estradiol 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136976 biolink:NamedThing 4-methoxy-17beta-estradiol 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:137108 biolink:NamedThing 5-dehydro-L-gluconate monarch-merged.owl owl:Class CHEBI:137673 biolink:NamedThing 3-sulfinatopropionate monarch-merged.owl owl:Class CHEBI:138056 biolink:NamedThing 2,4,5-trihydroxyphenylacetate monarch-merged.owl owl:Class CHEBI:138269 biolink:NamedThing 1-O-hexadecyl-2-(8-carboxyoctanoyl)-sn-glycero-3-phosphocholine(1-) monarch-merged.owl owl:Class CHEBI:138329 biolink:NamedThing ent-Photinus luciferin(1-) monarch-merged.owl owl:Class CHEBI:138358 biolink:NamedThing 4-sulfanylbutanoate monarch-merged.owl owl:Class CHEBI:138600 biolink:NamedThing 4,4'-diapolycopen-4-oate monarch-merged.owl owl:Class CHEBI:13862 biolink:NamedThing asparagusate monarch-merged.owl owl:Class CHEBI:138661 biolink:NamedThing N-hexadecanoyl-O-(1-octadecanoyl-2-oleoyl-sn-glycero-3-phospho)-L-serine(2-) monarch-merged.owl owl:Class CHEBI:138946 biolink:NamedThing cochalate monarch-merged.owl owl:Class CHEBI:139183 biolink:NamedThing 5,6-epoxyretinoate monarch-merged.owl owl:Class CHEBI:139237 biolink:NamedThing bacteriochlorophyllide f(1-) monarch-merged.owl owl:Class CHEBI:139240 biolink:NamedThing 7(1)-hydroxybacteriochlorophyllide d(1-) monarch-merged.owl owl:Class CHEBI:139242 biolink:NamedThing 7(1),7(1)-dihydroxybacteriochlorophyllide d(1-) monarch-merged.owl owl:Class CHEBI:139292 biolink:NamedThing chlorophyllide(2-) monarch-merged.owl owl:Class CHEBI:139509 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-beta-D-glucosaminide(1-) monarch-merged.owl owl:Class CHEBI:139596 biolink:NamedThing N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminide(1-) monarch-merged.owl owl:Class CHEBI:140466 biolink:NamedThing hederagenin(1-) monarch-merged.owl owl:Class CHEBI:140467 biolink:NamedThing gypsogenin(1-) monarch-merged.owl owl:Class CHEBI:140758 biolink:NamedThing N-carbamoyl-D-phenylglycine(1-) monarch-merged.owl owl:Class CHEBI:140764 biolink:NamedThing beta-D-galactosyl-(1->3)-[N-acetyl-alpha-neuraminyl-(2->6)]-N-acetyl-alpha-D-galactosaminide(1-) monarch-merged.owl owl:Class CHEBI:143136 biolink:NamedThing succinamate monarch-merged.owl owl:Class CHEBI:143877 biolink:NamedThing N-acetyl-L-tryptophanate monarch-merged.owl owl:Class CHEBI:145735 biolink:NamedThing (Z)-3-amino-2-methylacrylate monarch-merged.owl owl:Class CHEBI:146022 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-N-acetyl-beta-D-glucosaminide(1-) monarch-merged.owl owl:Class CHEBI:149509 biolink:NamedThing candesartan(2-) monarch-merged.owl owl:Class CHEBI:15036 biolink:NamedThing retinoate monarch-merged.owl 3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenoate|retinoate -1 C20H27O2 InChI=1S/C20H28O2/c1-15(8-6-9-16(2)14-19(21)22)11-12-18-17(3)10-7-13-20(18,4)5/h6,8-9,11-12,14H,7,10,13H2,1-5H3,(H,21,22)/p-1 SHGAZHPCJJPHSC-UHFFFAOYSA-M 299.42718 299.20165 CC(C=CC1=C(C)CCCC1(C)C)=CC=CC(C)=CC([O-])=O chebi_ontology owl:Class CHEBI:15237 biolink:NamedThing thiomorpholine-3-carboxylate monarch-merged.owl owl:Class CHEBI:15364 biolink:NamedThing propynoate monarch-merged.owl owl:Class CHEBI:15740 biolink:NamedThing formate A monocarboxylic acid anion that is the conjugate base of formic acid. Induces severe metabolic acidosis and ocular injury in human subjects. monarch-merged.owl formylate|aminate|formiate|formate|hydrogen carboxylate|HCO2 anion|methanoate|formic acid, ion(1-) -1 CHO2 InChI=1S/CH2O2/c2-1-3/h1H,(H,2,3)/p-1 BDAGIHXWWSANSR-UHFFFAOYSA-M 45.01744 44.99820 [H]C([O-])=O Wikipedia:Formate|Gmelin:1006|Beilstein:1901205|Reaxys:1901205|PMID:17190852|UM-BBD_compID:c0106|CAS:71-47-6|PMID:3946945|MetaCyc:FORMATE|HMDB:HMDB0000142|KEGG:C00058 CHEBI:24081|CHEBI:14276 chebi_ontology owl:Class CHEBI:157625 biolink:NamedThing alpha-D-mannopyranuronate monarch-merged.owl owl:Class CHEBI:16146 biolink:NamedThing maleamate monarch-merged.owl owl:Class CHEBI:16237 biolink:NamedThing 4-chlorophenylacetate monarch-merged.owl owl:Class CHEBI:16454 biolink:NamedThing pantothenate monarch-merged.owl owl:Class CHEBI:16630 biolink:NamedThing 3-dehydroshikimate monarch-merged.owl owl:Class CHEBI:166829 biolink:NamedThing ochratoxin A(1-) monarch-merged.owl owl:Class CHEBI:16863 biolink:NamedThing 6-phospho-D-gluconate A monocarboxylic acid anion resulting from the removal of a proton from the carboxy group of 6-phospho-D-gluconic acid. monarch-merged.owl 6-O-phosphono-D-gluconate -1 C6H12O10P InChI=1S/C6H13O10P/c7-2(1-16-17(13,14)15)3(8)4(9)5(10)6(11)12/h2-5,7-10H,1H2,(H,11,12)(H2,13,14,15)/p-1/t2-,3-,4+,5-/m1/s1 BIRSGZKFKXLSJQ-SQOUGZDYSA-M 275.12724 275.01736 O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)[C@@H](O)C([O-])=O Reaxys:4517000 CHEBI:12232 chebi_ontology owl:Class CHEBI:16987 biolink:NamedThing 1-piperideine-6-carboxylate A monocarboxylic acid anion resulting from the removal of a proton from the carboxy group of 1-piperideine-6-carboxylic acid. monarch-merged.owl 1-piperideine-6-carboxylate|2,3,4,5-tetrahydropyridine-2-carboxylate|delta-1-Piperideine-6-carboxylate -1 C6H8NO2 InChI=1S/C6H9NO2/c8-6(9)5-3-1-2-4-7-5/h4-5H,1-3H2,(H,8,9)/p-1 CSDPVAKVEWETFG-UHFFFAOYSA-M 126.13326 126.05605 [O-]C(=O)C1CCCC=N1 CHEBI:19295|CHEBI:11409 chebi_ontology owl:Class CHEBI:17271 biolink:NamedThing 3-phosphonatopyruvate(3-) monarch-merged.owl owl:Class CHEBI:17318 biolink:NamedThing N-(3,4-dichlorophenyl)malonamate monarch-merged.owl owl:Class CHEBI:17573 biolink:NamedThing glycyrrhetinate monarch-merged.owl owl:Class CHEBI:18021 biolink:NamedThing phosphoenolpyruvate monarch-merged.owl owl:Class CHEBI:18052 biolink:NamedThing loganate monarch-merged.owl owl:Class CHEBI:18071 biolink:NamedThing (methylthio)acetate monarch-merged.owl owl:Class CHEBI:18401 biolink:NamedThing phenylacetate A monocarboxylic acid anion that is the conjugate base of phenylacetic acid. monarch-merged.owl 2-phenylacetate|phenylacetic acid anion|phenylacetate anion|2-phenylethanoate|phenylacetate|phenylacetate(1-) -1 C8H7O2 InChI=1S/C8H8O2/c9-8(10)6-7-4-2-1-3-5-7/h1-5H,6H2,(H,9,10)/p-1 WLJVXDMOQOGPHL-UHFFFAOYSA-M 135.13998 135.04515 [O-]C(=O)Cc1ccccc1 Gmelin:327522|Beilstein:3539899|Reaxys:3539899|MetaCyc:PHENYLACETATE|UM-BBD_compID:c0211 CHEBI:14779|CHEBI:25975 chebi_ontology owl:Class CHEBI:22299 biolink:NamedThing aldonate A monocarboxylic acid anion resulting from the deprotonation of the carboxy group of an aldonic acid. monarch-merged.owl aldonates|aldonate chebi_ontology owl:Class CHEBI:22718 biolink:NamedThing benzoates A monocarboxylic acid anion obtained by deprotonation of the carboxy group of any benzoic acid. monarch-merged.owl benzoate anion chebi_ontology owl:Class CHEBI:23151 biolink:NamedThing chlorophenoxyacetate anion monarch-merged.owl owl:Class CHEBI:25218 biolink:NamedThing methacrylate monarch-merged.owl owl:Class CHEBI:25482 biolink:NamedThing naphthoate monarch-merged.owl owl:Class CHEBI:26008 biolink:NamedThing phenylpyruvate monarch-merged.owl owl:Class CHEBI:26452 biolink:NamedThing pyrrolecarboxylate monarch-merged.owl owl:Class CHEBI:26457 biolink:NamedThing 1-pyrrolinecarboxylate monarch-merged.owl owl:Class CHEBI:27247 biolink:NamedThing urocanate An monocarboxylic acid anion that is the conjugate base of urocanic acid. monarch-merged.owl 3-(1H-imidazol-4-yl)prop-2-enoate|urocanate -1 C6H5N2O2 InChI=1S/C6H6N2O2/c9-6(10)2-1-5-3-7-4-8-5/h1-4H,(H,7,8)(H,9,10)/p-1 LOIYMIARKYCTBW-UHFFFAOYSA-M 137.11618 137.03565 [H]C(=C([H])c1c[nH]cn1)C([O-])=O ECMDB:ECMDB21396|KEGG:C00785|MetaCyc:UROCANATE chebi_ontology owl:Class CHEBI:27804 biolink:NamedThing cyclohexanecarboxylate monarch-merged.owl owl:Class CHEBI:28547 biolink:NamedThing D-glucuronate 1-phosphate monarch-merged.owl owl:Class CHEBI:28868 biolink:NamedThing fatty acid anion The conjugate base of a fatty acid, arising from deprotonation of the carboxylic acid group of the corresponding fatty acid. monarch-merged.owl Fettsaeureanionen|Fatty acid anion|Fettsaeureanion|anion de l'acide gras|acidos grasos anionicos|Alkanate|acido graso anionico|a fatty acid|fatty acid anions -1 CO2R 44.00950 43.98983 [O-]C([*])=O PMID:18628202|KEGG:C02403 CHEBI:24022|CHEBI:13634|CHEBI:4985 chebi_ontology owl:Class CHEBI:29749 biolink:NamedThing ferulate monarch-merged.owl owl:Class CHEBI:30066 biolink:NamedThing thioglycolate(1-) monarch-merged.owl owl:Class CHEBI:30089 biolink:NamedThing acetate A monocarboxylic acid anion resulting from the removal of a proton from the carboxy group of acetic acid. monarch-merged.owl ethanoate|CH3-COO(-)|acetate|MeCO2 anion|ACETATE ION|Ethanoat|acetic acid, ion(1-)|Azetat -1 C2H3O2 InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)/p-1 QTBSBXVTEAMEQO-UHFFFAOYSA-M 59.04402 59.01385 CC([O-])=O PMID:22211106|Gmelin:1379|UM-BBD_compID:c0050|Reaxys:1901470|PMID:17190852|PMID:22371380|Beilstein:1901470|DrugBank:DB03166|KEGG:C00033|Wikipedia:Acetate|CAS:71-50-1|PDBeChem:ACT|MetaCyc:ACET CHEBI:22165|CHEBI:13704|CHEBI:40480 chebi_ontology owl:Class CHEBI:30867 biolink:NamedThing dihydroorotate monarch-merged.owl owl:Class CHEBI:33549 biolink:NamedThing uronate monarch-merged.owl owl:Class CHEBI:33805 biolink:NamedThing 2-amino-2-deoxy-D-gluconate monarch-merged.owl owl:Class CHEBI:35680 biolink:NamedThing abietate monarch-merged.owl owl:Class CHEBI:35902 biolink:NamedThing oxo monocarboxylic acid anion monarch-merged.owl oxo monocarboxylic acid anions CHEBI:35901|CHEBI:35178 chebi_ontology owl:Class CHEBI:35908 biolink:NamedThing glutaramate monarch-merged.owl owl:Class CHEBI:36056 biolink:NamedThing furancarboxylate monarch-merged.owl owl:Class CHEBI:36091 biolink:NamedThing cinnamates monarch-merged.owl owl:Class CHEBI:36109 biolink:NamedThing piperidinecarboxylate monarch-merged.owl piperidinecarboxylates chebi_ontology owl:Class CHEBI:36125 biolink:NamedThing cyclitol carboxylic acid anion monarch-merged.owl owl:Class CHEBI:36126 biolink:NamedThing cyclohexenecarboxylate monarch-merged.owl owl:Class CHEBI:36128 biolink:NamedThing cyclopropanecarboxylate monarch-merged.owl owl:Class CHEBI:36235 biolink:NamedThing bile acid anion monarch-merged.owl owl:Class CHEBI:36487 biolink:NamedThing 13-(beta-D-glucosyloxy)docosanoate monarch-merged.owl owl:Class CHEBI:37080 biolink:NamedThing acrylate monarch-merged.owl owl:Class CHEBI:37322 biolink:NamedThing penta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:38181 biolink:NamedThing pyridinemonocarboxylate A monocarboxylic acid anion resulting from the removal of a proton from the carboxy group of a pyridinemonocarboxylic acid. A 'closed class'. monarch-merged.owl pyridinemonocarboxylates chebi_ontology owl:Class CHEBI:38316 biolink:NamedThing pyrimidinecarboxylate anion monarch-merged.owl pyrimidinecarboxylate anions chebi_ontology owl:Class CHEBI:38466 biolink:NamedThing imidazolyl carboxylic acid anion monarch-merged.owl owl:Class CHEBI:38468 biolink:NamedThing indol-3-yl carboxylic acid anion monarch-merged.owl indol-3-yl carboxylic acid anions chebi_ontology owl:Class CHEBI:38609 biolink:NamedThing indolecarboxylate monarch-merged.owl owl:Class CHEBI:38668 biolink:NamedThing purinecarboxylate monarch-merged.owl owl:Class CHEBI:38674 biolink:NamedThing chromenemonocarboxylate monarch-merged.owl owl:Class CHEBI:38773 biolink:NamedThing quinolinemonocarboxylate monarch-merged.owl owl:Class CHEBI:38796 biolink:NamedThing pteroates monarch-merged.owl chebi_ontology owl:Class CHEBI:38846 biolink:NamedThing phenoxyacetate monarch-merged.owl owl:Class CHEBI:46951 biolink:NamedThing 3-(2,3-dihydroxyphenyl)propanoate monarch-merged.owl owl:Class CHEBI:46957 biolink:NamedThing 3-(2-hydroxyphenyl)propanoate monarch-merged.owl owl:Class CHEBI:47811 biolink:NamedThing penamcarboxylate monarch-merged.owl penamcarboxylates owl:Class CHEBI:47869 biolink:NamedThing thioglycolate(2-) monarch-merged.owl owl:Class CHEBI:47893 biolink:NamedThing 4-O-beta-D-glucosyl-4-coumarate monarch-merged.owl owl:Class CHEBI:487869 biolink:NamedThing clavulanate monarch-merged.owl owl:Class CHEBI:48999 biolink:NamedThing 4-hydroxyphenylacetate A monocarboxylic acid anion that is obtained by removal of a proton from the carboxylic acid group of 4-hydroxyphenylacetic acid. monarch-merged.owl (4-hydroxyphenyl)acetate|4-hydroxybenzeneacetate|(p-hydroxyphenyl)acetate|2-(4-hydroxyphenyl)ethanoate|4-hydroxyphenylacetate -1 C8H7O3 InChI=1S/C8H8O3/c9-7-3-1-6(2-4-7)5-8(10)11/h1-4,9H,5H2,(H,10,11)/p-1 XQXPVVBIMDBYFF-UHFFFAOYSA-M 151.13938 151.04007 Oc1ccc(CC([O-])=O)cc1 MetaCyc:4-HYDROXYPHENYLACETATE|Reaxys:3905591 chebi_ontology owl:Class CHEBI:51057 biolink:NamedThing 3-phenylpropionate monarch-merged.owl owl:Class CHEBI:51356 biolink:NamedThing penicillinate anion Any anion formed by loss of a proton from the carboxy group of a penicillin. monarch-merged.owl penicillin anion|penicillin|penicillin anions owl:Class CHEBI:53794 biolink:NamedThing (4-hydroxy-3-nitrophenyl)acetate monarch-merged.owl owl:Class CHEBI:55331 biolink:NamedThing 16-feruloyloxypalmitate monarch-merged.owl owl:Class CHEBI:57255 biolink:NamedThing 5-(2-carboxylatoethyl)-4-oxo-4,5-dihydro-1H-imidazol-5-ide monarch-merged.owl owl:Class CHEBI:57263 biolink:NamedThing 4-carboxylatomethylenebut-2-en-4-olide monarch-merged.owl owl:Class CHEBI:57274 biolink:NamedThing 3,5-dibromo-4-oxidobenzoate(2-) monarch-merged.owl owl:Class CHEBI:57277 biolink:NamedThing 3-(3-hydroxyphenyl)propanoate monarch-merged.owl owl:Class CHEBI:57297 biolink:NamedThing ent-kaur-16-en-19-oate monarch-merged.owl owl:Class CHEBI:57298 biolink:NamedThing ent-7alpha-hydroxykaur-16-en-19-oate monarch-merged.owl owl:Class CHEBI:57421 biolink:NamedThing (2E,6E,10R,11S)-10,11-epoxy-3,7,11-trimethyltrideca-2,6-dienoate monarch-merged.owl owl:Class CHEBI:57445 biolink:NamedThing thromboxane A2(1-) monarch-merged.owl owl:Class CHEBI:57463 biolink:NamedThing leukotriene A4(1-) monarch-merged.owl owl:Class CHEBI:57487 biolink:NamedThing pyruvate oxime monarch-merged.owl owl:Class CHEBI:57488 biolink:NamedThing hydrogen phosphonatoacetate(2-) monarch-merged.owl owl:Class CHEBI:57490 biolink:NamedThing N-carbamoylsarcosinate monarch-merged.owl owl:Class CHEBI:57528 biolink:NamedThing 5-hydroxy-6-methylpyridine-3-carboxylate monarch-merged.owl owl:Class CHEBI:57529 biolink:NamedThing 17alpha-estradiol 3-glucosiduronate monarch-merged.owl owl:Class CHEBI:57586 biolink:NamedThing biotinate Conjugate base of biotin arising from deprotonation of the carboxy group. monarch-merged.owl biotin|5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate|biotin anion owl:Class CHEBI:57605 biolink:NamedThing adenin-9-yl riburonosate(1-) monarch-merged.owl owl:Class CHEBI:57640 biolink:NamedThing 1,6-dihydroxy-2-methylcyclohexa-2,4-diene-1-carboxylate monarch-merged.owl owl:Class CHEBI:57644 biolink:NamedThing chlorogenate monarch-merged.owl owl:Class CHEBI:57646 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->4)-alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide anion monarch-merged.owl owl:Class CHEBI:57664 biolink:NamedThing 6-hydroxynicotinate(1-) monarch-merged.owl owl:Class CHEBI:57681 biolink:NamedThing cis-2-chloro-4-carboxylatomethylenebut-2-en-1,4-olide monarch-merged.owl owl:Class CHEBI:57740 biolink:NamedThing L-5-carboxylatomethylhydantoin(1-) monarch-merged.owl owl:Class CHEBI:57832 biolink:NamedThing 1,2-diacyl-3-[3-(alpha-D-N-acetylneuraminyl)-beta-D-galactosyl]-sn-glycerol(1-) monarch-merged.owl owl:Class CHEBI:57850 biolink:NamedThing 3-O-(4-deoxy-alpha-L-threo-hex-4-enopyranosyluronate)-D-galactosamine(1-) monarch-merged.owl owl:Class CHEBI:57855 biolink:NamedThing protochlorophyllide(1-) monarch-merged.owl owl:Class CHEBI:57861 biolink:NamedThing dethiobiotin(1-) monarch-merged.owl owl:Class CHEBI:57878 biolink:NamedThing 2-acetamido-2-deoxy-3-O-(4-deoxy-alpha-L-threo-hex-4-enopyranosyluronate)-6-O-sulfonato-D-galactopyranose(2-) monarch-merged.owl owl:Class CHEBI:57883 biolink:NamedThing 4-carboxylatomethyl-3-methylbut-2-en-1,4-olide(1-) monarch-merged.owl owl:Class CHEBI:57888 biolink:NamedThing 4-carboxylatomethyl-4-methylbut-2-en-1,4-olide(1-) monarch-merged.owl owl:Class CHEBI:57891 biolink:NamedThing trans-2-chloro-4-carboxylatomethylenebut-2-en-1,4-olide(1-) monarch-merged.owl owl:Class CHEBI:57892 biolink:NamedThing 3-(dioxido-lambda(5)-azanylidene)propanoate(2-) monarch-merged.owl owl:Class CHEBI:57969 biolink:NamedThing imidazol-4-ylacetate monarch-merged.owl owl:Class CHEBI:58008 biolink:NamedThing 2-carboxylato-D-arabinitol(1-) monarch-merged.owl owl:Class CHEBI:58024 biolink:NamedThing deoxylimonoate monarch-merged.owl owl:Class CHEBI:58038 biolink:NamedThing Photinus luciferin(1-) monarch-merged.owl owl:Class CHEBI:58062 biolink:NamedThing rosmarinate monarch-merged.owl owl:Class CHEBI:58081 biolink:NamedThing dTDP-D-galacturonate(3-) monarch-merged.owl owl:Class CHEBI:58109 biolink:NamedThing (2-chloro-5-oxo-2,5-dihydro-2-furyl)acetate monarch-merged.owl owl:Class CHEBI:58118 biolink:NamedThing L-rhamnonate monarch-merged.owl owl:Class CHEBI:58143 biolink:NamedThing 5-dehydro-D-gluconate monarch-merged.owl owl:Class CHEBI:58150 biolink:NamedThing 3-D-glucuronosyl-N(2),6-disulfonato-beta-D-glucosamine(3-) monarch-merged.owl owl:Class CHEBI:58205 biolink:NamedThing 3-nitroacrylate monarch-merged.owl owl:Class CHEBI:58238 biolink:NamedThing 4-methoxy-1-methyl-2-oxo-1,2-dihydropyridine-3-carboxylate monarch-merged.owl owl:Class CHEBI:58308 biolink:NamedThing 5-amino-4-chloro-2-(2-oxidomuconoyl)pyridazin-3(2H)-one(2-) monarch-merged.owl owl:Class CHEBI:58322 biolink:NamedThing 3-mercapto-2-mercaptomethylpropanoate(1-) monarch-merged.owl owl:Class CHEBI:58363 biolink:NamedThing oxamate monarch-merged.owl owl:Class CHEBI:58372 biolink:NamedThing 5-oxo-2,5-dihydro-2-furylacetate monarch-merged.owl owl:Class CHEBI:58385 biolink:NamedThing luteolin 7-O-beta-D-glucosiduronate monarch-merged.owl owl:Class CHEBI:58425 biolink:NamedThing 5-oxo-4,5-dihydro-2-furylacetate monarch-merged.owl owl:Class CHEBI:58440 biolink:NamedThing quinoline-4-carboxylate monarch-merged.owl owl:Class CHEBI:58465 biolink:NamedThing dermatan sulfate polyanion The conjugate base of dermatan sulfate, obtained by deprotonation of carboxy and sulfate groups. monarch-merged.owl dermatan 4'-sulfate H2O.(C14H219NO14S)n chebi_ontology owl:Class CHEBI:58480 biolink:NamedThing N-[(R)-pantothenoyl]-L-cysteinate monarch-merged.owl owl:Class CHEBI:58517 biolink:NamedThing 3,4-dehydrothiomorpholine-3-carboxylate monarch-merged.owl owl:Class CHEBI:58565 biolink:NamedThing 5-hydroxyimidazole-4-acetate monarch-merged.owl owl:Class CHEBI:58610 biolink:NamedThing nocardicin E(1-) monarch-merged.owl owl:Class CHEBI:58621 biolink:NamedThing dehydroabietate monarch-merged.owl owl:Class CHEBI:58638 biolink:NamedThing 4'''-demalonylsalvianin(1-) monarch-merged.owl owl:Class CHEBI:58639 biolink:NamedThing 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate monarch-merged.owl owl:Class CHEBI:58659 biolink:NamedThing 8(R)-HPODE(1-) monarch-merged.owl owl:Class CHEBI:58665 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide(1-) monarch-merged.owl owl:Class CHEBI:58686 biolink:NamedThing chlorophyllide b(1-) monarch-merged.owl owl:Class CHEBI:58690 biolink:NamedThing 1,6-anhydro-N-acetyl-beta-muramate monarch-merged.owl owl:Class CHEBI:58705 biolink:NamedThing N-acetyl-beta-neuraminate monarch-merged.owl owl:Class CHEBI:58715 biolink:NamedThing calcitroate monarch-merged.owl owl:Class CHEBI:58720 biolink:NamedThing D-glucopyranuronate monarch-merged.owl owl:Class CHEBI:58737 biolink:NamedThing (R)-2-O-sulfonatolactate(2-) monarch-merged.owl owl:Class CHEBI:58738 biolink:NamedThing (R)-3-sulfolactate monarch-merged.owl owl:Class CHEBI:58744 biolink:NamedThing 3-(3,4-dihydroxyphenyl)propanoate monarch-merged.owl owl:Class CHEBI:58770 biolink:NamedThing N-acetyl-alpha-neuraminate monarch-merged.owl owl:Class CHEBI:58780 biolink:NamedThing 2,6-dihydroxynicotinate monarch-merged.owl owl:Class CHEBI:58824 biolink:NamedThing sulfonatoacetate monarch-merged.owl owl:Class CHEBI:58852 biolink:NamedThing 5-deoxy-D-glucuronate monarch-merged.owl owl:Class CHEBI:58878 biolink:NamedThing 2-oxo-1,2-dihydroquinoline-4-carboxylate monarch-merged.owl owl:Class CHEBI:58879 biolink:NamedThing N-acetylphosphinothricin(2-) monarch-merged.owl owl:Class CHEBI:58911 biolink:NamedThing delphinidin-5-olate 3-O-(6''-O-carboxylatoacetyl)-beta-D-glucoside(1-) monarch-merged.owl owl:Class CHEBI:58912 biolink:NamedThing ternatin C5(2-) monarch-merged.owl owl:Class CHEBI:58913 biolink:NamedThing delphinidin-5-olate 3-O-(6''-O-carboxylatoacetyl)-beta-D-glucoside-3'-O-beta-D-glucoside(1-) monarch-merged.owl owl:Class CHEBI:58924 biolink:NamedThing isopimarate monarch-merged.owl owl:Class CHEBI:59531 biolink:NamedThing F420-0(2-) monarch-merged.owl owl:Class CHEBI:59887 biolink:NamedThing 2-imino-3-(7-chloroindol-3-yl)propionate(1-) monarch-merged.owl owl:Class CHEBI:59891 biolink:NamedThing ureidoacrylate monarch-merged.owl owl:Class CHEBI:59894 biolink:NamedThing (Z)-3-aminoacrylate monarch-merged.owl owl:Class CHEBI:59899 biolink:NamedThing 3-nitropropanoate monarch-merged.owl owl:Class CHEBI:59911 biolink:NamedThing N-formylmaleamate monarch-merged.owl owl:Class CHEBI:60040 biolink:NamedThing alpha-N-acetylneuraminyl-(2->6)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosamine(1-) monarch-merged.owl owl:Class CHEBI:60065 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-N-acylsphingosine(1-) A carbohydrate acid derivative anion that is the conjugate base of alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide arising from deprotonation of the neuraminosyl carboxy group; major species at pH 7.3. monarch-merged.owl alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide|ganglioside GM3 (d18:1(4E)) -1 C42H72N2O21R 941.02190 940.46276 CCCCCCCCCCCCC\C=C\[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@]3(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O3)[C@H](O)[C@H](O)CO)C([O-])=O)[C@H]2O)[C@H](O)[C@H]1O)NC([*])=O chebi_ontology owl:Class CHEBI:60079 biolink:NamedThing alpha-N-acetylneuraminyl-(2->6)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide(1-) monarch-merged.owl owl:Class CHEBI:60087 biolink:NamedThing 3-(cis-5,6-dihydroxycyclohexa-1,3-dienyl)propanoate monarch-merged.owl owl:Class CHEBI:60302 biolink:NamedThing L-thyroxine(1-) monarch-merged.owl owl:Class CHEBI:60308 biolink:NamedThing 3,3',5-triiodo-L-thyroninate The anion resulting from the removal of the proton from the carboxylic acid group of 3,3',5-triiodo-L-thyronine. monarch-merged.owl 3,3',5-triiodo-L-thyronine anion|3,3',5-triiodo-L-thyronine(1-)|(2S)-2-amino-3-[4-(4-hydroxy-3-iodophenoxy)-3,5-diiodophenyl]propanoate|liothyronine(1-)|(2S)-2-amino-3-[4-(4-hydroxy-3-iodophenoxy)-3,5-diiodophenyl]propionate|liothyronine anion -1 C15H11I3NO4 InChI=1S/C15H12I3NO4/c16-9-6-8(1-2-13(9)20)23-14-10(17)3-7(4-11(14)18)5-12(19)15(21)22/h1-4,6,12,20H,5,19H2,(H,21,22)/p-1/t12-/m0/s1 AUYYCJSJGJYCDS-LBPRGKRZSA-M 649.96560 649.78277 N[C@@H](Cc1cc(I)c(Oc2ccc(O)c(I)c2)c(I)c1)C([O-])=O chebi_ontology owl:Class CHEBI:60489 biolink:NamedThing magnesium 13(1)-hydroxyprotoporphyrin 13-monomethyl ester(1-) monarch-merged.owl owl:Class CHEBI:60490 biolink:NamedThing magnesium 13(1)-oxoprotoporphyrin 13-monomethyl ester(1-) monarch-merged.owl owl:Class CHEBI:60491 biolink:NamedThing magnesium protoporphyrin 13-monomethyl ester(1-) monarch-merged.owl owl:Class CHEBI:60838 biolink:NamedThing streptothricin F acid (pH 7.3) monarch-merged.owl owl:Class CHEBI:60839 biolink:NamedThing streptothricin D acid (pH 7.3) monarch-merged.owl owl:Class CHEBI:60874 biolink:NamedThing phenylacetylglycine(1-) monarch-merged.owl owl:Class CHEBI:60955 biolink:NamedThing 9(S)-HPODE(1-) monarch-merged.owl owl:Class CHEBI:61032 biolink:NamedThing 5,6,7,8-tetrahydropterin-6-carboxylate monarch-merged.owl owl:Class CHEBI:61036 biolink:NamedThing 7-carboxylato-7-deazaguanine monarch-merged.owl owl:Class CHEBI:61131 biolink:NamedThing N-hydroxy-L-isoleucinate monarch-merged.owl owl:Class CHEBI:61133 biolink:NamedThing N,N-dihydroxy-L-isoleucinate monarch-merged.owl owl:Class CHEBI:61140 biolink:NamedThing N-hydroxy-L-valinate monarch-merged.owl owl:Class CHEBI:61142 biolink:NamedThing N,N-dihydroxy-L-valinate monarch-merged.owl owl:Class CHEBI:61283 biolink:NamedThing baicalin(1-) monarch-merged.owl owl:Class CHEBI:61284 biolink:NamedThing scutellarin(1-) monarch-merged.owl owl:Class CHEBI:61285 biolink:NamedThing wogonin 7-O-beta-D-glucuronate monarch-merged.owl owl:Class CHEBI:61287 biolink:NamedThing (S)-2-O-sulfonatolactate(2-) monarch-merged.owl owl:Class CHEBI:61301 biolink:NamedThing germacra-1(10),4,11(13)-trien-12-oate monarch-merged.owl owl:Class CHEBI:61674 biolink:NamedThing oroxylin A 7-O-beta-D-glucuronate monarch-merged.owl owl:Class CHEBI:62046 biolink:NamedThing biotinate sulfoxide(1-) monarch-merged.owl owl:Class CHEBI:62069 biolink:NamedThing phaseic acid anion monarch-merged.owl owl:Class CHEBI:62070 biolink:NamedThing nalidixic acid anion monarch-merged.owl owl:Class CHEBI:62071 biolink:NamedThing 2-cis-abscisate monarch-merged.owl owl:Class CHEBI:62072 biolink:NamedThing naptalamate monarch-merged.owl owl:Class CHEBI:62074 biolink:NamedThing 3-chloroacrylate monarch-merged.owl owl:Class CHEBI:62211 biolink:NamedThing 3-butynoate monarch-merged.owl owl:Class CHEBI:62222 biolink:NamedThing 4-methyl-3-oxopentanoate monarch-merged.owl owl:Class CHEBI:62248 biolink:NamedThing phenazine-1-carboxylate monarch-merged.owl owl:Class CHEBI:62423 biolink:NamedThing (2-hydroxyphenyl)acetate monarch-merged.owl owl:Class CHEBI:62432 biolink:NamedThing abscisates monarch-merged.owl owl:Class CHEBI:62441 biolink:NamedThing soyasapogenol B 3-O-beta-glucuronate monarch-merged.owl owl:Class CHEBI:62443 biolink:NamedThing soyasapogenol A 3-O-beta-glucuronate monarch-merged.owl owl:Class CHEBI:62446 biolink:NamedThing soyasapogenol E 3-O-beta-glucuronate monarch-merged.owl owl:Class CHEBI:62448 biolink:NamedThing indole-3-carboxylate monarch-merged.owl owl:Class CHEBI:62478 biolink:NamedThing 2-O-(4-deoxy-beta-L-threo-hex-4-enopyranuronosyl)-alpha-L-rhamnopyranose(1-) monarch-merged.owl owl:Class CHEBI:62531 biolink:NamedThing (1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylate monarch-merged.owl owl:Class CHEBI:62641 biolink:NamedThing perillate monarch-merged.owl owl:Class CHEBI:62911 biolink:NamedThing soyasaponin III(1-) monarch-merged.owl owl:Class CHEBI:62916 biolink:NamedThing soyasaponin I(1-) monarch-merged.owl owl:Class CHEBI:62932 biolink:NamedThing mycophenolate monarch-merged.owl owl:Class CHEBI:63069 biolink:NamedThing neurosporaxanthin(1-) monarch-merged.owl owl:Class CHEBI:63217 biolink:NamedThing 5(S),8(R)-DiHODE(1-) monarch-merged.owl owl:Class CHEBI:63263 biolink:NamedThing beta-D-4-deoxy-Delta(4)-GlcpA-(1->3)-beta-D-GalpNAc(1-) monarch-merged.owl owl:Class CHEBI:63274 biolink:NamedThing 4-deoxy-Delta(4)-beta-D-GlcpA2S-(1->3)-beta-D-GalpNAc(2-) monarch-merged.owl owl:Class CHEBI:63278 biolink:NamedThing 5-dehydro-4-deoxy-2-O-sulfo-D-glucuronic acid(2-) monarch-merged.owl owl:Class CHEBI:63280 biolink:NamedThing beta-D-4-deoxy-Delta(4)-GlcpA-(1->3)-beta-D-GlcpNAc(1-) monarch-merged.owl owl:Class CHEBI:63282 biolink:NamedThing pseudaminate monarch-merged.owl owl:Class CHEBI:63323 biolink:NamedThing 9(R)-HPODE(1-) monarch-merged.owl owl:Class CHEBI:63469 biolink:NamedThing 3-hydroxy-3-phenylpropionate monarch-merged.owl owl:Class CHEBI:63474 biolink:NamedThing arsonoacetic acid anion monarch-merged.owl owl:Class CHEBI:63475 biolink:NamedThing ectoinate monarch-merged.owl owl:Class CHEBI:63476 biolink:NamedThing 4-carboxylato-4'-sulfonatoazobenzene monarch-merged.owl owl:Class CHEBI:63524 biolink:NamedThing 5-hydroxyectoinate monarch-merged.owl owl:Class CHEBI:63659 biolink:NamedThing 9beta-pimara-7,15-dien-19-oate monarch-merged.owl owl:Class CHEBI:63660 biolink:NamedThing pravastatin(1-) monarch-merged.owl owl:Class CHEBI:63693 biolink:NamedThing (2Z,4Z)-2-hydroxyhexa-2,4-dienoate monarch-merged.owl owl:Class CHEBI:63894 biolink:NamedThing pivalate monarch-merged.owl owl:Class CHEBI:64254 biolink:NamedThing 1,4-dihydroxy-6-naphthoate monarch-merged.owl owl:Class CHEBI:64782 biolink:NamedThing (+)-artemisinate monarch-merged.owl owl:Class CHEBI:66924 biolink:NamedThing creatinate A monocarboxylic acid anion that is the conjugate base of creatine, obtained by deprotonation of the carboxy group. monarch-merged.owl (N-methylcarbamimidamido)acetate|{[imino(amino)methyl](methyl)amino}acetate|N-[amino(imino)methyl]-N-methylglycinate -1 C4H8N3O2 InChI=1S/C4H9N3O2/c1-7(4(5)6)2-3(8)9/h2H2,1H3,(H3,5,6)(H,8,9)/p-1 CVSVTCORWBXHQV-UHFFFAOYSA-M 130.12520 130.06220 CN(CC([O-])=O)C(N)=N chebi_ontology owl:Class CHEBI:66950 biolink:NamedThing olivetolate monarch-merged.owl owl:Class CHEBI:68650 biolink:NamedThing 1-deoxypentalenate monarch-merged.owl owl:Class CHEBI:70787 biolink:NamedThing pentalenolactone D(1-) monarch-merged.owl owl:Class CHEBI:70788 biolink:NamedThing pentalenolactone E(1-) monarch-merged.owl owl:Class CHEBI:70789 biolink:NamedThing pentalenolactone F(1-) monarch-merged.owl owl:Class CHEBI:70790 biolink:NamedThing pentalenolactone(1-) monarch-merged.owl owl:Class CHEBI:70859 biolink:NamedThing neopentalenolactone D(1-) monarch-merged.owl owl:Class CHEBI:71048 biolink:NamedThing (S)-dihydrocamalexate monarch-merged.owl owl:Class CHEBI:71190 biolink:NamedThing 4-methoxy-4-oxo-3-phenylbutanoate monarch-merged.owl owl:Class CHEBI:71237 biolink:NamedThing thiophene-2-carboxylate monarch-merged.owl owl:Class CHEBI:71266 biolink:NamedThing pyrazine-2-carboxylate monarch-merged.owl owl:Class CHEBI:71332 biolink:NamedThing (3-nitro-4-oxidophenyl)acetate monarch-merged.owl owl:Class CHEBI:71402 biolink:NamedThing 3-phosphonatopyruvate(2-) monarch-merged.owl owl:Class CHEBI:71944 biolink:NamedThing aldehydic acid anion monarch-merged.owl owl:Class CHEBI:72991 biolink:NamedThing dihydrourocanate monarch-merged.owl owl:Class CHEBI:73673 biolink:NamedThing (S)-alpha-hydroxyglutarate-gamma-lactone monarch-merged.owl owl:Class CHEBI:73934 biolink:NamedThing (S)-2-chloropropanoate monarch-merged.owl owl:Class CHEBI:73935 biolink:NamedThing 2-chloroacrylate monarch-merged.owl owl:Class CHEBI:73939 biolink:NamedThing (3S,5S)-carbapenam-3-carboxylate monarch-merged.owl owl:Class CHEBI:73943 biolink:NamedThing (5R)-carbapenem-3-carboxylate monarch-merged.owl owl:Class CHEBI:74406 biolink:NamedThing 3-vinylbacteriochlorophyllide a(1-) monarch-merged.owl owl:Class CHEBI:74414 biolink:NamedThing 3-ureidoisobutyrate(1-) monarch-merged.owl owl:Class CHEBI:75284 biolink:NamedThing (R)-2-(4-chloro-2-methylphenoxy)propanoate monarch-merged.owl owl:Class CHEBI:75285 biolink:NamedThing (S)-2-(4-chloro-2-methylphenoxy)propanoate monarch-merged.owl owl:Class CHEBI:75287 biolink:NamedThing (S)-dichlorprop(1-) monarch-merged.owl owl:Class CHEBI:75288 biolink:NamedThing (R)-dichlorprop(1-) monarch-merged.owl owl:Class CHEBI:75348 biolink:NamedThing (8E,10S,12Z,15Z)-10-hydroperoxyoctadec-8,12,15-trienoate monarch-merged.owl owl:Class CHEBI:75525 biolink:NamedThing D-galactopyranuronate monarch-merged.owl owl:Class CHEBI:76844 biolink:NamedThing 7-deoxyloganate monarch-merged.owl owl:Class CHEBI:76846 biolink:NamedThing 7-deoxyloganetate monarch-merged.owl owl:Class CHEBI:77450 biolink:NamedThing dicarboxylic acid monoamide(1-) A monocarboxylic acid anion obtained by deprotonation of the carboxy group of any dicarboxylic acid monoamide; major species at pH 7.3. monarch-merged.owl a monoamide of a dicarboxylate -1 C2H2NO3R 88.042 88.00347 NC(=O)[*]C([O-])=O MetaCyc:DICARBOXYLIC-ACID-MONOAMIDES chebi_ontology owl:Class CHEBI:77456 biolink:NamedThing 2-iminopropanoate monarch-merged.owl owl:Class CHEBI:77667 biolink:NamedThing 2,4-divinyl protochlorophyllide a(1-) monarch-merged.owl owl:Class CHEBI:77670 biolink:NamedThing primary fluorescent chlorophyll catabolite(1-) monarch-merged.owl owl:Class CHEBI:77885 biolink:NamedThing nocardicin E(2-) monarch-merged.owl owl:Class CHEBI:77893 biolink:NamedThing 3-(4-oxo-4,5-dihydro-1H-imidazol-5-yl)propanoate(1-) monarch-merged.owl owl:Class CHEBI:78207 biolink:NamedThing 1-palmitoyl-2-azelaoyl-sn-glycero-3-phosphocholine(1-) monarch-merged.owl owl:Class CHEBI:78236 biolink:NamedThing N-acetyl-L-cysteinate monarch-merged.owl owl:Class CHEBI:78312 biolink:NamedThing 5,10-dihydrophenazine-1-carboxylate monarch-merged.owl owl:Class CHEBI:78313 biolink:NamedThing 5,10-dihydro-9-dimethylallylphenazine 1-carboxylate monarch-merged.owl owl:Class CHEBI:78369 biolink:NamedThing 1-hexadecyl-2-succinyl-sn-glycero-3-phosphocholine(1-) monarch-merged.owl owl:Class CHEBI:78371 biolink:NamedThing 1-hexadecyl-2-glutaryl-sn-glycero-3-phosphocholine(1-) monarch-merged.owl owl:Class CHEBI:78625 biolink:NamedThing clavaldehyde(1-) monarch-merged.owl owl:Class CHEBI:79064 biolink:NamedThing 4,4'-diaponeurosporenoate monarch-merged.owl owl:Class CHEBI:79200 biolink:NamedThing (R)-dihydrocamalexate monarch-merged.owl owl:Class CHEBI:82828 biolink:NamedThing oleanolate monarch-merged.owl owl:Class CHEBI:82961 biolink:NamedThing 17beta-estradiol 17-glucosiduronate monarch-merged.owl owl:Class CHEBI:83348 biolink:NamedThing chlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:83349 biolink:NamedThing divinyl chlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:83350 biolink:NamedThing protochlorophyllide(2-) monarch-merged.owl owl:Class CHEBI:83356 biolink:NamedThing chlorophyllide b(2-) monarch-merged.owl owl:Class CHEBI:83357 biolink:NamedThing 7(1)-hydroxychlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:83373 biolink:NamedThing 3-vinylbacteriochlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:83963 biolink:NamedThing 2-acetamido-2-deoxy-3-O-(4-deoxy-alpha-L-threo-hex-4-enopyranosyluronate)-4-O-sulfonato-D-galactopyranose(2-) monarch-merged.owl owl:Class CHEBI:85638 biolink:NamedThing haloacetate(1-) A monocarboxylic acid anion resulting from the deprotonation of the carboxy group of a haloacetic acid. monarch-merged.owl haloacetate (1-)|a haloacetate owl:Class CHEBI:85674 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate(1-) monarch-merged.owl owl:Class CHEBI:85986 biolink:NamedThing 3-deoxy-alpha-D-manno-oct-2-ulosonate monarch-merged.owl owl:Class CHEBI:86392 biolink:NamedThing 4-guanidinobutanoate monarch-merged.owl owl:Class CHEBI:87090 biolink:NamedThing (7R)-6-deoxy-D-manno-oct-7-ulosuronate monarch-merged.owl owl:Class CHEBI:87836 biolink:NamedThing 2-O-[alpha-D-mannosyl-(1->2)-alpha-D-glucosyl]-D-glycerate monarch-merged.owl owl:Class CHEBI:88093 biolink:NamedThing 6-deoxy-6-sulfo-D-gluconate(2-) monarch-merged.owl owl:Class CHEBI:88094 biolink:NamedThing 2-dehydro-3,6-dideoxy-6-sulfo-D-gluconate(2-) monarch-merged.owl owl:Class CHEBI:90791 biolink:NamedThing 3-(1-hydroxyethyl)bacteriochlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:90792 biolink:NamedThing 3-(1-hydroxyethyl)chlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:90794 biolink:NamedThing 3-acetylchlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:90795 biolink:NamedThing bacteriochlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:90857 biolink:NamedThing bacteriochlorophyllide g(2-) monarch-merged.owl owl:Class CHEBI:90892 biolink:NamedThing 2-imino-3-(indol-3-yl)propanoate monarch-merged.owl owl:Class CHEBI:90898 biolink:NamedThing protoviolaceinate monarch-merged.owl owl:Class CHEBI:90900 biolink:NamedThing violaceinate monarch-merged.owl owl:Class CHEBI:90907 biolink:NamedThing protodeoxyviolaceinate monarch-merged.owl owl:Class CHEBI:90910 biolink:NamedThing deoxyviolaceinate monarch-merged.owl owl:Class CHEBI:90955 biolink:NamedThing bacteriochlorophyllide d(1-) monarch-merged.owl owl:Class CHEBI:90963 biolink:NamedThing 3-vinylbacteriochlorophyllide d(1-) monarch-merged.owl owl:Class CHEBI:90964 biolink:NamedThing 8,12-diethyl-3-vinylbacteriochlorophyllide d(1-) monarch-merged.owl owl:Class CHEBI:90965 biolink:NamedThing bacteriochlorophyllide c(1-) monarch-merged.owl owl:Class CHEBI:90966 biolink:NamedThing 12-ethyl-8-propyl-3-vinylbacteriochlorophyllide d(1-) monarch-merged.owl owl:Class CHEBI:90967 biolink:NamedThing 12-ethyl-8-isobutyl-3-vinylbacteriochlorophyllide d(1-) monarch-merged.owl owl:Class CHEBI:90968 biolink:NamedThing 3-vinyl-bacteriochlorophyllide d(1-) monarch-merged.owl owl:Class CHEBI:90969 biolink:NamedThing 7-hydroxybacteriochlorophyllide c(1-) monarch-merged.owl owl:Class CHEBI:90988 biolink:NamedThing 3-deoxy-D-glycero-beta-D-galacto-nonulosonate monarch-merged.owl owl:Class CHEBI:91233 biolink:NamedThing 17-(4-hydroxyphenyl)heptadecanoate monarch-merged.owl owl:Class CHEBI:91236 biolink:NamedThing 19-(4-hydroxyphenyl)nonadecanoate monarch-merged.owl owl:Class CHEBI:91254 biolink:NamedThing phosphonoformate(2-) monarch-merged.owl owl:Class CHEBI:71666 biolink:NamedThing gamma-amino acid anion An amino-acid anion in which the amino group is situated gamma- to the carboxylate group. monarch-merged.owl gamma-amino acid anions chebi_ontology owl:Class CHEBI:30566 biolink:NamedThing gamma-aminobutyrate An gamma-amino acid anion resulting from the deprotonation of the carboxy group of gamma-aminobutyric acid. monarch-merged.owl gamma-aminobutyrate anion|4-aminobutanoate|4-aminobutanoic acid ion (1-)|gamma-aminobutanoate|4-Amino-butyrat|4-aminobutyrate|4-Aminobutylate -1 C4H8NO2 InChI=1S/C4H9NO2/c5-3-1-2-4(6)7/h1-3,5H2,(H,6,7)/p-1 BTCSSZJGUNDROE-UHFFFAOYSA-M 102.11186 102.05605 NCCCC([O-])=O Gmelin:559138|Beilstein:3536873|Reaxys:3536873|KEGG:C00334|PMID:12509893 CHEBI:20317|CHEBI:11961 chebi_ontology owl:Class CHEBI:11041 biolink:NamedThing (S)-3-(4-oxo-4,5-dihydro-1H-imidazol-5-yl)propanoic acid monarch-merged.owl owl:Class CHEBI:24780 biolink:NamedThing imidazoles A five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton. monarch-merged.owl chebi_ontology owl:Class CHEBI:131429 biolink:NamedThing carcinine monarch-merged.owl owl:Class CHEBI:134347 biolink:NamedThing glandicoline B monarch-merged.owl owl:Class CHEBI:139340 biolink:NamedThing 1,3-dihydroimidazole-2-thiones monarch-merged.owl owl:Class CHEBI:14434 biolink:NamedThing imidazole monarch-merged.owl owl:Class CHEBI:16255 biolink:NamedThing L-histidinol monarch-merged.owl owl:Class CHEBI:16426 biolink:NamedThing 3-(imidazol-4-yl)-2-oxopropyl dihydrogen phosphate monarch-merged.owl owl:Class CHEBI:17805 biolink:NamedThing D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate monarch-merged.owl owl:Class CHEBI:18295 biolink:NamedThing histamine A member of the class of imidazoles that is 1H-imidazole substituted at position C-4 by a 2-aminoethyl group. monarch-merged.owl Histamine|HISTAMINE|2-(4-Imidazolyl)ethylamine|1H-Imidazole-4-ethanamine|2-(1H-imidazol-4-yl)ethanamine 0 C5H9N3 InChI=1S/C5H9N3/c6-2-1-5-3-7-4-8-5/h3-4H,1-2,6H2,(H,7,8) NTYJJOPFIAHURM-UHFFFAOYSA-N 111.14518 111.07965 NCCc1c[nH]cn1 PMID:24101735|Beilstein:2012|PMID:22770225|HMDB:HMDB0000870|PDBeChem:HSM|Reaxys:2012|KEGG:C00388|Drug_Central:1375|PMID:19843401|KNApSAcK:C00001414|Gmelin:2968|Wikipedia:Histamine|CAS:51-45-6|PMID:19547708|KEGG:D08040|MetaCyc:HISTAMINE|PMID:16399866 CHEBI:43187|CHEBI:14401|CHEBI:817|CHEBI:24596 chebi_ontology owl:Class CHEBI:20432 biolink:NamedThing imidazolone monarch-merged.owl owl:Class CHEBI:22512 biolink:NamedThing aminoimidazole monarch-merged.owl owl:Class CHEBI:24779 biolink:NamedThing imidazolylacetaldehyde monarch-merged.owl owl:Class CHEBI:27248 biolink:NamedThing urocanic acid An alpha,beta-unsaturated monocarboxylic acid that is prop-2-enoic acid substituted by a 1H-imidazol-4-yl group at position 3. It is a metabolite of hidtidine. monarch-merged.owl 3-(1H-imidazol-4-yl)-2-propenoic acid|3-(1H-imidazol-4-yl)prop-2-enoic acid|3-imidazol-4-ylacrylic acid 0 C6H6N2O2 InChI=1S/C6H6N2O2/c9-6(10)2-1-5-3-7-4-8-5/h1-4H,(H,7,8)(H,9,10) LOIYMIARKYCTBW-UHFFFAOYSA-N 138.12412 138.04293 [H]C(=C([H])c1c[nH]cn1)C(O)=O Beilstein:8128219|PDBeChem:URO|ECMDB:ECMDB21396|CAS:104-98-3|Wikipedia:Urocanic_acid|PMID:24627570|HMDB:HMDB0000301|MetaCyc:UROCANATE|Reaxys:8128219|PMID:11669511|PMID:24397532 chebi_ontology owl:Class CHEBI:27570 biolink:NamedThing histidine An alpha-amino acid that is propanoic acid bearing an amino substituent at position 2 and a 1H-imidazol-4-yl group at position 3. monarch-merged.owl 2-amino-3-(1H-imidazol-4-yl)propanoic acid|Histidine|histidina|Histidin|DL-Histidine|alpha-Amino-1H-imidazole-4-propionic acid|histidine 0 C6H9N3O2 InChI=1S/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11) HNDVDQJCIGZPNO-UHFFFAOYSA-N 155.15468 155.06948 NC(Cc1c[nH]cn1)C(O)=O Gmelin:3656|CAS:4998-57-6|PMID:29286160|Wikipedia:Histidine|PMID:17190852|Reaxys:84087|PMID:22770225|KNApSAcK:C00001363|PMID:22264337|KEGG:C00768|Beilstein:84087 CHEBI:43118|CHEBI:5733|CHEBI:24598 chebi_ontology owl:Class CHEBI:27676 biolink:NamedThing L-histidinal monarch-merged.owl owl:Class CHEBI:28050 biolink:NamedThing homocarnosine A histidine derivative that is histidine in which one of the hydrogens attached to the alpha-amino group has been replaced by a 4-aminobutanoyl group. monarch-merged.owl N-(4-aminobutanoyl)histidine|gamma-Aminobutyryl histidine|N-(4-aminobutyryl)histidine 0 C10H16N4O3 InChI=1S/C10H16N4O3/c11-3-1-2-9(15)14-8(10(16)17)4-7-5-12-6-13-7/h5-6,8H,1-4,11H2,(H,12,13)(H,14,15)(H,16,17) CCLQKVKJOGVQLU-UHFFFAOYSA-N 240.25900 240.12224 NCCCC(=O)NC(Cc1c[nH]cn1)C(O)=O Reaxys:11612459 CHEBI:5750|CHEBI:24607 chebi_ontology owl:Class CHEBI:29009 biolink:NamedThing N(tele)-methylhistamine monarch-merged.owl owl:Class CHEBI:38307 biolink:NamedThing imidazolyl carboxylic acid monarch-merged.owl owl:Class CHEBI:38308 biolink:NamedThing N-acylimidazole monarch-merged.owl owl:Class CHEBI:48117 biolink:NamedThing 1-glycosylimidazole monarch-merged.owl owl:Class CHEBI:67135 biolink:NamedThing 2-nitroimidazole monarch-merged.owl owl:Class CHEBI:70399 biolink:NamedThing meleagrine monarch-merged.owl owl:Class CHEBI:8081 biolink:NamedThing phentolamine A substituted aniline that is 3-aminophenol in which the hydrogens of the amino group are replaced by 4-methylphenyl and 4,5-dihydro-1H-imidazol-2-ylmethyl groups respectively. An alpha-adrenergic antagonist, it is used for the treatment of hypertension. monarch-merged.owl Rogitine|Phentolamine mesylate|phentolamine|fentolamina|3-[(4,5-dihydro-1H-imidazol-2-ylmethyl)(4-methylphenyl)amino]phenol|phentolaminum|2-(N-(m-hydroxyphenyl)-p-toluidinomethyl)imidazoline|Regitina|Regitine 0 C17H19N3O InChI=1S/C17H19N3O/c1-13-5-7-14(8-6-13)20(12-17-18-9-10-19-17)15-3-2-4-16(21)11-15/h2-8,11,21H,9-10,12H2,1H3,(H,18,19) MRBDMNSDAVCSSF-UHFFFAOYSA-N 281.35230 281.15281 Cc1ccc(cc1)N(CC1=NCCN1)c1cccc(O)c1 CAS:50-60-2|PMID:23926134|Reaxys:272944|PMID:23887290|PMID:23666670|Drug_Central:2142|HMDB:HMDB0014830|PMID:23438114|DrugBank:DB00692|KEGG:D00509|Patent:US2503059|Wikipedia:Phentolamine|PMID:23658874|PMID:23522530|KEGG:D08362|LINCS:LSM-4022 chebi_ontology owl:Class CHEBI:82892 biolink:NamedThing 1-[2-(2,4-dichlorobenzyloxy)-2-(2,4-dichlorophenyl)ethyl]imidazole monarch-merged.owl owl:Class CHEBI:86420 biolink:NamedThing imidazole antifungal agent monarch-merged.owl owl:Class CHEBI:88291 biolink:NamedThing hydroxyimidazole monarch-merged.owl owl:Class CHEBI:11060 biolink:NamedThing (S)-carnitine monarch-merged.owl owl:Class CHEBI:17126 biolink:NamedThing carnitine An amino-acid betaine that is butanoate substituted with a hydroxy group at position C-3 and a trimethylammonium group at C-4. monarch-merged.owl D,L-carnitine|carnitine|3-hydroxy-4-(trimethylammonio)butanoate 0 C7H15NO3 InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3 PHIQHXFUZVPYII-UHFFFAOYSA-N 161.19894 161.10519 C[N+](C)(C)CC(O)CC([O-])=O MetaCyc:DL-CARNITINE|Wikipedia:Carnitine|Patent:US4315944|PMID:22770225|Reaxys:1866665|CAS:461-06-3|Beilstein:1866665|PMID:23868375|Patent:US4255449|DrugBank:DB02648|KEGG:C00487 CHEBI:20047|CHEBI:11817|CHEBI:23038|CHEBI:13947 chebi_ontology owl:Class CHEBI:16347 biolink:NamedThing (R)-carnitine monarch-merged.owl owl:Class CHEBI:1107 biolink:NamedThing 2-hexaprenyl-6-hydroxyphenol monarch-merged.owl owl:Class CHEBI:33566 biolink:NamedThing catechols Any compound containing an o-diphenol component. monarch-merged.owl 1,2-benzenediols|benzene-1,2-diols|a catechol 0 C6H2O2R4 106.079 106.00548 OC1=C(O)C(*)=C(*)C(*)=C1* KEGG:C15571 CHEBI:134187|CHEBI:18862|CHEBI:13628 chebi_ontology owl:Class CHEBI:1156 biolink:NamedThing 2-hydroxyestrone monarch-merged.owl owl:Class CHEBI:125678 biolink:NamedThing N-acetyldopamine monarch-merged.owl owl:Class CHEBI:134058 biolink:NamedThing N-palmitoyl dopamine monarch-merged.owl owl:Class CHEBI:1387 biolink:NamedThing 3,4-dihydroxyphenylethyleneglycol monarch-merged.owl owl:Class CHEBI:139162 biolink:NamedThing oleuropein aglycone monarch-merged.owl owl:Class CHEBI:140214 biolink:NamedThing 3,5-dibromocatechol monarch-merged.owl owl:Class CHEBI:16205 biolink:NamedThing biphenyl-2,3-diol monarch-merged.owl owl:Class CHEBI:16318 biolink:NamedThing 4-nitrocatechol monarch-merged.owl owl:Class CHEBI:18135 biolink:NamedThing catechol monarch-merged.owl owl:Class CHEBI:18887 biolink:NamedThing cyclohexa-3,5-diene-1,2-diol monarch-merged.owl owl:Class CHEBI:20016 biolink:NamedThing 3-ethylcatechols monarch-merged.owl owl:Class CHEBI:2106 biolink:NamedThing 5-[(E)-caffeoyl]shikimic acid monarch-merged.owl owl:Class CHEBI:23138 biolink:NamedThing chlorocatechol monarch-merged.owl owl:Class CHEBI:25289 biolink:NamedThing methylcatechol monarch-merged.owl owl:Class CHEBI:26826 biolink:NamedThing dihydroxybenzenesulfonic acid monarch-merged.owl owl:Class CHEBI:27381 biolink:NamedThing 2,2',3-trihydroxydiphenyl ether monarch-merged.owl owl:Class CHEBI:27852 biolink:NamedThing 3,4-dihydroxymandelaldehyde monarch-merged.owl owl:Class CHEBI:27978 biolink:NamedThing 3,4-dihydroxyphenylacetaldehyde monarch-merged.owl owl:Class CHEBI:28323 biolink:NamedThing 3,4-dihydroxycinnamaldehyde monarch-merged.owl owl:Class CHEBI:28517 biolink:NamedThing biphenyl-2,2',3-triol monarch-merged.owl owl:Class CHEBI:28647 biolink:NamedThing 3-O-methylgallic acid monarch-merged.owl owl:Class CHEBI:28855 biolink:NamedThing enterobactin monarch-merged.owl owl:Class CHEBI:31432 biolink:NamedThing corynebactin monarch-merged.owl owl:Class CHEBI:31883 biolink:NamedThing N-oleoyldopamine monarch-merged.owl owl:Class CHEBI:33567 biolink:NamedThing catecholamine 4-(2-Aminoethyl)pyrocatechol [4-(2-aminoethyl)benzene-1,2-diol] and derivatives formed by substitution. monarch-merged.owl catecholamines|Catecholamine 0 C8H9NO2R2 151.163 151.06333 KEGG:C02012 CHEBI:3468|CHEBI:23056 chebi_ontology owl:Class CHEBI:36062 biolink:NamedThing 3,4-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:36281 biolink:NamedThing caffeic acid monarch-merged.owl owl:Class CHEBI:41941 biolink:NamedThing (3,4-dihydroxyphenyl)acetic acid A dihydroxyphenylacetic acid having the two hydroxy substituents located at the 3- and 4-positions. It is a metabolite of dopamine. monarch-merged.owl 3,4-Dihydroxyphenyl acetic acid|(3,4-dihydroxyphenyl)acetic acid|2-(3,4-DIHYDROXYPHENYL)ACETIC ACID|3,4-Dihydroxyphenylacetic acid|homoprotocatechuic acid|3,4-dihydroxyphenylacetic acid|dopacetic acid 0 C8H8O4 InChI=1S/C8H8O4/c9-6-2-1-5(3-7(6)10)4-8(11)12/h1-3,9-10H,4H2,(H,11,12) CFFZDZCDUFSOFZ-UHFFFAOYSA-N 168.14672 168.04226 OC(=O)Cc1ccc(O)c(O)c1 PMID:4420192|PMID:22770225|HMDB:HMDB0001336|KEGG:C01161|Reaxys:2211017|PMID:15862791|CAS:102-32-9|PMID:15212971|Gmelin:874810|Beilstein:2211017|PMID:18706927|PDBeChem:DHY|DrugBank:DB01702|PMID:11868042|Wikipedia:DOPAC|PMID:19191673|PMID:11251641|PMID:11681538 CHEBI:1386|CHEBI:41936 chebi_ontology owl:Class CHEBI:50775 biolink:NamedThing 3-decaprenyl-4,5-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:62729 biolink:NamedThing 3-(all-trans-polyprenyl)benzene-1,2-diol monarch-merged.owl owl:Class CHEBI:62788 biolink:NamedThing 3-nonaprenyl-4,5-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:64410 biolink:NamedThing gerfelin monarch-merged.owl owl:Class CHEBI:64415 biolink:NamedThing violaceol I monarch-merged.owl owl:Class CHEBI:64518 biolink:NamedThing cordyol C monarch-merged.owl owl:Class CHEBI:65331 biolink:NamedThing alkyl caffeate ester monarch-merged.owl owl:Class CHEBI:70773 biolink:NamedThing capsazepine monarch-merged.owl owl:Class CHEBI:7747 biolink:NamedThing oleuropein monarch-merged.owl owl:Class CHEBI:79077 biolink:NamedThing 5-hydroxy-3-methyl-L-tyrosine monarch-merged.owl owl:Class CHEBI:80666 biolink:NamedThing norbelladine monarch-merged.owl owl:Class CHEBI:81666 biolink:NamedThing 4-methyl-5-nitrocatechol monarch-merged.owl owl:Class CHEBI:1109 biolink:NamedThing 2-hexaprenyl-6-methoxyphenol monarch-merged.owl owl:Class CHEBI:62731 biolink:NamedThing 2-methoxy-6-(all-trans-polyprenyl)phenol monarch-merged.owl owl:Class CHEBI:1235 biolink:NamedThing 2-methoxy-6-(all-trans-octaprenyl)phenol monarch-merged.owl owl:Class CHEBI:84521 biolink:NamedThing 2-methoxy-6-(all-trans-heptaprenyl)phenol monarch-merged.owl owl:Class CHEBI:84522 biolink:NamedThing 2-methoxy-6-(all-trans-nonaprenyl)phenol monarch-merged.owl owl:Class CHEBI:1110 biolink:NamedThing 2-hexaprenylphenol monarch-merged.owl owl:Class CHEBI:40407 biolink:NamedThing 2-octaprenylphenol monarch-merged.owl owl:Class CHEBI:84509 biolink:NamedThing 2-all-trans-heptaprenylphenol monarch-merged.owl owl:Class CHEBI:84510 biolink:NamedThing 2-all-trans-nonaprenylphenol monarch-merged.owl owl:Class CHEBI:84511 biolink:NamedThing 2-all-trans-decaprenylphenol monarch-merged.owl owl:Class CHEBI:111006 biolink:NamedThing maltose 6'-phosphate monarch-merged.owl owl:Class CHEBI:25143 biolink:NamedThing maltose phosphate monarch-merged.owl owl:Class CHEBI:63592 biolink:NamedThing maltose 1-phosphate monarch-merged.owl owl:Class CHEBI:1113 biolink:NamedThing cis-2-hydroxypenta-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:18355 biolink:NamedThing 2-hydroxypenta-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:48643 biolink:NamedThing (2Z)-2-hydroxypenta-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:111505 biolink:NamedThing validoxylamine A(1+) monarch-merged.owl owl:Class CHEBI:25697 biolink:NamedThing organic cation Any organic ion with a net positive charge. monarch-merged.owl organic cations chebi_ontology owl:Class CHEBI:131823 biolink:NamedThing methylated primary amine(1+) monarch-merged.owl owl:Class CHEBI:132755 biolink:NamedThing triethanolammonium monarch-merged.owl owl:Class CHEBI:133993 biolink:NamedThing 4'-O-methylnorbelladine(1+) monarch-merged.owl owl:Class CHEBI:133995 biolink:NamedThing (4aS,10bR)-noroxomaritidine(1+) monarch-merged.owl owl:Class CHEBI:133996 biolink:NamedThing (4aR,10bS)-noroxomaritidine(1+) monarch-merged.owl owl:Class CHEBI:134001 biolink:NamedThing norbelladine(1+) monarch-merged.owl owl:Class CHEBI:134210 biolink:NamedThing (R)-laudanosine(1+) monarch-merged.owl owl:Class CHEBI:134211 biolink:NamedThing (R)-tetrahydropapaverine(1+) monarch-merged.owl owl:Class CHEBI:134212 biolink:NamedThing (S)-glaucine(1+) monarch-merged.owl owl:Class CHEBI:134215 biolink:NamedThing bulbocapnine(1+) monarch-merged.owl owl:Class CHEBI:136515 biolink:NamedThing 3-(methylaminomethyl)indole(1+) monarch-merged.owl owl:Class CHEBI:136516 biolink:NamedThing gramine(1+) monarch-merged.owl owl:Class CHEBI:136699 biolink:NamedThing S-adenosyl-S-carboxymethyl-L-homocysteine monarch-merged.owl owl:Class CHEBI:137041 biolink:NamedThing quinine(1+) The monoprotonated form of quinine, the predominant species at pH7.3. monarch-merged.owl quinine|(9R)-9-hydroxy-6'-methoxy-8alpha-cinchonan-1-ium +1 C20H25N2O2 InChI=1S/C20H24N2O2/c1-3-13-12-22-9-7-14(13)10-19(22)20(23)16-6-8-21-18-5-4-15(24-2)11-17(16)18/h3-6,8,11,13-14,19-20,23H,1,7,9-10,12H2,2H3/p+1/t13-,14-,19-,20+/m0/s1 LOUPRKONTZGTKE-WZBLMQSHSA-O 325.42470 325.19105 [H][C@]1(C[C@@H]2CC[N@H+]1C[C@@H]2C=C)[C@H](O)c1ccnc2ccc(OC)cc12 chebi_ontology owl:Class CHEBI:137419 biolink:NamedThing secondary ammonium ion An organic cation obtained by protonation of any secondary amino compound; major species at pH 7.3. monarch-merged.owl secondary amine(1+)|a secondary amine owl:Class CHEBI:137982 biolink:NamedThing tertiary ammonium ion An organic cation obtained by protonation of the amino group of any tertiary amino compound. monarch-merged.owl tertiary ammonium ions|a tertiary amine|tertiary amine(1+) +1 HNR3 15.015 15.01090 [NH+](*)(*)* chebi_ontology owl:Class CHEBI:139069 biolink:NamedThing 4-hydroxytryptamine(1+) monarch-merged.owl owl:Class CHEBI:16366 biolink:NamedThing anthocyanidin cation monarch-merged.owl owl:Class CHEBI:166902 biolink:NamedThing noradrenaline(1+) monarch-merged.owl noradrenaline +1 C8H12NO3 InChI=1S/C8H11NO3/c9-4-8(12)5-1-2-6(10)7(11)3-5/h1-3,8,10-12H,4,9H2/p+1 SFLSHLFXELFNJZ-UHFFFAOYSA-O 170.187 170.08117 C1=CC(=CC(=C1O)O)C(C[NH3+])O chebi_ontology owl:Class CHEBI:17031 biolink:NamedThing chelirubine monarch-merged.owl owl:Class CHEBI:17101 biolink:NamedThing macarpine monarch-merged.owl owl:Class CHEBI:18363 biolink:NamedThing reticulinylium monarch-merged.owl owl:Class CHEBI:20794 biolink:NamedThing 7-methylguanosine monarch-merged.owl owl:Class CHEBI:34905 biolink:NamedThing paraquat An organic cation that consists of 4,4'-bipyridine bearing two N-methyl substituents loctated at the 1- and 1'-positions. monarch-merged.owl dimethyl viologen|1,1'-dimethyl-[4,4'-bipyridin]-1,1'-diium|paraquat ion|N,N'-dimethyl-4,4'-bipyridinium|1,1'-Dimethyl-4,4'-bipyridinium|N,N'-dimethyl-4,4'-bipyridinium dication|methyl viologen ion(2+)|Paraquat|paraquat dication|1,1'-dimethyl-4,4'-bipyridyldiylium +2 C12H14N2 InChI=1S/C12H14N2/c1-13-7-3-11(4-8-13)12-5-9-14(2)10-6-12/h3-10H,1-2H3/q+2 INFDPOAKFNIJBF-UHFFFAOYSA-N 186.25304 186.11460 C[n+]1ccc(cc1)-c1cc[n+](C)cc1 PMID:21619794|PMID:20582739|PMID:21619822|PMID:21598522|PMID:21750730|Reaxys:3590305|PMID:21777615|PMID:11349957|PMID:21236547|PMID:21318114|PPDB:505|PMID:21493003|Beilstein:3590305|KEGG:C14701|Gmelin:51125|PMID:21429624|PMID:21802509|PMID:20377249|PMID:21300143|CAS:4685-14-7|PMID:21616728|PMID:21787677|PMID:18620719 chebi_ontology owl:Class CHEBI:35267 biolink:NamedThing quaternary ammonium ion A derivative of ammonium, NH4(+), in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups. monarch-merged.owl quaternary ammonium ions|quaternary ammonium|Quaternary amine|quaternary ammonium ion +1 NR4 14.00670 14.00307 [*][N+]([*])([*])[*] KEGG:C06703 CHEBI:26470|CHEBI:8693 chebi_ontology owl:Class CHEBI:35286 biolink:NamedThing iminium ion Cations of structure R2C=N(+)R2. monarch-merged.owl iminium ions|iminium cations|iminium ion chebi_ontology owl:Class CHEBI:38697 biolink:NamedThing anthocyanin monarch-merged.owl owl:Class CHEBI:40721 biolink:NamedThing adenosine 5'-monophosphate(1+) An organic cation that is the conjugate acid of adenosine 5'-monophosphate (AMP) obtained by selective protonation at position N1 on the purine moiety. monarch-merged.owl AMP(1+)|N1-PROTONATED ADENOSINE-5'-MONOPHOSPHATE +1 C10H15N5O7P InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/p+1/t4-,6-,7-,10-/m1/s1 UDMBCSSLTHHNCD-KQYNXXCUSA-O 348.22920 348.07036 Nc1[nH+]cnc2n(cnc12)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O PDBeChem:AP7 chebi_ontology owl:Class CHEBI:50334 biolink:NamedThing pyridinium ion monarch-merged.owl pyridinium ions chebi_ontology owl:Class CHEBI:52837 biolink:NamedThing quinolinium ion monarch-merged.owl quinolinium ions|quinolinium ion chebi_ontology owl:Class CHEBI:52839 biolink:NamedThing acridinium ion monarch-merged.owl owl:Class CHEBI:566789 biolink:NamedThing ethylaminium monarch-merged.owl owl:Class CHEBI:57482 biolink:NamedThing streptomycin 3''-phosphate(1+) monarch-merged.owl owl:Class CHEBI:57682 biolink:NamedThing coformycin(1+) monarch-merged.owl owl:Class CHEBI:57761 biolink:NamedThing pyridoxaminium(1+) An ammonium ion that is the conjugate acid of pyridoxamine arising from selective protonation of the primary amino group; major species at pH 7.3. monarch-merged.owl pyridoxamine|pyridoxaminium cation|[3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-4-yl]methanaminium +1 C8H13N2O2 InChI=1S/C8H12N2O2/c1-5-8(12)7(2-9)6(4-11)3-10-5/h3,11-12H,2,4,9H2,1H3/p+1 NHZMQXZHNVQTQA-UHFFFAOYSA-O 169.20100 169.09715 Cc1ncc(CO)c(C[NH3+])c1O chebi_ontology owl:Class CHEBI:57787 biolink:NamedThing streptomycin 6-phosphate(1+) monarch-merged.owl owl:Class CHEBI:57797 biolink:NamedThing dihydrostreptomycin 6-phosphate(1+) monarch-merged.owl owl:Class CHEBI:57834 biolink:NamedThing spermidine(3+) monarch-merged.owl owl:Class CHEBI:57993 biolink:NamedThing (S)-N-methylcoclaurinium(1+) monarch-merged.owl owl:Class CHEBI:57996 biolink:NamedThing nororientalinium(1+) monarch-merged.owl owl:Class CHEBI:58010 biolink:NamedThing (S)-3'-hydroxy-N-methylcoclaurinium(1+) monarch-merged.owl owl:Class CHEBI:58012 biolink:NamedThing strictosidine aglycone(1+) monarch-merged.owl owl:Class CHEBI:58025 biolink:NamedThing octopaminium The conjugate acid of octopamine; major species at pH 7.3. monarch-merged.owl 4-(2-azaniumyl-1-hydroxyethyl)phenol|octopaminium cation|4-(2-ammonio-1-hydroxyethyl)phenol|octopaminium(1+)|2-hydroxy-2-(4-hydroxyphenyl)ethan-1-aminium|2-hydroxy-2-(4-hydroxyphenyl)ethanaminium|octopamine +1 C8H12NO2 InChI=1S/C8H11NO2/c9-5-8(11)6-1-3-7(10)4-2-6/h1-4,8,10-11H,5,9H2/p+1 QHGUCRYDKWKLMG-UHFFFAOYSA-O 154.18640 154.08626 [NH3+]CC(O)c1ccc(O)cc1 chebi_ontology owl:Class CHEBI:58029 biolink:NamedThing cysteaminium monarch-merged.owl owl:Class CHEBI:58035 biolink:NamedThing 1D-3-ammmonio-1-guanidiniumyl-1,3-dideoxy-scyllo-inositol(2+) monarch-merged.owl owl:Class CHEBI:58037 biolink:NamedThing O-demethylpuromycin(1+) monarch-merged.owl owl:Class CHEBI:58039 biolink:NamedThing N-methylputrescinium(2+) monarch-merged.owl owl:Class CHEBI:58040 biolink:NamedThing dimethylaminium monarch-merged.owl owl:Class CHEBI:58061 biolink:NamedThing salutaridinium(1+) monarch-merged.owl owl:Class CHEBI:58072 biolink:NamedThing carbon monoxide(1+) Conjugate acid of carbon monoxide arising from protonation of the carbon; major species at pH 7.3. monarch-merged.owl methylidyneoxonium|CO(1+)|methylidyneoxidanium owl:Class CHEBI:58093 biolink:NamedThing homoserinium lactone monarch-merged.owl owl:Class CHEBI:58097 biolink:NamedThing morphine(1+) monarch-merged.owl owl:Class CHEBI:58101 biolink:NamedThing N(1)-acetylsperminium(3+) monarch-merged.owl owl:Class CHEBI:58144 biolink:NamedThing (R)-reticulinium(1+) monarch-merged.owl owl:Class CHEBI:58155 biolink:NamedThing N-methyltyraminium monarch-merged.owl owl:Class CHEBI:58164 biolink:NamedThing (S)-atropinium monarch-merged.owl owl:Class CHEBI:58182 biolink:NamedThing (S)-6-hydroxynicotinium(1+) monarch-merged.owl owl:Class CHEBI:58213 biolink:NamedThing ammonioacetaldehyde monarch-merged.owl owl:Class CHEBI:58214 biolink:NamedThing kanamycin A(4+) monarch-merged.owl owl:Class CHEBI:58234 biolink:NamedThing 3-hydroxyquininium monarch-merged.owl owl:Class CHEBI:58253 biolink:NamedThing (S)-norcoclaurinium(1+) monarch-merged.owl owl:Class CHEBI:58263 biolink:NamedThing N-acetylputrescinium monarch-merged.owl owl:Class CHEBI:58264 biolink:NamedThing 4-ammoniobutanal monarch-merged.owl owl:Class CHEBI:58290 biolink:NamedThing trypanothione(1+) monarch-merged.owl owl:Class CHEBI:58295 biolink:NamedThing S-acetylcysteaminium monarch-merged.owl owl:Class CHEBI:58318 biolink:NamedThing N-carbamoylputrescinium(1+) monarch-merged.owl owl:Class CHEBI:58320 biolink:NamedThing ammonioacetone monarch-merged.owl owl:Class CHEBI:58324 biolink:NamedThing N(1)-acetylspermidinium(2+) monarch-merged.owl owl:Class CHEBI:58334 biolink:NamedThing cyclohexyl isocyanide(1+) monarch-merged.owl owl:Class CHEBI:58374 biolink:NamedThing 3-ammoniopropanal monarch-merged.owl owl:Class CHEBI:58379 biolink:NamedThing deacetylipecoside(1+) monarch-merged.owl owl:Class CHEBI:58382 biolink:NamedThing 5-ammoniopentanamide monarch-merged.owl owl:Class CHEBI:58390 biolink:NamedThing N(6')-acetylkanamycin B(4+) monarch-merged.owl owl:Class CHEBI:58549 biolink:NamedThing kanamycin B(5+) monarch-merged.owl owl:Class CHEBI:59789 biolink:NamedThing S-adenosyl-L-methionine zwitterion A zwitterionic tautomer of S-adenosyl-L-methionine arising from shift of the proton from the carboxy group to the amino group. monarch-merged.owl S-adenosyl-L-methionine|[(3S)-3-azaniumyl-3-carboxylatopropyl](5'-deoxyadenosin-5'-yl)(methyl)sulfonium +1 C15H23N6O5S InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/p+1/t7-,8+,10+,11+,14+,27?/m0/s1 MEFKEPWMEQBLKI-AIRLBKTGSA-O 399.44500 399.14452 C[S+](CC[C@H]([NH3+])C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12 chebi_ontology owl:Class CHEBI:59964 biolink:NamedThing imidazolium ion monarch-merged.owl owl:Class CHEBI:60194 biolink:NamedThing peptide cation monarch-merged.owl owl:Class CHEBI:60255 biolink:NamedThing puromycin(1+) monarch-merged.owl owl:Class CHEBI:60521 biolink:NamedThing indole alkaloid cation monarch-merged.owl owl:Class CHEBI:62220 biolink:NamedThing pyocyanine(1+) monarch-merged.owl owl:Class CHEBI:62227 biolink:NamedThing L-adenosylselenomethionine zwitterion monarch-merged.owl owl:Class CHEBI:63048 biolink:NamedThing 1,3-thiazolium cation An organic cation resulting from protonation or quaternisation at the 3-position of any 1,3-thiazole. monarch-merged.owl 1,3-thiazolium cations chebi_ontology owl:Class CHEBI:63309 biolink:NamedThing mycinamicin cation monarch-merged.owl owl:Class CHEBI:63694 biolink:NamedThing D-synephrine(1+) monarch-merged.owl owl:Class CHEBI:63863 biolink:NamedThing 3'-N-debenzoyltaxol(1+) monarch-merged.owl owl:Class CHEBI:64204 biolink:NamedThing methiothepin(2+) A doubly-charged organic cation arising from protonation of the two tertiary amino functions of methiothepin. monarch-merged.owl 1-methyl-4-[8-(methylthio)-10,11-dihydrodibenzo[b,f]thiepin-10-yl]piperazinediium|methiothepin cation +2 C20H26N2S2 InChI=1S/C20H24N2S2/c1-21-9-11-22(12-10-21)18-13-15-5-3-4-6-19(15)24-20-8-7-16(23-2)14-17(18)20/h3-8,14,18H,9-13H2,1-2H3/p+2 RLJFTICUTYVZDG-UHFFFAOYSA-P 358.56400 358.15264 CSc1ccc2Sc3ccccc3CC([NH+]3CC[NH+](C)CC3)c2c1 chebi_ontology owl:Class CHEBI:64261 biolink:NamedThing lupanine(1+) monarch-merged.owl owl:Class CHEBI:64262 biolink:NamedThing 17-hydroxylupanine(1+) monarch-merged.owl owl:Class CHEBI:64290 biolink:NamedThing erythromycin cation monarch-merged.owl owl:Class CHEBI:64678 biolink:NamedThing anthracycline cation monarch-merged.owl owl:Class CHEBI:64802 biolink:NamedThing L-histidinal(1+) monarch-merged.owl owl:Class CHEBI:64854 biolink:NamedThing N(alpha)-acetyl-L-lysine methyl ester(1+) monarch-merged.owl owl:Class CHEBI:64858 biolink:NamedThing aminopropylcadaverine(3+) monarch-merged.owl owl:Class CHEBI:65002 biolink:NamedThing 3-ammonio-2,3-dideoxy-scyllo-inosose(1+) monarch-merged.owl owl:Class CHEBI:65003 biolink:NamedThing 2-deoxy-scyllo-inosamine(1+) monarch-merged.owl owl:Class CHEBI:65010 biolink:NamedThing 2'-N-acetylparomamine(2+) monarch-merged.owl owl:Class CHEBI:65028 biolink:NamedThing ribostamycin(4+) monarch-merged.owl owl:Class CHEBI:65030 biolink:NamedThing 2'''-acetyl-6'''-hydroxyneomycin C(4+) monarch-merged.owl owl:Class CHEBI:65031 biolink:NamedThing 6'''-hydroxyneomycin C(5+) monarch-merged.owl owl:Class CHEBI:65032 biolink:NamedThing dihydrochanoclavine-I aldehyde(1+) monarch-merged.owl owl:Class CHEBI:65034 biolink:NamedThing 6,8-dimethyl-6,7-didehydroergolin-6-ium monarch-merged.owl owl:Class CHEBI:65036 biolink:NamedThing didehydroagroclavine monarch-merged.owl owl:Class CHEBI:65045 biolink:NamedThing festuclavine(1+) monarch-merged.owl owl:Class CHEBI:65068 biolink:NamedThing 6'''-oxoneomycin C(5+) monarch-merged.owl owl:Class CHEBI:65069 biolink:NamedThing 2-deoxystreptamine(2+) monarch-merged.owl owl:Class CHEBI:65071 biolink:NamedThing 2'-deamino-2'-hydroxyparomamine(2+) monarch-merged.owl owl:Class CHEBI:65076 biolink:NamedThing neamine(4+) monarch-merged.owl owl:Class CHEBI:65077 biolink:NamedThing neomycin C(6+) monarch-merged.owl owl:Class CHEBI:65082 biolink:NamedThing 5''-phosphoribostamycin(2+) monarch-merged.owl owl:Class CHEBI:65085 biolink:NamedThing butirosin B(4+) monarch-merged.owl owl:Class CHEBI:65296 biolink:NamedThing primary ammonium ion An ammonium ion derivative resulting from the protonation of the nitrogen atom of a primary amino compound. Major species at pH 7.3. monarch-merged.owl substituted ammonium|a primary amine +1 H3NR 17.031 17.02655 [NH3+][*] chebi_ontology owl:Class CHEBI:66878 biolink:NamedThing pseudooxynicotinium(1+) monarch-merged.owl owl:Class CHEBI:66941 biolink:NamedThing ecgononium methyl ester(1+) monarch-merged.owl owl:Class CHEBI:66944 biolink:NamedThing 2,6-dihydroxypseudooxynicotinium(1+) monarch-merged.owl owl:Class CHEBI:67145 biolink:NamedThing fumigaclavine A(1+) monarch-merged.owl owl:Class CHEBI:67146 biolink:NamedThing fumigaclavine B(1+) monarch-merged.owl owl:Class CHEBI:67147 biolink:NamedThing fumigaclavine C(1+) monarch-merged.owl owl:Class CHEBI:67213 biolink:NamedThing 2'-deamino-2'-hydroxyneamine(3+) monarch-merged.owl owl:Class CHEBI:67214 biolink:NamedThing 2'-deamino-2'-hydroxy-6'-dehydroparomamine(2+) monarch-merged.owl owl:Class CHEBI:68668 biolink:NamedThing legionaminate(1+) monarch-merged.owl owl:Class CHEBI:70977 biolink:NamedThing alkane-alpha,omega-diammonium(2+) monarch-merged.owl owl:Class CHEBI:70988 biolink:NamedThing N-monoacetylalkane-alpha,omega-diamine(1+) monarch-merged.owl owl:Class CHEBI:71021 biolink:NamedThing 15-methylhexadecasphing-4-enine-1-phosphocholine(1+) monarch-merged.owl owl:Class CHEBI:71406 biolink:NamedThing (R)-adrenaline(1+) An organic cation that is the conjugate acid of (R)-adrenaline, obtained by protonation of the amino group; major species at pH 7.3. monarch-merged.owl (2R)-2-(3,4-dihydroxyphenyl)-2-hydroxy-N-methylethanaminium|L-epinephrine cation|(R)-adrenaline cation|L-epinephrine(1+)|(R)-adrenaline +1 C9H14NO3 InChI=1S/C9H13NO3/c1-10-5-9(13)6-2-3-7(11)8(12)4-6/h2-4,9-13H,5H2,1H3/p+1/t9-/m0/s1 UCTWMZQNUQWSLP-VIFPVBQESA-O 184.21240 184.09682 C[NH2+]C[C@H](O)c1ccc(O)c(O)c1 MetaCyc:L-EPINEPHRINE chebi_ontology owl:Class CHEBI:72344 biolink:NamedThing alpha-D-kanosamine(1+) monarch-merged.owl owl:Class CHEBI:72447 biolink:NamedThing 2-deoxystreptamine(1+) monarch-merged.owl owl:Class CHEBI:72587 biolink:NamedThing (R)-noradrenaline(1+) monarch-merged.owl owl:Class CHEBI:72648 biolink:NamedThing (3R)-7,2'-dihydroxy-4'-methoxyisoflavanol 4-oxonium cation monarch-merged.owl owl:Class CHEBI:72704 biolink:NamedThing chromenyliums monarch-merged.owl owl:Class CHEBI:72732 biolink:NamedThing 3-amino-3-deoxy-D-glucopyranose(1+) monarch-merged.owl owl:Class CHEBI:72755 biolink:NamedThing kanamycin C(4+) monarch-merged.owl owl:Class CHEBI:72756 biolink:NamedThing kanamycin X(3+) monarch-merged.owl owl:Class CHEBI:72757 biolink:NamedThing 2'-oxokanamycin(4+) monarch-merged.owl owl:Class CHEBI:72944 biolink:NamedThing 3''-deamino-3''-hydroxykanamycin B(4+) monarch-merged.owl owl:Class CHEBI:72945 biolink:NamedThing 3''-deamino-3''-hydroxykanamycin C(3+) monarch-merged.owl owl:Class CHEBI:72946 biolink:NamedThing 3''-deamino-3''-hydroxykanamycin X(2+) monarch-merged.owl owl:Class CHEBI:72947 biolink:NamedThing kanamycin D(3+) monarch-merged.owl owl:Class CHEBI:72949 biolink:NamedThing chanoclavine-I(1+) monarch-merged.owl owl:Class CHEBI:73675 biolink:NamedThing 6''-O-carbamoylkanamycin A(4+) monarch-merged.owl owl:Class CHEBI:73678 biolink:NamedThing tobramycin(5+) monarch-merged.owl owl:Class CHEBI:73679 biolink:NamedThing nebramycin 5'(5+) monarch-merged.owl owl:Class CHEBI:74169 biolink:NamedThing L-alaninamide(1+) monarch-merged.owl owl:Class CHEBI:74659 biolink:NamedThing N(2),N(2),N(7)-trimethylguanosine 5'-triphosphate(1+) monarch-merged.owl owl:Class CHEBI:75296 biolink:NamedThing 13-dihydrodaunorubicin(1+) monarch-merged.owl owl:Class CHEBI:75297 biolink:NamedThing 13-deoxydaunorubicin(1+) monarch-merged.owl owl:Class CHEBI:75616 biolink:NamedThing gentamicin C(5+) monarch-merged.owl owl:Class CHEBI:75617 biolink:NamedThing N(3')-acetylgentamycin C(4+) monarch-merged.owl owl:Class CHEBI:75792 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phospho-1'-(3'-O-L-lysyl)-sn-glycerol(1+) monarch-merged.owl owl:Class CHEBI:75929 biolink:NamedThing D-cycloserine(1+) monarch-merged.owl owl:Class CHEBI:75963 biolink:NamedThing chloroorienticin B(1+) monarch-merged.owl owl:Class CHEBI:76102 biolink:NamedThing laudanine(1+) monarch-merged.owl owl:Class CHEBI:76800 biolink:NamedThing pikromycin(1+) monarch-merged.owl owl:Class CHEBI:76801 biolink:NamedThing narbomycin(1+) monarch-merged.owl owl:Class CHEBI:76802 biolink:NamedThing 5-O-beta-D-mycaminosyltylactone(1+) monarch-merged.owl owl:Class CHEBI:76803 biolink:NamedThing 5-O-beta-D-mycaminosyl-20-oxotylonolide(1+) monarch-merged.owl owl:Class CHEBI:76804 biolink:NamedThing 5-O-mycaminosyltylonolide(1+) monarch-merged.owl owl:Class CHEBI:76810 biolink:NamedThing demethyllactenocin(1+) monarch-merged.owl owl:Class CHEBI:76819 biolink:NamedThing demethylmacrocin(1+) monarch-merged.owl owl:Class CHEBI:76820 biolink:NamedThing macrocin(1+) monarch-merged.owl owl:Class CHEBI:76842 biolink:NamedThing vancomycin(1+) monarch-merged.owl owl:Class CHEBI:76921 biolink:NamedThing pavine(1+) monarch-merged.owl owl:Class CHEBI:76922 biolink:NamedThing argemonine(1+) monarch-merged.owl owl:Class CHEBI:77047 biolink:NamedThing tylosin(1+) monarch-merged.owl owl:Class CHEBI:77073 biolink:NamedThing rhodomycin D(1+) monarch-merged.owl owl:Class CHEBI:77074 biolink:NamedThing 4-O-methylrhodomycin D(1+) monarch-merged.owl owl:Class CHEBI:77350 biolink:NamedThing neopikromycin(1+) monarch-merged.owl owl:Class CHEBI:77351 biolink:NamedThing novapikromycin(1+) monarch-merged.owl owl:Class CHEBI:77352 biolink:NamedThing methymycin(1+) monarch-merged.owl owl:Class CHEBI:77353 biolink:NamedThing neomethymycin(1+) monarch-merged.owl owl:Class CHEBI:77354 biolink:NamedThing novamethymycin(1+) monarch-merged.owl owl:Class CHEBI:77452 biolink:NamedThing 2-deoxystreptamine cation monarch-merged.owl owl:Class CHEBI:77617 biolink:NamedThing senecionine(1+) monarch-merged.owl owl:Class CHEBI:77618 biolink:NamedThing norajmaline(1+) monarch-merged.owl owl:Class CHEBI:77674 biolink:NamedThing queuine(1+) monarch-merged.owl owl:Class CHEBI:77786 biolink:NamedThing 1-hexadecyl-2-ammonio-2-deoxy-sn-glycerol monarch-merged.owl owl:Class CHEBI:77798 biolink:NamedThing melamine(1+) monarch-merged.owl owl:Class CHEBI:77827 biolink:NamedThing 2-arylethylammomium(1+) monarch-merged.owl owl:Class CHEBI:78222 biolink:NamedThing (R)-2-methylpyrrolidinium monarch-merged.owl owl:Class CHEBI:79008 biolink:NamedThing (R)-nicotinium(1+) The conjugate acid of (R)-nicotine arising from selective protonation of the tertiary amino group; major species at pH 7.3. monarch-merged.owl (2R)-1-methyl-2-(pyridin-3-yl)pyrrolidinium|(R)-nicotine +1 C10H15N2 InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/p+1/t10-/m1/s1 SNICXCGAKADSCV-SNVBAGLBSA-O 163.23900 163.12297 C[NH+]1CCC[C@@H]1c1cccnc1 MetaCyc:R-NICOTINE chebi_ontology owl:Class CHEBI:79186 biolink:NamedThing 3'-N-debenzoyl-2'-deoxytaxol(1+) monarch-merged.owl owl:Class CHEBI:82768 biolink:NamedThing caldopentamine(5+) monarch-merged.owl owl:Class CHEBI:82769 biolink:NamedThing caldopentamine(4+) monarch-merged.owl owl:Class CHEBI:82770 biolink:NamedThing N(4)-aminopropylspermidine(4+) monarch-merged.owl owl:Class CHEBI:82772 biolink:NamedThing N(4)-aminopropylspermine(5+) monarch-merged.owl owl:Class CHEBI:83725 biolink:NamedThing primary alkymercury(1+) monarch-merged.owl owl:Class CHEBI:83876 biolink:NamedThing cationic sphingoid An organic cation obtained by protonation of the amino function of any sphingoid monarch-merged.owl cationic sphingoids|sphingoid cation|sphingoid cations chebi_ontology owl:Class CHEBI:84363 biolink:NamedThing acarbose(1+) monarch-merged.owl owl:Class CHEBI:84745 biolink:NamedThing amiloride(1+) monarch-merged.owl owl:Class CHEBI:85007 biolink:NamedThing N(1),N(8)-bis(coumaroyl)spermidine(1+) monarch-merged.owl owl:Class CHEBI:85035 biolink:NamedThing methyl-Co(2+) monarch-merged.owl owl:Class CHEBI:85488 biolink:NamedThing chloroeremomycin(2+) monarch-merged.owl owl:Class CHEBI:85491 biolink:NamedThing epivancomycin(1+) monarch-merged.owl owl:Class CHEBI:85603 biolink:NamedThing 1-tuberculosinyladenosine(1+) monarch-merged.owl owl:Class CHEBI:86993 biolink:NamedThing (R)-fluoxetine(1+) An organic cation resulting from the protonation of the amino group of (R)-fluoxetine. monarch-merged.owl (3R)-N-methyl-3-phenyl-3-[4-(trifluoromethyl)phenoxy]propan-1-aminium|(+)-fluoxetine(1+) +1 C17H19F3NO InChI=1S/C17H18F3NO/c1-21-12-11-16(13-5-3-2-4-6-13)22-15-9-7-14(8-10-15)17(18,19)20/h2-10,16,21H,11-12H2,1H3/p+1/t16-/m1/s1 RTHCYVBBDHJXIQ-MRXNPFEDSA-O 310.33350 310.14133 C[NH2+]CC[C@@H](Oc1ccc(cc1)C(F)(F)F)c1ccccc1 Reaxys:25263171 chebi_ontology owl:Class CHEBI:86995 biolink:NamedThing (S)-fluoxetine(1+) An organic cation resulting from the protonation of the amino group of (S)-fluoxetine. monarch-merged.owl (3S)-N-methyl-3-phenyl-3-[4-(trifluoromethyl)phenoxy]propan-1-aminium|(-)-fluoxetine(1+) +1 C17H19F3NO InChI=1S/C17H18F3NO/c1-21-12-11-16(13-5-3-2-4-6-13)22-15-9-7-14(8-10-15)17(18,19)20/h2-10,16,21H,11-12H2,1H3/p+1/t16-/m0/s1 RTHCYVBBDHJXIQ-INIZCTEOSA-O 310.33350 310.14133 C[NH2+]CC[C@H](Oc1ccc(cc1)C(F)(F)F)c1ccccc1 Reaxys:25263174 chebi_ontology owl:Class CHEBI:87164 biolink:NamedThing 6-hydroxy-N-methylmyosmine(1+) monarch-merged.owl owl:Class CHEBI:87835 biolink:NamedThing framycetin(6+) monarch-merged.owl owl:Class CHEBI:8944 biolink:NamedThing S-adenosyl-4-methylthio-2-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:90218 biolink:NamedThing gentamycin(2+) monarch-merged.owl owl:Class CHEBI:9066 biolink:NamedThing L-adenosylselenomethionine monarch-merged.owl owl:Class CHEBI:90784 biolink:NamedThing aurachin B(1-) monarch-merged.owl owl:Class CHEBI:90884 biolink:NamedThing 2'-hydroxyrifampicin(1-) monarch-merged.owl owl:Class CHEBI:91178 biolink:NamedThing N-demethylindolmycin(1+) monarch-merged.owl owl:Class CHEBI:91179 biolink:NamedThing indolmycin(1+) monarch-merged.owl owl:Class CHEBI:35274 biolink:NamedThing ammonium ion derivative A derivative of ammonium, NH4(+), in which one (or more) of the hydrogens bonded to the nitrogen have been replaced with univalent organyl groups. The substituting carbon of the organyl group must not itself be directly attached to a heteroatom (thereby excluding protonated amides, hemiaminals, etc). monarch-merged.owl ammonium ion derivatives|azanium ion derivative|azanium ion derivatives chebi_ontology owl:Class CHEBI:134408 biolink:NamedThing N-acetylcadaverine(1+) monarch-merged.owl owl:Class CHEBI:138980 biolink:NamedThing AZD1979(1+) monarch-merged.owl owl:Class CHEBI:139161 biolink:NamedThing 1-(4-methoxyphenyl)-N-methyl-N-[(3-methyloxetan-3-yl)methyl]methanamine(1+) monarch-merged.owl owl:Class CHEBI:139164 biolink:NamedThing 2-{[(4-methoxybenzyl)(methyl)amino]methyl}-2-methylpropane-1,3-diol(1+) monarch-merged.owl owl:Class CHEBI:149548 biolink:NamedThing emetine(2+) An ammonium ion derivative obtained from protonation of the nitrogens of emetine. It is the major species at pH 7.3. monarch-merged.owl emetine dication|(2S)-6',7',10,11-tetramethoxyemetan-2',5-diium +2 C29H42N2O4 InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/p+2/t18-,21-,24+,25-/m0/s1 AUVVAXYIELKVAI-CKBKHPSWSA-P 482.664 482.31336 C=1C(=C(C=C2C1CC[NH+]3C[C@@H]([C@@](C[C@@]23[H])([H])C[C@@]4([H])[NH2+]CCC=5C4=CC(=C(C5)OC)OC)CC)OC)OC MetaCyc:CPD-14817|PMID:5985282 chebi_ontology owl:Class CHEBI:149673 biolink:NamedThing (1S,2R)-ephedrine(1+) monarch-merged.owl owl:Class CHEBI:16475 biolink:NamedThing 2-[3-carboxy-3-(methylammonio)propyl]-L-histidine monarch-merged.owl owl:Class CHEBI:224366 biolink:NamedThing tert-butylammonium monarch-merged.owl owl:Class CHEBI:225237 biolink:NamedThing 2-phenylethanaminium monarch-merged.owl owl:Class CHEBI:225238 biolink:NamedThing benzylaminium monarch-merged.owl owl:Class CHEBI:327995 biolink:NamedThing tyraminium monarch-merged.owl owl:Class CHEBI:350546 biolink:NamedThing serotonin(1+) An ammonium ion that is the conjugate acid of serotonin; major species at pH 7.3. monarch-merged.owl 2-(5-hydroxy-1H-indol-3-yl)ethanaminium|serotonin|serotonin cation +1 C10H13N2O InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2/p+1 QZAYGJVTTNCVMB-UHFFFAOYSA-O 177.22250 177.10224 [NH3+]CCc1c[nH]c2ccc(O)cc12 chebi_ontology owl:Class CHEBI:42677 biolink:NamedThing (2R)-2-hydroxypropylammonium monarch-merged.owl owl:Class CHEBI:42939 biolink:NamedThing cyclohexylammonium monarch-merged.owl owl:Class CHEBI:45725 biolink:NamedThing spermine(4+) monarch-merged.owl owl:Class CHEBI:45791 biolink:NamedThing triethylammonium ion monarch-merged.owl owl:Class CHEBI:51856 biolink:NamedThing methylphenidate(1+) monarch-merged.owl owl:Class CHEBI:566825 biolink:NamedThing propan-1-aminium monarch-merged.owl owl:Class CHEBI:57295 biolink:NamedThing (-)-ephedrinium monarch-merged.owl owl:Class CHEBI:57431 biolink:NamedThing N-(ammoniomethyl)urea monarch-merged.owl owl:Class CHEBI:57443 biolink:NamedThing S-adenosylmethioninaminium monarch-merged.owl owl:Class CHEBI:57459 biolink:NamedThing (6S)-6-hydroxyhyoscyaminium monarch-merged.owl owl:Class CHEBI:57473 biolink:NamedThing 3'-demethylstaurosporinium(1+) monarch-merged.owl owl:Class CHEBI:57491 biolink:NamedThing staurosporinium monarch-merged.owl owl:Class CHEBI:57492 biolink:NamedThing isopropylaminium monarch-merged.owl owl:Class CHEBI:57493 biolink:NamedThing pseudotropinium monarch-merged.owl owl:Class CHEBI:57554 biolink:NamedThing tropinium monarch-merged.owl owl:Class CHEBI:57578 biolink:NamedThing 6-O-methylnorlaudanosolinium monarch-merged.owl owl:Class CHEBI:57581 biolink:NamedThing (S)-coclaurinium monarch-merged.owl owl:Class CHEBI:57598 biolink:NamedThing 1-benzyl-2-methyl-1,2,3,4-tetrahydroisoquinolinium monarch-merged.owl owl:Class CHEBI:57668 biolink:NamedThing D-ornithinium(1+) monarch-merged.owl owl:Class CHEBI:57672 biolink:NamedThing 7-O-acetylsalutaridinol(1+) monarch-merged.owl owl:Class CHEBI:57697 biolink:NamedThing deaminohydroxyblasticidin S(1+) monarch-merged.owl owl:Class CHEBI:57699 biolink:NamedThing L-histidinol(1+) monarch-merged.owl owl:Class CHEBI:57704 biolink:NamedThing cationic chitosan monarch-merged.owl owl:Class CHEBI:57728 biolink:NamedThing morphiniumone(1+) monarch-merged.owl owl:Class CHEBI:57741 biolink:NamedThing phenylethanolaminium monarch-merged.owl owl:Class CHEBI:57790 biolink:NamedThing benzyl cetraxate(1+) monarch-merged.owl owl:Class CHEBI:57803 biolink:NamedThing L-tryptophanamide(1+) monarch-merged.owl owl:Class CHEBI:57811 biolink:NamedThing sym-homospermidinium(3+) monarch-merged.owl owl:Class CHEBI:57835 biolink:NamedThing glutathionylspermidinium(2+) monarch-merged.owl owl:Class CHEBI:57851 biolink:NamedThing tropiniumone monarch-merged.owl owl:Class CHEBI:57858 biolink:NamedThing atropinium monarch-merged.owl owl:Class CHEBI:57866 biolink:NamedThing 3-methylthiopropylaminium monarch-merged.owl owl:Class CHEBI:57871 biolink:NamedThing codeine(1+) monarch-merged.owl owl:Class CHEBI:57873 biolink:NamedThing (S)-reticulinium(1+) monarch-merged.owl owl:Class CHEBI:57887 biolink:NamedThing tryptaminium An ammonium ion that is the conjugate acid of tryptamine arising from protonation of the primary amino group; major species at pH 7.3. monarch-merged.owl tryptaminium cation|2-(1H-indol-3-yl)ethanaminium|tryptamine|tryptaminium(1+) +1 C10H13N2 InChI=1S/C10H12N2/c11-6-5-8-7-12-10-4-2-1-3-9(8)10/h1-4,7,12H,5-6,11H2/p+1 APJYDQYYACXCRM-UHFFFAOYSA-O 161.22310 161.10732 [NH3+]CCc1c[nH]c2ccccc12 Gmelin:533978 chebi_ontology owl:Class CHEBI:57894 biolink:NamedThing berbamuninium(2+) monarch-merged.owl owl:Class CHEBI:57902 biolink:NamedThing 1-benzyl-1,2,3,4-tetrahydroisoquinolin-2-ium monarch-merged.owl owl:Class CHEBI:57909 biolink:NamedThing kanamycin A 3'-phosphate(2+) monarch-merged.owl owl:Class CHEBI:57920 biolink:NamedThing bis(3-azaniumylpropyl)azanium monarch-merged.owl owl:Class CHEBI:57921 biolink:NamedThing N(3')-acetyl-2-deoxystreptamine antibiotic(1+) monarch-merged.owl owl:Class CHEBI:57929 biolink:NamedThing 7''-O-phosphohygromycin B(1+) monarch-merged.owl owl:Class CHEBI:57933 biolink:NamedThing oleandomycin(1+) monarch-merged.owl owl:Class CHEBI:57934 biolink:NamedThing psychosine(1+) The ammonium ion resulting from the protonation of the amino group of psychosine. monarch-merged.owl (2S,3R,4E)-1-(beta-D-galactopyranosyloxy)-3-hydroxyoctadec-4-en-2-aminium|(2S,3R,4E)-3-hydroxy-1-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadec-4-en-2-aminium|beta-D-galactosyl-(1<->1)-sphing-4-enine owl:Class CHEBI:57946 biolink:NamedThing N-methylphenylethanolaminium monarch-merged.owl owl:Class CHEBI:57971 biolink:NamedThing hygromycin B(3+) monarch-merged.owl owl:Class CHEBI:58091 biolink:NamedThing deacetylisoipecoside(1+) monarch-merged.owl owl:Class CHEBI:58113 biolink:NamedThing L-2-ammoniohexano-6-lactam monarch-merged.owl owl:Class CHEBI:58138 biolink:NamedThing N-caffeoylputrescinium(1+) monarch-merged.owl owl:Class CHEBI:58389 biolink:NamedThing trimethylammonium An ammonium ion that is the conjugate acid of trimethylamine, obtained via protonation of the nitrogen; major species at pH 7.3. monarch-merged.owl N,N-dimethylmethanaminium|trimethylazanium cation|trimethylazanium|trimethylamine|trimethylammonium cation +1 C3H10N InChI=1S/C3H9N/c1-4(2)3/h1-3H3/p+1 GETQZCLCWQTVFV-UHFFFAOYSA-O 60.11820 60.08078 C[NH+](C)C MetaCyc:TRIMETHYLAMINE|Reaxys:16709444 chebi_ontology owl:Class CHEBI:58413 biolink:NamedThing (R)-6-hydroxynicotinium monarch-merged.owl owl:Class CHEBI:58432 biolink:NamedThing histaminium An ammonium ion that is the conjugate acid of histamine protonated on the side-chain nitrogen. monarch-merged.owl 2-(1H-imidazol-4-yl)ethanaminium|histaminium cation|histamine +1 C5H10N3 InChI=1S/C5H9N3/c6-2-1-5-3-7-4-8-5/h3-4H,1-2,6H2,(H,7,8)/p+1 NTYJJOPFIAHURM-UHFFFAOYSA-O 112.15300 112.08692 [NH3+]CCc1c[nH]cn1 chebi_ontology owl:Class CHEBI:58446 biolink:NamedThing 13-hydroxylupaninium monarch-merged.owl owl:Class CHEBI:58460 biolink:NamedThing 13-(2-methylcrotonoyloxy)lupaninium monarch-merged.owl owl:Class CHEBI:58463 biolink:NamedThing (7S)-salutaridinol(1+) monarch-merged.owl owl:Class CHEBI:58473 biolink:NamedThing codeinone(1+) monarch-merged.owl owl:Class CHEBI:58481 biolink:NamedThing (RS)-coclaurinium monarch-merged.owl owl:Class CHEBI:58482 biolink:NamedThing (RS)-norcoclaurinium monarch-merged.owl owl:Class CHEBI:58495 biolink:NamedThing (2S)-2-carbamoylpyrrolidin-1-ium monarch-merged.owl owl:Class CHEBI:58500 biolink:NamedThing 7,8-diaminononanoate cation monarch-merged.owl owl:Class CHEBI:58530 biolink:NamedThing gentamycin C1a(5+) monarch-merged.owl owl:Class CHEBI:58535 biolink:NamedThing N(8)-acetylspermidinium(2+) monarch-merged.owl owl:Class CHEBI:58550 biolink:NamedThing N(1),N(12)-diacetylsperminium(2+) monarch-merged.owl owl:Class CHEBI:58552 biolink:NamedThing N(2')-acetylgentamycin C1a(4+) monarch-merged.owl owl:Class CHEBI:58567 biolink:NamedThing ajmalinium monarch-merged.owl owl:Class CHEBI:58600 biolink:NamedThing N(tele)-methylhistaminium monarch-merged.owl owl:Class CHEBI:58606 biolink:NamedThing synephrinium monarch-merged.owl owl:Class CHEBI:58609 biolink:NamedThing D-2-ammoniohexano-6-lactam monarch-merged.owl owl:Class CHEBI:58611 biolink:NamedThing (+-)-5-[3-(tert-butylammonio)-2-hydroxypropoxy]-1,2,3,4-tetrahydro-1-naphthol(1+) monarch-merged.owl owl:Class CHEBI:58612 biolink:NamedThing (+-)-5-[3-(tert-butylammonio)-2-hydroxypropoxy]-3,4-dihydronaphthalen-1(2H)-one(1+) monarch-merged.owl owl:Class CHEBI:58633 biolink:NamedThing L-homoserine lactone(1+) monarch-merged.owl owl:Class CHEBI:58661 biolink:NamedThing trypanothione disulfide(1+) monarch-merged.owl owl:Class CHEBI:58679 biolink:NamedThing 17-O-acetylajmalinium monarch-merged.owl owl:Class CHEBI:58682 biolink:NamedThing 6-hydroxypseudooxynicotinium(1+) monarch-merged.owl owl:Class CHEBI:58700 biolink:NamedThing 6-(alpha-D-glucosazaniumyl)-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:58703 biolink:NamedThing 7-ammoniomethyl-7-deazaguanine monarch-merged.owl owl:Class CHEBI:58704 biolink:NamedThing 3,3,3-tetraminium(4+) monarch-merged.owl owl:Class CHEBI:58723 biolink:NamedThing 2-ammonio-2-deoxy-D-glucopyranose monarch-merged.owl owl:Class CHEBI:58732 biolink:NamedThing N-[(E)-4-ammoniobutylidene]propane-1,3-diaminium monarch-merged.owl owl:Class CHEBI:58858 biolink:NamedThing N-(3-acetamidopropyl)-4-ammoniobutanal monarch-merged.owl owl:Class CHEBI:58869 biolink:NamedThing N-(3-ammoniopropyl)-4-ammoniobutanal monarch-merged.owl owl:Class CHEBI:58886 biolink:NamedThing 1D-myo-inositol 2-ammonio-2-deoxy-alpha-D-glucopyranoside monarch-merged.owl owl:Class CHEBI:58887 biolink:NamedThing 1D-myo-inositol 2-(L-cysteiniumylamino)-2-deoxy-alpha-D-glucopyranoside monarch-merged.owl owl:Class CHEBI:58906 biolink:NamedThing sphingosine-1-phosphocholine(1+) monarch-merged.owl owl:Class CHEBI:58916 biolink:NamedThing (R)-piperazin-4-ium-2-carboxamide(1+) monarch-merged.owl owl:Class CHEBI:58919 biolink:NamedThing (S)-piperazin-4-ium-2-carboxamide(1+) monarch-merged.owl owl:Class CHEBI:58930 biolink:NamedThing 16-methoxytabersoninium(1+) monarch-merged.owl owl:Class CHEBI:59338 biolink:NamedThing methylammonium monarch-merged.owl owl:Class CHEBI:59806 biolink:NamedThing (S)-nicotinium(1+) The conjugate acid of (S)-nicotine arising from selective protonation of the tertiary amino group; major species at pH 7.3. monarch-merged.owl (2S)-1-methyl-2-(pyridin-3-yl)pyrrolidinium|(S)-nicotinium cation|(S)-nicotine +1 C10H15N2 InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/p+1/t10-/m0/s1 SNICXCGAKADSCV-JTQLQIEISA-O 163.23900 163.12297 C[NH+]1CCC[C@H]1c1cccnc1 MetaCyc:NICOTINE|Gmelin:329042 chebi_ontology owl:Class CHEBI:59903 biolink:NamedThing thermosperminium(4+) monarch-merged.owl owl:Class CHEBI:59905 biolink:NamedThing dopaminium(1+) An ammonium ion that is the conjugate acid of dopamine; major species at pH 7.3. monarch-merged.owl 2-(3,4-dihydroxyphenyl)ethan-1-aminium|dopamine|2-(3,4-dihydroxyphenyl)ethanaminium|dopaminium cation +1 C8H12NO2 InChI=1S/C8H11NO2/c9-4-3-6-1-2-7(10)8(11)5-6/h1-2,5,10-11H,3-4,9H2/p+1 VYFYYTLLBUKUHU-UHFFFAOYSA-O 154.18640 154.08626 [NH3+]CCc1ccc(O)c(O)c1 Gmelin:328863 chebi_ontology owl:Class CHEBI:59908 biolink:NamedThing ecgoninium methyl ester(1+) monarch-merged.owl owl:Class CHEBI:59910 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->4)-D-glucosaminium(1+) monarch-merged.owl owl:Class CHEBI:59917 biolink:NamedThing 4-O-phosphohygromycin B(1+) monarch-merged.owl owl:Class CHEBI:59950 biolink:NamedThing neopinone(1+) monarch-merged.owl owl:Class CHEBI:59953 biolink:NamedThing thebaine(1+) monarch-merged.owl owl:Class CHEBI:60056 biolink:NamedThing cocaine(1+) The conjugate base of cocaine arising from protonation of the tertiary amino group; major species at pH 7.3. monarch-merged.owl (1R,2R,3S,5S)-3-(benzoyloxy)-2-(methoxycarbonyl)-8-methyl-8-azoniabicyclo[3.2.1]octane|cocaine|cocaine cation owl:Class CHEBI:60082 biolink:NamedThing vinca alkaloid cation monarch-merged.owl owl:Class CHEBI:60118 biolink:NamedThing (R)-nipecotamide(1+) monarch-merged.owl owl:Class CHEBI:60254 biolink:NamedThing (3R)-3-(tert-butylcarbamoyl)piperazin-1-ium monarch-merged.owl owl:Class CHEBI:61269 biolink:NamedThing scopolamine(1+) monarch-merged.owl owl:Class CHEBI:61938 biolink:NamedThing gamma-carboxy-L-glutamic acid zwitterion(2-) monarch-merged.owl owl:Class CHEBI:62214 biolink:NamedThing 5-hydroxykynurenaminium(1+) monarch-merged.owl owl:Class CHEBI:62495 biolink:NamedThing D-glucosylsphingosine(1+) An ammonium ion that is obtained by protonation of the amino group of D-glucosylsphingosine. Major species at pH 7.3. monarch-merged.owl (2S,3R,4E)-1-(D-glucopyranosyloxy)-3-hydroxyoctadec-4-en-2-aminium +1 C24H48NO7 InChI=1S/C24H47NO7/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(27)18(25)17-31-24-23(30)22(29)21(28)20(16-26)32-24/h14-15,18-24,26-30H,2-13,16-17,25H2,1H3/p+1/b15-14+/t18-,19+,20+,21+,22-,23+,24?/m0/s1 HHJTWTPUPVQKNA-WNCZHHJSSA-O 462.64040 462.34253 CCCCCCCCCCCCC\C=C\[C@@H](O)[C@@H]([NH3+])COC1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O PMID:10951276|PMID:19443184|PMID:10970788|PMID:12649340 chebi_ontology owl:Class CHEBI:62526 biolink:NamedThing (2S,3S,5R,10R,12S,14S,15R,16R)-2-amino-12,16-dimethylicosane-3,5,10,14,15-pentol(1+) monarch-merged.owl owl:Class CHEBI:62554 biolink:NamedThing fumonisin B1(3-) monarch-merged.owl owl:Class CHEBI:62745 biolink:NamedThing ammoniodiacetate monarch-merged.owl owl:Class CHEBI:63307 biolink:NamedThing 10-deoxymethymycin(1+) monarch-merged.owl owl:Class CHEBI:63416 biolink:NamedThing 4-amino-5-ammoniomethyl-2-methylpyrimidine monarch-merged.owl owl:Class CHEBI:65015 biolink:NamedThing paromamine(3+) monarch-merged.owl owl:Class CHEBI:65016 biolink:NamedThing 6'-oxoparomamine(3+) monarch-merged.owl owl:Class CHEBI:65042 biolink:NamedThing agroclavine(1+) monarch-merged.owl owl:Class CHEBI:85006 biolink:NamedThing N(1),N(8)-bis(sinapoyl)-spermidine(1+) monarch-merged.owl owl:Class CHEBI:90869 biolink:NamedThing validamycin A(1+) monarch-merged.owl owl:Class CHEBI:111509 biolink:NamedThing alpha-L-colitosyl-(1->2)-beta-D-galactosyl-(1->3)-N-acetyl-D-glucosamine monarch-merged.owl owl:Class CHEBI:22485 biolink:NamedThing glucosamine oligosaccharide monarch-merged.owl owl:Class CHEBI:154293 biolink:NamedThing alpha-D-GlcpNAc-(1->4)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:17725 biolink:NamedThing alpha-N-acetylneuraminyl-(2->6)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosamine monarch-merged.owl owl:Class CHEBI:18217 biolink:NamedThing alpha-D-Gal-(1->3)-beta-D-Gal-(1->4)-D-GlcNAc monarch-merged.owl owl:Class CHEBI:27707 biolink:NamedThing beta-D-Galp-(1->3)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:29111 biolink:NamedThing alpha-D-GlcpNAc-(1->2)-[alpha-D-Manp-(1->3)]-alpha-D-Manp-(1->2)-alpha-D-Manp-(1->2)-D-Manp monarch-merged.owl owl:Class CHEBI:30248 biolink:NamedThing beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc monarch-merged.owl owl:Class CHEBI:60152 biolink:NamedThing beta-D-Galp-(1->4)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:60239 biolink:NamedThing beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc monarch-merged.owl owl:Class CHEBI:61898 biolink:NamedThing alpha-D-Man-(1->3)-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:62259 biolink:NamedThing alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:62263 biolink:NamedThing alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:62265 biolink:NamedThing beta-D-Galp-(1->3)-[alpha-L-Fucp-(1->4)]-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:62287 biolink:NamedThing alpha-L-Fucp-(1->3)-[beta-D-Galp-(1->4)]-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:64897 biolink:NamedThing diacetylchitobiose-6'-phosphate monarch-merged.owl owl:Class CHEBI:71355 biolink:NamedThing beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:75397 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-alpha-D-mannose monarch-merged.owl owl:Class CHEBI:76821 biolink:NamedThing beta-D-Manp-(1->4)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:59266 biolink:NamedThing amino trisaccharide An amino oligosaccharide that is a trisaccharide having one or more substituted or unsubstituted amino groups in place of hydroxy groups at unspecified positions. monarch-merged.owl amino trisaccharides chebi_ontology owl:Class CHEBI:133503 biolink:NamedThing beta-D-GalpNAc-(1->4)-[alpha-Neup5Gc-(2->3)]-beta-D-Galp monarch-merged.owl owl:Class CHEBI:59226 biolink:NamedThing N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucose An amino trisaccharide that is the carbohydrate portion of ganglioside GM3. It comprises a linear sequence of alpha-N-acetylneuraminyl, beta-D-galactosyl and beta-D-glucose residues linked (2->3) and (1->4). monarch-merged.owl Neu5Aca2-3Galb1-4Glcb|a-Neu5Ac-(2->3)-b-D-Gal-(1->4)-D-Glc|3'-sialyllactose|3'-(N-Acetyl-alpha-neuraminosyl)lactose|(6R)-5-(acetylamino)-3,5-dideoxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]-beta-L-threo-hex-2-ulopyranonosyl-(2->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranose|3'-a-Sialyllactose|3'-Sialyl-delta-lactose|32-N-Acetyl-a-neuraminyllactose|N-Acetylneuraminoyllactose|WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2|alpha-Neu5Ac-(2->3)-beta-D-Gal-(->4)-D-Glc|Neu5Acalpha2-3Galbeta1-4Glcbeta|alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucose|3'-N-Acetylneuraminyl-delta-lactose|(2->3')-alpha-Sialyllactose|(2->3')-a-Sialyllactose|32-N-Acetyl-alpha-neuraminyllactose|3'-N-Acetylneuraminyl-D-lactose|5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl-(2->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranose|alpha-Neu5Ac-(2->3)-beta-delta-Gal-(1->4)-delta-Glc|GM3 carbohydrate moiety|3'-alpha-Sialyllactose|3'-Monosialyllactose|3'-Sialyl-D-lactose|alpha-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-beta-D-Glcp|alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-Glc|(2S,4S,5R,6R)-2-{[(2R,3S,4S,5R,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-{[(2R,3R,4R,5R)-1,2,4,5-tetrahydroxy-6-oxohexan-3-yl]oxy}oxan-4-yl]oxy}-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid|A2,3-Sialyllactose|3'-(N-Acetyl-a-neuraminosyl)lactose 0 C23H39NO19 InChI=1S/C23H39NO19/c1-6(28)24-11-7(29)2-23(22(37)38,42-18(11)12(31)8(30)3-25)43-19-13(32)9(4-26)40-21(16(19)35)41-17-10(5-27)39-20(36)15(34)14(17)33/h7-21,25-27,29-36H,2-5H2,1H3,(H,24,28)(H,37,38)/t7-,8+,9+,10+,11+,12+,13-,14+,15+,16+,17+,18+,19-,20+,21-,23-/m0/s1 CILYIEBUXJIHCO-UITFWXMXSA-N 633.55110 633.21163 CC(=O)N[C@@H]1[C@@H](O)C[C@@](O[C@H]2[C@@H](O)[C@@H](CO)O[C@@H](O[C@@H]3[C@@H](CO)O[C@@H](O)[C@H](O)[C@H]3O)[C@@H]2O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O PMID:599156|PMID:15179041|PMID:31537530|Reaxys:4632263|PMID:24027187|Beilstein:4632263|PMID:6672002|GlyGen:G91237TK|PMID:12058986|PMID:3142362|PMID:3768140|PMID:33164488|PMID:11164910|PMID:14613940|PMID:510308|PMID:25568069|PMID:19443021|PMID:7507746|GlyTouCan:G91237TK|PMID:7706301|HMDB:HMDB0000825|PMID:12950597 CHEBI:85038 chebi_ontology owl:Class CHEBI:63339 biolink:NamedThing deoxy oligosaccharide derivative monarch-merged.owl owl:Class CHEBI:111511 biolink:NamedThing (beta-D-glucopyranosyloxymethyl)deoxyuridine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:22798 biolink:NamedThing beta-D-glucoside monarch-merged.owl owl:Class CHEBI:13637 biolink:NamedThing flavanone 7-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:136876 biolink:NamedThing 1-(3,4-dihydroxybenzoyl)-beta-D-glucopyranose monarch-merged.owl owl:Class CHEBI:138975 biolink:NamedThing mogroside IE monarch-merged.owl owl:Class CHEBI:140278 biolink:NamedThing 5-hydroxyanthocyanin O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:140301 biolink:NamedThing 7-hydroxyisoflavones 7-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:140302 biolink:NamedThing beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:15411 biolink:NamedThing (-)-menthyl beta-D-glucoside monarch-merged.owl owl:Class CHEBI:15575 biolink:NamedThing nuatigenin 3-beta-D-glucopyranoside monarch-merged.owl owl:Class CHEBI:16063 biolink:NamedThing limonin 17-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:16065 biolink:NamedThing scopolin monarch-merged.owl owl:Class CHEBI:16267 biolink:NamedThing (R)-4-hydroxymandelonitrile beta-D-glucoside monarch-merged.owl owl:Class CHEBI:16441 biolink:NamedThing linamarin monarch-merged.owl owl:Class CHEBI:16603 biolink:NamedThing DIMBOA glucoside monarch-merged.owl owl:Class CHEBI:16700 biolink:NamedThing indican monarch-merged.owl owl:Class CHEBI:16741 biolink:NamedThing 4-(beta-D-glucosyloxy)benzoic acid monarch-merged.owl owl:Class CHEBI:16816 biolink:NamedThing flavonol 3-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:17074 biolink:NamedThing cycasin monarch-merged.owl owl:Class CHEBI:17155 biolink:NamedThing flavonol 3-O-(6-O-malonyl-beta-D-glucoside) monarch-merged.owl owl:Class CHEBI:17286 biolink:NamedThing deacetylisoipecoside monarch-merged.owl owl:Class CHEBI:17382 biolink:NamedThing 5'-O-beta-D-glucosylpyridoxine monarch-merged.owl owl:Class CHEBI:17400 biolink:NamedThing raucaffricine monarch-merged.owl owl:Class CHEBI:17559 biolink:NamedThing 3alpha(S)-strictosidine monarch-merged.owl owl:Class CHEBI:17770 biolink:NamedThing 1-hydroxy-2-(beta-D-glucosyloxy)-9,10-anthraquinone monarch-merged.owl owl:Class CHEBI:17989 biolink:NamedThing daphnin monarch-merged.owl owl:Class CHEBI:18002 biolink:NamedThing (-)-secologanin monarch-merged.owl owl:Class CHEBI:18106 biolink:NamedThing deacetylipecoside monarch-merged.owl owl:Class CHEBI:18305 biolink:NamedThing hydroquinone O-beta-D-glucopyranoside monarch-merged.owl owl:Class CHEBI:18370 biolink:NamedThing 7-deoxyloganin monarch-merged.owl owl:Class CHEBI:20346 biolink:NamedThing cinnamyl alcohol beta-D-glucoside monarch-merged.owl owl:Class CHEBI:2260 biolink:NamedThing 7-deoxyloganic acid monarch-merged.owl owl:Class CHEBI:24183 biolink:NamedThing galloyl beta-D-glucose monarch-merged.owl owl:Class CHEBI:25150 biolink:NamedThing prunasin monarch-merged.owl owl:Class CHEBI:27826 biolink:NamedThing (S)-4-hydroxymandelonitrile beta-D-glucoside monarch-merged.owl owl:Class CHEBI:27994 biolink:NamedThing luteolin 7-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:2807 biolink:NamedThing arbutin 6-phosphate monarch-merged.owl owl:Class CHEBI:28426 biolink:NamedThing cyanidin 3-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:28556 biolink:NamedThing biochanin A 7-O-(6-O-malonyl-beta-D-glucoside) monarch-merged.owl owl:Class CHEBI:28749 biolink:NamedThing aryl beta-D-glucoside monarch-merged.owl owl:Class CHEBI:2937 biolink:NamedThing avenacoside A monarch-merged.owl owl:Class CHEBI:2938 biolink:NamedThing avenacoside B monarch-merged.owl owl:Class CHEBI:30200 biolink:NamedThing kaempferol 3-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:31463 biolink:NamedThing delphinidin 3-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:31967 biolink:NamedThing pelargonidin 3-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:31969 biolink:NamedThing pelargonidin 3-O-rutinoside 5-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:36486 biolink:NamedThing 13-(beta-D-glucosyloxy)docosanoic acid monarch-merged.owl owl:Class CHEBI:37424 biolink:NamedThing sterol 3-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:38644 biolink:NamedThing O-beta-D-glucosylzeatins monarch-merged.owl owl:Class CHEBI:3978 biolink:NamedThing cyanin monarch-merged.owl owl:Class CHEBI:4911 biolink:NamedThing etoposide monarch-merged.owl owl:Class CHEBI:52076 biolink:NamedThing gibberellin A3 O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:52142 biolink:NamedThing flavonol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:52143 biolink:NamedThing flavonol 3-O-beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:52144 biolink:NamedThing flavonol 7-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:52268 biolink:NamedThing flavonol 3-O-[6-(4-coumaroyl)-beta-D-glucosyl-(1->2)-beta-D-glucosyl-(1->2)-beta-D-glucoside]s monarch-merged.owl owl:Class CHEBI:55334 biolink:NamedThing delphinidin 3-O-(6''-O-malonyl)-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:55335 biolink:NamedThing ternatin C5 monarch-merged.owl owl:Class CHEBI:55336 biolink:NamedThing delphinidin 3-O-(6''-O-malonyl)-beta-D-glucoside-3'-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:55455 biolink:NamedThing delphinidin 3-O-beta-D-glucoside-5-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:55456 biolink:NamedThing delphinidin 3,3',5-tri-O-glucoside monarch-merged.owl owl:Class CHEBI:55464 biolink:NamedThing 7-[beta-D-apiofuranosyl-(1->6)-beta-D-glucopyranosyloxy]isoflavone monarch-merged.owl owl:Class CHEBI:57626 biolink:NamedThing limonin 17-beta-D-glucoside(1-) monarch-merged.owl owl:Class CHEBI:61318 biolink:NamedThing cyanidin 3-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:61505 biolink:NamedThing cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:62251 biolink:NamedThing 2-(beta-D-glucosyloxy)-cis-cinnamic acid monarch-merged.owl owl:Class CHEBI:62765 biolink:NamedThing beta-D-glucosyl crocetin monarch-merged.owl owl:Class CHEBI:62768 biolink:NamedThing bis(beta-D-glucosyl) crocetin monarch-merged.owl owl:Class CHEBI:62771 biolink:NamedThing beta-D-gentiobiosyl beta-D-glucosyl crocetin monarch-merged.owl owl:Class CHEBI:63067 biolink:NamedThing zeaxanthin bis(beta-D-glucoside) monarch-merged.owl owl:Class CHEBI:63670 biolink:NamedThing DIBOA beta-D-glucoside monarch-merged.owl owl:Class CHEBI:63671 biolink:NamedThing TRIBOA beta-D-glucoside monarch-merged.owl owl:Class CHEBI:66904 biolink:NamedThing 2',3,4,4',6'-pentahydroxychalcone 4'-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:66905 biolink:NamedThing aureusidin 6-O-beta-glucoside monarch-merged.owl owl:Class CHEBI:66906 biolink:NamedThing 2',4,4',6'-tetrahydroxychalcone 4'-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:66907 biolink:NamedThing bracteatin 6-O-beta-glucoside monarch-merged.owl owl:Class CHEBI:67987 biolink:NamedThing ginsenoside Rg1 monarch-merged.owl owl:Class CHEBI:67988 biolink:NamedThing ginsenoside Rd monarch-merged.owl owl:Class CHEBI:71584 biolink:NamedThing cyanidin 3,7-di-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:71981 biolink:NamedThing beta-D-glucosylsphingosine monarch-merged.owl owl:Class CHEBI:77146 biolink:NamedThing ginsenoside C-K monarch-merged.owl owl:Class CHEBI:77148 biolink:NamedThing ginsenoside Re monarch-merged.owl owl:Class CHEBI:77149 biolink:NamedThing notoginsenoside R1 monarch-merged.owl owl:Class CHEBI:77150 biolink:NamedThing ginsenoside F1 monarch-merged.owl owl:Class CHEBI:77152 biolink:NamedThing ginsenoside Rb2 monarch-merged.owl owl:Class CHEBI:77156 biolink:NamedThing gypenoside LXXV monarch-merged.owl owl:Class CHEBI:77157 biolink:NamedThing ginsenoside C-Y monarch-merged.owl owl:Class CHEBI:83264 biolink:NamedThing beta-D-glucosylceramide monarch-merged.owl owl:Class CHEBI:83745 biolink:NamedThing validamycins monarch-merged.owl owl:Class CHEBI:36995 biolink:NamedThing pyrimidine 2'-deoxyribonucleoside 5'-monophosphate monarch-merged.owl owl:Class CHEBI:15245 biolink:NamedThing thymidine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:15918 biolink:NamedThing 2'-deoxycytosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:16764 biolink:NamedThing 2'-deoxy-5-methyl-5'-cytidylic acid monarch-merged.owl owl:Class CHEBI:16952 biolink:NamedThing 5-hydroxymethyldeoxycytidylic acid monarch-merged.owl owl:Class CHEBI:17622 biolink:NamedThing dUMP monarch-merged.owl owl:Class CHEBI:41929 biolink:NamedThing 2-deoxy-5-O-phosphono-beta-L-ribofuranosylcytosine monarch-merged.owl owl:Class CHEBI:42112 biolink:NamedThing 1-(2-deoxy-5-O-phosphono-beta-L-ribofuranosyl)thymine monarch-merged.owl owl:Class CHEBI:111519 biolink:NamedThing 2,3-dichloromuconic acid monarch-merged.owl owl:Class CHEBI:38422 biolink:NamedThing dichloromuconic acid monarch-merged.owl owl:Class CHEBI:38409 biolink:NamedThing 2,4-dichloromuconic acid monarch-merged.owl owl:Class CHEBI:38421 biolink:NamedThing 2,5-dichloromuconic acid monarch-merged.owl owl:Class CHEBI:11152 biolink:NamedThing 1,2-didecanoylglycerol monarch-merged.owl owl:Class CHEBI:49172 biolink:NamedThing 1,2-diglyceride monarch-merged.owl owl:Class CHEBI:17815 biolink:NamedThing 1,2-diacyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:52323 biolink:NamedThing 1,2-dioleoylglycerol monarch-merged.owl owl:Class CHEBI:75524 biolink:NamedThing 2,3-diacyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:75579 biolink:NamedThing 1-lauroyl-2-oleoylglycerol monarch-merged.owl owl:Class CHEBI:75582 biolink:NamedThing 1-myristoyl-2-oleoylglycerol monarch-merged.owl owl:Class CHEBI:75585 biolink:NamedThing 1-palmitoyl-2-oleoylglycerol monarch-merged.owl owl:Class CHEBI:75590 biolink:NamedThing 1-stearoyl-2-oleoylglycerol monarch-merged.owl owl:Class CHEBI:75609 biolink:NamedThing 1-alpha-linolenoyl-2-oleoylglycerol monarch-merged.owl owl:Class CHEBI:75611 biolink:NamedThing 1-arachidonoyl-2-oleoylglycerol monarch-merged.owl owl:Class CHEBI:75614 biolink:NamedThing 1-linoleoyl-2-oleoylglycerol monarch-merged.owl owl:Class CHEBI:76065 biolink:NamedThing 1-oleoyl-2-palmitoylglycerol monarch-merged.owl owl:Class CHEBI:78090 biolink:NamedThing 1,2-dipalmitoylglycerol monarch-merged.owl owl:Class CHEBI:85787 biolink:NamedThing 1-decanoyl-2-oleoylglycerol monarch-merged.owl owl:Class CHEBI:68830 biolink:NamedThing O-decanoylcarnitine monarch-merged.owl owl:Class CHEBI:75300 biolink:NamedThing 1-palmitoyl-2-decanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:77388 biolink:NamedThing tricaprin monarch-merged.owl owl:Class CHEBI:77679 biolink:NamedThing 1-hexadecyl-2-acetyl-3-decanoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:77726 biolink:NamedThing 1-decanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:78226 biolink:NamedThing 1,2-dicapryl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:78512 biolink:NamedThing 1-decanoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:79074 biolink:NamedThing 1,2-dicapryl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:90605 biolink:NamedThing monodecanoylglycerol monarch-merged.owl owl:Class CHEBI:33573 biolink:NamedThing tetrol monarch-merged.owl owl:Class CHEBI:111542 biolink:NamedThing validone monarch-merged.owl owl:Class CHEBI:137172 biolink:NamedThing prostaglandin E2 2-glyceryl ester monarch-merged.owl owl:Class CHEBI:137336 biolink:NamedThing 8-amino-8-demethylriboflavin monarch-merged.owl owl:Class CHEBI:137340 biolink:NamedThing 8-demethyl-8-(methylamino)riboflavin monarch-merged.owl owl:Class CHEBI:22706 biolink:NamedThing benzenetetrol monarch-merged.owl owl:Class CHEBI:44800 biolink:NamedThing (2R,4S)-2-methyltetrahydrofuran-2,3,3,4-tetrol monarch-merged.owl owl:Class CHEBI:90230 biolink:NamedThing prostaglandin E2 1-glyceryl ester monarch-merged.owl owl:Class CHEBI:90970 biolink:NamedThing 1alpha,23(S),25-trihydroxyvitamin D3 monarch-merged.owl owl:Class CHEBI:91307 biolink:NamedThing (20S,23,24)-trihydroxyvitamin D3 monarch-merged.owl owl:Class CHEBI:91308 biolink:NamedThing (20S,23,25)-trihydroxyvitamin D3 monarch-merged.owl owl:Class CHEBI:48953 biolink:NamedThing cyclohexenones monarch-merged.owl owl:Class CHEBI:48951 biolink:NamedThing cyclohexenone monarch-merged.owl owl:Class CHEBI:23451 biolink:NamedThing cyclitol A polyol consisting of a cycloalkane containing at least three hydroxy groups, each attached to a different ring carbon atom. monarch-merged.owl cyclitols chebi_ontology owl:Class CHEBI:22479 biolink:NamedThing amino cyclitol glycoside monarch-merged.owl owl:Class CHEBI:23450 biolink:NamedThing cyclitol phosphate monarch-merged.owl owl:Class CHEBI:25270 biolink:NamedThing methyl myo-inositols monarch-merged.owl owl:Class CHEBI:61689 biolink:NamedThing amino cyclitol monarch-merged.owl owl:Class CHEBI:84187 biolink:NamedThing 2-epi-5-epi-valiolone monarch-merged.owl owl:Class CHEBI:84361 biolink:NamedThing 5-epi-valiolone monarch-merged.owl owl:Class CHEBI:85367 biolink:NamedThing 2-epi-5-epi-valiolone 7-phosphate monarch-merged.owl owl:Class CHEBI:87447 biolink:NamedThing 5-epi-valiolone 7-phosphate monarch-merged.owl owl:Class CHEBI:24693 biolink:NamedThing hydroxycyclohexanone monarch-merged.owl owl:Class CHEBI:16145 biolink:NamedThing 3,5/4-trihydroxycyclohexane-1,2-dione monarch-merged.owl owl:Class CHEBI:17611 biolink:NamedThing 3-hydroxycyclohexanone monarch-merged.owl owl:Class CHEBI:25881 biolink:NamedThing pentahydroxycyclohexanone monarch-merged.owl owl:Class CHEBI:64809 biolink:NamedThing tetrahydroxycyclohexanone monarch-merged.owl owl:Class CHEBI:65029 biolink:NamedThing trihydroxycyclohexanone monarch-merged.owl owl:Class CHEBI:86399 biolink:NamedThing (4R,6R)-hydroxy-2,2,6-trimethylcyclohexanone monarch-merged.owl owl:Class CHEBI:111544 biolink:NamedThing 2'-hydroxyrifampicin monarch-merged.owl owl:Class CHEBI:26580 biolink:NamedThing rifamycins monarch-merged.owl owl:Class CHEBI:140276 biolink:NamedThing 21-phosphorifampicin monarch-merged.owl owl:Class CHEBI:16324 biolink:NamedThing rifamycin O monarch-merged.owl owl:Class CHEBI:17876 biolink:NamedThing rifamycin B monarch-merged.owl owl:Class CHEBI:28077 biolink:NamedThing rifampicin monarch-merged.owl owl:Class CHEBI:29673 biolink:NamedThing rifamycin SV monarch-merged.owl owl:Class CHEBI:34311 biolink:NamedThing 27-O-demethylrifamycin SV monarch-merged.owl owl:Class CHEBI:111763 biolink:NamedThing N-demethylindolmycin monarch-merged.owl owl:Class CHEBI:24828 biolink:NamedThing indoles Any compound containing an indole skeleton. monarch-merged.owl chebi_ontology owl:Class CHEBI:132244 biolink:NamedThing (E)-3-(indol-3-yl)acrylic acid monarch-merged.owl owl:Class CHEBI:136433 biolink:NamedThing 2,5-diimino-3,4-bis(indol-3-yl)hexanedioic acid monarch-merged.owl owl:Class CHEBI:136445 biolink:NamedThing 1-aci-nitro-2-(1H-indol-3-yl)ethane monarch-merged.owl owl:Class CHEBI:137211 biolink:NamedThing (E)-2-(indol-3-yl)-1-thioacetohydroximic acid monarch-merged.owl owl:Class CHEBI:137265 biolink:NamedThing (E)-1-(glutathion-S-yl)-2-(indol-3-yl)acetohydroximate monarch-merged.owl owl:Class CHEBI:137672 biolink:NamedThing S-[(E)-N-hydroxy-2-(indol-3-yl)ethanimidoyl]-L-cysteinylglycine monarch-merged.owl owl:Class CHEBI:137676 biolink:NamedThing Cys(IAN)-Gly monarch-merged.owl owl:Class CHEBI:140439 biolink:NamedThing 3-geranyl-3-[(Z)-2-isocyanovinyl]-3H-indole monarch-merged.owl owl:Class CHEBI:144370 biolink:NamedThing 3-(2-isocyanovinyl)indole monarch-merged.owl owl:Class CHEBI:15711 biolink:NamedThing 1D-1-O-(indol-3-yl)acetyl-myo-inositol monarch-merged.owl owl:Class CHEBI:16031 biolink:NamedThing indole-3-acetamide monarch-merged.owl owl:Class CHEBI:17073 biolink:NamedThing Cypridina luciferin monarch-merged.owl owl:Class CHEBI:17566 biolink:NamedThing indole-3-acetonitrile monarch-merged.owl owl:Class CHEBI:24797 biolink:NamedThing indole phytoalexin monarch-merged.owl owl:Class CHEBI:24821 biolink:NamedThing indolyl carbohydrate monarch-merged.owl owl:Class CHEBI:24823 biolink:NamedThing indoleacetaldehyde monarch-merged.owl owl:Class CHEBI:27162 biolink:NamedThing tryptamines Tryptamine and its substitution derivatives. monarch-merged.owl chebi_ontology owl:Class CHEBI:28311 biolink:NamedThing indol-3-ylacetaldehyde oxime monarch-merged.owl owl:Class CHEBI:35581 biolink:NamedThing indole monarch-merged.owl owl:Class CHEBI:38460 biolink:NamedThing methylindole monarch-merged.owl owl:Class CHEBI:38615 biolink:NamedThing cyclopiazonic acid monarch-merged.owl owl:Class CHEBI:38631 biolink:NamedThing aminoalkylindole monarch-merged.owl aminoalkylindoles CHEBI:22503|CHEBI:24792 chebi_ontology owl:Class CHEBI:41625 biolink:NamedThing chromopyrrolic acid monarch-merged.owl owl:Class CHEBI:46867 biolink:NamedThing indolyl carboxylic acid monarch-merged.owl indolyl carboxylic acids chebi_ontology owl:Class CHEBI:46939 biolink:NamedThing indolyl carboxylate ester monarch-merged.owl owl:Class CHEBI:50395 biolink:NamedThing indolamine monarch-merged.owl indolamine 0 C8H8N2 132.163 132.06875 chebi_ontology owl:Class CHEBI:52507 biolink:NamedThing haloindole monarch-merged.owl owl:Class CHEBI:64530 biolink:NamedThing brevianamide F monarch-merged.owl owl:Class CHEBI:64550 biolink:NamedThing fumiquinazoline F monarch-merged.owl owl:Class CHEBI:64631 biolink:NamedThing indoleacetic acid conjugate monarch-merged.owl owl:Class CHEBI:64980 biolink:NamedThing gammaGluCys(IAN)Gly monarch-merged.owl owl:Class CHEBI:64988 biolink:NamedThing L-Cys(IAN) monarch-merged.owl owl:Class CHEBI:72760 biolink:NamedThing tryprostatin B monarch-merged.owl owl:Class CHEBI:72761 biolink:NamedThing tryprostatin A monarch-merged.owl owl:Class CHEBI:72762 biolink:NamedThing 6-hydroxytryprostatin B monarch-merged.owl owl:Class CHEBI:72782 biolink:NamedThing methyl (indol-3-yl)acetate monarch-merged.owl owl:Class CHEBI:72948 biolink:NamedThing deoxybrevianamide E monarch-merged.owl owl:Class CHEBI:75884 biolink:NamedThing N-acylindole monarch-merged.owl owl:Class CHEBI:79394 biolink:NamedThing indolmycin monarch-merged.owl owl:Class CHEBI:84729 biolink:NamedThing hydroxyindoles Any member of the class of indoles carrying at least one hydroxy group. monarch-merged.owl chebi_ontology owl:Class CHEBI:90891 biolink:NamedThing 2-imino-3-(indol-3-yl)propanoic acid monarch-merged.owl owl:Class CHEBI:90904 biolink:NamedThing asperlicin C monarch-merged.owl owl:Class CHEBI:46812 biolink:NamedThing 1,3-oxazoles monarch-merged.owl owl:Class CHEBI:9973 biolink:NamedThing vibriobactin monarch-merged.owl owl:Class CHEBI:50994 biolink:NamedThing primary amino compound A compound formally derived from ammonia by replacing one hydrogen atom by an organyl group. monarch-merged.owl primary amino compounds chebi_ontology owl:Class CHEBI:136675 biolink:NamedThing (S)-(1-aminoethyl)phosphonic acid monarch-merged.owl owl:Class CHEBI:139217 biolink:NamedThing 4-hydroxytryptamine monarch-merged.owl owl:Class CHEBI:139479 biolink:NamedThing norbaeocystin monarch-merged.owl owl:Class CHEBI:142938 biolink:NamedThing gentamycin 2''-phosphate monarch-merged.owl owl:Class CHEBI:15573 biolink:NamedThing (2-aminoethyl)phosphonic acid monarch-merged.owl owl:Class CHEBI:15760 biolink:NamedThing tyramine monarch-merged.owl owl:Class CHEBI:16696 biolink:NamedThing 3-methylthiopropylamine monarch-merged.owl owl:Class CHEBI:17431 biolink:NamedThing agmatine monarch-merged.owl owl:Class CHEBI:17553 biolink:NamedThing O-phosphoethanolamine The ethanolamine mono-ester of phosphoric acid, and a metabolite of phospholipid metabolism. This phosphomonoester shows strong structural similarity to the inhibitory neurotransmitter GABA, and is decreased in post-mortem Alzheimer's disease brain. monarch-merged.owl 2-aminoethyl dihydrogen phosphate|Phosphoethanolamine|OPE|pEtN|ethanolamine O-phosphate|O-Phosphorylethanolamine|O-Phosphoethanolamine|EAP|O-phosphocolamine|2-amino-ethanol phosphate|PEA|colamine phosphate|2-amino-ethanol dihydrogen phosphate|Ethanolamine phosphate|PE|colamine phosphoric acid|ethanolamine acid phosphate|phosphoryl-ethanolamine|mono(2-aminoethyl) phosphate|phosphoric acid 2-aminoethyl phenyl ester|monoaminoethyl phosphate|PETN|colaminphosphoric acid 0 C2H8NO4P InChI=1S/C2H8NO4P/c3-1-2-7-8(4,5)6/h1-3H2,(H2,4,5,6) SUHOOTKUPISOBE-UHFFFAOYSA-N 141.06302 141.01909 NCCOP(O)(O)=O DrugBank:DB01738|Reaxys:1758916|Gmelin:663022|KEGG:C00346|CAS:1071-23-4|PMID:7791524|Beilstein:1758916|PMID:1112054|PDBeChem:OPE|MetaCyc:PHOSPHORYL-ETHANOLAMINE CHEBI:14814|CHEBI:23980|CHEBI:4881|CHEBI:12694|CHEBI:14224|CHEBI:44681 chebi_ontology owl:Class CHEBI:23503 biolink:NamedThing 4-amino-1,2-oxazolidin-3-one monarch-merged.owl owl:Class CHEBI:24990 biolink:NamedThing kynurenamines monarch-merged.owl owl:Class CHEBI:27390 biolink:NamedThing omega-aminoaldehyde monarch-merged.owl owl:Class CHEBI:28790 biolink:NamedThing serotonin A primary amino compound that is the 5-hydroxy derivative of tryptamine. monarch-merged.owl 3-(2-Aminoethyl)-1H-indol-5-ol|thrombocytin|5-HT|Serotonin|serotonine|Enteramine|thrombotonin|5-Hydroxytryptamine|3-(2-aminoethyl)-1H-indol-5-ol|SEROTONIN 0 C10H12N2O InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2 QZAYGJVTTNCVMB-UHFFFAOYSA-N 176.215 176.09496 C1=CC(=CC=2C(=CNC12)CCN)O Beilstein:143524|PMID:24136337|LINCS:LSM-6589|Wikipedia:Serotonin|Gmelin:1861995|KNApSAcK:C00001429|MetaCyc:SEROTONIN|CAS:50-67-9|KEGG:C00780|PMID:18593914|Reaxys:143524|PMID:22770225|HMDB:HMDB0000259|PDBeChem:SRO CHEBI:49894|CHEBI:1420|CHEBI:26652 chebi_ontology owl:Class CHEBI:32877 biolink:NamedThing primary amine A compound formally derived from ammonia by replacing one hydrogen atom by a hydrocarbyl group. monarch-merged.owl Primary monoamine|RCH2NH2|primary amines|primaeres Amin|Primary amine|R-NH2 0 H2NR 16.02260 16.01872 N[*] KEGG:C02580|KEGG:C00375|KEGG:C00893 CHEBI:8409|CHEBI:26265|CHEBI:26263|CHEBI:8407 chebi_ontology owl:Class CHEBI:35414 biolink:NamedThing N-monoacetylalkane-alpha,omega-diamine monarch-merged.owl owl:Class CHEBI:40235 biolink:NamedThing 9H-purine-2,6-diamine monarch-merged.owl owl:Class CHEBI:4075 biolink:NamedThing (R)-(1-aminoethyl)phosphonic acid monarch-merged.owl owl:Class CHEBI:46209 biolink:NamedThing L-tyrosinal An amino aldehyde that is L-tyrosine in which the carboxy group has undergone formal redution to give the corrresponding aldehyde monarch-merged.owl TYROSINAL|(2S)-2-amino-3-(p-hydroxyphenyl)propanal|(2S)-2-amino-3-(4-hydroxyphenyl)propanal|L-tyr aldehyde 0 C9H11NO2 InChI=1S/C9H11NO2/c10-8(6-11)5-7-1-3-9(12)4-2-7/h1-4,6,8,12H,5,10H2/t8-/m0/s1 DXGAIOIQACHYRK-QMMMGPOBSA-N 165.189 165.07898 O=C[C@@H](N)CC=1C=CC(=CC1)O PMID:23281040|PDBeChem:TYB|MetaCyc:CPD-21526 CHEBI:46188 chebi_ontology owl:Class CHEBI:60312 biolink:NamedThing 2-amino-2-deoxy-D-galactopyranose monarch-merged.owl owl:Class CHEBI:62519 biolink:NamedThing (2S,3S,5R,10R,12S,14S,15R,16R)-2-amino-12,16-dimethylicosane-3,5,10,14,15-pentol monarch-merged.owl owl:Class CHEBI:63250 biolink:NamedThing (Z)-2-methyl-3-aminoperacrylic acid monarch-merged.owl owl:Class CHEBI:63862 biolink:NamedThing 3'-N-debenzoyltaxol monarch-merged.owl owl:Class CHEBI:64859 biolink:NamedThing N(alpha)-acetyl-L-lysine methyl ester monarch-merged.owl owl:Class CHEBI:65027 biolink:NamedThing 3-amino-2,3-dideoxy-scyllo-inosose monarch-merged.owl owl:Class CHEBI:7035 biolink:NamedThing muscimol A member of the class of isoxazoles that is 1,2-oxazol-3(2H)-one substituted by an aminomethyl group at position 5. It has been isolated from mushrooms of the genus Amanita. monarch-merged.owl 5-(aminomethyl)-3(2H)-isoxazolone|5-(aminomethyl)-1,2-oxazol-3(2H)-one|Muscimol 0 C4H6N2O2 InChI=1S/C4H6N2O2/c5-2-3-1-4(7)6-8-3/h1H,2,5H2,(H,6,7) ZJQHPWUVQPJPQT-UHFFFAOYSA-N 114.10260 114.04293 NCc1cc(=O)[nH]o1 KNApSAcK:C00001423|Reaxys:774694|Wikipedia:Muscimol|PMID:22049436|PMID:24259680|PMID:2181052|PMID:21751026|PMID:24473816|PMID:18599311|PMID:24316475|CAS:2763-96-4|KEGG:C08311|PMID:21427702|Beilstein:774694 chebi_ontology owl:Class CHEBI:74030 biolink:NamedThing 3'-N-debenzoyl-2'-deoxytaxol monarch-merged.owl owl:Class CHEBI:74951 biolink:NamedThing cysteamine S-phosphate monarch-merged.owl owl:Class CHEBI:75051 biolink:NamedThing 2-amino-5-chlorophenol monarch-merged.owl owl:Class CHEBI:77398 biolink:NamedThing 2-amino-2-phenylacetonitrile monarch-merged.owl owl:Class CHEBI:77400 biolink:NamedThing 2-aminopentanenitrile monarch-merged.owl owl:Class CHEBI:78741 biolink:NamedThing oxidopamine monarch-merged.owl owl:Class CHEBI:83546 biolink:NamedThing caldopentamine monarch-merged.owl owl:Class CHEBI:83547 biolink:NamedThing N(4)-aminopropylspermidine monarch-merged.owl owl:Class CHEBI:83554 biolink:NamedThing N(4)-aminopropylspermine monarch-merged.owl owl:Class CHEBI:84217 biolink:NamedThing [5-(aminomethyl)-3-furyl]methyl phosphate monarch-merged.owl owl:Class CHEBI:88247 biolink:NamedThing [5-(aminomethyl)-3-furyl]methyl diphosphate monarch-merged.owl owl:Class CHEBI:88248 biolink:NamedThing (4-{4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine monarch-merged.owl owl:Class CHEBI:88824 biolink:NamedThing N-acetylcadaverine monarch-merged.owl owl:Class CHEBI:112106 biolink:NamedThing (R)-3-(indol-3-yl)-2-oxobutyric acid monarch-merged.owl owl:Class CHEBI:16083 biolink:NamedThing (S)-3-(indol-3-yl)-2-oxobutyric acid monarch-merged.owl owl:Class CHEBI:11222 biolink:NamedThing 1-[(4-amino-2-methylpyrimidin-5-yl)methyl]pyridinium monarch-merged.owl owl:Class CHEBI:38188 biolink:NamedThing pyridinium salt monarch-merged.owl owl:Class CHEBI:38338 biolink:NamedThing aminopyrimidine A member of the class of pyrimidines that is pyrimidine substituted by at least one amino group and its derivatives. monarch-merged.owl aminopyrimidines chebi_ontology owl:Class CHEBI:11515 biolink:NamedThing 2-amino-5-formylamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphate monarch-merged.owl owl:Class CHEBI:134207 biolink:NamedThing methylcytosine monarch-merged.owl chebi_ontology owl:Class CHEBI:137796 biolink:NamedThing 2,5,6-triamino-4-hydroxypyrimidine monarch-merged.owl owl:Class CHEBI:16040 biolink:NamedThing cytosine An aminopyrimidine that is pyrimidin-2-one having the amino group located at position 4. monarch-merged.owl 4-amino-2-hydroxypyrimidine|4-aminopyrimidin-2(1H)-one|C|Zytosin|cytosine|Cyt|Cytosine|Cytosin|4-amino-2(1H)-pyrimidinone 0 C4H5N3O InChI=1S/C4H5N3O/c5-3-1-2-6-4(8)7-3/h1-2H,(H3,5,6,7,8) OPTASPLRGRRNAP-UHFFFAOYSA-N 111.10212 111.04326 Nc1cc[nH]c(=O)n1 KEGG:C00380|HMDB:HMDB0000630|PMID:7877593|MetaCyc:CYTOSINE|PMID:22770225|Wikipedia:Cytosine|PDBeChem:CYT|KNApSAcK:C00001498|Reaxys:2637|Gmelin:82472|Beilstein:2637|PMID:14253484|CAS:71-30-7 CHEBI:23531|CHEBI:41732|CHEBI:4072|CHEBI:14066 chebi_ontology owl:Class CHEBI:16629 biolink:NamedThing 4-amino-2-methyl-5-diphosphooxymethylpyrimidine monarch-merged.owl owl:Class CHEBI:16892 biolink:NamedThing 4-amino-5-hydroxymethyl-2-methylpyrimidine monarch-merged.owl owl:Class CHEBI:18032 biolink:NamedThing 4-amino-2-methyl-5-phosphooxymethylpyrimidine monarch-merged.owl owl:Class CHEBI:22532 biolink:NamedThing aminouracil monarch-merged.owl owl:Class CHEBI:26945 biolink:NamedThing thiamine phosphate monarch-merged.owl owl:Class CHEBI:26948 biolink:NamedThing vitamin B1 Any member of the group of 1,3-thiazolium cations that exhibit biological activity against vitamin B1 deficiency in animals. Symptoms of vitamin B1 deficiency include constipation, loss of apetite, fatigue, nausea, delirium, blurry vision and muscle weakness. Severe vitamin B1 deficiency can also lead to a disease known as beriberi. Vitamin B1 consists of the vitamer thiamin and its acid, aldehyde and phosphorylated derivatives (and their corresponding ionized, salt and hydrate forms). monarch-merged.owl thiamins|vitamin B1 vitamers|thiamines|vitamin B1 vitamer|vitamins B1|thiamine|vitamin B1 PMID:32554808|PMID:28859374 chebi_ontology owl:Class CHEBI:29114 biolink:NamedThing 2,5-diamino-4-hydroxy-6-(5-phosphoribosylamino)pyrimidine monarch-merged.owl owl:Class CHEBI:44219 biolink:NamedThing (4-amino-2-methylpyrimidin-5-yl)methyl dihydrogen phosphate monarch-merged.owl owl:Class CHEBI:44549 biolink:NamedThing 4-amino-5-aminomethyl-2-methylpyrimidine monarch-merged.owl owl:Class CHEBI:52402 biolink:NamedThing 2,5-diamino-6-(5-phosphono)ribitylamino-4(3H)-pyrimidinone monarch-merged.owl owl:Class CHEBI:59546 biolink:NamedThing 2,5-diamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphate monarch-merged.owl owl:Class CHEBI:76792 biolink:NamedThing 5-(hydroxymethyl)cytosine A nucleobase analogue that is cytosine in which the hydrogen at position 5 is replaced by a hydroxymethyl group. monarch-merged.owl 4-Amino-5-(hydroxymethyl)-2(1H)-pyrimidinone|4-amino-5-(hydroxymethyl)pyrimidin-2(1H)-one|5-hydroxymethylcytosine 0 C5H7N3O2 InChI=1S/C5H7N3O2/c6-4-3(2-9)1-7-5(10)8-4/h1,9H,2H2,(H3,6,7,8,10) RYVNIFSIEDRLSJ-UHFFFAOYSA-N 141.12800 141.05383 Nc1nc(=O)[nH]cc1CO MetaCyc:CPD-15531|PMID:21151123|PMID:24315686|PMID:19372391|PMID:21778364|PMID:24400731|PMID:26851753|PMID:27001475|Reaxys:125478|CAS:1123-95-1|PMID:26753520|PMID:24162071|PMID:24162993|Wikipedia:5-Hydroxymethylcytosine|PMID:24295785|PMID:26715454|PMID:24390216 chebi_ontology owl:Class CHEBI:85895 biolink:NamedThing 4-amino-5-formamidomethyl-2-methylpyrimidine monarch-merged.owl owl:Class CHEBI:11230 biolink:NamedThing 1-acylglycerophosphocholine(1+) monarch-merged.owl owl:Class CHEBI:60479 biolink:NamedThing lysophosphatidylcholine An acylglycerophosphocholine resulting from partial hydrolysis of a phosphatidylcholine, which removes one of the fatty acyl groups. The structure is depicted in the image where R1 = acyl, R2 = H or where R1 = H, R2 = acyl. monarch-merged.owl lysophosphatidylcholines|monoacylglycero-3-phosphocholine 0 C9H19NO7PR 255.206 255.08717 [C@](CO*)(O*)([H])COP(OCC[N+](C)(C)C)(=O)[O-] chebi_ontology owl:Class CHEBI:11502 biolink:NamedThing 2-acylglycerophosphocholine monarch-merged.owl owl:Class CHEBI:17504 biolink:NamedThing 1-O-acyl-sn-glycero-3-phosphocholine(1+) monarch-merged.owl owl:Class CHEBI:64483 biolink:NamedThing lysophosphatidylcholine 14:0 monarch-merged.owl owl:Class CHEBI:64549 biolink:NamedThing lysophosphatidylcholine 18:2 monarch-merged.owl owl:Class CHEBI:64560 biolink:NamedThing lysophosphatidylcholine 16:1 monarch-merged.owl owl:Class CHEBI:64561 biolink:NamedThing lysophosphatidylcholine 18:0 monarch-merged.owl owl:Class CHEBI:64563 biolink:NamedThing lysophosphatidylcholine 16:0 monarch-merged.owl owl:Class CHEBI:64565 biolink:NamedThing lysophosphatidylcholine 18:3 monarch-merged.owl owl:Class CHEBI:64566 biolink:NamedThing lysophosphatidylcholine 18:1 monarch-merged.owl owl:Class CHEBI:64567 biolink:NamedThing lysophosphatidylcholine 22:6 monarch-merged.owl owl:Class CHEBI:64568 biolink:NamedThing lysophosphatidylcholine 20:4 monarch-merged.owl owl:Class CHEBI:67058 biolink:NamedThing lysophosphatidylcholine 20:0 monarch-merged.owl owl:Class CHEBI:72737 biolink:NamedThing lysophosphatidylcholine 17:0 monarch-merged.owl owl:Class CHEBI:78191 biolink:NamedThing 2-lysophosphatidylcholine monarch-merged.owl owl:Class CHEBI:78192 biolink:NamedThing 1-lysophosphatidylcholine monarch-merged.owl owl:Class CHEBI:84465 biolink:NamedThing acyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:85563 biolink:NamedThing lysophosphatidylcholine 6:0 monarch-merged.owl owl:Class CHEBI:112505 biolink:NamedThing 2-amino-3-hydroxy-4-methylbenzoyl-AMP monarch-merged.owl owl:Class CHEBI:37021 biolink:NamedThing purine ribonucleoside 5'-monophosphate monarch-merged.owl purine ribonucleoside 5'-monophosphates chebi_ontology owl:Class CHEBI:127781 biolink:NamedThing 17-(4-hydroxyphenyl)heptadecanoyl-AMP monarch-merged.owl owl:Class CHEBI:128120 biolink:NamedThing 19-(4-hydroxyphenyl)nonadecanoyl-AMP monarch-merged.owl owl:Class CHEBI:131572 biolink:NamedThing 3'-L-prolyl-AMP monarch-merged.owl owl:Class CHEBI:139296 biolink:NamedThing D-alanyl-AMP monarch-merged.owl owl:Class CHEBI:15572 biolink:NamedThing 2,3-dihydroxybenzoyl 5'-adenylate monarch-merged.owl owl:Class CHEBI:15919 biolink:NamedThing N(6)-(1,2-dicarboxyethyl)-AMP monarch-merged.owl owl:Class CHEBI:16027 biolink:NamedThing adenosine 5'-monophosphate A purine ribonucleoside 5'-monophosphate having adenine as the nucleobase. monarch-merged.owl fosfato de adenosina|Adenylic acid|ADENOSINE MONOPHOSPHATE|adenosine 5'-(dihydrogen phosphate)|phosphate d'adenosine|Adenosine-5'-monophosphoric acid|pA|Ado5'P|5'-Adenylic acid|5'-Adenosine monophosphate|adenosine phosphate|Adenosine 5'-phosphate|5'-adenylic acid|AMP|Adenylate|5'-AMP|5'-O-phosphonoadenosine|adenosine-5'P|Adenosine 5'-monophosphate|adenosini phosphas|PAdo 0 C10H14N5O7P InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 UDMBCSSLTHHNCD-KQYNXXCUSA-N 347.22120 347.06308 Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O Wikipedia:Adenylic_acid|Drug_Central:92|KEGG:C00020|Gmelin:38561|Beilstein:54612|KNApSAcK:C00019347|Reaxys:54612|PMID:12020809|LINCS:LSM-5914|COMe:MOL000174|PDBeChem:AMP|PMID:22624049|PMID:16091942|PMID:17439666|PMID:22215671|DrugBank:DB00131|PMID:11307758|PMID:15946677|PMID:16295522|MetaCyc:AMP|PMID:16250233|PMID:15148540|CAS:61-19-8|HMDB:HMDB0000045|PMID:12181610|PMID:2559771|KEGG:D02769 CHEBI:40786|CHEBI:13740|CHEBI:22245|CHEBI:13736|CHEBI:47222|CHEBI:13234|CHEBI:40726|CHEBI:40826|CHEBI:2356|CHEBI:13235|CHEBI:12056|CHEBI:40510|CHEBI:22242 chebi_ontology owl:Class CHEBI:17202 biolink:NamedThing IMP A purine ribonucleoside 5'-monophosphate having hypoxanthine as the nucleobase. monarch-merged.owl Inosinic acid|IMP|5'-Inosine monophosphate|5'-inosinic acid|ribosylhypoxanthine monophosphate|Inosine monophosphate|Inosine 5'-phosphate|inosinic acid|5'-IMP|5'-Inosinate|hypoxanthosine 5'-monophosphate|2'-inosine-5'-monophosphate|5'-Inosinic acid|Inosine 5'-monophosphate 0 C10H13N4O8P InChI=1S/C10H13N4O8P/c15-6-4(1-21-23(18,19)20)22-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,11,12,17)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 GRSZFWQUAKGDAV-KQYNXXCUSA-N 348.20600 348.04710 O[C@@H]1[C@@H](COP(O)(O)=O)O[C@H]([C@@H]1O)n1cnc2c1nc[nH]c2=O Wikipedia:Inosinic_acid|KEGG:C00130|PDBeChem:IMP|KNApSAcK:C00007224|Gmelin:528845|Beilstein:630517|DrugBank:DB04566|PMID:7877593|CAS:131-99-7|Reaxys:630517|HMDB:HMDB0000175|MetaCyc:IMP CHEBI:12057|CHEBI:13372|CHEBI:47501|CHEBI:43611|CHEBI:13373|CHEBI:43563|CHEBI:43418|CHEBI:14457|CHEBI:43475|CHEBI:5849|CHEBI:12063|CHEBI:19271|CHEBI:43524 chebi_ontology owl:Class CHEBI:17345 biolink:NamedThing guanosine 5'-monophosphate A purine ribonucleoside 5'-monophosphate having guanine as the nucleobase. monarch-merged.owl pG|Guanosine 5'-phosphate|Guanylic acid|5'-GMP|Guanosine monophosphate|5'-guanylic acid|GMP|Guanosine 5'-monophosphate|guanosine-5'-monophosphate|[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen phosphate 0 C10H14N5O8P InChI=1S/C10H14N5O8P/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1 RQFCJASXJCIDSX-UUOKFMHZSA-N 363.22082 363.05800 Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O PMID:11233304|CAS:85-32-5|PDBeChem:5GP|MetaCyc:GMP|PMID:11670950|Reaxys:59430|PMID:3569407|Wikipedia:Guanosine_monophosphate|DrugBank:DB01972|KNApSAcK:C00019635|HMDB:HMDB0001397|PMID:22735334|KEGG:C00144|PMID:2559771 CHEBI:24450|CHEBI:5228|CHEBI:40119|CHEBI:13341|CHEBI:47450|CHEBI:42887|CHEBI:42979|CHEBI:14381|CHEBI:42831|CHEBI:24449|CHEBI:42647 chebi_ontology owl:Class CHEBI:17825 biolink:NamedThing 7-methylguanosine 5'-phosphate(1+) monarch-merged.owl owl:Class CHEBI:21865 biolink:NamedThing N(6)-dimethylallyladenosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:29076 biolink:NamedThing 3''-adenylylstreptomycin monarch-merged.owl owl:Class CHEBI:3110 biolink:NamedThing biotinyl-5'-AMP monarch-merged.owl owl:Class CHEBI:40196 biolink:NamedThing N(6)-methyl-AMP monarch-merged.owl owl:Class CHEBI:40460 biolink:NamedThing 2'-O-methyladenosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:43967 biolink:NamedThing N(2),N(2)-dimethylguanosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:43986 biolink:NamedThing N(6),N(6)-dimethyl-AMP monarch-merged.owl owl:Class CHEBI:55451 biolink:NamedThing lipoyl-AMP monarch-merged.owl owl:Class CHEBI:61645 biolink:NamedThing L-seryl-AMP monarch-merged.owl owl:Class CHEBI:64849 biolink:NamedThing glycyl-AMP monarch-merged.owl owl:Class CHEBI:64851 biolink:NamedThing L-threonyl-AMP monarch-merged.owl owl:Class CHEBI:71719 biolink:NamedThing 9-ribosyl-trans-zeatin 5'-monophosphate monarch-merged.owl owl:Class CHEBI:73680 biolink:NamedThing carbamoyl adenylate monarch-merged.owl owl:Class CHEBI:73687 biolink:NamedThing L-threonylcarbamoyladenylate monarch-merged.owl owl:Class CHEBI:74268 biolink:NamedThing N(1)-methylguanosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74643 biolink:NamedThing 2-thio-N(6)-dimethylallyladenine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74646 biolink:NamedThing 2-methylthio-N(6)-dimethylallyladenine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74722 biolink:NamedThing N(2)-methylguanosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74736 biolink:NamedThing N(1)-methyladenosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74770 biolink:NamedThing 2-methyladenosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74788 biolink:NamedThing 8-methyladenosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:83621 biolink:NamedThing fatty acyl-AMP monarch-merged.owl owl:Class CHEBI:86433 biolink:NamedThing 4-hydroxybenzoyl-AMP monarch-merged.owl owl:Class CHEBI:86457 biolink:NamedThing 2-hydroxybenzoyl-AMP monarch-merged.owl owl:Class CHEBI:86459 biolink:NamedThing (R)-lipoyl-GMP monarch-merged.owl owl:Class CHEBI:37787 biolink:NamedThing acyclic mixed acid anhydride monarch-merged.owl owl:Class CHEBI:137396 biolink:NamedThing 5-carboxy-1-(5-O-phosphono-beta-D-ribofuranosyl)pyridinium-3-carbonyl adenylate monarch-merged.owl owl:Class CHEBI:137397 biolink:NamedThing 1-(5-O-phosphono-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridinium-3-carbonyl adenylate monarch-merged.owl owl:Class CHEBI:16826 biolink:NamedThing acyl monophosphate monarch-merged.owl owl:Class CHEBI:37875 biolink:NamedThing acyl sulfate monarch-merged.owl owl:Class CHEBI:90099 biolink:NamedThing carboxyphosphoric acid monarch-merged.owl owl:Class CHEBI:11302 biolink:NamedThing 10-desacetyltaxuyunnanin C monarch-merged.owl owl:Class CHEBI:50367 biolink:NamedThing taxane diterpenoid monarch-merged.owl owl:Class CHEBI:15208 biolink:NamedThing taxuyunnanin C monarch-merged.owl owl:Class CHEBI:30038 biolink:NamedThing taxa-4(20),11-dien-5alpha-ol monarch-merged.owl owl:Class CHEBI:30042 biolink:NamedThing taxa-4(20),11-dien-5alpha-yl acetate monarch-merged.owl owl:Class CHEBI:45863 biolink:NamedThing paclitaxel monarch-merged.owl owl:Class CHEBI:50436 biolink:NamedThing 10beta-hydroxytaxa-4(20),11-dien-5alpha-yl acetate monarch-merged.owl owl:Class CHEBI:63663 biolink:NamedThing 10beta,14beta-dihydroxytaxa-4(20),11-dien-5alpha-yl acetate monarch-merged.owl owl:Class CHEBI:11305 biolink:NamedThing 10-hydroxycaprate monarch-merged.owl owl:Class CHEBI:76307 biolink:NamedThing omega-hydroxy fatty acid anion monarch-merged.owl owl:Class CHEBI:132026 biolink:NamedThing 20-HETrE(1-) monarch-merged.owl owl:Class CHEBI:137457 biolink:NamedThing 9,10-epoxy-18-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:137467 biolink:NamedThing 9,10-epoxy-18-hydroxy-(12Z)-octadecenoate monarch-merged.owl owl:Class CHEBI:137469 biolink:NamedThing 12,13-epoxy-18-hydroxy-(9Z)-octadecenoate monarch-merged.owl owl:Class CHEBI:137474 biolink:NamedThing 8,9-epoxy-20-hydroxy-(5Z,11Z,14Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:137475 biolink:NamedThing 11,12-epoxy-20-hydroxy-(5Z,8Z,14Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:137476 biolink:NamedThing 14,15-epoxy-20-hydroxy-(5Z,8Z,11Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:140992 biolink:NamedThing omega-hydroxy-long-chain fatty acid anion monarch-merged.owl owl:Class CHEBI:147288 biolink:NamedThing omega-hydroxy-ultra-long-chain fatty acid anion monarch-merged.owl owl:Class CHEBI:32383 biolink:NamedThing 6-hydroxyhexanoate monarch-merged.owl owl:Class CHEBI:36204 biolink:NamedThing 12-hydroxylaurate monarch-merged.owl owl:Class CHEBI:76305 biolink:NamedThing 26-hydroxyhexacosanoate monarch-merged.owl owl:Class CHEBI:76610 biolink:NamedThing omega-hydroxytetracosanoate monarch-merged.owl owl:Class CHEBI:76615 biolink:NamedThing 3,18-dihydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:76618 biolink:NamedThing 3,12-dihydroxylaurate monarch-merged.owl owl:Class CHEBI:76624 biolink:NamedThing 20-HETE(1-) monarch-merged.owl owl:Class CHEBI:76639 biolink:NamedThing 20-HEPE(1-) monarch-merged.owl owl:Class CHEBI:77015 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19Z)-22-hydroxydocosahexaenoate monarch-merged.owl owl:Class CHEBI:78424 biolink:NamedThing 18-hydroxyoleate monarch-merged.owl owl:Class CHEBI:83914 biolink:NamedThing omega-hydroxy-15-methylpalmitate monarch-merged.owl owl:Class CHEBI:90707 biolink:NamedThing 20-hydroxylipoxin A4(1-) monarch-merged.owl owl:Class CHEBI:90711 biolink:NamedThing 20-hydroxylipoxin B4(1-) monarch-merged.owl owl:Class CHEBI:90715 biolink:NamedThing 5,20-DiHETE(1-) monarch-merged.owl owl:Class CHEBI:90717 biolink:NamedThing 8,20-DiHETE(1-) monarch-merged.owl owl:Class CHEBI:90719 biolink:NamedThing 12,20-DiHETE(1-) monarch-merged.owl owl:Class CHEBI:90732 biolink:NamedThing 20-hydroxy-6-trans-leukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:91294 biolink:NamedThing 12,18-dihydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:91300 biolink:NamedThing (9Z,12R)-12,18-dihydroxyoctadecenoate monarch-merged.owl owl:Class CHEBI:91301 biolink:NamedThing 5,20-diHEPE(1-) monarch-merged.owl owl:Class CHEBI:131861 biolink:NamedThing HODE(1-) An unsaturated fatty acid anion obtained by the deprotonation of the carboxy group of any hydroxyoctadecadienoic acid. monarch-merged.owl HODE anion|hydroxyoctadecadienoates|HODE anions chebi_ontology owl:Class CHEBI:131870 biolink:NamedThing hydroxy monounsaturated fatty acid anion monarch-merged.owl owl:Class CHEBI:131871 biolink:NamedThing hydroxy polyunsaturated fatty acid anion Any polyunsaturated fatty acid anion carrying one or more hydroxy substituents. monarch-merged.owl hydroxy polyunsaturated fatty acid anions|a hydroxy polyunsaturated fatty acid|hydroxy PUFA -1 CHO3R 61.017 60.99257 O*C([O-])=O chebi_ontology owl:Class CHEBI:131872 biolink:NamedThing hydroxy saturated fatty acid anion monarch-merged.owl owl:Class CHEBI:132064 biolink:NamedThing 11-hydroxy-(12S,13S)-epoxy-(9Z)-octadecenoate(1-) monarch-merged.owl owl:Class CHEBI:132079 biolink:NamedThing resolvin D1(1-) monarch-merged.owl owl:Class CHEBI:132080 biolink:NamedThing 8-oxoresolvin D1(1-) monarch-merged.owl owl:Class CHEBI:132081 biolink:NamedThing 17-oxoresolvin D1(1-) monarch-merged.owl owl:Class CHEBI:133367 biolink:NamedThing resolvin D2(1-) monarch-merged.owl owl:Class CHEBI:133719 biolink:NamedThing hydroxyoctanoate monarch-merged.owl owl:Class CHEBI:133812 biolink:NamedThing 5(S),6(S)-epoxy-18-hydroxy-(7E,9E,11Z,14Z,16E)-icosapentaenoate monarch-merged.owl owl:Class CHEBI:137497 biolink:NamedThing 7-oxoresolvin D2(1-) monarch-merged.owl owl:Class CHEBI:137498 biolink:NamedThing 16-oxoresolvin D2(1-) monarch-merged.owl owl:Class CHEBI:16724 biolink:NamedThing 4-hydroxybutyrate monarch-merged.owl owl:Class CHEBI:53800 biolink:NamedThing 4-hydroxy-2-oxohexanoate monarch-merged.owl owl:Class CHEBI:57409 biolink:NamedThing 15(S)-HETE(1-) monarch-merged.owl owl:Class CHEBI:62638 biolink:NamedThing (S)-3-hydroxyisobutyrate monarch-merged.owl owl:Class CHEBI:63590 biolink:NamedThing 18-HETE(1-) monarch-merged.owl owl:Class CHEBI:63904 biolink:NamedThing 3,16-dihydroxyhexadecanoate monarch-merged.owl owl:Class CHEBI:64223 biolink:NamedThing 6-hydroxy-3,7-dimethyloctanoate monarch-merged.owl owl:Class CHEBI:64224 biolink:NamedThing 6-hydroxy-3-isopropenylheptanoate monarch-merged.owl owl:Class CHEBI:67026 biolink:NamedThing lipoxin A4(1-) monarch-merged.owl owl:Class CHEBI:67031 biolink:NamedThing lipoxin B4(1-) monarch-merged.owl owl:Class CHEBI:76176 biolink:NamedThing 2-hydroxy fatty acid anion monarch-merged.owl owl:Class CHEBI:35471 biolink:NamedThing psychotropic drug A loosely defined grouping of drugs that have effects on psychological function. monarch-merged.owl psychoactive drugs|psychotropic drugs|psychoactive agent|psychopharmaceuticals Wikipedia:Psychotropic_drug chebi_ontology owl:Class CHEBI:35475 biolink:NamedThing non-steroidal anti-inflammatory drug An anti-inflammatory drug that is not a steroid. In addition to anti-inflammatory actions, non-steroidal anti-inflammatory drugs have analgesic, antipyretic, and platelet-inhibitory actions. They act by blocking the synthesis of prostaglandins by inhibiting cyclooxygenase, which converts arachidonic acid to cyclic endoperoxides, precursors of prostaglandins. monarch-merged.owl NSAID|NSAIDs|non-steroidal anti-inflammatory agent|non-steroidal anti-inflammatory drugs owl:Class CHEBI:48561 biolink:NamedThing dopaminergic antagonist A drug that binds to but does not activate dopamine receptors, thereby blocking the actions of dopamine or exogenous agonists. monarch-merged.owl dopaminergic antagonists|dopamine blocker|dopamine receptor antagonist|dopamine antagonist chebi_ontology owl:Class CHEBI:75771 biolink:NamedThing mouse metabolite Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus). monarch-merged.owl Mus musculus metabolite|mouse metabolites|Mus musculus metabolites chebi_ontology owl:Class CHEBI:76990 biolink:NamedThing mycoestrogen monarch-merged.owl owl:Class CHEBI:77746 biolink:NamedThing human metabolite Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens). monarch-merged.owl Homo sapiens metabolites|H. sapiens metabolites|H. sapiens metabolite|Homo sapiens metabolite CHEBI:77123|CHEBI:75770 chebi_ontology owl:Class CHEBI:33281 biolink:NamedThing antimicrobial agent A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans. monarch-merged.owl microbicide|microbicides|antibiotics|Antibiotika|antimicrobial|antibiotique|antibiotic|antimicrobials|antimicrobial agents|Antibiotikum PMID:22849276|PMID:22958833|PMID:22849268|PMID:12964249|PMID:22117953|PMID:22439833 CHEBI:22582 chebi_ontology owl:Class CHEBI:76924 biolink:NamedThing plant metabolite Any eukaryotic metabolite produced during a metabolic reaction in plants, the kingdom that include flowering plants, conifers and other gymnosperms. monarch-merged.owl plant metabolites|plant secondary metabolites CHEBI:75766|CHEBI:76925 chebi_ontology owl:Class CHEBI:25212 biolink:NamedThing metabolite Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites. monarch-merged.owl metabolites|metabolite|secondary metabolites|primary metabolites CHEBI:26619|CHEBI:35220 chebi_ontology owl:Class PATO:0010001 biolink:NamedThing disconnected A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other. monarch-merged.owl davidos 2014-12-12T08:43:17Z quality owl:Class CHEBI:24850 biolink:NamedThing insect attractant monarch-merged.owl owl:Class CHEBI:36047 biolink:NamedThing antibacterial drug A drug used to treat or prevent bacterial infections. monarch-merged.owl antibacterial drugs owl:Class CHEBI:76969 biolink:NamedThing bacterial metabolite Any prokaryotic metabolite produced during a metabolic reaction in bacteria. monarch-merged.owl CHEBI:76970|CHEBI:75760 chebi_ontology owl:Class CHEBI:76976 biolink:NamedThing bacterial xenobiotic metabolite monarch-merged.owl owl:Class CHEBI:48279 biolink:NamedThing serotonergic antagonist Drugs that bind to but do not activate serotonin receptors, thereby blocking the actions of serotonin or serotonergic agonists. monarch-merged.owl 5-HT antagonists|5-hydroxytryptamine antagonists|serotonin antagonists|antiserotonergic agents|serotonin blockaders chebi_ontology owl:Class CHEBI:27311 biolink:NamedThing volatile oil component Any plant metabolite that is found naturally as a component of a volatile oil. monarch-merged.owl essential oil component|essential oil components|ethereal oil components|ethereal oil component|volatile oil components Wikipedia:Essential_oil chebi_ontology owl:Class IAO:0000096 biolink:NamedThing source code module A source code module is a directive information entity that specifies, using a programming language, some algorithm. monarch-merged.owl group:OBI|OBI_0000039 source code module The written source code that implements part of an algorithm. Test - if you know that it was written in a specific language, then it can be source code module. We mean here, roughly, the wording of a document such as a perl script. person:Chris Stoeckert|person:Alan Ruttenberg owl:Class CHEBI:48318 biolink:NamedThing fragrance monarch-merged.owl owl:Class PATO:0002266 biolink:NamedThing 3-D shape A shape that inheres in a 3 dimensional entity. monarch-merged.owl george 2010-10-05T12:31:16Z quality owl:Class CHEBI:59517 biolink:NamedThing DNA synthesis inhibitor Any substance that inhibits the synthesis of DNA. monarch-merged.owl DNA synthesis inhibitors chebi_ontology owl:Class CHEBI:35610 biolink:NamedThing antineoplastic agent A substance that inhibits or prevents the proliferation of neoplasms. monarch-merged.owl antineoplastic agents|cytostatic|anticancer agent|anticancer agents|antineoplastic chebi_ontology owl:Class CHEBI:75772 biolink:NamedThing Saccharomyces cerevisiae metabolite Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae). monarch-merged.owl Saccharomyces cerevisiae secondary metabolites|baker's yeast secondary metabolite|S. cerevisiae metabolites|S. cerevisiae secondary metabolites|S. cerevisiae secondary metabolite|baker's yeast metabolite|Saccharomyces cerevisiae metabolites|S. cerevisiae metabolite|baker's yeast secondary metabolites|baker's yeast metabolites CHEBI:76951|CHEBI:76949 chebi_ontology owl:Class PATO:0001993 biolink:NamedThing multicellular A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell. monarch-merged.owl quality owl:Class CHEBI:22586 biolink:NamedThing antioxidant A substance that opposes oxidation or inhibits reactions brought about by dioxygen or peroxides. monarch-merged.owl antioxydant|antioxidants|antoxidant chebi_ontology owl:Class CHEBI:25512 biolink:NamedThing neurotransmitter An endogenous compound that is used to transmit information across the synapse between a neuron and another cell. monarch-merged.owl neurotransmitters Wikipedia:Neurotransmitter chebi_ontology owl:Class Neb5bb757c8cc473f884b6be92a45b979 biolink:NamedThing monarch-merged.owl CHEBI:49201 biolink:NamedThing anti-ulcer drug monarch-merged.owl owl:Class Nba3c14b3bd1048e8ac9d979f16e77dfa biolink:NamedThing monarch-merged.owl CHEBI:55324 biolink:NamedThing gastrointestinal drug A drug used for its effects on the gastrointestinal system, e.g. controlling gastric acidity, regulating gastrointestinal motility and water flow, and improving digestion. monarch-merged.owl gastrointestinal agent|gastrointestinal drugs|gastrointestinal agents chebi_ontology owl:Class CHEBI:76946 biolink:NamedThing fungal metabolite Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds. monarch-merged.owl fungal metabolites CHEBI:75765|CHEBI:76947 chebi_ontology owl:Class CHEBI:35476 biolink:NamedThing antipsychotic agent Antipsychotic drugs are agents that control agitated psychotic behaviour, alleviate acute psychotic states, reduce psychotic symptoms, and exert a quieting effect. monarch-merged.owl major tranquilizing agents|neuroleptique|neuroleptics|Neuroleptikum|antipsychotics|antipsychotic drug|antipsychotiques|neuroleptic agents|antipsychotic agents|grosser Tranquilizer|neuroleptic|major tranquilizers|antipsychotic drugs|neuroleptiques chebi_ontology owl:Class CHEBI:50629 biolink:NamedThing cyclooxygenase 2 inhibitor A cyclooxygenase inhibitor that interferes with the action of cyclooxygenase 2. monarch-merged.owl cyclo-oxygenase 2 inhibitor|cyclo-oxygenase-2 inhibitor|cyclooxygenase 2 inhibitors|cyclo-oxygenase-2 inhibitors|prostaglandin H synthase-2 inhibitor|prostaglandin-endoperoxide synthase 2 inhibitor|COX-2 inhibitors|cyclo-oxygenase 2 inhibitors|cyclooxygenase-2 inhibitor|COX-2 inhibitor|prostaglandin H synthase-2 inhibitors|prostaglandin-endoperoxide synthase 2 inhibitors|cyclooxygenase-2 inhibitors|PGHS-2 inhibitors|PGHS-2 inhibitor owl:Class CHEBI:76956 biolink:NamedThing Aspergillus metabolite Any fungal metabolite produced during a metabolic reaction in the mould, Aspergillus. monarch-merged.owl Aspergillus metabolites CHEBI:75864|CHEBI:76958 chebi_ontology owl:Class CHEBI:25442 biolink:NamedThing mycotoxin Poisonous substance produced by fungi. monarch-merged.owl fungal toxins|mycotoxins chebi_ontology owl:Class CHEBI:76971 biolink:NamedThing Escherichia coli metabolite Any bacterial metabolite produced during a metabolic reaction in Escherichia coli. monarch-merged.owl E.coli metabolites|E.coli metabolite|Escherichia coli metabolites chebi_ontology owl:Class CHEBI:48422 biolink:NamedThing angiogenesis inhibitor monarch-merged.owl owl:Class CHEBI:37956 biolink:NamedThing histamine antagonist Histamine antagonists are the drugs that bind to but do not activate histamine receptors, thereby blocking the actions of histamine or histamine agonists. monarch-merged.owl antihistamines|antihistaminics|histamine receptor blockers|antihistaminico|histamine receptor blocker|antihistamine Wikipedia:Antihistamines|PMID:22035879 chebi_ontology owl:Class CHEBI:59163 biolink:NamedThing biomarker A substance used as an indicator of a biological state. monarch-merged.owl biological marker chebi_ontology owl:Class CHEBI:75763 biolink:NamedThing eukaryotic metabolite Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms. monarch-merged.owl eukaryotic metabolites chebi_ontology owl:Class PATO:0010000 biolink:NamedThing maximally connected A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure. monarch-merged.owl What counts as maximally connected may be relative to some specification of granularity. davidos 2014-12-12T08:41:11Z quality owl:Class CHEBI:33282 biolink:NamedThing antibacterial agent A substance (or active part thereof) that kills or slows the growth of bacteria. monarch-merged.owl antibacterial agents|bactericides|antibacterials|bactericide chebi_ontology owl:Class CHEBI:72575 biolink:NamedThing alarm pheromone monarch-merged.owl owl:Class CHEBI:67200 biolink:NamedThing provitamin A monarch-merged.owl owl:Class CHEBI:76967 biolink:NamedThing human xenobiotic metabolite Any human metabolite produced by metabolism of a xenobiotic compound in humans. monarch-merged.owl human xenobiotic metabolites chebi_ontology owl:Class CHEBI:48876 biolink:NamedThing muscarinic antagonist monarch-merged.owl owl:Class CHEBI:76627 biolink:NamedThing 19-HETE(1-) monarch-merged.owl owl:Class CHEBI:76628 biolink:NamedThing 11-hydroxylaurate monarch-merged.owl owl:Class CHEBI:76636 biolink:NamedThing 19-HEPE(1-) monarch-merged.owl owl:Class CHEBI:77852 biolink:NamedThing 9(S)-HODE(1-) monarch-merged.owl owl:Class CHEBI:77895 biolink:NamedThing 9(R)-HODE(1-) monarch-merged.owl owl:Class CHEBI:78311 biolink:NamedThing 15-oxolipoxin A4(1-) monarch-merged.owl owl:Class CHEBI:78325 biolink:NamedThing 13,14-dihydro-15-oxolipoxin A4(1-) monarch-merged.owl owl:Class CHEBI:78329 biolink:NamedThing 13,14-dihydrolipoxin A4(1-) monarch-merged.owl owl:Class CHEBI:78415 biolink:NamedThing trioxilin anion monarch-merged.owl owl:Class CHEBI:78554 biolink:NamedThing 2-methyl-3-hydroxybutyrate monarch-merged.owl owl:Class CHEBI:83916 biolink:NamedThing omega-hydroxyphytanate monarch-merged.owl owl:Class CHEBI:83936 biolink:NamedThing 15-hydroxypalmitate monarch-merged.owl owl:Class CHEBI:83938 biolink:NamedThing 14-hydroxypalmitate monarch-merged.owl owl:Class CHEBI:84032 biolink:NamedThing (5Z,11Z,14Z)-8,9-dihydroxyicosatrienoate monarch-merged.owl owl:Class CHEBI:84196 biolink:NamedThing 3-hydroxy fatty acid anion A hydroxy fatty acid anion obtained by deprotonation of the carboxy group of any 3-hydroxy fatty acid. monarch-merged.owl 3-hydroxy fatty acid -1 C3H4O3R 88.062 88.01604 OC([*])CC([O-])=O chebi_ontology owl:Class CHEBI:84497 biolink:NamedThing (omega-1)-hydroxy fatty acid anion A hydroxy fatty acid anion obtained by deprotonation of the carboxy group of any (omega-1)-hydroxy fatty acid; major species at pH 7.3. monarch-merged.owl an (omega-1)-hydroxy fatty acid|(omega-1)-hydroxy fatty acid anion -1 C3H5O3R 89.070 89.02387 CC(O)[*]C([O-])=O chebi_ontology owl:Class CHEBI:84921 biolink:NamedThing 7-hydroxylaurate monarch-merged.owl owl:Class CHEBI:85197 biolink:NamedThing 9,10-dihydroxystearate monarch-merged.owl owl:Class CHEBI:90631 biolink:NamedThing 5-hydroperoxy-15-HETE(1-) monarch-merged.owl owl:Class CHEBI:90632 biolink:NamedThing 5(S)-HETE(1-) monarch-merged.owl owl:Class CHEBI:90716 biolink:NamedThing 8-HETE(1-) monarch-merged.owl owl:Class CHEBI:90723 biolink:NamedThing 6-trans-leukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:90737 biolink:NamedThing 5-HEPE(1-) monarch-merged.owl owl:Class CHEBI:90812 biolink:NamedThing 5(S),15(R)-DiHETE(1-) monarch-merged.owl owl:Class CHEBI:90813 biolink:NamedThing 5(S),15(S)-DiHETE(1-) monarch-merged.owl owl:Class CHEBI:90814 biolink:NamedThing 17(R)-HDoHE(1-) monarch-merged.owl owl:Class CHEBI:90815 biolink:NamedThing (4Z,7Z,10Z,14E,16Z,19Z)-13-hydroxydocosahexaenoate monarch-merged.owl owl:Class CHEBI:90825 biolink:NamedThing 18-HEPE(1-) monarch-merged.owl owl:Class CHEBI:90866 biolink:NamedThing 14-HDoHE(1-) monarch-merged.owl owl:Class CHEBI:91000 biolink:NamedThing resolvin E1(1-) monarch-merged.owl owl:Class CHEBI:91001 biolink:NamedThing 18-oxoresolvin E1(1-) monarch-merged.owl owl:Class CHEBI:91295 biolink:NamedThing ricinoleate monarch-merged.owl owl:Class CHEBI:35960 biolink:NamedThing 6-oxo monocarboxylic acid monarch-merged.owl owl:Class CHEBI:2490 biolink:NamedThing 6-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:29086 biolink:NamedThing 3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1(10),2-dien-4-oic acid monarch-merged.owl owl:Class CHEBI:61027 biolink:NamedThing (2E,4E)-6-(2-aminophenyl)-2-hydroxy-6-oxohexa-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:64264 biolink:NamedThing 3-isopropenyl-6-oxoheptanoic acid monarch-merged.owl owl:Class CHEBI:132247 biolink:NamedThing (-)-DCA-CL monarch-merged.owl owl:Class CHEBI:132251 biolink:NamedThing (+)-DCA-CL monarch-merged.owl owl:Class CHEBI:132257 biolink:NamedThing (2S,3R)-glycosmisic acid monarch-merged.owl owl:Class CHEBI:132805 biolink:NamedThing beta-D-4-deoxy-Delta(4)-GlcpA-(1->3)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:139179 biolink:NamedThing 4,4'-diapolycopen-4-oic acid monarch-merged.owl owl:Class CHEBI:145742 biolink:NamedThing (Z)-3-amino-2-methylacrylic acid monarch-merged.owl owl:Class CHEBI:15580 biolink:NamedThing (2E,6E,10R,11S)-10,11-epoxy-3,7,11-trimethyltrideca-2,6-dienoic acid monarch-merged.owl owl:Class CHEBI:15745 biolink:NamedThing 2-aminomuconic 6-semialdehyde monarch-merged.owl owl:Class CHEBI:15941 biolink:NamedThing 2,3-dihydroxy-2,3-dihydrobenzoic acid monarch-merged.owl owl:Class CHEBI:15953 biolink:NamedThing 6-imino-5-oxocyclohexa-1,3-dienecarboxylic acid monarch-merged.owl owl:Class CHEBI:16119 biolink:NamedThing shikimic acid monarch-merged.owl owl:Class CHEBI:16428 biolink:NamedThing 4-coumaroylshikimic acid monarch-merged.owl owl:Class CHEBI:16453 biolink:NamedThing 1,4,5,6-tetrahydro-6-oxonicotinic acid monarch-merged.owl owl:Class CHEBI:16735 biolink:NamedThing 2-acetamido-2-deoxy-3-O-(4-deoxy-alpha-L-threo-hex-4-enopyranosyluronic acid)-6-O-sulfo-D-glucopyranose monarch-merged.owl owl:Class CHEBI:17123 biolink:NamedThing 2-aminoacrylic acid monarch-merged.owl owl:Class CHEBI:17217 biolink:NamedThing 2-butenoic acid monarch-merged.owl owl:Class CHEBI:17236 biolink:NamedThing 2-hydroxy-6-oxohexa-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:17610 biolink:NamedThing 3-nitroacrylic acid monarch-merged.owl owl:Class CHEBI:18242 biolink:NamedThing cis-5,6-dihydroxy-4-isopropylcyclohexa-1,3-dienecarboxylic acid monarch-merged.owl owl:Class CHEBI:18301 biolink:NamedThing (2Z,4E)-4-hydroxymuconic semialdehyde monarch-merged.owl owl:Class CHEBI:18308 biolink:NamedThing acrylic acid monarch-merged.owl owl:Class CHEBI:2255 biolink:NamedThing 7beta-aminocephalosporanic acid monarch-merged.owl owl:Class CHEBI:23252 biolink:NamedThing cinnamic acids monarch-merged.owl owl:Class CHEBI:25219 biolink:NamedThing methacrylic acid monarch-merged.owl owl:Class CHEBI:26536 biolink:NamedThing retinoic acid A retinoid consisting of 3,7-dimethylnona-2,4,6,8-tetraenoic acid substituted at position 9 by a 2,6,6-trimethylcyclohex-1-en-1-yl group (geometry of the four exocyclic double bonds is not specified). monarch-merged.owl 3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenoic acid 0 C20H28O2 InChI=1S/C20H28O2/c1-15(8-6-9-16(2)14-19(21)22)11-12-18-17(3)10-7-13-20(18,4)5/h6,8-9,11-12,14H,7,10,13H2,1-5H3,(H,21,22) SHGAZHPCJJPHSC-UHFFFAOYSA-N 300.43512 300.20893 CC(C=CC1=C(C)CCCC1(C)C)=CC=CC(C)=CC(O)=O PMID:24506204|LINCS:LSM-2135 chebi_ontology owl:Class CHEBI:28205 biolink:NamedThing phaseic acid monarch-merged.owl owl:Class CHEBI:29013 biolink:NamedThing fusidic acid monarch-merged.owl owl:Class CHEBI:29045 biolink:NamedThing maleamic acid monarch-merged.owl owl:Class CHEBI:30632 biolink:NamedThing loganic acid monarch-merged.owl owl:Class CHEBI:33199 biolink:NamedThing propynoic acid monarch-merged.owl owl:Class CHEBI:35939 biolink:NamedThing pent-2-enoic acid A pentenoic acid having the double bond at position 2. monarch-merged.owl alpha-pentenoic acid|2-pentenoic acid|beta-ethyl acrylic acid|alpha.beta-Pentensaeure|Pent-2-ensaeure|beta-Aethylacrylsaeure|alpha-Butylen-alpha-carbonsaeure|beta-Aethyl-acrylsaeure|Propylidenessigsaeure|pent-2-enoic acid|C5:1, n-3 0 C5H8O2 InChI=1S/C5H8O2/c1-2-3-4-5(6)7/h3-4H,2H2,1H3,(H,6,7) YIYBQIKDCADOSF-UHFFFAOYSA-N 100.11582 100.05243 [H]C(CC)=CC(O)=O Reaxys:1720310|CAS:626-98-2|LIPID_MAPS_instance:LMFA01030005 chebi_ontology owl:Class CHEBI:35962 biolink:NamedThing sorbic acid monarch-merged.owl owl:Class CHEBI:35964 biolink:NamedThing penta-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:36432 biolink:NamedThing 2-methylbut-2-enoic acid monarch-merged.owl owl:Class CHEBI:36969 biolink:NamedThing farnesoic acid monarch-merged.owl owl:Class CHEBI:36972 biolink:NamedThing dodeca-2,6,10-trienoic acid monarch-merged.owl owl:Class CHEBI:36999 biolink:NamedThing perillic acid monarch-merged.owl owl:Class CHEBI:37127 biolink:NamedThing 3-methylbut-2-enoic acid monarch-merged.owl owl:Class CHEBI:37252 biolink:NamedThing (E)-hexadec-2-enoic acid monarch-merged.owl owl:Class CHEBI:37316 biolink:NamedThing (E,E)-piperic acid monarch-merged.owl owl:Class CHEBI:38358 biolink:NamedThing (2E,4E)-hexa-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:38371 biolink:NamedThing 2-dodecenoic acid monarch-merged.owl owl:Class CHEBI:39157 biolink:NamedThing trichostatic acid monarch-merged.owl owl:Class CHEBI:39449 biolink:NamedThing 2-undecenoic acid monarch-merged.owl owl:Class CHEBI:41893 biolink:NamedThing 4-deoxy-Delta(4)-beta-D-GlcpA monarch-merged.owl owl:Class CHEBI:49262 biolink:NamedThing cyclohexa-1,5-diene-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:50465 biolink:NamedThing 2-decenoic acid monarch-merged.owl owl:Class CHEBI:50573 biolink:NamedThing octadec-2-enoic acid monarch-merged.owl owl:Class CHEBI:52985 biolink:NamedThing 2-hexacosenoic acid monarch-merged.owl owl:Class CHEBI:59893 biolink:NamedThing (Z)-3-aminoacrylic acid monarch-merged.owl owl:Class CHEBI:59930 biolink:NamedThing N-formylmaleamic acid monarch-merged.owl owl:Class CHEBI:61366 biolink:NamedThing 2-tetradecenoic acid monarch-merged.owl owl:Class CHEBI:615 biolink:NamedThing 1-carbapenem-3-carboxylic acid monarch-merged.owl owl:Class CHEBI:62431 biolink:NamedThing abscisic acids monarch-merged.owl owl:Class CHEBI:63735 biolink:NamedThing (2Z,4Z)-2-hydroxyhexa-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:65210 biolink:NamedThing (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoic acid monarch-merged.owl owl:Class CHEBI:67264 biolink:NamedThing geranic acid monarch-merged.owl owl:Class CHEBI:70805 biolink:NamedThing pentalenolactone D monarch-merged.owl owl:Class CHEBI:70807 biolink:NamedThing pentalenolactone E monarch-merged.owl owl:Class CHEBI:70809 biolink:NamedThing pentalenolactone F monarch-merged.owl owl:Class CHEBI:70816 biolink:NamedThing pentalenolactone monarch-merged.owl owl:Class CHEBI:73963 biolink:NamedThing 2-chloroacrylic acid monarch-merged.owl owl:Class CHEBI:75876 biolink:NamedThing (3R,4R)-3,4-dihydroxycyclohexa-1,5-diene-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:77027 biolink:NamedThing 7-deoxyloganetic acid monarch-merged.owl owl:Class CHEBI:83048 biolink:NamedThing 4,4'-diaponeurosporenoic acid monarch-merged.owl owl:Class CHEBI:84971 biolink:NamedThing (2E,6E,10E)-geranylgeranic acid monarch-merged.owl owl:Class CHEBI:11369 biolink:NamedThing 1L-myo-inositol 1,2,3,4,6-pentakisphosphate monarch-merged.owl owl:Class CHEBI:25447 biolink:NamedThing myo-inositol pentakisphosphate monarch-merged.owl owl:Class CHEBI:16322 biolink:NamedThing myo-inositol 1,3,4,5,6-pentakisphosphate monarch-merged.owl owl:Class CHEBI:16507 biolink:NamedThing 1D-myo-inositol 1,2,4,5,6-pentakisphosphate monarch-merged.owl owl:Class CHEBI:30164 biolink:NamedThing 5-diphospho-1D-myo-inositol pentakisphosphate monarch-merged.owl owl:Class CHEBI:48405 biolink:NamedThing 1D-myo-inositol 1,2,3,5,6-pentakisphosphate monarch-merged.owl owl:Class CHEBI:62919 biolink:NamedThing 1-diphospho-1D-myo-inositol 2,3,4,5,6-pentakisphosphate monarch-merged.owl owl:Class CHEBI:62922 biolink:NamedThing 3-diphospho-1D-myo-inositol 1,2,4,5,6-pentakisphosphate monarch-merged.owl owl:Class CHEBI:11392 biolink:NamedThing 2'-(5-triphosphoribosyl)-3'-dephospho-CoA monarch-merged.owl owl:Class CHEBI:37096 biolink:NamedThing adenosine 5'-phosphate monarch-merged.owl adenosine 5'-phosphates chebi_ontology owl:Class CHEBI:15468 biolink:NamedThing 3'-dephospho-CoA monarch-merged.owl owl:Class CHEBI:16406 biolink:NamedThing 5'-acylphosphoadenosine monarch-merged.owl owl:Class CHEBI:16761 biolink:NamedThing ADP A purine ribonucleoside 5'-diphosphate having adenine as the nucleobase. monarch-merged.owl adenosine 5'-(trihydrogen diphosphate)|ADP|H3adp|5'-adenylphosphoric acid|ADENOSINE-5'-DIPHOSPHATE|Adenosine 5'-diphosphate 0 C10H15N5O10P2 InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 XTWYTFMLZFPYCI-KQYNXXCUSA-N 427.20110 427.02942 Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O Beilstein:67722|COMe:MOL000173|CAS:20398-34-9|KNApSAcK:C00019353|PDBeChem:ADP|Reaxys:67722|CAS:58-64-0|Gmelin:88452|KEGG:C00008|DrugBank:DB03431|KEGG:G11113|PMID:16295522 CHEBI:13222|CHEBI:22244|CHEBI:2342|CHEBI:40553 chebi_ontology owl:Class CHEBI:17709 biolink:NamedThing 5'-adenylyl sulfate monarch-merged.owl owl:Class CHEBI:18334 biolink:NamedThing adenosine 5'-(pentahydrogen tetraphosphate) monarch-merged.owl owl:Class CHEBI:40096 biolink:NamedThing adenosine 5'-(hexahydrogen pentaphosphate) monarch-merged.owl owl:Class CHEBI:71394 biolink:NamedThing adenosine thiamine triphosphate monarch-merged.owl owl:Class CHEBI:71678 biolink:NamedThing N(6)-(dimethylallyl)adenosine 5'-diphosphate monarch-merged.owl owl:Class CHEBI:71875 biolink:NamedThing 9-ribosyl-trans-zeatin 5'-diphosphate monarch-merged.owl owl:Class CHEBI:28965 biolink:NamedThing dicarboxylic acid dianion A carboxylic acid dianion obtained by deprotonation of both carboxy groups of any dicarboxylic acid. monarch-merged.owl dicarboxylic acid dianion|dicarboxylates|dicarboxylic acid dianions|a dicarboxylate|dicarboxylate -2 C2O4R 88.019 87.97966 [O-]C(=O)[*]C([O-])=O CHEBI:23688|CHEBI:38711|CHEBI:23689|CHEBI:13632 chebi_ontology owl:Class CHEBI:11596 biolink:NamedThing 2-hydroxyglutarate(2-) A dicarboxylic acid dianion resulting from the removal of a proton from both of the carboxylic acid groups of 2-hydroxyglutaric acid. monarch-merged.owl 2-hydroxypentanedioate|2-hydroxyglutarate -2 C5H6O5 InChI=1S/C5H8O5/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/p-2 HWXBTNAVRSUOJR-UHFFFAOYSA-L 146.09814 146.02262 OC(CCC([O-])=O)C([O-])=O MetaCyc:2-HYDROXYGLUTARIC_ACID|Beilstein:5736650|Reaxys:5736650 chebi_ontology owl:Class CHEBI:12071 biolink:NamedThing 5,10-methylenetetrahydrofolate(2-) monarch-merged.owl owl:Class CHEBI:131934 biolink:NamedThing (-)-DCA-CC(2-) monarch-merged.owl owl:Class CHEBI:131935 biolink:NamedThing (+)-DCA-CC(2-) monarch-merged.owl owl:Class CHEBI:131971 biolink:NamedThing (1R,5aS,6R)-1,4,5,5a,6,9-hexahydrophenazine-1,6-dicarboxylate monarch-merged.owl owl:Class CHEBI:131973 biolink:NamedThing (1R,10aS)-1,4,10,10a-tetrahydrophenazine-1,6-dicarboxylate monarch-merged.owl owl:Class CHEBI:131978 biolink:NamedThing (5aS)-5,5a-dihydrophenazine-1,6-dicarboxylate monarch-merged.owl owl:Class CHEBI:131979 biolink:NamedThing 5,10-dihydrophenazine-1,6-dicarboxylate monarch-merged.owl owl:Class CHEBI:131980 biolink:NamedThing phenazine-1,6-dicarboxylate monarch-merged.owl owl:Class CHEBI:132939 biolink:NamedThing ethylmalonate(2-) A dicarboxylic acid dianion resulting from the removal of a proton from both of the carboxylic acid groups of ethylmalonic acid. monarch-merged.owl ethylpropanedioate -2 C5H6O4 InChI=1S/C5H8O4/c1-2-3(4(6)7)5(8)9/h3H,2H2,1H3,(H,6,7)(H,8,9)/p-2 UKFXDFUAPNAMPJ-UHFFFAOYSA-L 130.099 130.02771 [O-]C(C(C(=O)[O-])CC)=O Reaxys:3904851 chebi_ontology owl:Class CHEBI:133251 biolink:NamedThing 3-hydroxydicarboxylate(2-) A dicarboxylic acid dianion that results from the removal of a proton from both of the carboxylic acid groups of any 3-hydroxydicarboxylic acid. monarch-merged.owl a 3-hydroxy dicarboxylic acid|3-hydroxydicarboxylic acid dianion(2-) -2 C4H4O5R 132.072 132.00587 C(*C(CC(=O)[O-])O)([O-])=O chebi_ontology owl:Class CHEBI:133291 biolink:NamedThing saturated dicarboxylic acid dianion(2-) A carboxylic acid dianion obtained by deprotonation of both carboxy groups of any dicarboxylic acid that contains no carbon-carbon double bonds. monarch-merged.owl a saturated dicarboxylic acid|saturated dicarboxylate(2-) -2 C2O4R 88.019 87.97966 [O-]C(*C([O-])=O)=O chebi_ontology owl:Class CHEBI:133294 biolink:NamedThing oxo dicarboxylic acid dianion A dicarboxylic acid dianion obtained by deprotonation of both carboxy groups of any oxo dicarboxylic acid. monarch-merged.owl oxo dicarboxylic acid dianions|oxo dicarboxylic acid chebi_ontology owl:Class CHEBI:133492 biolink:NamedThing polyunsaturated dicarboxylic acid dianion monarch-merged.owl owl:Class CHEBI:133494 biolink:NamedThing 2-(omega-methylthio)alkylmalate(2-) monarch-merged.owl owl:Class CHEBI:133496 biolink:NamedThing 3-(omega-methylthio)alkylmalate(2-) monarch-merged.owl owl:Class CHEBI:133498 biolink:NamedThing 2-(omega-methylthio)alkylmaleate(2-) monarch-merged.owl owl:Class CHEBI:133898 biolink:NamedThing chromopyrrolate(2-) monarch-merged.owl owl:Class CHEBI:136507 biolink:NamedThing mycobilin a(2-) monarch-merged.owl owl:Class CHEBI:136508 biolink:NamedThing mycobilin b(2-) monarch-merged.owl owl:Class CHEBI:136509 biolink:NamedThing biliverdin beta(2-) monarch-merged.owl owl:Class CHEBI:136905 biolink:NamedThing hyodeoxycholate 6-O-(beta-D-glucuronide)(2-) monarch-merged.owl owl:Class CHEBI:136906 biolink:NamedThing hyocholate 6-O-(beta-D-glucuronide)(2-) monarch-merged.owl owl:Class CHEBI:136916 biolink:NamedThing 5alpha-dihydrotestosterone 17-O-[beta-D-glucuronosyl-(1->2)-glucuronide](2-) monarch-merged.owl owl:Class CHEBI:136965 biolink:NamedThing lithocholate 3-O-(beta-D-glucuronide)(2-) monarch-merged.owl owl:Class CHEBI:138256 biolink:NamedThing N-(4-oxoglutaryl)-L-cysteinylglycine(2-) monarch-merged.owl owl:Class CHEBI:138359 biolink:NamedThing 4,4'-disulfanyldibutanoate monarch-merged.owl owl:Class CHEBI:13997 biolink:NamedThing citramalate(2-) monarch-merged.owl owl:Class CHEBI:140468 biolink:NamedThing gypsogenate(2-) monarch-merged.owl owl:Class CHEBI:14148 biolink:NamedThing dihydrodipicolinate(2-) monarch-merged.owl owl:Class CHEBI:15357 biolink:NamedThing acetylenedicarboxylate(2-) monarch-merged.owl owl:Class CHEBI:15592 biolink:NamedThing 3-isopropylmalate(2-) monarch-merged.owl owl:Class CHEBI:15594 biolink:NamedThing 3-propylmalate(2-) monarch-merged.owl owl:Class CHEBI:15775 biolink:NamedThing 3-oxoadipate(2-) monarch-merged.owl owl:Class CHEBI:16338 biolink:NamedThing 4-hydroxy-L-glutamate(2-) monarch-merged.owl owl:Class CHEBI:16378 biolink:NamedThing threo-3-methyl-L-aspartate(2-) monarch-merged.owl owl:Class CHEBI:16537 biolink:NamedThing galactarate(2-) monarch-merged.owl owl:Class CHEBI:16872 biolink:NamedThing N-malonylanthranilate monarch-merged.owl owl:Class CHEBI:16923 biolink:NamedThing N-formyl-L-aspartate(2-) monarch-merged.owl owl:Class CHEBI:16953 biolink:NamedThing N-acetyl-L-aspartate(2-) monarch-merged.owl owl:Class CHEBI:17081 biolink:NamedThing dimethylmaleate(2-) monarch-merged.owl owl:Class CHEBI:17214 biolink:NamedThing (2S)-2-isopropyl-3-oxosuccinate(2-) monarch-merged.owl owl:Class CHEBI:17240 biolink:NamedThing itaconate(2-) monarch-merged.owl owl:Class CHEBI:17325 biolink:NamedThing 3-hydroxy-3-methylglutarate(2-) A dicarboxylic acid dianion that results from the removal of a proton from both of the carboxylic acid groups of 3-hydroxy-3-methylglutaric acid. monarch-merged.owl 3-hydroxy-3-methylpentanedioate|3-hydroxy-3-methylglutarate -2 C6H8O5 InChI=1S/C6H10O5/c1-6(11,2-4(7)8)3-5(9)10/h11H,2-3H2,1H3,(H,7,8)(H,9,10)/p-2 NPOAOTPXWNWTSH-UHFFFAOYSA-L 160.12470 160.03827 CC(O)(CC([O-])=O)CC([O-])=O MetaCyc:CPD-547|KEGG:C03761 CHEBI:20042|CHEBI:11813 chebi_ontology owl:Class CHEBI:17479 biolink:NamedThing enol-oxaloacetate monarch-merged.owl owl:Class CHEBI:17503 biolink:NamedThing N-acyl-D-glutamates(2-) monarch-merged.owl owl:Class CHEBI:17560 biolink:NamedThing 2,2'-iminodipropanoate monarch-merged.owl owl:Class CHEBI:17563 biolink:NamedThing phthalate(2-) monarch-merged.owl owl:Class CHEBI:17583 biolink:NamedThing N-(long-chain-fatty-acyl)-L-glutamate monarch-merged.owl owl:Class CHEBI:17649 biolink:NamedThing hydroxymalonate(2-) monarch-merged.owl owl:Class CHEBI:17652 biolink:NamedThing 3-hydroxy-L-glutamate(2-) monarch-merged.owl owl:Class CHEBI:17684 biolink:NamedThing N-formyl-L-glutamate(2-) monarch-merged.owl owl:Class CHEBI:18034 biolink:NamedThing 4-fumarylacetoacetate(2-) monarch-merged.owl owl:Class CHEBI:18317 biolink:NamedThing N-acetyl-LL-2,6-diaminopimelate(2-) monarch-merged.owl owl:Class CHEBI:18325 biolink:NamedThing 2-succinatobenzoate monarch-merged.owl owl:Class CHEBI:18327 biolink:NamedThing N-formimidoyl-L-glutamate(2-) monarch-merged.owl owl:Class CHEBI:18387 biolink:NamedThing N-formimidoyl-L-aspartate(2-) monarch-merged.owl owl:Class CHEBI:18608 biolink:NamedThing 5-methyltetrahydrofolate(2-) monarch-merged.owl owl:Class CHEBI:19418 biolink:NamedThing 3-(acetamidomethylene)-2-(hydroxymethyl)succinate(2-) monarch-merged.owl owl:Class CHEBI:23671 biolink:NamedThing 2,6-diaminopimelate(2-) monarch-merged.owl owl:Class CHEBI:24521 biolink:NamedThing heptenedioate monarch-merged.owl owl:Class CHEBI:24785 biolink:NamedThing iminodiacetate monarch-merged.owl owl:Class CHEBI:28107 biolink:NamedThing 2-isopropylmalate(2-) monarch-merged.owl owl:Class CHEBI:28977 biolink:NamedThing 2-hydroxy-3-carboxylato-6-oxo-7-methylocta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:29780 biolink:NamedThing isochorismate(2-) monarch-merged.owl owl:Class CHEBI:29987 biolink:NamedThing glutamate(2-) A dicarboxylic acid dianion that is the conjugate base of glutamate(1-). monarch-merged.owl glutamate|glutamate(2-)|glutamic acid dianion|2-aminopentanedioate -2 C5H7NO4 InChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/p-2 WHUUTDBJXJRKMK-UHFFFAOYSA-L 145.11342 145.03860 NC(CCC([O-])=O)C([O-])=O Gmelin:327903|Reaxys:4134100|Beilstein:4134100 chebi_ontology owl:Class CHEBI:30031 biolink:NamedThing succinate(2-) monarch-merged.owl owl:Class CHEBI:30043 biolink:NamedThing terephthalate(2-) monarch-merged.owl owl:Class CHEBI:30623 biolink:NamedThing oxalate(2-) A dicarboxylic acid dianion obtained by deprotonation of both carboxy groups of oxalic acid. monarch-merged.owl ox|ethanedioic acid, ion(2-)|ethanedioate|oxalate|OXALATE ION -2 C2O4 InChI=1S/C2H2O4/c3-1(4)2(5)6/h(H,3,4)(H,5,6)/p-2 MUBZPKHOEPUJKR-UHFFFAOYSA-L 88.01900 87.98076 [O-]C(=O)C([O-])=O Reaxys:1905970|Beilstein:1905970|CAS:338-70-5|KEGG:C00209|PDBeChem:OXL|Gmelin:2207|UM-BBD_compID:c0017 CHEBI:25729|CHEBI:44820|CHEBI:14702 chebi_ontology owl:Class CHEBI:30719 biolink:NamedThing citraconate(2-) monarch-merged.owl owl:Class CHEBI:30921 biolink:NamedThing glutarate(2-) A dicarboxylic acid dianion obtained by deprotonation of both the carboxy groups of glutaric acid. monarch-merged.owl pentanedioate|glutarate -2 C5H6O4 InChI=1S/C5H8O4/c6-4(7)2-1-3-5(8)9/h1-3H2,(H,6,7)(H,8,9)/p-2 JFCQEDHGNNZCLN-UHFFFAOYSA-L 130.09874 130.02771 [O-]C(=O)CCCC([O-])=O Gmelin:240388|Reaxys:3904695|Beilstein:3904695 CHEBI:24327|CHEBI:14322 chebi_ontology owl:Class CHEBI:32813 biolink:NamedThing N-amidino-L-aspartate(2-) monarch-merged.owl owl:Class CHEBI:35181 biolink:NamedThing 4-amino-4-deoxychorismate(2-) monarch-merged.owl owl:Class CHEBI:36133 biolink:NamedThing pentenedioate monarch-merged.owl owl:Class CHEBI:36147 biolink:NamedThing oxo dicarboxylate monarch-merged.owl oxo dicarboxylates|oxo-dicarboxylic acid dianions|oxo-dicarboxylic acid dianion chebi_ontology owl:Class CHEBI:36165 biolink:NamedThing pimelate(2-) monarch-merged.owl owl:Class CHEBI:36173 biolink:NamedThing pyridinedicarboxylate monarch-merged.owl owl:Class CHEBI:36175 biolink:NamedThing octenedioate monarch-merged.owl owl:Class CHEBI:36180 biolink:NamedThing butenedioate monarch-merged.owl owl:Class CHEBI:36191 biolink:NamedThing hexenedioate monarch-merged.owl owl:Class CHEBI:36205 biolink:NamedThing cyclobutanedicarboxylate monarch-merged.owl owl:Class CHEBI:36986 biolink:NamedThing mesaconate(2-) monarch-merged.owl owl:Class CHEBI:42819 biolink:NamedThing 5-dehydro-4-deoxy-D-glucarate(2-) monarch-merged.owl owl:Class CHEBI:44337 biolink:NamedThing N-acetyl-L-glutamate(2-) monarch-merged.owl owl:Class CHEBI:50681 biolink:NamedThing methotrexate(2-) monarch-merged.owl (2S)-2-(4-{[(2,4-diaminopteridin-6-yl)methyl](methyl)amino}benzamido)pentanedioate|methotrexate owl:Class CHEBI:57412 biolink:NamedThing (3S,4R)-3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate monarch-merged.owl owl:Class CHEBI:57422 biolink:NamedThing (2R,3S)-2,3-dimethylmalate(2-) monarch-merged.owl owl:Class CHEBI:57423 biolink:NamedThing (R)-2-ethylmalate(2-) monarch-merged.owl owl:Class CHEBI:57424 biolink:NamedThing (R)-3,3-dimethylmalate(2-) monarch-merged.owl owl:Class CHEBI:57425 biolink:NamedThing 3-ethylmalate(2-) monarch-merged.owl owl:Class CHEBI:57426 biolink:NamedThing sinapoyl (S)-malate(2-) monarch-merged.owl owl:Class CHEBI:57437 biolink:NamedThing (2R,3Z)-phycocyanobilin(2-) monarch-merged.owl owl:Class CHEBI:57438 biolink:NamedThing (3Z)-phycoerythrobilin(2-) monarch-merged.owl owl:Class CHEBI:57439 biolink:NamedThing (3Z)-phytochromobilin(2-) monarch-merged.owl owl:Class CHEBI:57451 biolink:NamedThing dihydrofolate(2-) monarch-merged.owl owl:Class CHEBI:57452 biolink:NamedThing 10-formyldihydrofolate(2-) monarch-merged.owl owl:Class CHEBI:57453 biolink:NamedThing (6S)-5,6,7,8-tetrahydrofolate(2-) monarch-merged.owl owl:Class CHEBI:57454 biolink:NamedThing 10-formyltetrahydrofolate(2-) Dianion of 10-formyltetrahydrofolic acid arising from deprotonation of both carboxylic acid functions. monarch-merged.owl (6S)-10-formyltetrahydrofolate|N-[4-(N-{[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}formamido)benzoyl]-L-glutamate|10-formyltetrahydrofolate dianion -2 C20H21N7O7 InChI=1S/C20H23N7O7/c21-20-25-16-15(18(32)26-20)23-11(7-22-16)8-27(9-28)12-3-1-10(2-4-12)17(31)24-13(19(33)34)5-6-14(29)30/h1-4,9,11,13,23H,5-8H2,(H,24,31)(H,29,30)(H,33,34)(H4,21,22,25,26,32)/p-2/t11-,13+/m1/s1 AUFGTPPARQZWDO-YPMHNXCESA-L 471.42340 471.15134 [H]C(=O)N(C[C@H]1CNc2nc(N)[nH]c(=O)c2N1)c1ccc(cc1)C(=O)N[C@@H](CCC([O-])=O)C([O-])=O chebi_ontology owl:Class CHEBI:57456 biolink:NamedThing 5-formimidoyltetrahydrofolate(2-) monarch-merged.owl owl:Class CHEBI:57457 biolink:NamedThing (6S)-5-formyltetrahydrofolate(2-) monarch-merged.owl owl:Class CHEBI:57469 biolink:NamedThing (2E)-2-(methoxycarbonylmethyl)but-2-enedioate(2-) monarch-merged.owl owl:Class CHEBI:57470 biolink:NamedThing (2E)-3-(methoxycarbonyl)pent-2-enedioate(2-) monarch-merged.owl owl:Class CHEBI:57512 biolink:NamedThing N-acyl-D-aspartate(2-) monarch-merged.owl owl:Class CHEBI:57516 biolink:NamedThing deoxylimononate D-ring-lactone(2-) monarch-merged.owl owl:Class CHEBI:57536 biolink:NamedThing (7R)-7-(5-carboxy-5-oxopentanamido)cephalosporanate(2-) monarch-merged.owl owl:Class CHEBI:57542 biolink:NamedThing aryl(methyl)malonate(2-) monarch-merged.owl owl:Class CHEBI:57549 biolink:NamedThing N(2)-(carboxylatoacetyl)-D-tryptophanate(2-) monarch-merged.owl owl:Class CHEBI:57558 biolink:NamedThing trans-2,3-epoxysuccinate(2-) monarch-merged.owl owl:Class CHEBI:57621 biolink:NamedThing 2-benzylsuccinate(2-) monarch-merged.owl owl:Class CHEBI:57637 biolink:NamedThing 2-methylene-3-methylsuccinate(2-) monarch-merged.owl owl:Class CHEBI:57680 biolink:NamedThing sinapoyltartronate(2-) monarch-merged.owl owl:Class CHEBI:57698 biolink:NamedThing 2-(acetamidomethylidene)succinate(2-) monarch-merged.owl owl:Class CHEBI:57712 biolink:NamedThing 2-hydroxy-3-oxoadipate(2-) monarch-merged.owl owl:Class CHEBI:57763 biolink:NamedThing limonoate(2-) monarch-merged.owl owl:Class CHEBI:57767 biolink:NamedThing mono(glucosyluronic acid)bilirubin(2-) monarch-merged.owl owl:Class CHEBI:57852 biolink:NamedThing prephenate(2-) monarch-merged.owl owl:Class CHEBI:57859 biolink:NamedThing 5-(3-carboxylato-3-oxoprop-1-en-1-yl)-4,6-dihydroxypyridine-2-carboxylate monarch-merged.owl owl:Class CHEBI:57977 biolink:NamedThing bilirubin(2-) A dicarboxylic acid dianion obtained by deprotonation of the two carboxy groups of bilirubin; major species at pH 7.3. monarch-merged.owl bilirubin IXalpha|bilirubin dianion|2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinyl-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoate -2 C33H34N4O6 InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-14,34-35H,1-2,9-12,15H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/p-2/b26-13-,27-14- BPYKTIZUTYGOLE-IFADSCNNSA-L 582.64630 582.24893 CC1=C(C=C)\C(NC1=O)=C\c1[nH]c(Cc2[nH]c(\C=C3NC(=O)C(C=C)=C/3C)c(C)c2CCC([O-])=O)c(CCC([O-])=O)c1C Beilstein:4083310 chebi_ontology owl:Class CHEBI:57979 biolink:NamedThing 2-(carboxylatomethyl)-5-oxo-2,5-dihydro-2-furoate(2-) monarch-merged.owl owl:Class CHEBI:57987 biolink:NamedThing 2-hydroxyadipate(2-) monarch-merged.owl owl:Class CHEBI:57991 biolink:NamedThing biliverdin(2-) monarch-merged.owl owl:Class CHEBI:57999 biolink:NamedThing 1-carboxylatovinyl carboxylatophosphonate(3-) monarch-merged.owl owl:Class CHEBI:58030 biolink:NamedThing 5-formyl-2-hydroxyhepta-2,4-dienedioate monarch-merged.owl owl:Class CHEBI:58051 biolink:NamedThing 4,5-dihydroxyphthalate(2-) monarch-merged.owl owl:Class CHEBI:58056 biolink:NamedThing 2-methylideneglutarate(2-) monarch-merged.owl owl:Class CHEBI:58085 biolink:NamedThing 2-isopropylmaleate(2-) monarch-merged.owl owl:Class CHEBI:58117 biolink:NamedThing (S)-2-acetamido-6-oxopimelate(2-) monarch-merged.owl owl:Class CHEBI:58137 biolink:NamedThing 3,4-dihydroxyphthalate(2-) monarch-merged.owl owl:Class CHEBI:58157 biolink:NamedThing 2-O-caffeoylglucarate(2-) monarch-merged.owl owl:Class CHEBI:58230 biolink:NamedThing 2-(beta-D-glucopyranosyluronate)-D-glucuronate(2-) monarch-merged.owl owl:Class CHEBI:58304 biolink:NamedThing 2-oxo-2H-pyran-4,6-dicarboxylate monarch-merged.owl owl:Class CHEBI:58346 biolink:NamedThing 2-hydroxy-3-(3-oxoprop-1-enyl)but-2-enedioate monarch-merged.owl owl:Class CHEBI:58358 biolink:NamedThing 4-carboxy-2-hydroxy-cis,cis-muconate 6-semialdehyde(2-) monarch-merged.owl owl:Class CHEBI:58471 biolink:NamedThing bis(beta-glucosyluronate)bilirubin monarch-merged.owl owl:Class CHEBI:58497 biolink:NamedThing N-acyl-L-aspartate(2-) monarch-merged.owl owl:Class CHEBI:58511 biolink:NamedThing D-erythro-3-methylmalate(2-) monarch-merged.owl owl:Class CHEBI:58520 biolink:NamedThing N-succinyl-L-glutamic 5-semialdehyde(2-) monarch-merged.owl owl:Class CHEBI:58540 biolink:NamedThing (Kdo)2-lipid A(6-) (E. coli) monarch-merged.owl owl:Class CHEBI:58627 biolink:NamedThing gibberellin A12(2-) monarch-merged.owl owl:Class CHEBI:58637 biolink:NamedThing 2-hydroxy-6-oxonona-2,4,7-trienedioate monarch-merged.owl owl:Class CHEBI:58689 biolink:NamedThing (1R,6R)-2-(3-carboxylatopropanoyl)-6-hydroxycyclohexa-2,4-diene-1-carboxylate monarch-merged.owl owl:Class CHEBI:58692 biolink:NamedThing (R)-2-benzylsuccinate monarch-merged.owl owl:Class CHEBI:58693 biolink:NamedThing (7R)-7-(4-carboxylatobutanamido)cephalosporanate monarch-merged.owl owl:Class CHEBI:58771 biolink:NamedThing (R)-2-(carboxylatomethyl)-5-oxo-2,5-dihydro-2-furoate monarch-merged.owl owl:Class CHEBI:58776 biolink:NamedThing 2-formylglutarate(2-) monarch-merged.owl owl:Class CHEBI:58777 biolink:NamedThing 2-hydroxymethylglutarate monarch-merged.owl owl:Class CHEBI:58793 biolink:NamedThing 2-O-sinapoyl-D-glucarate(2-) monarch-merged.owl owl:Class CHEBI:58831 biolink:NamedThing iminoaspartate monarch-merged.owl owl:Class CHEBI:58851 biolink:NamedThing 2-methyl-3-oxosuccinate(2-) monarch-merged.owl owl:Class CHEBI:58862 biolink:NamedThing N(2)-(3-carboxylatopropionyl)-L-citrullinate monarch-merged.owl owl:Class CHEBI:58901 biolink:NamedThing 2-(E)-O-feruloyl-D-galactarate(2-) monarch-merged.owl owl:Class CHEBI:58936 biolink:NamedThing 2,4-dihydroxyhept-2-enedioate monarch-merged.owl owl:Class CHEBI:59198 biolink:NamedThing dichlorochromopyrrolate monarch-merged.owl owl:Class CHEBI:59543 biolink:NamedThing coenzyme F420-1(3-) monarch-merged.owl owl:Class CHEBI:59920 biolink:NamedThing coenzyme F420-1(4-) monarch-merged.owl owl:Class CHEBI:60189 biolink:NamedThing 4-(4-deoxy-alpha-D-gluc-4-enosyluronic acid)-D-galacturonate(2-) monarch-merged.owl owl:Class CHEBI:60344 biolink:NamedThing ferroheme b(2-) monarch-merged.owl owl:Class CHEBI:60903 biolink:NamedThing N-(4-aminobenzoyl)-L-glutamate monarch-merged.owl owl:Class CHEBI:61336 biolink:NamedThing C4-dicarboxylate A dicarboxylate that contains four carbon atoms. monarch-merged.owl chebi_ontology owl:Class CHEBI:61509 biolink:NamedThing N-acetyl-L-2-aminoadipate(2-) monarch-merged.owl owl:Class CHEBI:61706 biolink:NamedThing dinoflagellate luciferin(2-) monarch-merged.owl owl:Class CHEBI:61708 biolink:NamedThing oxidized dinoflagellate luciferin(2-) monarch-merged.owl owl:Class CHEBI:61721 biolink:NamedThing chlorophyll b(1-) monarch-merged.owl owl:Class CHEBI:61985 biolink:NamedThing 4-carboxy-2-hydroxymuconate semialdehyde hemiacetal(2-) monarch-merged.owl owl:Class CHEBI:62501 biolink:NamedThing folate(2-) The dicarboxylic acid dianion formed from folic acid by loss of a proton from each of the two carboxy groups in the glutamic acid moiety. monarch-merged.owl N-(4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}benzoyl)-L-glutamate(2-)|pteroyl-L-glutamate|pteroylglutamate|folate|pteroyl-L-monoglutamate -2 C19H17N7O6 InChI=1S/C19H19N7O6/c20-19-25-15-14(17(30)26-19)23-11(8-22-15)7-21-10-3-1-9(2-4-10)16(29)24-12(18(31)32)5-6-13(27)28/h1-4,8,12,21H,5-7H2,(H,24,29)(H,27,28)(H,31,32)(H3,20,22,25,26,30)/p-2/t12-/m0/s1 OVBPIULPVIDEAO-LBPRGKRZSA-L 439.38160 439.12513 Nc1nc2ncc(CNc3ccc(cc3)C(=O)N[C@@H](CCC([O-])=O)C([O-])=O)nc2c(=O)[nH]1 PMCID:PMC8181341|PMID:34051149|MetaCyc:CPD-12826 chebi_ontology owl:Class CHEBI:62814 biolink:NamedThing heme d cis-diol(2-) monarch-merged.owl owl:Class CHEBI:65340 biolink:NamedThing 5-formyltetrahydrofolate(2-) monarch-merged.owl owl:Class CHEBI:66945 biolink:NamedThing 4-nitro-6-oxohepta-2,4-dienedioate monarch-merged.owl owl:Class CHEBI:67139 biolink:NamedThing (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate(2-) monarch-merged.owl owl:Class CHEBI:68437 biolink:NamedThing 5,6,7,8-tetrahydrofolate(2-) monarch-merged.owl owl:Class CHEBI:71606 biolink:NamedThing salvianin(2-) monarch-merged.owl owl:Class CHEBI:73036 biolink:NamedThing 4-hydroxy-2-oxoheptanedioate monarch-merged.owl owl:Class CHEBI:73706 biolink:NamedThing bromosuccinate monarch-merged.owl owl:Class CHEBI:74361 biolink:NamedThing 5-oxo-delta-bilirubin(2-) monarch-merged.owl owl:Class CHEBI:74362 biolink:NamedThing 15-oxo-beta-bilirubin(2-) monarch-merged.owl owl:Class CHEBI:76281 biolink:NamedThing tetradecanedioate(2-) monarch-merged.owl owl:Class CHEBI:76283 biolink:NamedThing sebacate(2-) A dicarboxylic acid dianion obtained by deprotonation of both carboxy groups of suberic acid; major species at pH 7.3. monarch-merged.owl decanedioate|sebacate|decanedioate(2-)|C10-DCA(2-) -2 C10H16O4 InChI=1S/C10H18O4/c11-9(12)7-5-3-1-2-4-6-8-10(13)14/h1-8H2,(H,11,12)(H,13,14)/p-2 CXMXRPHRNRROMY-UHFFFAOYSA-L 200.23160 200.10596 [O-]C(=O)CCCCCCCCC([O-])=O MetaCyc:CPD-3623|Reaxys:3906061|PMID:21886157 chebi_ontology owl:Class CHEBI:76981 biolink:NamedThing 3-[(1-carboxylatovinyl)oxy]benzoate(2-) monarch-merged.owl owl:Class CHEBI:77633 biolink:NamedThing isonocardicin A(2-) monarch-merged.owl owl:Class CHEBI:77658 biolink:NamedThing nocardicin A(2-) monarch-merged.owl owl:Class CHEBI:78208 biolink:NamedThing azelaate(2-) monarch-merged.owl owl:Class CHEBI:83389 biolink:NamedThing furan-2,5-dicarboxylate monarch-merged.owl owl:Class CHEBI:84981 biolink:NamedThing 2-aminoadipate(2-) A dicarboxylic acid dianion that is the conjugate base of 2-aminoadipic acid. monarch-merged.owl 2-aminohexanedioate|alpha-aminoadipate -2 C6H9NO4 InChI=1S/C6H11NO4/c7-4(6(10)11)2-1-3-5(8)9/h4H,1-3,7H2,(H,8,9)(H,10,11)/p-2 OYIFNHCXNCRBQI-UHFFFAOYSA-L 159.14110 159.05425 NC(CCCC([O-])=O)C([O-])=O chebi_ontology owl:Class CHEBI:85271 biolink:NamedThing (Kdo)2-lipid A 1-diphosphate(7-) (E. coli) monarch-merged.owl owl:Class CHEBI:85275 biolink:NamedThing (3E)-phycocyanobilin(2-) monarch-merged.owl owl:Class CHEBI:85276 biolink:NamedThing (3E)-phycoerythrobilin(2-) monarch-merged.owl owl:Class CHEBI:87507 biolink:NamedThing (4Z)-2-oxohept-4-enedioate monarch-merged.owl owl:Class CHEBI:87810 biolink:NamedThing 3-methylmalate(2-) monarch-merged.owl owl:Class CHEBI:90722 biolink:NamedThing 20-hydroxy-20-oxoleukotriene B4(2-) monarch-merged.owl owl:Class CHEBI:11412 biolink:NamedThing (2R,3S,4S)-leucocyanidin monarch-merged.owl owl:Class CHEBI:138176 biolink:NamedThing (2R,3S,4S)-leucoanthocyanidin monarch-merged.owl owl:Class CHEBI:15758 biolink:NamedThing leucocyanidin monarch-merged.owl owl:Class CHEBI:11421 biolink:NamedThing 2,3-dihydrodipicolinate(2-) monarch-merged.owl owl:Class CHEBI:11438 biolink:NamedThing 2,4-dichloro-cis,cis-muconate(2-) monarch-merged.owl owl:Class CHEBI:38412 biolink:NamedThing 2,4-dichloromuconate(2-) monarch-merged.owl owl:Class CHEBI:11449 biolink:NamedThing 2,5-didehydro-D-gluconate monarch-merged.owl owl:Class CHEBI:35179 biolink:NamedThing 2-oxo monocarboxylic acid anion An oxo monocarboxylic acid anion in which the oxo group is located at the 2-position. monarch-merged.owl 2-oxo monocarboxylic acid anions|2-oxo monocarboxylate|a 2-oxocarboxylate -1 C2O3R 72.020 71.98474 [O-]C(=O)C([*])=O MetaCyc:2-Oxo-carboxylates|PMID:10850983 CHEBI:70795 chebi_ontology owl:Class CHEBI:11561 biolink:NamedThing 2-dehydropantoate monarch-merged.owl owl:Class CHEBI:11641 biolink:NamedThing 2-oxopent-4-enoate monarch-merged.owl owl:Class CHEBI:11851 biolink:NamedThing 3-methyl-2-oxobutanoate monarch-merged.owl owl:Class CHEBI:133493 biolink:NamedThing omega-(methylthio)-2-oxocarboxylate monarch-merged.owl owl:Class CHEBI:15360 biolink:NamedThing acetylpyruvate monarch-merged.owl owl:Class CHEBI:15361 biolink:NamedThing pyruvate A 2-oxo monocarboxylic acid anion that is the conjugate base of pyruvic acid, arising from deprotonation of the carboxy group. monarch-merged.owl 2-oxopropanoic acid, ion(1-)|2-oxopropanoate|pyruvate -1 C3H3O3 InChI=1S/C3H4O3/c1-2(4)3(5)6/h1H3,(H,5,6)/p-1 LCTONWCANYUPML-UHFFFAOYSA-M 87.05412 87.00877 CC(=O)C([O-])=O PMID:22006570|Reaxys:3587721|PMID:17190852|PMID:22451307|PMID:21854850|PMID:22311625|PMID:22016370|Gmelin:2502|Beilstein:3587721|CAS:57-60-3|PMID:21823181|UM-BBD_compID:c0159|PMID:22458763|KEGG:C00022|PMID:21603897|PMID:22215378 CHEBI:26462|CHEBI:14987 chebi_ontology owl:Class CHEBI:16763 biolink:NamedThing 2-oxobutanoate monarch-merged.owl owl:Class CHEBI:16769 biolink:NamedThing 2-oxoglutaramate monarch-merged.owl owl:Class CHEBI:16808 biolink:NamedThing 2-dehydro-D-gluconate monarch-merged.owl owl:Class CHEBI:17162 biolink:NamedThing 2-oxooctadecanoate monarch-merged.owl owl:Class CHEBI:17468 biolink:NamedThing (4-bromophenylsulfanyl)pyruvate monarch-merged.owl owl:Class CHEBI:17572 biolink:NamedThing 5-amino-2-oxopentanoate monarch-merged.owl owl:Class CHEBI:17640 biolink:NamedThing 3-(indol-3-yl)pyruvate monarch-merged.owl owl:Class CHEBI:17738 biolink:NamedThing N-methyl-2-oxoglutaramate monarch-merged.owl owl:Class CHEBI:17865 biolink:NamedThing 4-methyl-2-oxopentanoate monarch-merged.owl owl:Class CHEBI:18005 biolink:NamedThing keto-phenylpyruvate monarch-merged.owl owl:Class CHEBI:18253 biolink:NamedThing 5-guanidino-2-oxopentanoate monarch-merged.owl owl:Class CHEBI:28644 biolink:NamedThing 2-oxopentanoate monarch-merged.owl owl:Class CHEBI:28654 biolink:NamedThing 3-methyl-2-oxovalerate monarch-merged.owl owl:Class CHEBI:29055 biolink:NamedThing 3,4-dihydroxyphenylpyruvate monarch-merged.owl owl:Class CHEBI:35177 biolink:NamedThing 2-oxohexanoate monarch-merged.owl owl:Class CHEBI:36242 biolink:NamedThing 3-(4-hydroxyphenyl)pyruvate A 2-oxo monocarboxylic acid anion obtained by removal of a proton from the carboxylic acid group of 3-(4-hydroxyphenyl)pyruvic acid. monarch-merged.owl 4-Hydroxyphenylpyruvate|3-(4-hydroxyphenyl)pyruvate|p-hydroxyphenylpyruvate|3-(4-Hydroxyphenyl)pyruvate|HPP|3-(4-hydroxyphenyl)-2-oxopropanoate|3-(p-hydroxyphenyl)pyruvate -1 C9H7O4 InChI=1S/C9H8O4/c10-7-3-1-6(2-4-7)5-8(11)9(12)13/h1-4,10H,5H2,(H,12,13)/p-1 KKADPXVIOXHVKN-UHFFFAOYSA-M 179.14950 179.03498 Oc1ccc(CC(=O)C([O-])=O)cc1 PMID:14593448|KEGG:C01179|Reaxys:3950858|UM-BBD_compID:c0235|Beilstein:3950858|PMID:11948155 CHEBI:11727|CHEBI:12016|CHEBI:20425|CHEBI:594665|CHEBI:11725 chebi_ontology owl:Class CHEBI:36602 biolink:NamedThing 2-dehydro-L-idonate monarch-merged.owl owl:Class CHEBI:36655 biolink:NamedThing glyoxylate monarch-merged.owl owl:Class CHEBI:51704 biolink:NamedThing glyoxylates monarch-merged.owl owl:Class CHEBI:57479 biolink:NamedThing 2,6-dioxo-6-phenylhexanoate monarch-merged.owl owl:Class CHEBI:57633 biolink:NamedThing (S)-3-(indol-3-yl)-2-oxobutyrate monarch-merged.owl owl:Class CHEBI:57678 biolink:NamedThing 3-mercaptopyruvate monarch-merged.owl owl:Class CHEBI:57735 biolink:NamedThing 2-oxosuccinamate monarch-merged.owl owl:Class CHEBI:57824 biolink:NamedThing oxalurate monarch-merged.owl owl:Class CHEBI:57927 biolink:NamedThing oxaloacetate 4-methyl ester monarch-merged.owl owl:Class CHEBI:57940 biolink:NamedThing 3-sulfonatopyruvate(2-) monarch-merged.owl owl:Class CHEBI:57990 biolink:NamedThing 2-dehydro-3-deoxy-D-gluconate monarch-merged.owl owl:Class CHEBI:58023 biolink:NamedThing (3,5-diiodo-4-oxidophenyl)pyruvate(2-) monarch-merged.owl owl:Class CHEBI:58348 biolink:NamedThing 3-[hydroxy(oxido)phosphoranyl]pyruvate(2-) monarch-merged.owl owl:Class CHEBI:58400 biolink:NamedThing 2-oxophytanate monarch-merged.owl owl:Class CHEBI:58403 biolink:NamedThing 3,5,3'-triiodothyropyruvate monarch-merged.owl owl:Class CHEBI:58556 biolink:NamedThing (S)-2-amino-6-oxopimelate monarch-merged.owl owl:Class CHEBI:58586 biolink:NamedThing 4-hydroxyphenylglyoxylate monarch-merged.owl owl:Class CHEBI:59353 biolink:NamedThing (3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoate monarch-merged.owl owl:Class CHEBI:64788 biolink:NamedThing 3,4-dihydro-4-hydroxyphenylpyruvate monarch-merged.owl owl:Class CHEBI:64789 biolink:NamedThing 3-(4-hydroxycyclohex-2-en-1-ylidene)pyruvate monarch-merged.owl owl:Class CHEBI:64790 biolink:NamedThing tetrahydro-4-hydroxyphenylpyruvate monarch-merged.owl owl:Class CHEBI:65081 biolink:NamedThing 2-oxo-3-(5-oxofuran-2-ylidene)propanoate monarch-merged.owl owl:Class CHEBI:73309 biolink:NamedThing aromatic 2-oxo monocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:74119 biolink:NamedThing (3S)-3-methyl-2-oxo-3-phenylpropanoate monarch-merged.owl owl:Class CHEBI:74408 biolink:NamedThing 3-dimethylallyl-4-hydroxyphenylpyruvate(1-) monarch-merged.owl owl:Class CHEBI:75210 biolink:NamedThing 3,5-dihydroxyphenylglyoxylate monarch-merged.owl owl:Class CHEBI:79192 biolink:NamedThing 6-acetamido-2-oxohexanoate monarch-merged.owl owl:Class CHEBI:79193 biolink:NamedThing 5-acetamidopentanoate monarch-merged.owl owl:Class CHEBI:82904 biolink:NamedThing 2-aminophenylglyoxylate monarch-merged.owl owl:Class CHEBI:91180 biolink:NamedThing (R)-3-(indol-3-yl)-2-oxobutyrate monarch-merged.owl owl:Class CHEBI:20067 biolink:NamedThing 3-hydroxybutyric acid A straight-chain 3-hydroxy monocarboxylic acid comprising a butyric acid core with a single hydroxy substituent in the 3- position; a ketone body whose levels are raised during ketosis, used as an energy source by the brain during fasting in humans. Also used to synthesise biodegradable plastics. monarch-merged.owl BHBA|3 HBA|beta-hydroxy-n-butyric acid|3-hydroxybutanoic acid|3-Hydroxybuttersaeure|beta-Hydroxybuttersaeure|beta-hydroxybutanoic acid|DL-beta-Hydroxybutyric acid|(1)-3-Hydroxybutyric acid|beta-hydroxybutyric acid|beta-Hydroxy-n-butyric acid|3-OH-butyric acid 0 C4H8O3 InChI=1S/C4H8O3/c1-3(5)2-4(6)7/h3,5H,2H2,1H3,(H,6,7) WHBMMWSBFZVSSR-UHFFFAOYSA-N 104.10452 104.04734 CC(O)CC(O)=O Reaxys:773861|PMID:10855969|PMID:17579249|Wikipedia:3-hydroxybutyrate|Beilstein:773861|PMID:17190852|LIPID_MAPS_instance:LMFA01050005|PMID:6061736|HMDB:HMDB0000357|CAS:300-85-6 chebi_ontology owl:Class CHEBI:49060 biolink:NamedThing 2,3,4-trihydroxybutanoic acid monarch-merged.owl owl:Class CHEBI:114953 biolink:NamedThing (2S)-2-ammonio-5-{[iminio(methylamino)methyl]amino}pentanoate monarch-merged.owl owl:Class CHEBI:60251 biolink:NamedThing guanidinium ion monarch-merged.owl owl:Class CHEBI:30087 biolink:NamedThing guanidinium monarch-merged.owl owl:Class CHEBI:57289 biolink:NamedThing blasticidin S(1+) monarch-merged.owl owl:Class CHEBI:57505 biolink:NamedThing N-benzoyl-D-argininium-4-nitroanilide(1+) monarch-merged.owl owl:Class CHEBI:57708 biolink:NamedThing benzoylagmatinium monarch-merged.owl owl:Class CHEBI:57840 biolink:NamedThing methylguanidinium monarch-merged.owl owl:Class CHEBI:57848 biolink:NamedThing 1,4-diguanidiniumylbutane monarch-merged.owl owl:Class CHEBI:57854 biolink:NamedThing 4-guanidiniumylbutanal monarch-merged.owl owl:Class CHEBI:58006 biolink:NamedThing Cypridina luciferin(1+) monarch-merged.owl owl:Class CHEBI:58007 biolink:NamedThing streptomycin(3+) monarch-merged.owl owl:Class CHEBI:58016 biolink:NamedThing 1-guanidiniumyl-1-deoxy-scyllo-inositol(1+) monarch-merged.owl owl:Class CHEBI:58059 biolink:NamedThing oxidized Cypridina luciferin(1+) monarch-merged.owl owl:Class CHEBI:58145 biolink:NamedThing agmatinium(2+) monarch-merged.owl owl:Class CHEBI:58291 biolink:NamedThing 1D-1-guanidiniumyl-1-deoxy-3-dehydro-scyllo-inositol(1+) monarch-merged.owl owl:Class CHEBI:58365 biolink:NamedThing 4-guanidiniumylbutanamide(1+) monarch-merged.owl owl:Class CHEBI:58605 biolink:NamedThing 3''-adenylylstreptomycin(2+) monarch-merged.owl owl:Class CHEBI:58644 biolink:NamedThing p-coumaroylagmatine(1+) monarch-merged.owl owl:Class CHEBI:60822 biolink:NamedThing streptothricin F(3+) monarch-merged.owl owl:Class CHEBI:60829 biolink:NamedThing streptothricin D(5+) monarch-merged.owl owl:Class CHEBI:64335 biolink:NamedThing N(1)-aminopropylagmatine(3+) monarch-merged.owl owl:Class CHEBI:83439 biolink:NamedThing iminoarginine(1+) monarch-merged.owl owl:Class CHEBI:90688 biolink:NamedThing metformin(1+) monarch-merged.owl owl:Class CHEBI:21731 biolink:NamedThing N-glycosyl compound A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a nitrogen atom, thus creating a C-N bond. monarch-merged.owl N-glycosides|glycosylamines|N-glycosyl compounds|N-glycoside|glycosylamine chebi_ontology owl:Class CHEBI:15704 biolink:NamedThing 6-alkylamino-7-beta-D-glucosylpurine monarch-merged.owl owl:Class CHEBI:18337 biolink:NamedThing 5-amino-6-(5-phospho-beta-D-ribosylamino)uracil monarch-merged.owl owl:Class CHEBI:18349 biolink:NamedThing N(1)-(5-phospho-D-ribosyl)glycinamide monarch-merged.owl owl:Class CHEBI:18413 biolink:NamedThing 2-formamido-N(1)-(5-phospho-D-ribosyl)acetamidine monarch-merged.owl owl:Class CHEBI:26568 biolink:NamedThing ribosylamine monarch-merged.owl owl:Class CHEBI:26789 biolink:NamedThing streptothricin monarch-merged.owl owl:Class CHEBI:33838 biolink:NamedThing nucleoside An N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents. monarch-merged.owl nucleosides|Nucleoside|a nucleoside 0 C5H8O3R2 116.115 116.04734 [C@H]1([C@H]([C@@H](*)[C@@H](O1)*)O)CO KEGG:C00801|Wikipedia:Nucleoside CHEBI:7647|CHEBI:13661|CHEBI:25611 chebi_ontology owl:Class CHEBI:35269 biolink:NamedThing N-glycosyl amino acid monarch-merged.owl owl:Class CHEBI:36979 biolink:NamedThing N-glycosylpyridine monarch-merged.owl owl:Class CHEBI:38645 biolink:NamedThing N-glycosylzeatin monarch-merged.owl owl:Class CHEBI:39304 biolink:NamedThing coformycins monarch-merged.owl owl:Class CHEBI:60783 biolink:NamedThing nucleoside analogue monarch-merged.owl owl:Class CHEBI:60826 biolink:NamedThing streptothricin acid monarch-merged.owl owl:Class CHEBI:63593 biolink:NamedThing 1-glycosyltriazole monarch-merged.owl owl:Class CHEBI:7091 biolink:NamedThing N-(5-phospho-beta-D-ribosyl)anthranilic acid monarch-merged.owl owl:Class CHEBI:35159 biolink:NamedThing ribose monophosphate monarch-merged.owl owl:Class CHEBI:17284 biolink:NamedThing 5-phospho-D-ribosylamine monarch-merged.owl owl:Class CHEBI:27859 biolink:NamedThing S-methyl-5-thio-alpha-D-ribose 1-phosphate monarch-merged.owl owl:Class CHEBI:35425 biolink:NamedThing D-ribose 1-phosphate monarch-merged.owl owl:Class CHEBI:48582 biolink:NamedThing ADP-D-ribose 1'',2''-cyclic phosphate monarch-merged.owl owl:Class CHEBI:48584 biolink:NamedThing ADP-D-ribose 1''-phosphate monarch-merged.owl owl:Class CHEBI:68820 biolink:NamedThing alpha-D-ribose 1-methylphosphonate 5-phosphate monarch-merged.owl owl:Class CHEBI:72787 biolink:NamedThing 4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate monarch-merged.owl owl:Class CHEBI:73084 biolink:NamedThing N-[(7,8-dihydropterin-6-yl)methyl]-4-(beta-D-ribofuranosyl)aniline 5'-phosphate monarch-merged.owl owl:Class CHEBI:76099 biolink:NamedThing phenyl 5-phosphono-alpha-D-ribofuranoside monarch-merged.owl owl:Class CHEBI:78679 biolink:NamedThing D-ribose 5-phosphate monarch-merged.owl owl:Class CHEBI:83444 biolink:NamedThing 4-(5-O-phospho-beta-D-ribofuranosyl)phenol monarch-merged.owl owl:Class CHEBI:38337 biolink:NamedThing pyrimidone A pyrimidine carrying one or more oxo substituents. monarch-merged.owl pyrimidones chebi_ontology owl:Class CHEBI:15901 biolink:NamedThing 5,6-dihydrouracil monarch-merged.owl owl:Class CHEBI:17568 biolink:NamedThing uracil A common and naturally occurring pyrimidine nucleobase in which the pyrimidine ring is substituted with two oxo groups at positions 2 and 4. Found in RNA, it base pairs with adenine and replaces thymine during DNA transcription. monarch-merged.owl 2,4(1H,3H)-pyrimidinedione|uracil|Ura|pyrimidine-2,4(1H,3H)-dione|Urazil|Uracil|U|2,4-Dioxopyrimidine|URACIL|2,4-Pyrimidinedione 0 C4H4N2O2 InChI=1S/C4H4N2O2/c7-3-1-2-5-4(8)6-3/h1-2H,(H2,5,6,7,8) ISAKRJDGNUQOIC-UHFFFAOYSA-N 112.08684 112.02728 O=c1cc[nH]c(=O)[nH]1 HMDB:HMDB0000300|PMID:11279060|PMID:15274295|PMID:22299724|PMID:18533995|PMID:22356544|PDBeChem:URA|PMID:12855717|Gmelin:2896|PMID:16834123|PMID:22120518|PMID:22171528|PMID:22685418|PMID:22447672|PMID:22567906|PMID:18815805|KEGG:C00106|KEGG:D00027|DrugBank:DB03419|PMID:22483865|MetaCyc:URACIL|KNApSAcK:C00001513|PMID:22074393|Reaxys:606623|PMID:19175333|PMID:17439666|PMID:22020693|PMID:22237209|Wikipedia:Uracil|Beilstein:606623|CAS:66-22-8|PMID:3654008 CHEBI:9882|CHEBI:46375|CHEBI:27210|CHEBI:15288 chebi_ontology owl:Class CHEBI:17821 biolink:NamedThing thymine monarch-merged.owl owl:Class CHEBI:22693 biolink:NamedThing barbiturates Members of the class of pyrimidones consisting of pyrimidine-2,4,6(1H,3H,5H)-trione (barbituric acid) and its derivatives. Largest group of the synthetic sedative/hypnotics, sharing a characteristic six-membered ring structure. monarch-merged.owl barbiturates|barbituric acids owl:Class CHEBI:27468 biolink:NamedThing 5,6-dihydrothymine monarch-merged.owl owl:Class CHEBI:43254 biolink:NamedThing (4S)-4-hydroxy-3,4-dihydropyrimidin-2(1H)-one monarch-merged.owl chebi_ontology owl:Class CHEBI:46252 biolink:NamedThing 5,6-diaminouracil monarch-merged.owl owl:Class CHEBI:38339 biolink:NamedThing formamidopyrimidine monarch-merged.owl owl:Class CHEBI:36857 biolink:NamedThing 2-hydroxy steroid monarch-merged.owl owl:Class CHEBI:136980 biolink:NamedThing 2-hydroxy-3-O-methyl estrone monarch-merged.owl owl:Class CHEBI:137837 biolink:NamedThing 2-hydroxy-17beta-estradiol 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137924 biolink:NamedThing 2-hydroxyestrone 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:28744 biolink:NamedThing 2-hydroxy-17beta-estradiol monarch-merged.owl owl:Class CHEBI:36859 biolink:NamedThing 2beta-hydroxy steroid monarch-merged.owl owl:Class CHEBI:89268 biolink:NamedThing 2-hydroxyestradiol 3-methyl ether monarch-merged.owl owl:Class CHEBI:11563 biolink:NamedThing 2-deoxy-alpha-D-ribose 1-phosphate monarch-merged.owl owl:Class CHEBI:28542 biolink:NamedThing 2-deoxy-D-ribofuranose 1-phosphate monarch-merged.owl owl:Class CHEBI:1157 biolink:NamedThing isethionic acid monarch-merged.owl owl:Class CHEBI:47901 biolink:NamedThing alkanesulfonic acid Organic derivatives of sulfonic acid in which the sulfo group is linked directly to carbon of an alkyl group. monarch-merged.owl alkylsulfonic acids|alkanesulfonic acids CHEBI:13809|CHEBI:33553 chebi_ontology owl:Class CHEBI:27376 biolink:NamedThing methanesulfonic acid An alkanesulfonic acid in which the alkyl group directly linked to the sulfo functionality is methyl. monarch-merged.owl Methanesulfonic acid|methylsulfonic acid|Methansulfonsaeure|methanesulfonic acid 0 CH4O3S InChI=1S/CH4O3S/c1-5(2,3)4/h1H3,(H,2,3,4) AFVFQIVMOAPDHO-UHFFFAOYSA-N 96.10666 95.98812 CS(O)(=O)=O KEGG:C11145|Gmelin:1681|PMID:24304088|Reaxys:1446024|CAS:75-75-2|MetaCyc:CPD-3746|Beilstein:1446024|PMID:24593036|Wikipedia:Methanesulfonic_acid CHEBI:6813 chebi_ontology owl:Class CHEBI:42465 biolink:NamedThing ethanesulfonic acid monarch-merged.owl owl:Class CHEBI:61958 biolink:NamedThing butane-1-sulfonic acid monarch-merged.owl owl:Class CHEBI:77267 biolink:NamedThing 3-sulfopropanediol monarch-merged.owl owl:Class CHEBI:1159 biolink:NamedThing 2-hydroxyethylphosphonic acid monarch-merged.owl owl:Class CHEBI:26069 biolink:NamedThing phosphonic acids monarch-merged.owl owl:Class CHEBI:127780 biolink:NamedThing phosphonoformic acid monarch-merged.owl owl:Class CHEBI:136674 biolink:NamedThing (acetamidomethyl)phosphonic acid monarch-merged.owl owl:Class CHEBI:136677 biolink:NamedThing [(S)-1-acetamidoethyl]phosphonic acid monarch-merged.owl owl:Class CHEBI:18124 biolink:NamedThing phosphonoacetaldehyde monarch-merged.owl owl:Class CHEBI:28812 biolink:NamedThing (aminomethyl)phosphonic acid monarch-merged.owl owl:Class CHEBI:28915 biolink:NamedThing fosfomycin monarch-merged.owl owl:Class CHEBI:443725 biolink:NamedThing fosmidomycin monarch-merged.owl owl:Class CHEBI:44976 biolink:NamedThing phosphonic acid monarch-merged.owl owl:Class CHEBI:45129 biolink:NamedThing methylphosphonic acid monarch-merged.owl owl:Class CHEBI:5810 biolink:NamedThing hydroxymethylphosphonic acid monarch-merged.owl owl:Class CHEBI:631 biolink:NamedThing 1-hydroxy-2-aminoethylphosphonic acid monarch-merged.owl owl:Class CHEBI:11594 biolink:NamedThing 2-coumarate monarch-merged.owl owl:Class CHEBI:23399 biolink:NamedThing coumarate monarch-merged.owl owl:Class CHEBI:32373 biolink:NamedThing 4-coumarate monarch-merged.owl owl:Class CHEBI:47927 biolink:NamedThing 3-coumarate monarch-merged.owl owl:Class CHEBI:132941 biolink:NamedThing 2-hydroxyglutarate A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of 2-hydroxyglutaric acid. monarch-merged.owl 2-hydroxyglutarate anion|2-hydroxyglutaric acid anion chebi_ontology owl:Class CHEBI:36149 biolink:NamedThing 2-hydroxyglutarate(1-) A dicarboxylic acid monoanion resulting from the removal of a proton from one of the carboxylic acid groups of 2-hydroxyglutaric acid. monarch-merged.owl hydrogen 2-hydroxypentanedioate -1 C5H7O5 InChI=1S/C5H8O5/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/p-1 HWXBTNAVRSUOJR-UHFFFAOYSA-M 147.10610 147.02990 [H+].OC(CCC([O-])=O)C([O-])=O chebi_ontology owl:Class CHEBI:18059 biolink:NamedThing lipid 'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids. monarch-merged.owl Lipid|lipids KEGG:C01356 CHEBI:25054|CHEBI:6486|CHEBI:14517 chebi_ontology owl:Class CHEBI:131727 biolink:NamedThing hydroxylipid monarch-merged.owl owl:Class CHEBI:15792 biolink:NamedThing malonate(2-) A dicarboxylic acid dianion obtained by the deprotonation of the carboxy groups of malonic acid. monarch-merged.owl malo|MALONATE ION|(-)OOC-CH2-COO(-)|malonic acid, ion(2-)|malonate|propanedioate|propanedioic acid, ion(2-) -2 C3H2O4 InChI=1S/C3H4O4/c4-2(5)1-3(6)7/h1H2,(H,4,5)(H,6,7)/p-2 OFOBLEOULBTSOW-UHFFFAOYSA-L 102.04558 101.99641 [O-]C(=O)CC([O-])=O Reaxys:3904386|DrugBank:DB02201|KEGG:C00383|PDBeChem:MLI|Gmelin:141932|CAS:156-80-9|Beilstein:3904386 CHEBI:44151|CHEBI:25130|CHEBI:14563 chebi_ontology owl:Class CHEBI:16247 biolink:NamedThing phospholipid A lipid containing phosphoric acid as a mono- or di-ester. The term encompasses phosphatidic acids and phosphoglycerides. monarch-merged.owl a phospholipid derivative|Phospholipid|phospholipids KEGG:C00865 CHEBI:14816|CHEBI:26063|CHEBI:8150 chebi_ontology owl:Class CHEBI:166828 biolink:NamedThing Saccharolipids monarch-merged.owl owl:Class CHEBI:17859 biolink:NamedThing glutaric acid An alpha,omega-dicarboxylic acid that is a linear five-carbon dicarboxylic acid. monarch-merged.owl 1,3-Propanedicarboxylic acid|Glutarsaeure|1,5-pentanedioic acid|Pentanedioic acid|GLUTARIC ACID|Glutaric acid|pentanedioic acid 0 C5H8O4 InChI=1S/C5H8O4/c6-4(7)2-1-3-5(8)9/h1-3H2,(H,6,7)(H,8,9) JFCQEDHGNNZCLN-UHFFFAOYSA-N 132.11462 132.04226 OC(=O)CCCC(O)=O Beilstein:1209725|PMID:24297153|KEGG:C00489|PMID:24587932|DrugBank:DB03553|PDBeChem:GUA|Gmelin:26809|Wikipedia:Glutaric_acid|KNApSAcK:C00001184|Reaxys:1209725|HMDB:HMDB0000661|LIPID_MAPS_instance:LMFA01170046|PMID:24900967|CAS:110-94-1 CHEBI:5434|CHEBI:43097|CHEBI:24330 chebi_ontology owl:Class CHEBI:24026 biolink:NamedThing fatty alcohol An aliphatic alcohol consisting of a chain of 3 to greater than 27 carbon atoms. Fatty alcohols may be saturated or unsaturated and may be branched or unbranched. monarch-merged.owl fatty alcohols|Fettalkohole|Fettalkohol|alcool gras|fatty alcohol 0 HOR 17.007 17.00274 O[*] LIPID_MAPS_class:LMFA05|Wikipedia:Fatty_alcohol|MetaCyc:Fatty-Alcohols chebi_ontology owl:Class CHEBI:24913 biolink:NamedThing isoprenoid Any lipid formally derived from isoprene (2-methylbuta-1,3-diene), the skeleton of which can generally be discerned in repeated occurrence in the molecule. The skeleton of isoprenoids may differ from strict additivity of isoprene units by loss or shift of a fragment, commonly a methyl group. The class includes both hydrocarbons and oxygenated derivatives. monarch-merged.owl isoprenoids|isoprenoid PMID:12769708|PMID:19219049|LIPID_MAPS_class:LMPR01 chebi_ontology owl:Class CHEBI:26739 biolink:NamedThing sphingolipid Sphingolipids are a complex family of compounds that share a common structural feature, a sphingoid base backbone. monarch-merged.owl sphingolipids chebi_ontology owl:Class CHEBI:29348 biolink:NamedThing fatty amide monarch-merged.owl owl:Class CHEBI:30794 biolink:NamedThing malonic acid An alpha,omega-dicarboxylic acid in which the two carboxy groups are separated by a single methylene group. monarch-merged.owl H2malo|HOOC-CH2-COOH|Malonic acid|propanedioic acid|MALONIC ACID|Propanedioic acid 0 C3H4O4 InChI=1S/C3H4O4/c4-2(5)1-3(6)7/h1H2,(H,4,5)(H,6,7) OFOBLEOULBTSOW-UHFFFAOYSA-N 104.06146 104.01096 OC(=O)CC(O)=O Reaxys:1751370|Beilstein:1751370|KEGG:C00383|Wikipedia:Malonic_acid|Gmelin:2550|KNApSAcK:C00001193|CAS:141-82-2|PMID:22770225|DrugBank:DB02175|MetaCyc:MALONATE|HMDB:HMDB0000691|PDBeChem:MLA|LIPID_MAPS_instance:LMFA01170041 CHEBI:6660|CHEBI:25132|CHEBI:44060 chebi_ontology owl:Class CHEBI:35341 biolink:NamedThing steroid Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene which is a triterpene.|Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene, so may be considered as triterpenoids. monarch-merged.owl a steroid|steroids|Steroid 0 C19H31R 259.450 259.24258 C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CCCC4)C MetaCyc:Steroids|KEGG:C00377 CHEBI:26768|CHEBI:9263|CHEBI:13687 chebi_ontology owl:Class CHEBI:35740 biolink:NamedThing liposaccharide monarch-merged.owl liposaccharides chebi_ontology owl:Class CHEBI:35741 biolink:NamedThing glycerolipid Any member of the group of lipids containing a common glycerol backbone to which at least one fatty acid-derived group is attached. monarch-merged.owl glycerolipids PMID:18606873 chebi_ontology owl:Class CHEBI:46895 biolink:NamedThing lipopeptide monarch-merged.owl owl:Class CHEBI:50160 biolink:NamedThing steroid acid anion Any anion formed by loss of a proton from a steroid acid. monarch-merged.owl steroid acid anions chebi_ontology owl:Class CHEBI:59240 biolink:NamedThing phthiocerol A monarch-merged.owl owl:Class CHEBI:61051 biolink:NamedThing lipid hydroperoxide A peroxol that is the primary oxygenated product of a polyunsaturated fatty acid. monarch-merged.owl lipid hydroperoxides|a hydroperoxy-polyunsaturated fatty acid 0 HO2R 33.00670 32.99765 OO[*] KEGG:C01025 chebi_ontology owl:Class CHEBI:61384 biolink:NamedThing sulfolipid A compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid. monarch-merged.owl sulfolipids chebi_ontology owl:Class CHEBI:61697 biolink:NamedThing fatty acid derivative Any organic molecular entity derived from a fatty acid. monarch-merged.owl fatty acid derivatives|FA derivative|FA derivatives chebi_ontology owl:Class CHEBI:62937 biolink:NamedThing icosanoid anion The carboxylic acid anion that is the conjugate base of an icosanoid, formed when the carboxy group is deprotonated. monarch-merged.owl icosanoid anions|eicosanoid anion|icosanoid anion|eicosanoid anions chebi_ontology owl:Class CHEBI:64611 biolink:NamedThing ether lipid A lipid similar in structure to a glycerolipid but in which one or more of the carbon atoms on glycerol is bonded to an alkyl chain via an ether linkage, as opposed to the usual ester linkage. monarch-merged.owl ether glycerolipids|ether lipids|ether glycerolipid PMID:22348073|PMID:22609598|PMID:22366205|Wikipedia:Ether_lipid|PMID:22114698|PMID:22148427|PMID:22506086|PMID:22306069|PMID:21309516 chebi_ontology owl:Class CHEBI:67197 biolink:NamedThing endocannabinoid monarch-merged.owl owl:Class CHEBI:68946 biolink:NamedThing alpha-dimorphecolic acid monarch-merged.owl owl:Class CHEBI:741548 biolink:NamedThing ethylmalonic acid A dicarboxylic acid obtained by substitution of one of the methylene hydrogens of malonic acid by an ethyl group. monarch-merged.owl ethylpropanedioic acid|2-ethylmalonic acid|alpha-carboxybutyric acid|1,1-propanedicarboxylic acid 0 C5H8O4 InChI=1S/C5H8O4/c1-2-3(4(6)7)5(8)9/h3H,2H2,1H3,(H,6,7)(H,8,9) UKFXDFUAPNAMPJ-UHFFFAOYSA-N 132.11460 132.04226 CCC(C(O)=O)C(O)=O PMID:22133302|PMID:20187168|PMID:23161776|CAS:516-05-2|Reaxys:774334|PMID:6860317|HMDB:HMDB0000622|CAS:601-75-2 chebi_ontology owl:Class CHEBI:77636 biolink:NamedThing fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:15469 biolink:NamedThing alk-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:116314 biolink:NamedThing oleamide monarch-merged.owl owl:Class CHEBI:143129 biolink:NamedThing primary fatty amide monarch-merged.owl owl:Class CHEBI:11656 biolink:NamedThing 2-succinyl-6-hydroxycyclohexa-2,4-diene-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:35692 biolink:NamedThing dicarboxylic acid Any carboxylic acid containing two carboxy groups. monarch-merged.owl Dicarboxylic acid|dicarboxylic acids KEGG:C02028 CHEBI:4501|CHEBI:23692|CHEBI:36172 chebi_ontology owl:Class CHEBI:131963 biolink:NamedThing 2-(phosphinomethylidene)succinic acid monarch-merged.owl owl:Class CHEBI:132249 biolink:NamedThing (-)-DCA-CC monarch-merged.owl owl:Class CHEBI:132250 biolink:NamedThing (+)-DCA-CC monarch-merged.owl owl:Class CHEBI:134531 biolink:NamedThing polyunsaturated dicarboxylic acid monarch-merged.owl owl:Class CHEBI:134534 biolink:NamedThing 2-(omega-methylthio)alkylmaleic acid monarch-merged.owl owl:Class CHEBI:136437 biolink:NamedThing 3,4-bis(7-chloroindol-3-yl)-2,5-diiminohexanedioic acid monarch-merged.owl owl:Class CHEBI:137287 biolink:NamedThing mycobilin a monarch-merged.owl owl:Class CHEBI:137297 biolink:NamedThing mycobilin b monarch-merged.owl owl:Class CHEBI:137298 biolink:NamedThing biliverdin beta monarch-merged.owl owl:Class CHEBI:137299 biolink:NamedThing biliverdin delta monarch-merged.owl owl:Class CHEBI:137333 biolink:NamedThing anaerobilin monarch-merged.owl owl:Class CHEBI:137822 biolink:NamedThing hyodeoxycholic acid 6-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137829 biolink:NamedThing hyocholic acid 6-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137921 biolink:NamedThing lithocholic acid 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:138402 biolink:NamedThing 4,4'-disulfanyldibutanoic acid monarch-merged.owl owl:Class CHEBI:15661 biolink:NamedThing (2E)-2-(methoxycarbonylmethyl)but-2-enedioic acid monarch-merged.owl owl:Class CHEBI:15663 biolink:NamedThing (2E)-3-(methoxycarbonyl)pent-2-enedioic acid monarch-merged.owl owl:Class CHEBI:15849 biolink:NamedThing aryl(methyl)malonic acid monarch-merged.owl owl:Class CHEBI:16054 biolink:NamedThing 2-benzylsuccinic acid monarch-merged.owl owl:Class CHEBI:16093 biolink:NamedThing 2-methylene-3-methylsuccinic acid monarch-merged.owl owl:Class CHEBI:16210 biolink:NamedThing sinapoyltartronic acid monarch-merged.owl owl:Class CHEBI:16253 biolink:NamedThing 2-(acetamidomethylidene)succinic acid monarch-merged.owl owl:Class CHEBI:16419 biolink:NamedThing limonoic acid monarch-merged.owl owl:Class CHEBI:16483 biolink:NamedThing isonocardicin A monarch-merged.owl owl:Class CHEBI:16513 biolink:NamedThing hydroxymalonic acid monarch-merged.owl owl:Class CHEBI:16600 biolink:NamedThing mesaconic acid monarch-merged.owl owl:Class CHEBI:16990 biolink:NamedThing bilirubin IXalpha A member of the class of biladienes that is a linear tetrapyrrole with the dipyrrole units being of both exovinyl and endovinyl type. A product of heme degradation, it is produced in the reticuloendothelial system by the reduction of biliverdin and transported to the liver as a complex with serum albumin. monarch-merged.owl 3,18-diethenyl-2,7,13,17-tetramethyl-1,19-dioxo-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoic acid|bilirubin|2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinyl-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoic acid|Bilirubin|1,10,19,22,23,24-hexahydro-2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinylbiline-8,12-dipropionic acid|2,17-diethenyl-1,10,19,22,23,24-hexahydro-3,7,13,18-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoic acid|bilirubin(Z,Z)|bilirubin-IXalpha|8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-3,18-divinylbiladiene-ac-1,19(21H,24H)-dione 0 C33H36N4O6 InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-14,34-35H,1-2,9-12,15H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14- BPYKTIZUTYGOLE-IFADSCNNSA-N 584.66230 584.26348 CC1=C(C=C)\C(NC1=O)=C\c1[nH]c(Cc2[nH]c(\C=C3NC(=O)C(C=C)=C/3C)c(C)c2CCC(O)=O)c(CCC(O)=O)c1C CAS:635-65-4|KEGG:C00486|PMID:23763371|PMID:8605219|PMID:9587403|Wikipedia:Bilirubin|Reaxys:74376|KNApSAcK:C00029828|MetaCyc:BILIRUBIN|HMDB:HMDB0000054|Beilstein:74376|PMID:18442622|PMID:12799017|Gmelin:411033 CHEBI:22870|CHEBI:3099|CHEBI:13898 chebi_ontology owl:Class CHEBI:17207 biolink:NamedThing 2-methylideneglutaric acid monarch-merged.owl owl:Class CHEBI:17275 biolink:NamedThing 2-isopropylmaleic acid monarch-merged.owl owl:Class CHEBI:17381 biolink:NamedThing porphobilinogen A dicarboxylic acid that is pyrole bearing aminomethyl, carboxymethyl and 2-carboxyethyl substituents at positions 2, 3 and 4 respectively. monarch-merged.owl 3-[5-(aminomethyl)-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid|Porphobilinogen 0 C10H14N2O4 InChI=1S/C10H14N2O4/c11-4-8-7(3-10(15)16)6(5-12-8)1-2-9(13)14/h5,12H,1-4,11H2,(H,13,14)(H,15,16) QSHWIQZFGQKFMA-UHFFFAOYSA-N 226.22924 226.09536 NCc1[nH]cc(CCC(O)=O)c1CC(O)=O PDBeChem:PBG|PMID:21627493|PMID:22770225|HMDB:HMDB0000245|PMID:21383008|Reaxys:220051|KEGG:C00931|PMID:22740490|Wikipedia:Porphobilinogen|MetaCyc:PORPHOBILINOGEN|DrugBank:DB02272|KNApSAcK:C00007339|PMID:22279024|PMID:22974111|CAS:487-90-1|Beilstein:220051 CHEBI:44832|CHEBI:14867|CHEBI:26212|CHEBI:8335 chebi_ontology owl:Class CHEBI:17626 biolink:NamedThing citraconic acid monarch-merged.owl owl:Class CHEBI:17711 biolink:NamedThing nocardicin A monarch-merged.owl owl:Class CHEBI:21654 biolink:NamedThing N-acyl-aspartic acid monarch-merged.owl owl:Class CHEBI:22290 biolink:NamedThing aldaric acid monarch-merged.owl owl:Class CHEBI:23741 biolink:NamedThing dihydrodipicolinic acid monarch-merged.owl owl:Class CHEBI:23812 biolink:NamedThing dimethylmaleic acid monarch-merged.owl owl:Class CHEBI:2448 biolink:NamedThing actinorhodin monarch-merged.owl owl:Class CHEBI:24522 biolink:NamedThing heptenedioic acid monarch-merged.owl owl:Class CHEBI:25312 biolink:NamedThing 3-methylmalic acid monarch-merged.owl owl:Class CHEBI:25789 biolink:NamedThing hexenedioic acid monarch-merged.owl owl:Class CHEBI:26094 biolink:NamedThing benzenedicarboxylic acid monarch-merged.owl owl:Class CHEBI:28383 biolink:NamedThing alpha,omega-dicarboxylic acid monarch-merged.owl alpha,omega-dicarboxylic acids|alpha(omega)-Dicarboxylic acid|alpha,omega-Dicarboxylic acid KEGG:C04025 CHEBI:22361|CHEBI:13780|CHEBI:10197 chebi_ontology owl:Class CHEBI:28394 biolink:NamedThing enol-oxaloacetic acid monarch-merged.owl owl:Class CHEBI:28635 biolink:NamedThing 2-isopropylmalic acid monarch-merged.owl owl:Class CHEBI:28731 biolink:NamedThing gibberellin A19 monarch-merged.owl owl:Class CHEBI:28791 biolink:NamedThing isoglutamic acid monarch-merged.owl owl:Class CHEBI:30088 biolink:NamedThing gibberellin A12 monarch-merged.owl owl:Class CHEBI:30838 biolink:NamedThing itaconic acid monarch-merged.owl owl:Class CHEBI:30850 biolink:NamedThing 3-propylmalic acid monarch-merged.owl owl:Class CHEBI:31746 biolink:NamedThing kainic acid monarch-merged.owl owl:Class CHEBI:36112 biolink:NamedThing pyridinedicarboxylic acid monarch-merged.owl owl:Class CHEBI:36129 biolink:NamedThing pentenedioic acid monarch-merged.owl owl:Class CHEBI:36145 biolink:NamedThing oxo dicarboxylic acid Any dicarboxylic acid carrying one or more oxo groups. monarch-merged.owl oxo dicarboxylic acids chebi_ontology owl:Class CHEBI:36164 biolink:NamedThing amino dicarboxylic acid monarch-merged.owl amino dicarboxylic acids chebi_ontology owl:Class CHEBI:36166 biolink:NamedThing 5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:36174 biolink:NamedThing octenedioic acid monarch-merged.owl owl:Class CHEBI:36186 biolink:NamedThing cyclobutanedicarboxylic acid monarch-merged.owl owl:Class CHEBI:36197 biolink:NamedThing pyrandicarboxylic acid monarch-merged.owl owl:Class CHEBI:37245 biolink:NamedThing (E)-3-methylglutaconic acid monarch-merged.owl owl:Class CHEBI:44185 biolink:NamedThing methotrexate monarch-merged.owl Methotrexate|methotrexate|METHOTREXATE|N-(4-{[(2,4-diaminopteridin-6-yl)methyl](methyl)amino}benzoyl)-L-glutamic acid|Trexall|Emtexate|4-amino-N(10)-methylpteroylglutamic acid|MTX|Rheumatrex|4-amino-10-methylfolic acid|Ledertrexate|methotrexatum|metotrexato|N-[4-[[(2,4-diamino-6-pteridinyl)methyl]methylamino]benzoyl]-L-glutamic acid owl:Class CHEBI:44788 biolink:NamedThing 2-succinylbenzoic acid monarch-merged.owl owl:Class CHEBI:45757 biolink:NamedThing (5S)-5-(carboxymethyl)-L-proline monarch-merged.owl owl:Class CHEBI:49075 biolink:NamedThing 2-formylglutaric acid monarch-merged.owl owl:Class CHEBI:49077 biolink:NamedThing 2-hydroxymethylglutaric acid monarch-merged.owl owl:Class CHEBI:49194 biolink:NamedThing 3-(1-carboxyvinyloxy)anthranilic acid monarch-merged.owl owl:Class CHEBI:49197 biolink:NamedThing 2-amino-2-deoxyisochorismic acid monarch-merged.owl owl:Class CHEBI:50263 biolink:NamedThing 2-hydroxydicarboxylic acid Any dicarboxylic acid carrying a hydroxy group on the carbon atom at position alpha to the carboxy group. monarch-merged.owl 2-hydroxydicarboxylic acids|2-Hydroxydicarboxylic acid C3H4O5(CH2)n KEGG:C03668 CHEBI:19636|CHEBI:1154 chebi_ontology owl:Class CHEBI:545687 biolink:NamedThing traumatic acid monarch-merged.owl owl:Class CHEBI:59197 biolink:NamedThing pyrroledicarboxylic acid monarch-merged.owl owl:Class CHEBI:59210 biolink:NamedThing alpha-Neup5Ac-(2->8)-alpha-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-beta-D-Glcp monarch-merged.owl owl:Class CHEBI:60077 biolink:NamedThing luteolin-7-O-[beta-D-glucuronosyl-(1->2)-beta-D-glucuronide] monarch-merged.owl owl:Class CHEBI:61114 biolink:NamedThing N-(4-aminobenzoyl)-L-glutamic acid monarch-merged.owl owl:Class CHEBI:62011 biolink:NamedThing 4-carboxy-2-hydroxymuconate semialdehyde hemiacetal monarch-merged.owl owl:Class CHEBI:66873 biolink:NamedThing C4-dicarboxylic acid Any dicarboxylic acid that contains four carbon atoms. monarch-merged.owl C4-dicarboxylic acids chebi_ontology owl:Class CHEBI:67205 biolink:NamedThing (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid monarch-merged.owl owl:Class CHEBI:70231 biolink:NamedThing phenazine-1,6-dicarboxylic acid monarch-merged.owl owl:Class CHEBI:7274 biolink:NamedThing N-formimidoyl-L-glutamic acid monarch-merged.owl owl:Class CHEBI:73712 biolink:NamedThing bromosuccinic acid monarch-merged.owl owl:Class CHEBI:74621 biolink:NamedThing 5-oxo-delta-bilirubin monarch-merged.owl owl:Class CHEBI:74622 biolink:NamedThing 15-oxo-beta-bilirubin monarch-merged.owl owl:Class CHEBI:77107 biolink:NamedThing 3-[(1-carboxyvinyl)oxy]benzoic acid monarch-merged.owl owl:Class CHEBI:80963 biolink:NamedThing 3-(2'-Methylthio)ethylmalic acid monarch-merged.owl owl:Class CHEBI:80964 biolink:NamedThing 3-(3'-Methylthio)propylmalic acid monarch-merged.owl owl:Class CHEBI:81021 biolink:NamedThing nocardicin C monarch-merged.owl owl:Class CHEBI:81022 biolink:NamedThing isonocardicin C monarch-merged.owl owl:Class CHEBI:84212 biolink:NamedThing furan-2,5-dicarboxylic acid monarch-merged.owl owl:Class CHEBI:90143 biolink:NamedThing N-amidinoaspartic acid monarch-merged.owl owl:Class CHEBI:91315 biolink:NamedThing 2-methylbutanedioic acid A dicarboxylic acid that is butanedioic acid substituted at position 2 by a methyl group. monarch-merged.owl 2-methylbutanedioic acid 0 C5H8O4 InChI=1S/C5H8O4/c1-3(5(8)9)2-4(6)7/h3H,2H2,1H3,(H,6,7)(H,8,9) WXUAQHNMJWJLTG-UHFFFAOYSA-N 132.115 132.04226 OC(=O)C(CC(O)=O)C chebi_ontology owl:Class CHEBI:11684 biolink:NamedThing 3,3',5'-triiodo-L-thyronine monarch-merged.owl owl:Class CHEBI:28774 biolink:NamedThing 3,3',5'-triiodothyronine monarch-merged.owl owl:Class CHEBI:116931 biolink:NamedThing nipecotic acid monarch-merged.owl owl:Class CHEBI:17964 biolink:NamedThing pipecolic acid A piperidinemonocarboxylic acid in which the carboxy group is located at position C-2. monarch-merged.owl pipecolinic acid|piperidine-2-carboxylic acid|2-piperidinecarboxylic acid|homoproline 0 C6H11NO2 InChI=1S/C6H11NO2/c8-6(9)5-3-1-2-4-7-5/h5,7H,1-4H2,(H,8,9) HXEACLLIILLPRG-UHFFFAOYSA-N 129.15700 129.07898 OC(=O)C1CCCCN1 CAS:535-75-1|HMDB:HMDB0000070|Wikipedia:Pipecolic_acid|PMID:22770225|Reaxys:81095|Gmelin:68953|YMDB:YMDB01675|ECMDB:ECMDB21385|Beilstein:112883|Beilstein:81095 CHEBI:26142 chebi_ontology owl:Class CHEBI:30912 biolink:NamedThing 1-piperideine-2-carboxylic acid monarch-merged.owl owl:Class CHEBI:33706 biolink:NamedThing beta-amino acid A non-proteinogenic amino acid in which the amino group is located on the carbon atom at the position beta to the carboxy group. monarch-merged.owl beta-amino acid|beta-amino acids chebi_ontology owl:Class CHEBI:15613 biolink:NamedThing (3S)-3,6-diaminohexanoic acid monarch-merged.owl owl:Class CHEBI:15616 biolink:NamedThing (3S,5S)-3,5-diaminohexanoic acid monarch-merged.owl owl:Class CHEBI:16939 biolink:NamedThing 3-amino-3-(4-hydroxyphenyl)propanoic acid monarch-merged.owl owl:Class CHEBI:16958 biolink:NamedThing beta-alanine A naturally-occurring beta-amino acid comprising propionic acid with the amino group in the 3-position. monarch-merged.owl bAla|3-Aminopropionic acid|H-beta-Ala-OH|beta-aminopropionic acid|beta-alanine|beta-Alanine|3-aminopropanoic acid|BETA-ALANINE|omega-aminopropionic acid 0 C3H7NO2 InChI=1S/C3H7NO2/c4-2-1-3(5)6/h1-2,4H2,(H,5,6) UCMIRNVEIXFBKS-UHFFFAOYSA-N 89.09322 89.04768 NCCC(O)=O PMID:19955842|PMID:20994958|Wikipedia:Beta-Alanine|Reaxys:906793|KEGG:C00099|KEGG:D07561|PMID:22735334|CAS:107-95-9|PMID:16934791|PMID:18613640|Gmelin:49614|DrugBank:DB03107|MetaCyc:B-ALANINE|PMID:20479615|PMID:19239140|PMID:11850512|PDBeChem:BAL|HMDB:HMDB0000056|PMID:20386120|PMID:18528519|PMID:11139233|KNApSAcK:C00001333|PMID:14363188|PMID:12107759|PMID:20199122|PMID:12887142|Beilstein:906793 CHEBI:41050|CHEBI:12389|CHEBI:22821|CHEBI:10343 chebi_ontology owl:Class CHEBI:18383 biolink:NamedThing 3-aminoalanine monarch-merged.owl owl:Class CHEBI:2164 biolink:NamedThing 6-acetamido-3-aminohexanoic acid monarch-merged.owl owl:Class CHEBI:27389 biolink:NamedThing 3-aminoisobutyric acid A beta-amino-acid that is isobutyric acid in which one of the methyl hydrogens is substituted by an amino group. monarch-merged.owl bAib|3-Aminoisobutanoic acid|beta-aminoisobutyric acid|3-Aminoisobutanoate|DL-beta-aminoisobutyric acid|alpha-Methyl-beta-alanine|2-Methyl-beta-alanine|3-aminoisobutyric acid|3-amino-2-methylpropanoic acid|2-(aminomethyl)propionic acid|BAIB|3-Amino-2-methylpropanoate 0 C4H9NO2 InChI=1S/C4H9NO2/c1-3(2-5)4(6)7/h3H,2,5H2,1H3,(H,6,7) QCHPKSFMDHPSNR-UHFFFAOYSA-N 103.11980 103.06333 CC(CN)C(O)=O KEGG:C05145|PMID:18299183|PMID:8307374|HMDB:HMDB0003911|PMID:11785300|CAS:144-90-1|PMID:2274753|Reaxys:1720958|PMID:22735334|Beilstein:1745458|Wikipedia:3-Aminoisobutyric_acid|Beilstein:1720958|PMID:14576092|CAS:10569-72-9|LIPID_MAPS_instance:LMFA01100054|PMID:18600547|MetaCyc:3-AMINO-ISOBUTYRATE|PMID:19735301|PMID:5776546|PMID:19186330|Gmelin:1520758|PMID:639325 CHEBI:359|CHEBI:19959|CHEBI:18712 chebi_ontology owl:Class CHEBI:33094 biolink:NamedThing (S)-3-aminoisobutyric acid monarch-merged.owl owl:Class CHEBI:68528 biolink:NamedThing 3-amino-3-phenylpropanoic acid monarch-merged.owl owl:Class CHEBI:72772 biolink:NamedThing beta-leucine monarch-merged.owl owl:Class CHEBI:85040 biolink:NamedThing (3R)-3,6-diaminohexanoic acid monarch-merged.owl owl:Class CHEBI:85509 biolink:NamedThing 3-amino-N-(trans-3-carbamoyloxirane-2-carbonyl)-L-alanine monarch-merged.owl owl:Class CHEBI:11750 biolink:NamedThing 3-sn-phosphatidyl-L-serine monarch-merged.owl owl:Class CHEBI:18303 biolink:NamedThing phosphatidyl-L-serine monarch-merged.owl owl:Class CHEBI:89823 biolink:NamedThing PS(16:0/18:2(9Z,12Z)) monarch-merged.owl owl:Class CHEBI:90029 biolink:NamedThing PS(16:0/20:4(5Z,8Z,11Z,14Z)) monarch-merged.owl owl:Class CHEBI:1178 biolink:NamedThing (2S)-2-isopropylmalate(2-) monarch-merged.owl owl:Class CHEBI:167114 biolink:NamedThing 2-hydroxydicarboxylate(2-) Any dicarboxylic acid carrying a hydroxy group on the carbon atom at position alpha to the carboxy group. Major species at pH 7.3. monarch-merged.owl a 2-hydroxydicarboxylate -2 C3HO5R2 117.037 116.98240 C(C(*C([O-])=O)(O)*)([O-])=O chebi_ontology owl:Class CHEBI:35121 biolink:NamedThing (2R,3S)-3-isopropylmalate(2-) monarch-merged.owl owl:Class CHEBI:11807 biolink:NamedThing 5-hydroxy-6-methylpyridine-3,4-dicarboxylate monarch-merged.owl owl:Class CHEBI:29959 biolink:NamedThing quinolinate(2-) monarch-merged.owl owl:Class CHEBI:36167 biolink:NamedThing dipicolinate(2-) monarch-merged.owl owl:Class CHEBI:46861 biolink:NamedThing cinchomeronate(2-) monarch-merged.owl owl:Class CHEBI:77620 biolink:NamedThing 5-oxido-6-methylpyridinium-3,4-dicarboxylate monarch-merged.owl owl:Class CHEBI:11814 biolink:NamedThing 3-hydroxy-3-methylglutaryl-CoA monarch-merged.owl owl:Class CHEBI:20060 biolink:NamedThing 3-hydroxy fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:137639 biolink:NamedThing long-chain (3S)-hydroxy fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:137650 biolink:NamedThing short-chain (3S)-hydroxy fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:139236 biolink:NamedThing (R)-3-hydroxypentanoyl-CoA monarch-merged.owl owl:Class CHEBI:139268 biolink:NamedThing (S)-3-hydroxypentanoyl-CoA monarch-merged.owl owl:Class CHEBI:15448 biolink:NamedThing (1-hydroxycyclohexyl)acetyl-CoA monarch-merged.owl owl:Class CHEBI:15449 biolink:NamedThing (2S,3S)-3-hydroxy-2-methylbutanoyl-CoA monarch-merged.owl owl:Class CHEBI:15457 biolink:NamedThing citramalyl-CoA monarch-merged.owl owl:Class CHEBI:15467 biolink:NamedThing (3S)-3-hydroxy-3-methylglutaryl-CoA monarch-merged.owl owl:Class CHEBI:15485 biolink:NamedThing 3-hydroxypimeloyl-CoA monarch-merged.owl owl:Class CHEBI:15505 biolink:NamedThing 6-hydroxycyclohex-1-ene-1-carbonyl-CoA monarch-merged.owl owl:Class CHEBI:27762 biolink:NamedThing 3-hydroxypropanoyl-CoA monarch-merged.owl owl:Class CHEBI:28011 biolink:NamedThing 2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA monarch-merged.owl owl:Class CHEBI:28259 biolink:NamedThing (S)-3-hydroxyisobutyryl-CoA monarch-merged.owl owl:Class CHEBI:28291 biolink:NamedThing 3-hydroxyisovaleryl-CoA monarch-merged.owl owl:Class CHEBI:28632 biolink:NamedThing (S)-3-hydroxyoctanoyl-CoA monarch-merged.owl owl:Class CHEBI:41482 biolink:NamedThing (R)-carnitinyl-CoA betaine monarch-merged.owl owl:Class CHEBI:50583 biolink:NamedThing 3-hydroxyoctadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:52324 biolink:NamedThing 3-hydroxyicosanoyl-CoA monarch-merged.owl owl:Class CHEBI:52325 biolink:NamedThing 3-hydroxydocosanoyl-CoA monarch-merged.owl owl:Class CHEBI:62194 biolink:NamedThing (S)-carnitinyl-CoA betaine monarch-merged.owl owl:Class CHEBI:71443 biolink:NamedThing 3-hydroxyisopentadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:72003 biolink:NamedThing 3-hydroxyisoheptadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:74459 biolink:NamedThing (R)-3-hydroxypalmitoyl-CoA monarch-merged.owl owl:Class CHEBI:76446 biolink:NamedThing (3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76448 biolink:NamedThing (3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76453 biolink:NamedThing (R)-3-hydroxyicosanoyl-CoA monarch-merged.owl owl:Class CHEBI:76454 biolink:NamedThing (R)-3-hydroxystearoyl-CoA monarch-merged.owl owl:Class CHEBI:76459 biolink:NamedThing (R)-3-hydroxybehenoyl-CoA monarch-merged.owl owl:Class CHEBI:76463 biolink:NamedThing (3R)-3-hydroxytetracosanoyl-CoA monarch-merged.owl owl:Class CHEBI:76465 biolink:NamedThing (R)-3-hydroxyhexacosanoyl-CoA monarch-merged.owl owl:Class CHEBI:76472 biolink:NamedThing (R)-3-hydroxyoctacosanoyl-CoA monarch-merged.owl owl:Class CHEBI:76485 biolink:NamedThing (R)-3-hydroxytriacontanoyl-CoA monarch-merged.owl owl:Class CHEBI:76508 biolink:NamedThing (3R,11Z)-3-hydroxyicosenoyl-CoA monarch-merged.owl owl:Class CHEBI:76511 biolink:NamedThing (3R,13Z)-3-hydroxydocosenoyl-CoA monarch-merged.owl owl:Class CHEBI:76522 biolink:NamedThing (3R,15Z)-3-hydroxytetracosenoyl-CoA monarch-merged.owl owl:Class CHEBI:76524 biolink:NamedThing (3R,11Z,14Z)-3-hydroxyicosadienoyl-CoA monarch-merged.owl owl:Class CHEBI:76536 biolink:NamedThing (3R,8Z,11Z,14Z)-3-hydroxyicosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:76541 biolink:NamedThing (3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76543 biolink:NamedThing (3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76549 biolink:NamedThing (3R,11Z,14Z,17Z,20Z)-3-hydroxyhexacosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76553 biolink:NamedThing (3R,13Z,16Z,19Z,22Z)-3-hydroxyoctacosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76556 biolink:NamedThing (3R,15Z,18Z,21Z,24Z)-3-hydroxytriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76564 biolink:NamedThing (3R,17Z,20Z,23Z,26Z)-3-hydroxydotriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76568 biolink:NamedThing (3R,19Z,22Z,25Z,28Z)-3-hydroxytetratriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76570 biolink:NamedThing (3R,21Z,24Z,27Z,30Z)-3-hydroxyhexatriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76621 biolink:NamedThing (3R,23Z,26Z,29Z,32Z)-3-hydroxyoctatriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76637 biolink:NamedThing (3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:76640 biolink:NamedThing (3R,8Z,11Z,14Z,17Z)-3-hydroxyicosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76642 biolink:NamedThing (3R,7Z,10Z,13Z,16Z,19Z)-3-hydroxydocosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76644 biolink:NamedThing (3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76650 biolink:NamedThing (3R,11Z,14Z,17Z,20Z,23Z)-3-hydroxyhexacosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76652 biolink:NamedThing (3R,13Z,16Z,19Z,22Z,25Z)-3-hydroxyoctacosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76654 biolink:NamedThing (3R,15Z,18Z,21Z,24Z,27Z)-3-hydroxytriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76657 biolink:NamedThing (3R,17Z,20Z,23Z,26Z,29Z)-3-hydroxydotriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76659 biolink:NamedThing (3R,19Z,22Z,25Z,28Z,31Z)-3-hydroxytetratriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76666 biolink:NamedThing (3R,21Z,24Z,27Z,30Z,33Z)-3-hydroxyhexatriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76669 biolink:NamedThing (3R,23Z,26Z,29Z,32Z,35Z)-3-hydroxyoctatriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76672 biolink:NamedThing (3R,8Z,11Z,14Z,17Z,20Z,23Z)-hydroxyhexacosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76675 biolink:NamedThing (3R,10Z,13Z,16Z,19Z,22Z,25Z)-3-hydroxyoctacosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76679 biolink:NamedThing (3R,12Z,15Z,18Z,21Z,24Z,27Z)-3-hydroxytriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76682 biolink:NamedThing (3R,14Z,17Z,20Z,23Z,26Z,29Z)-3-hydroxydotriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76684 biolink:NamedThing (3R,16Z,19Z,22Z,25Z,28Z,31Z)-3-hydroxytetratriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76686 biolink:NamedThing (3R,18Z,21Z,24Z,27Z,30Z,33Z)-3-hydroxyhexatriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:85205 biolink:NamedThing 3-hydroxytetradecanoyl-CoA monarch-merged.owl owl:Class CHEBI:137700 biolink:NamedThing 3-carboxy-3-hydroxypropanoyl-CoA monarch-merged.owl owl:Class CHEBI:15380 biolink:NamedThing succinyl-CoA monarch-merged.owl owl:Class CHEBI:15504 biolink:NamedThing pimeloyl-CoA monarch-merged.owl owl:Class CHEBI:15535 biolink:NamedThing oxalyl-CoA monarch-merged.owl owl:Class CHEBI:24333 biolink:NamedThing glutaryl-CoAs monarch-merged.owl owl:Class CHEBI:27969 biolink:NamedThing mesaconyl-CoA monarch-merged.owl owl:Class CHEBI:34528 biolink:NamedThing adipoyl-CoA monarch-merged.owl owl:Class CHEBI:60907 biolink:NamedThing (S)-ethylmalonyl-CoA monarch-merged.owl owl:Class CHEBI:75856 biolink:NamedThing 3-methylfumaryl-CoA monarch-merged.owl owl:Class CHEBI:76339 biolink:NamedThing dodecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:76345 biolink:NamedThing decanedioyl-CoA monarch-merged.owl owl:Class CHEBI:76352 biolink:NamedThing octanedioyl-CoA monarch-merged.owl owl:Class CHEBI:85803 biolink:NamedThing (R)-ethylmalonyl-CoA monarch-merged.owl owl:Class CHEBI:1184 biolink:NamedThing maleylacetic acid monarch-merged.owl owl:Class CHEBI:19672 biolink:NamedThing 4-oxohex-2-enedioic acid monarch-merged.owl owl:Class CHEBI:58955 biolink:NamedThing branched-chain fatty acid anion Any fatty acid anion with a carbon side-chain or isopropyl termination. monarch-merged.owl branched-chain fatty acid anions chebi_ontology owl:Class CHEBI:58956 biolink:NamedThing branched-chain saturated fatty acid anion Any saturated fatty acid anion with a carbon side-chain or isopropyl termination. monarch-merged.owl branched-chain saturated fatty acid anions chebi_ontology owl:Class CHEBI:67013 biolink:NamedThing methyl-branched fatty acid anion Any branched-chain fatty acid anion containing methyl branches only. monarch-merged.owl methyl-branched fatty acid anions chebi_ontology owl:Class CHEBI:87109 biolink:NamedThing juvenile hormone I carboxylate monarch-merged.owl owl:Class CHEBI:59836 biolink:NamedThing oxo fatty acid anion A fatty acid anion carrying one or more oxo substituents monarch-merged.owl oxo fatty acid anions|oxo-FA anions|oxo-FA anion chebi_ontology owl:Class CHEBI:12154 biolink:NamedThing 5-oxohexanoate monarch-merged.owl owl:Class CHEBI:131859 biolink:NamedThing oxo-ETE anion An icosanoid anion arising from deprotonation of the carboxylic acid function of any oxoicosatetraenoic acid. monarch-merged.owl oxoeicosatetraenoates|oxo-ETE anions|oxoeicosatetraenoate|oxoicosatetraenoates|an oxoeicosatetraenoate|oxoicosatetraenoate -1 C20H29O3 317.44250 317.21167 chebi_ontology owl:Class CHEBI:133292 biolink:NamedThing 3-oxo fatty acid anion monarch-merged.owl owl:Class CHEBI:133526 biolink:NamedThing oxodocosahexaenoate monarch-merged.owl owl:Class CHEBI:133556 biolink:NamedThing oxooctadecadienoate monarch-merged.owl owl:Class CHEBI:133974 biolink:NamedThing 12-oxo-6-trans-leukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:25798 biolink:NamedThing oxopentanoates The conjugate base of any oxopentanoic acid. monarch-merged.owl oxopentanoate 0 C5H7O3 115.107 115.03952 chebi_ontology owl:Class CHEBI:57410 biolink:NamedThing 15-oxo-ETE(1-) monarch-merged.owl owl:Class CHEBI:65342 biolink:NamedThing 5-oxo-ETE(1-) A long-chain fatty acid anion that is the conjugate base of 5-oxo-ETE, obtained by deprotonation of the carboxy group. monarch-merged.owl 5-oxo-(6E,8Z,11Z,14Z)-eicosatetraenoate|5-oxo-6E,8Z,11Z,14Z-eicosatetraenoate|5-oxo-6E,8Z,11Z,14Z-icosatetraenoate|(6E,8Z,11Z,14Z)-5-oxoeicosa-6,8,11,14-tetraenoate|(6E,8Z,11Z,14Z)-5-oxoicosa-6,8,11,14-tetraenoate -1 C20H29O3 InChI=1S/C20H30O3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-16-19(21)17-15-18-20(22)23/h6-7,9-10,12-14,16H,2-5,8,11,15,17-18H2,1H3,(H,22,23)/p-1/b7-6-,10-9-,13-12-,16-14+ MEASLHGILYBXFO-XTDASVJISA-M 317.44250 317.21222 CCCCC\C=C/C\C=C/C\C=C/C=C/C(=O)CCCC([O-])=O chebi_ontology owl:Class CHEBI:75231 biolink:NamedThing 12-oxo-ETE(1-) monarch-merged.owl owl:Class CHEBI:75326 biolink:NamedThing 8-oxo-ETE(1-) monarch-merged.owl owl:Class CHEBI:76309 biolink:NamedThing omega-oxo fatty acid anion monarch-merged.owl owl:Class CHEBI:90697 biolink:NamedThing 11-oxo-ETE(1-) monarch-merged.owl owl:Class CHEBI:90781 biolink:NamedThing 13-oxo-9Z,11E-ODE(1-) monarch-merged.owl owl:Class CHEBI:90867 biolink:NamedThing 14-oxo-DoHE(1-) monarch-merged.owl owl:Class CHEBI:11867 biolink:NamedThing 3-oxo-5beta-cholanate monarch-merged.owl owl:Class CHEBI:11893 biolink:NamedThing 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanate monarch-merged.owl owl:Class CHEBI:11901 biolink:NamedThing 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanate monarch-merged.owl owl:Class CHEBI:131878 biolink:NamedThing cholanic acid anion monarch-merged.owl owl:Class CHEBI:133661 biolink:NamedThing hyocholate monarch-merged.owl owl:Class CHEBI:134116 biolink:NamedThing alpha-muricholate monarch-merged.owl owl:Class CHEBI:134119 biolink:NamedThing beta-muricholate monarch-merged.owl owl:Class CHEBI:137661 biolink:NamedThing allocholate monarch-merged.owl owl:Class CHEBI:137662 biolink:NamedThing allodeoxycholate monarch-merged.owl owl:Class CHEBI:15755 biolink:NamedThing 3alpha,7alpha,12beta-trihydroxy-5beta-cholanate monarch-merged.owl owl:Class CHEBI:23614 biolink:NamedThing deoxycholate monarch-merged.owl owl:Class CHEBI:29744 biolink:NamedThing lithocholate monarch-merged.owl owl:Class CHEBI:29747 biolink:NamedThing cholate monarch-merged.owl owl:Class CHEBI:36234 biolink:NamedThing chenodeoxycholate monarch-merged.owl owl:Class CHEBI:58734 biolink:NamedThing (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate monarch-merged.owl owl:Class CHEBI:58750 biolink:NamedThing (25R)-3alpha,7alpha-dihydroxy-5beta-cholestan-26-oate monarch-merged.owl owl:Class CHEBI:58875 biolink:NamedThing hyodeoxycholate monarch-merged.owl owl:Class CHEBI:58876 biolink:NamedThing murideoxycholate monarch-merged.owl owl:Class CHEBI:78604 biolink:NamedThing ursodeoxycholate monarch-merged.owl owl:Class CHEBI:78605 biolink:NamedThing 7-oxolithocholate monarch-merged.owl owl:Class CHEBI:87728 biolink:NamedThing isolithocholate monarch-merged.owl owl:Class CHEBI:87730 biolink:NamedThing 3beta,7alpha-dihydroxy-5beta-cholan-24-oate monarch-merged.owl owl:Class CHEBI:87731 biolink:NamedThing 7alpha-hydroxy-3-oxo-5beta-cholan-24-oate monarch-merged.owl owl:Class CHEBI:87733 biolink:NamedThing 3beta,12alpha-dihydroxy-5beta-cholan-24-oate monarch-merged.owl owl:Class CHEBI:87734 biolink:NamedThing 12alpha-hydroxy-3-oxo-5beta-cholan-24-oate monarch-merged.owl owl:Class CHEBI:87735 biolink:NamedThing 3beta,7alpha,12alpha-trihydroxy-5beta-cholan-24-oate monarch-merged.owl owl:Class CHEBI:87736 biolink:NamedThing 7alpha,12alpha-dihydroxy-3-oxo-5beta-cholan-24-oate monarch-merged.owl owl:Class CHEBI:87747 biolink:NamedThing 7alpha-hydroxy-3-oxochol-4-en-24-oate monarch-merged.owl owl:Class CHEBI:1189 biolink:NamedThing 2-methoxyestrone monarch-merged.owl owl:Class CHEBI:133778 biolink:NamedThing 1alpha-hydroxyandrost-4-ene-3,17-dione monarch-merged.owl owl:Class CHEBI:133930 biolink:NamedThing 5alpha-androst-1-ene-3,17-dione monarch-merged.owl owl:Class CHEBI:136972 biolink:NamedThing 4-methoxyestrone monarch-merged.owl owl:Class CHEBI:137489 biolink:NamedThing 16alpha-hydroxyestrone 16-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137960 biolink:NamedThing 4-hydroxyestrone 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137961 biolink:NamedThing 4-hydroxyestrone 4-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137965 biolink:NamedThing 4-methoxyestrone 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:142842 biolink:NamedThing andrastin A monarch-merged.owl owl:Class CHEBI:142867 biolink:NamedThing andrastin C monarch-merged.owl owl:Class CHEBI:16032 biolink:NamedThing androsterone monarch-merged.owl owl:Class CHEBI:16422 biolink:NamedThing androst-4-ene-3,17-dione monarch-merged.owl owl:Class CHEBI:16814 biolink:NamedThing dehydroepiandrosterone sulfate monarch-merged.owl owl:Class CHEBI:17263 biolink:NamedThing estrone monarch-merged.owl owl:Class CHEBI:17474 biolink:NamedThing estrone 3-sulfate monarch-merged.owl owl:Class CHEBI:22542 biolink:NamedThing androstane-3,17-dione monarch-merged.owl owl:Class CHEBI:2495 biolink:NamedThing adrenosterone monarch-merged.owl owl:Class CHEBI:27576 biolink:NamedThing 19-hydroxyandrost-4-ene-3,17-dione monarch-merged.owl owl:Class CHEBI:27967 biolink:NamedThing 11beta-hydroxyandrost-4-ene-3,17-dione monarch-merged.owl owl:Class CHEBI:28195 biolink:NamedThing 3alpha-hydroxy-5beta-androstan-17-one monarch-merged.owl owl:Class CHEBI:28689 biolink:NamedThing dehydroepiandrosterone An androstanoid that is androst-5-ene substituted by a beta-hydroxy group at position 3 and an oxo group at position 17. It is a naturally occurring steroid hormone produced by the adrenal glands. monarch-merged.owl 3beta-Hydroxyandrost-5-en-17-one|Prasterone|Dehydroepiandrosterone|3-BETA-HYDROXY-5-ANDROSTEN-17-ONE|3beta-hydroxyandrost-5-en-17-one|Intrarosa|DHA|DHEA|Dehydroisoandrosterone 0 C19H28O2 InChI=1S/C19H28O2/c1-18-9-7-13(20)11-12(18)3-4-14-15-5-6-17(21)19(15,2)10-8-16(14)18/h3,13-16,20H,4-11H2,1-2H3/t13-,14-,15-,16-,18-,19-/m0/s1 FMGSKLZLMKYGDP-USOAJAOKSA-N 288.42440 288.20893 [H][C@@]12CC=C3C[C@@H](O)CC[C@]3(C)[C@@]1([H])CC[C@]1(C)C(=O)CC[C@@]21[H] KEGG:C01227|Drug_Central:795|CAS:53-43-0|PMID:24256992|Reaxys:2058110|PDBeChem:AND|PMID:24424045|Wikipedia:Dehydroepiandrosterone|LIPID_MAPS_instance:LMST02020021|MetaCyc:3-BETA-HYDROXYANDROST-5-EN-17-ONE|PMID:14662261|KEGG:D08409|PMID:18634257|HMDB:HMDB0000077|DrugBank:DB01708 CHEBI:20246|CHEBI:86953|CHEBI:1723|CHEBI:11911|CHEBI:40738 chebi_ontology owl:Class CHEBI:28919 biolink:NamedThing estrone 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:37450 biolink:NamedThing 2-methoxyestrone 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:40799 biolink:NamedThing androsta-1,4-diene-3,17-dione monarch-merged.owl owl:Class CHEBI:541975 biolink:NamedThing epiandrosterone monarch-merged.owl owl:Class CHEBI:63641 biolink:NamedThing 9alpha-hydroxyandrosta-1,4-diene-3,17-dione monarch-merged.owl owl:Class CHEBI:799 biolink:NamedThing 3,17-dioxoandrost-4-en-19-al monarch-merged.owl owl:Class CHEBI:81471 biolink:NamedThing 7alpha-hydroxydehydroepiandrosterone monarch-merged.owl owl:Class CHEBI:83865 biolink:NamedThing androst-5-ene-3,17-dione monarch-merged.owl owl:Class CHEBI:85549 biolink:NamedThing 9alpha-hydroxyandrost-4-en-3,17-dione monarch-merged.owl owl:Class CHEBI:85816 biolink:NamedThing (3beta,5alpha,7alpha)-3,7-dihydroxyandrostan-17-one monarch-merged.owl owl:Class CHEBI:87571 biolink:NamedThing 6beta-hydroxyandrost-4-ene-3,17-dione monarch-merged.owl owl:Class CHEBI:87602 biolink:NamedThing 4-hydroxyestrone monarch-merged.owl owl:Class CHEBI:87618 biolink:NamedThing 15alpha-hydroxyestrone monarch-merged.owl owl:Class CHEBI:87626 biolink:NamedThing 6beta-hydroxyestrone monarch-merged.owl owl:Class CHEBI:33853 biolink:NamedThing phenols Organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. monarch-merged.owl phenols|Aryl alcohol|arenols|a phenol 0 C6HOR5 89.072 89.00274 C1(=C(C(=C(C(=C1*)*)*)*)*)O KEGG:C15584|MetaCyc:Phenols|Wikipedia:Phenols CHEBI:25969|CHEBI:2857|CHEBI:13825|CHEBI:13664 chebi_ontology owl:Class CHEBI:132255 biolink:NamedThing N-arachidonoylserotonin monarch-merged.owl owl:Class CHEBI:132256 biolink:NamedThing N-arachidonoyl-2-oxoserotonin monarch-merged.owl owl:Class CHEBI:132749 biolink:NamedThing (S)-nandinine monarch-merged.owl owl:Class CHEBI:134251 biolink:NamedThing guaiacols Any phenol carrying an additional methoxy substituent at the ortho-position. monarch-merged.owl 2-methoxyphenol|catechol monomethyl ether|a guaiacol|1-hydroxy-2-methoxybenzenes|ortho-methoxyphenol|o-methoxyphenol|2-methoxyphenol derivative|2-methoxyphenols|ortho-methoxyphenols|o-methoxyphenols|catechol monomethyl ethers|2-methoxyphenol derivatives 0 C7H4O2R4 120.106 120.02113 C1(=C(C(=C(C(=C1*)*)*)OC)O)* MetaCyc:Guaiacols CHEBI:13645 chebi_ontology owl:Class CHEBI:136975 biolink:NamedThing 4-methoxy-17beta-estradiol monarch-merged.owl owl:Class CHEBI:137404 biolink:NamedThing 5-hydroxybenzimidazole monarch-merged.owl owl:Class CHEBI:137490 biolink:NamedThing 17alpha-estradiol 17-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:138063 biolink:NamedThing coelenterazine h dioxetanone monarch-merged.owl owl:Class CHEBI:139520 biolink:NamedThing phenolic donor monarch-merged.owl owl:Class CHEBI:140184 biolink:NamedThing hydroxyfenbendazole monarch-merged.owl owl:Class CHEBI:150013 biolink:NamedThing emodin anthrone monarch-merged.owl owl:Class CHEBI:15789 biolink:NamedThing 2'-O-methyllicodione monarch-merged.owl owl:Class CHEBI:15795 biolink:NamedThing protoaphin aglucone monarch-merged.owl owl:Class CHEBI:15882 biolink:NamedThing phenol monarch-merged.owl owl:Class CHEBI:16159 biolink:NamedThing sulochrin monarch-merged.owl owl:Class CHEBI:16388 biolink:NamedThing 4-hydroxymandelic acid monarch-merged.owl owl:Class CHEBI:16531 biolink:NamedThing Renilla luciferin monarch-merged.owl owl:Class CHEBI:17069 biolink:NamedThing 3-hydroxybenzyl alcohol monarch-merged.owl owl:Class CHEBI:17192 biolink:NamedThing 3,5-dibromo-4-hydroxybenzonitrile monarch-merged.owl owl:Class CHEBI:1729 biolink:NamedThing 4'-demethyldeoxypodophyllotoxin monarch-merged.owl owl:Class CHEBI:17385 biolink:NamedThing 3-(4-hydroxyphenyl)lactic acid monarch-merged.owl owl:Class CHEBI:17697 biolink:NamedThing N-acetylserotonin monarch-merged.owl owl:Class CHEBI:177917 biolink:NamedThing phenolic steroid monarch-merged.owl a phenolic steroid 0 C18H24O InChI=1S/C18H24O/c1-18-9-2-3-17(18)16-6-4-12-11-13(19)5-7-14(12)15(16)8-10-18/h5,7,11,15-17,19H,2-4,6,8-10H2,1H3 HJKVPZJVBHWFCQ-UHFFFAOYSA-N 256.389 256.18272 C1=C2C(CCC3C4CCCC4(CCC32)C)=CC(=C1)O KEGG:C02453|MetaCyc:PHENOLIC-STEROID chebi_ontology owl:Class CHEBI:17959 biolink:NamedThing oxidized Renilla luciferin monarch-merged.owl owl:Class CHEBI:1800 biolink:NamedThing 4-chloro-2-methylphenol monarch-merged.owl owl:Class CHEBI:18115 biolink:NamedThing 4-hydroxymandelonitrile monarch-merged.owl owl:Class CHEBI:18125 biolink:NamedThing trans-2-coumaric acid monarch-merged.owl owl:Class CHEBI:18346 biolink:NamedThing vanillin monarch-merged.owl owl:Class CHEBI:1883 biolink:NamedThing 4-hydroxystyrene monarch-merged.owl owl:Class CHEBI:21415 biolink:NamedThing L-tyrosyl ester monarch-merged.owl owl:Class CHEBI:22901 biolink:NamedThing bisphenol By usage, the methylenediphenols, HOC6H4CH2C6H4OH, commonly p,p-methylenediphenol, and their substitution products (generally derived from condensation of two equivalent amounts of a phenol with an aldehyde or ketone). The term also includes analogues in the the methylene (or substituted methylene) group has been replaced by a heteroatom. monarch-merged.owl bisphenols Wikipedia:Bisphenol chebi_ontology owl:Class CHEBI:2311 biolink:NamedThing Oplophorus luciferin monarch-merged.owl owl:Class CHEBI:24031 biolink:NamedThing ferulic acids monarch-merged.owl owl:Class CHEBI:24673 biolink:NamedThing hydroxybenzaldehyde monarch-merged.owl owl:Class CHEBI:24676 biolink:NamedThing hydroxybenzoic acid Any benzoic acid carrying one or more phenolic hydroxy groups on the benzene ring. monarch-merged.owl hydroxybenzoic acids|hydroxybenzoic acid owl:Class CHEBI:24677 biolink:NamedThing hydroxybenzophenone monarch-merged.owl owl:Class CHEBI:24678 biolink:NamedThing hydroxybenzoyl-CoA monarch-merged.owl owl:Class CHEBI:24679 biolink:NamedThing hydroxybenzyl alcohol monarch-merged.owl owl:Class CHEBI:24681 biolink:NamedThing hydroxybiphenyls monarch-merged.owl owl:Class CHEBI:24727 biolink:NamedThing hydroxynaphthalene monarch-merged.owl owl:Class CHEBI:24751 biolink:NamedThing hydroxytoluene monarch-merged.owl owl:Class CHEBI:24864 biolink:NamedThing iodothyronine An iodoamino acid in which the amino acid specified is thyronine. monarch-merged.owl iodothyronines chebi_ontology owl:Class CHEBI:25562 biolink:NamedThing nitrophenol monarch-merged.owl owl:Class CHEBI:26195 biolink:NamedThing polyphenol Members of the class of phenols that contain 2 or more benzene rings each of which is substituted by at least one hydroxy group. monarch-merged.owl polyphenols Wikipedia:Polyphenol chebi_ontology owl:Class CHEBI:27175 biolink:NamedThing tyramines Aralkylamino compounds which contain a tyramine skeleton. monarch-merged.owl chebi_ontology owl:Class CHEBI:27565 biolink:NamedThing 4-aminosalicylic acid monarch-merged.owl owl:Class CHEBI:2762 biolink:NamedThing antimycin A monarch-merged.owl owl:Class CHEBI:27949 biolink:NamedThing (E)-sinapaldehyde monarch-merged.owl owl:Class CHEBI:28368 biolink:NamedThing novobiocin monarch-merged.owl owl:Class CHEBI:28478 biolink:NamedThing (2-hydroxyphenyl)acetic acid monarch-merged.owl owl:Class CHEBI:28719 biolink:NamedThing 4-hydroxyphenylglyoxylic acid monarch-merged.owl owl:Class CHEBI:28829 biolink:NamedThing aminophenol A substituted aniline carrying a hydroxy substituent. monarch-merged.owl aminobenzenol|hydroxyaniline|aminophenol owl:Class CHEBI:29081 biolink:NamedThing synephrine monarch-merged.owl owl:Class CHEBI:30661 biolink:NamedThing thyronine A tyrosine derivative where the phenolic hydrogen of tyrosine is substituted by 4-hydroxyphenyl. monarch-merged.owl O-(4-hydroxyphenyl)-DL-tyrosine|2-amino-3-[4-(4-hydroxyphenoxy)phenyl]propanoic acid|thyronine 0 C15H15NO4 InChI=1S/C15H15NO4/c16-14(15(18)19)9-10-1-5-12(6-2-10)20-13-7-3-11(17)4-8-13/h1-8,14,17H,9,16H2,(H,18,19) KKCIOUWDFWQUBT-UHFFFAOYSA-N 273.28394 273.10011 NC(Cc1ccc(Oc2ccc(O)cc2)cc1)C(O)=O Beilstein:2947040|Reaxys:2947040|Gmelin:419747|CAS:1034-10-2|PMID:15643926 chebi_ontology owl:Class CHEBI:3163 biolink:NamedThing bracteatin monarch-merged.owl owl:Class CHEBI:3211 biolink:NamedThing bulbocapnine monarch-merged.owl owl:Class CHEBI:32202 biolink:NamedThing tetracenomycin D3 monarch-merged.owl owl:Class CHEBI:32205 biolink:NamedThing tetracenomycin F1 monarch-merged.owl owl:Class CHEBI:32804 biolink:NamedThing 4-hydroxymandelate monarch-merged.owl owl:Class CHEBI:32818 biolink:NamedThing p-coumaroylagmatine monarch-merged.owl owl:Class CHEBI:33570 biolink:NamedThing benzenediols monarch-merged.owl CHEBI:22711|CHEBI:22705 chebi_ontology owl:Class CHEBI:35164 biolink:NamedThing 2,4'-dihydroxyacetophenone monarch-merged.owl owl:Class CHEBI:36027 biolink:NamedThing stilbenol monarch-merged.owl owl:Class CHEBI:37485 biolink:NamedThing hydroxyanthraquinones monarch-merged.owl owl:Class CHEBI:37507 biolink:NamedThing anthracenol monarch-merged.owl owl:Class CHEBI:38856 biolink:NamedThing halophenol monarch-merged.owl halophenols|halophenol chebi_ontology owl:Class CHEBI:42438 biolink:NamedThing 2-methoxy-4-vinylphenol monarch-merged.owl owl:Class CHEBI:44303 biolink:NamedThing L-m-tyrosine monarch-merged.owl owl:Class CHEBI:46195 biolink:NamedThing paracetamol A member of the class of phenols that is 4-aminophenol in which one of the hydrogens attached to the amino group has been replaced by an acetyl group. monarch-merged.owl p-Acetylaminophenol|Panadol|paracetamol|p-hydroxyphenolacetamide|N-(4-hydroxyphenyl)acetamide|N-acetyl-p-aminophenol|4-acetamidophenol|acetaminofen|acetaminophene|Acetaminophen|paracetamolum|Acenol|Acetaminofen|p-hydroxyacetanilide|4-(Acetylamino)phenol|p-acetaminophenol|Paracetamol|4'-hydroxyacetanilide|Tylenol|APAP|p-acetamidophenol owl:Class CHEBI:47905 biolink:NamedThing coniferyl acetate monarch-merged.owl owl:Class CHEBI:4917 biolink:NamedThing eugenol monarch-merged.owl owl:Class CHEBI:50446 biolink:NamedThing 3-(hydroxyamino)phenol monarch-merged.owl owl:Class CHEBI:50774 biolink:NamedThing 2-decaprenyl-6-methoxyphenol monarch-merged.owl owl:Class CHEBI:50776 biolink:NamedThing 3-decaprenyl-4-hydroxy-5-methoxybenzoic acid monarch-merged.owl owl:Class CHEBI:52678 biolink:NamedThing 3-methoxyphenol monarch-merged.owl owl:Class CHEBI:52681 biolink:NamedThing 5-(pentadeca-8,11,14-trien-1-yl)resorcinol monomethyl ether monarch-merged.owl owl:Class CHEBI:60935 biolink:NamedThing sinapate ester monarch-merged.owl owl:Class CHEBI:62790 biolink:NamedThing 3-nonaprenyl-4-hydroxy-5-methoxybenzoic acid monarch-merged.owl owl:Class CHEBI:64292 biolink:NamedThing coniferyl ester monarch-merged.owl owl:Class CHEBI:64405 biolink:NamedThing F-9775A monarch-merged.owl owl:Class CHEBI:64409 biolink:NamedThing F-9775B monarch-merged.owl owl:Class CHEBI:64413 biolink:NamedThing diorcinol monarch-merged.owl owl:Class CHEBI:64512 biolink:NamedThing emericellin monarch-merged.owl owl:Class CHEBI:64543 biolink:NamedThing fonsecin monarch-merged.owl owl:Class CHEBI:64555 biolink:NamedThing trans-p-coumaryl alcohol monarch-merged.owl owl:Class CHEBI:64689 biolink:NamedThing mycophenolic acid O-acyl-glucuronide monarch-merged.owl owl:Class CHEBI:64977 biolink:NamedThing cichorine monarch-merged.owl owl:Class CHEBI:65228 biolink:NamedThing 3-hydroxyphenyl propanoate monarch-merged.owl owl:Class CHEBI:67153 biolink:NamedThing (+)-larreatricin monarch-merged.owl owl:Class CHEBI:67244 biolink:NamedThing (-)-lariciresinol monarch-merged.owl owl:Class CHEBI:72739 biolink:NamedThing hydroxyisoflavanone monarch-merged.owl owl:Class CHEBI:73029 biolink:NamedThing maackiain monarch-merged.owl owl:Class CHEBI:73343 biolink:NamedThing trans-anol monarch-merged.owl owl:Class CHEBI:73346 biolink:NamedThing trans-coumaryl acetate monarch-merged.owl owl:Class CHEBI:74422 biolink:NamedThing 4'-demethylepipodophyllotoxin monarch-merged.owl owl:Class CHEBI:76103 biolink:NamedThing laudanine monarch-merged.owl owl:Class CHEBI:766 biolink:NamedThing estriol 16-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:77131 biolink:NamedThing sinapic acid monarch-merged.owl owl:Class CHEBI:78590 biolink:NamedThing 7-O-geranyl-2-O,3-dimethylflaviolin monarch-merged.owl owl:Class CHEBI:78631 biolink:NamedThing chroman-6-ol A chromanol that is chromane in which the hydrogen at position 6 is replaced by a hydroxy group. monarch-merged.owl 3,4-dihydro-2H-chromen-6-ol|3,4-dihydrobenzopyran-6-ol 0 C9H10O2 InChI=1S/C9H10O2/c10-8-3-4-9-7(6-8)2-1-5-11-9/h3-4,6,10H,1-2,5H2 GZCJJOLJSBCUNR-UHFFFAOYSA-N 150.17450 150.06808 Oc1ccc2OCCCc2c1 Reaxys:1283166 chebi_ontology owl:Class CHEBI:79196 biolink:NamedThing 3-linalylflaviolin monarch-merged.owl owl:Class CHEBI:82610 biolink:NamedThing 6-linalyl-2-O,3-dimethylflaviolin monarch-merged.owl owl:Class CHEBI:82611 biolink:NamedThing 2-O,3-dimethylflaviolin monarch-merged.owl owl:Class CHEBI:8273 biolink:NamedThing plumbagin monarch-merged.owl owl:Class CHEBI:85970 biolink:NamedThing hydroxyaurone monarch-merged.owl owl:Class CHEBI:8613 biolink:NamedThing psilocin monarch-merged.owl owl:Class CHEBI:87593 biolink:NamedThing 15alpha-hydroxyestradiol monarch-merged.owl owl:Class CHEBI:87598 biolink:NamedThing 7alpha-hydroxyestradiol monarch-merged.owl owl:Class CHEBI:87620 biolink:NamedThing 16beta-hydroxyestradiol monarch-merged.owl owl:Class CHEBI:35618 biolink:NamedThing aromatic ether Any ether in which the oxygen is attached to at least one aryl substituent. monarch-merged.owl chebi_ontology owl:Class CHEBI:136734 biolink:NamedThing (R)-laudanosine monarch-merged.owl owl:Class CHEBI:136735 biolink:NamedThing (R)-tetrahydropapaverine monarch-merged.owl owl:Class CHEBI:137966 biolink:NamedThing 4-methoxy-17beta-estradiol 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:139019 biolink:NamedThing AZD1979 oxetane hydrolysis product monarch-merged.owl owl:Class CHEBI:139154 biolink:NamedThing AZD1979 monarch-merged.owl owl:Class CHEBI:139160 biolink:NamedThing 1-(4-methoxyphenyl)-N-methyl-N-[(3-methyloxetan-3-yl)methyl]methanamine monarch-merged.owl owl:Class CHEBI:139163 biolink:NamedThing 2-{[(4-methoxybenzyl)(methyl)amino]methyl}-2-methylpropane-1,3-diol monarch-merged.owl owl:Class CHEBI:142546 biolink:NamedThing 5-(2-{[2-(2-ethoxyphenoxy)ethyl]amino}propyl)-2-methoxybenzenesulfonamide monarch-merged.owl owl:Class CHEBI:146178 biolink:NamedThing 6-methoxy-11-methyl-1,3,4,9,10,10a-hexahydro-2H-10,4a-(epiminoethano)phenanthrene monarch-merged.owl owl:Class CHEBI:16220 biolink:NamedThing coniferin monarch-merged.owl owl:Class CHEBI:16355 biolink:NamedThing 1-iodo-2-methoxybenzene monarch-merged.owl owl:Class CHEBI:18048 biolink:NamedThing DIMBOA monarch-merged.owl owl:Class CHEBI:18358 biolink:NamedThing methoxsalen monarch-merged.owl owl:Class CHEBI:22998 biolink:NamedThing canadine monarch-merged.owl owl:Class CHEBI:25240 biolink:NamedThing methoxyflavanone monarch-merged.owl owl:Class CHEBI:36491 biolink:NamedThing 2-methoxy-17beta-estradiol 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:39258 biolink:NamedThing diphenyl ether monarch-merged.owl owl:Class CHEBI:48850 biolink:NamedThing alkyloxynaphthalene monarch-merged.owl owl:Class CHEBI:5001 biolink:NamedThing fenofibrate monarch-merged.owl owl:Class CHEBI:51683 biolink:NamedThing methoxybenzenes Any aromatic ether that consists of a benzene skeleton substituted with one or more methoxy groups. monarch-merged.owl methoxybenzene chebi_ontology owl:Class CHEBI:62527 biolink:NamedThing (3-phenoxyphenyl)methanol monarch-merged.owl owl:Class CHEBI:65173 biolink:NamedThing iloperidone monarch-merged.owl owl:Class CHEBI:72740 biolink:NamedThing methoxyisoflavanone monarch-merged.owl owl:Class CHEBI:72763 biolink:NamedThing fumitremorgin C monarch-merged.owl owl:Class CHEBI:72764 biolink:NamedThing 12,13-dihydroxyfumitremorgin C monarch-merged.owl owl:Class CHEBI:72765 biolink:NamedThing verruculogen monarch-merged.owl owl:Class CHEBI:72766 biolink:NamedThing fumitremorgin A monarch-merged.owl owl:Class CHEBI:77051 biolink:NamedThing 2,3,8,9-tetramethoxy-5,6,11,12-tetrahydro-5,11-epiminodibenzo[a,e][8]annulene monarch-merged.owl owl:Class CHEBI:77060 biolink:NamedThing 2,3,8,9-tetramethoxy-13-methyl-5,6,11,12-tetrahydro-5,11-epiminodibenzo[a,e][8]annulene monarch-merged.owl owl:Class CHEBI:81200 biolink:NamedThing (S)-corytuberine monarch-merged.owl owl:Class CHEBI:82681 biolink:NamedThing 3-methoxy-5-methyl-1-naphthoic acid monarch-merged.owl owl:Class CHEBI:85300 biolink:NamedThing N(1),N(8)-bis(sinapoyl)-spermidine monarch-merged.owl owl:Class CHEBI:86990 biolink:NamedThing N-methyl-3-phenyl-3-[4-(trifluoromethyl)phenoxy]propan-1-amine An aromatic ether consisting of 4-trifluoromethylphenol in which the hydrogen of the phenolic hydroxy group is replaced by a 3-(methylamino)-1-phenylpropyl group. monarch-merged.owl N-methyl-3-phenyl-3-[4-(trifluoromethyl)phenoxy]propan-1-amine 0 C17H18F3NO InChI=1S/C17H18F3NO/c1-21-12-11-16(13-5-3-2-4-6-13)22-15-9-7-14(8-10-15)17(18,19)20/h2-10,16,21H,11-12H2,1H3 RTHCYVBBDHJXIQ-UHFFFAOYSA-N 309.32610 309.13405 CNCCC(Oc1ccc(cc1)C(F)(F)F)c1ccccc1 VSDB:1851|LINCS:LSM-1449 chebi_ontology owl:Class CHEBI:133979 biolink:NamedThing prostaglandin D2 2-glyceryl ester monarch-merged.owl owl:Class CHEBI:23482 biolink:NamedThing cyclohexanones Any alicyclic ketone based on a cyclohexane skeleton and its substituted derivatives thereof. monarch-merged.owl owl:Class CHEBI:36130 biolink:NamedThing cyclic terpene ketone monarch-merged.owl owl:Class CHEBI:36140 biolink:NamedThing cyclopentanones monarch-merged.owl owl:Class CHEBI:71188 biolink:NamedThing 3-oxocyclopentanecarbonitrile monarch-merged.owl owl:Class CHEBI:71213 biolink:NamedThing 3-oxocyclopentanecarboxylic acid monarch-merged.owl owl:Class CHEBI:72687 biolink:NamedThing bacilysin monarch-merged.owl owl:Class CHEBI:75507 biolink:NamedThing 3-dehydropyranoside monarch-merged.owl owl:Class CHEBI:85005 biolink:NamedThing anticapsin monarch-merged.owl owl:Class CHEBI:85232 biolink:NamedThing prostaglandin D2 1-glyceryl ester monarch-merged.owl owl:Class CHEBI:36834 biolink:NamedThing 3-hydroxy steroid Any hydroxy steroid carrying a hydroxy group at position 3. monarch-merged.owl 3-hydroxy steroids chebi_ontology owl:Class CHEBI:137907 biolink:NamedThing 2-hydroxy-17beta-estradiol 2-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137917 biolink:NamedThing 4-hydroxy-17beta-estradiol 4-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:15889 biolink:NamedThing sterol Any 3-hydroxy steroid whose skeleton is closely related to cholestan-3-ol (additional carbon atoms may be present in the side chain). monarch-merged.owl 3-hydroxysteroids|sterols|a sterol|Sterol 0 C19H31OR 275.450 275.23749 C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CCC(C4)O)C LIPID_MAPS_class:LMST01|Wikipedia:Sterol|MetaCyc:Sterols|KEGG:C00370 CHEBI:13688|CHEBI:9266|CHEBI:15114|CHEBI:26771 chebi_ontology owl:Class CHEBI:17160 biolink:NamedThing 17alpha-estradiol monarch-merged.owl owl:Class CHEBI:23965 biolink:NamedThing estradiol A 3-hydroxy steroid that is estra-1,3,5(10)-triene substituted by hydroxy groups at positions 3 and 17. monarch-merged.owl estra-1,3,5(10)-triene-3,17-diol|oestradiol 0 C18H24O2 InChI=1S/C18H24O2/c1-18-9-8-14-13-5-3-12(19)10-11(13)2-4-15(14)16(18)6-7-17(18)20/h3,5,10,14-17,19-20H,2,4,6-9H2,1H3/t14-,15-,16+,17?,18+/m1/s1 VOXZDWNPVJITMN-WKUFJEKOSA-N 272.38196 272.17763 [H][C@]12CC[C@]3(C)C(O)CC[C@@]3([H])[C@]1([H])CCc1cc(O)ccc21 PMID:10696569|Wikipedia:Estradiol|PMID:24084694 CHEBI:42364 chebi_ontology owl:Class CHEBI:27727 biolink:NamedThing androstane-3,17-diol monarch-merged.owl owl:Class CHEBI:27974 biolink:NamedThing estriol monarch-merged.owl owl:Class CHEBI:28955 biolink:NamedThing 2-methoxy-17beta-estradiol monarch-merged.owl owl:Class CHEBI:42156 biolink:NamedThing 17-epiestriol monarch-merged.owl owl:Class CHEBI:4903 biolink:NamedThing 17alpha-ethynylestradiol monarch-merged.owl owl:Class CHEBI:50168 biolink:NamedThing 3-hydroxypregnan-20-one monarch-merged.owl owl:Class CHEBI:791 biolink:NamedThing 17beta-estradiol 17-glucosiduronic acid monarch-merged.owl owl:Class CHEBI:47789 biolink:NamedThing 7-oxo steroid monarch-merged.owl owl:Class CHEBI:137062 biolink:NamedThing 7-oxo-5alpha-cholestan-3beta-ol monarch-merged.owl owl:Class CHEBI:138384 biolink:NamedThing 7-oxotaurolithocholic acid monarch-merged.owl owl:Class CHEBI:138389 biolink:NamedThing 7,12-dioxolithocholic acid monarch-merged.owl owl:Class CHEBI:138391 biolink:NamedThing 7-oxoglycolithocholic acid monarch-merged.owl owl:Class CHEBI:138393 biolink:NamedThing 7-oxotaurodeoxycholic acid monarch-merged.owl owl:Class CHEBI:138394 biolink:NamedThing 7-oxoglycodeoxycholic acid monarch-merged.owl owl:Class CHEBI:16390 biolink:NamedThing 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanic acid monarch-merged.owl owl:Class CHEBI:31459 biolink:NamedThing 3,7,12-trioxo-5beta-cholanic acid monarch-merged.owl owl:Class CHEBI:64294 biolink:NamedThing 7-ketocholesterol monarch-merged.owl owl:Class CHEBI:87653 biolink:NamedThing (25R)-3beta,26-dihydroxycholest-5-en-7-one monarch-merged.owl owl:Class CHEBI:87677 biolink:NamedThing (25R)-3beta-hydroxycholest-5-en-7-one-26-al monarch-merged.owl owl:Class CHEBI:119 biolink:NamedThing D-synephrine monarch-merged.owl owl:Class CHEBI:11909 biolink:NamedThing 3beta-hydroxy-5alpha-pregnan-20-one monarch-merged.owl owl:Class CHEBI:50170 biolink:NamedThing 3-hydroxy-5alpha-pregnan-20-one monarch-merged.owl owl:Class CHEBI:50169 biolink:NamedThing brexanolone monarch-merged.owl owl:Class CHEBI:11935 biolink:NamedThing 4-(beta-D-glucosyloxy)benzoate monarch-merged.owl owl:Class CHEBI:13719 biolink:NamedThing acetylsalicylate A benzoate that is the conjugate base of acetylsalicylic acid, arising from deprotonation of the carboxy group. monarch-merged.owl acetylsalicylate|2-(acetyloxy)benzoate owl:Class CHEBI:16150 biolink:NamedThing benzoate The simplest member of the class of benzoates that is the conjugate base of benzoic acid, comprising a benzoic acid core with a proton missing to give a charge of -1. monarch-merged.owl Phenylcarboxylate|benzoic acid, ion(1-)|Benzenemethanoate|Phenylformate|benzoate anion|Benzenecarboxylate|Benzeneformate|benzoate owl:Class CHEBI:17331 biolink:NamedThing N-benzoylanthranilate monarch-merged.owl owl:Class CHEBI:19950 biolink:NamedThing 3-O-methylgallate monarch-merged.owl owl:Class CHEBI:22494 biolink:NamedThing aminobenzoate monarch-merged.owl aminobenzoates chebi_ontology owl:Class CHEBI:23133 biolink:NamedThing chlorobenzoate monarch-merged.owl owl:Class CHEBI:23410 biolink:NamedThing cumate monarch-merged.owl owl:Class CHEBI:25236 biolink:NamedThing methoxybenzoate monarch-merged.owl owl:Class CHEBI:27021 biolink:NamedThing toluate monarch-merged.owl owl:Class CHEBI:36086 biolink:NamedThing sulfonatobenzoate monarch-merged.owl owl:Class CHEBI:38036 biolink:NamedThing sulfobenzoate monarch-merged.owl owl:Class CHEBI:58071 biolink:NamedThing mono(2-ethylhexyl) phthalate(1-) monarch-merged.owl owl:Class CHEBI:58203 biolink:NamedThing 2-formylbenzoate monarch-merged.owl owl:Class CHEBI:61666 biolink:NamedThing amidobenzoate monarch-merged.owl owl:Class CHEBI:64270 biolink:NamedThing cyclic dehypoxanthinylfutalosinate(1-) monarch-merged.owl owl:Class CHEBI:65295 biolink:NamedThing N-alkylphthalic monoamide(1-) monarch-merged.owl owl:Class CHEBI:70856 biolink:NamedThing 2-halobenzoate monarch-merged.owl owl:Class CHEBI:71579 biolink:NamedThing methyl red(1-) monarch-merged.owl owl:Class CHEBI:78396 biolink:NamedThing 4-hydroxy-3-polyprenylbenzoate monarch-merged.owl owl:Class CHEBI:11944 biolink:NamedThing 4-(hydroxymethyl)benzenesulfonate monarch-merged.owl owl:Class CHEBI:22713 biolink:NamedThing arenesulfonate oxoanion monarch-merged.owl owl:Class CHEBI:11987 biolink:NamedThing 4-formylbenzenesulfonate monarch-merged.owl owl:Class CHEBI:22493 biolink:NamedThing aminobenzenesulfonate monarch-merged.owl owl:Class CHEBI:25478 biolink:NamedThing naphthalenesulfonate monarch-merged.owl owl:Class CHEBI:27023 biolink:NamedThing toluene-4-sulfonate monarch-merged.owl owl:Class CHEBI:33564 biolink:NamedThing dihydroxybenzenesulfonate monarch-merged.owl owl:Class CHEBI:53348 biolink:NamedThing benzenesulfonates monarch-merged.owl owl:Class CHEBI:63950 biolink:NamedThing 2,2'-disulfonatoazobenzene monarch-merged.owl owl:Class CHEBI:63955 biolink:NamedThing 2-amino-6-chloro-4-(3-sulfonatoanilino)-1,3,5-triazine monarch-merged.owl owl:Class CHEBI:11946 biolink:NamedThing 4-(trimethylammonio)but-2-enoate monarch-merged.owl owl:Class CHEBI:22860 biolink:NamedThing amino-acid betaine Any amino acid-derived zwitterion - such as glycine betaine (N,N,N-trimethylammonioacetate) - in which the ammonium nitrogen carries methyl substituents and bears no hydrogen atoms. monarch-merged.owl amino-acid betaines|betaines|amino acid betaines chebi_ontology owl:Class CHEBI:134398 biolink:NamedThing D-proline betaine monarch-merged.owl owl:Class CHEBI:136834 biolink:NamedThing 2-sulfenohercynine monarch-merged.owl owl:Class CHEBI:138481 biolink:NamedThing N(5),N(5),N(5)-trimethyl-N(2)-[(3R)-3-(acyloxy)acyl]-L-ornithine betaine monarch-merged.owl owl:Class CHEBI:15781 biolink:NamedThing N(alpha),N(alpha),N(alpha)-trimethyl-L-histidine monarch-merged.owl owl:Class CHEBI:16244 biolink:NamedThing 4-(trimethylammonio)butanoate monarch-merged.owl owl:Class CHEBI:17750 biolink:NamedThing glycine betaine monarch-merged.owl owl:Class CHEBI:35280 biolink:NamedThing L-proline betaine monarch-merged.owl owl:Class CHEBI:4828 biolink:NamedThing ergothioneine monarch-merged.owl owl:Class CHEBI:79071 biolink:NamedThing selenoneine monarch-merged.owl owl:Class CHEBI:82707 biolink:NamedThing ergothioneine thione form monarch-merged.owl owl:Class CHEBI:11972 biolink:NamedThing 4-carboxymethylenebut-2-en-4-olide monarch-merged.owl owl:Class CHEBI:50523 biolink:NamedThing butenolide A gamma-lactone that consists of a 2-furanone skeleton and its substituted derivatives. monarch-merged.owl furan-2-one|2-furanone|butenolides 0 C4H4O2 84.074 84.02113 Wikipedia:Butenolide CHEBI:38121|CHEBI:22960 chebi_ontology owl:Class CHEBI:155902 biolink:NamedThing 4-hydroxy-5-(4-hydroxybenzylidene)-3-(4-hydroxyphenyl)furan-2(5H)-one monarch-merged.owl owl:Class CHEBI:176783 biolink:NamedThing vitamin C Any member of a group of vitamers that belong to the chemical structural class called butenolides that exhibit biological activity against vitamin C deficiency in animals. The vitamers include L-ascorbic acid and its salt, ionized and oxidized forms. monarch-merged.owl vitamin C vitamer|vitaminum C|vitamin C vitamers|vitamine C|vitamina C|Vitamin C PMID:34064549|PMID:21885436|Wikipedia:Vitamin_C|PMCID:PMC8088531|PMID:33916257 CHEBI:21241 chebi_ontology owl:Class CHEBI:20479 biolink:NamedThing (5-oxo-2-sulfonato-2,5-dihydrofuran-2-yl)acetate monarch-merged.owl owl:Class CHEBI:22669 biolink:NamedThing aspulvinone monarch-merged.owl owl:Class CHEBI:23730 biolink:NamedThing 5-oxo-2-furylacetic acid monarch-merged.owl owl:Class CHEBI:38118 biolink:NamedThing but-2-en-4-olide monarch-merged.owl owl:Class CHEBI:38120 biolink:NamedThing but-3-en-4-olide monarch-merged.owl owl:Class CHEBI:38122 biolink:NamedThing 2-chloro-4-carboxymethylenebut-2-en-1,4-olide monarch-merged.owl owl:Class CHEBI:64974 biolink:NamedThing (-)-microperfuranone monarch-merged.owl owl:Class CHEBI:68487 biolink:NamedThing strigolactone monarch-merged.owl owl:Class CHEBI:74634 biolink:NamedThing cardenolides Any steroid lactone that is a C23 steroid with a five-membered lactone ring at C-17 and its substituted derivatives. They form the aglycone constituents of cardiac glycosides. monarch-merged.owl chebi_ontology owl:Class CHEBI:11986 biolink:NamedThing 4-fluoro-L-threonine monarch-merged.owl owl:Class CHEBI:24068 biolink:NamedThing fluoroamino acid monarch-merged.owl owl:Class CHEBI:83822 biolink:NamedThing non-proteinogenic L-alpha-amino acid Any L-alpha-amino acid which is not a member of the group of 23 proteinogenic amino acids. monarch-merged.owl non-proteinogenic L-alpha-amino acids chebi_ontology owl:Class CHEBI:134405 biolink:NamedThing S-anthraniloyl-L-cysteine monarch-merged.owl owl:Class CHEBI:136997 biolink:NamedThing L-polyhomomethionine monarch-merged.owl owl:Class CHEBI:144833 biolink:NamedThing L-beta-ethynylserine monarch-merged.owl owl:Class CHEBI:149778 biolink:NamedThing methyl-L-glutamic acid monarch-merged.owl owl:Class CHEBI:15682 biolink:NamedThing (N(omega)-L-arginino)succinic acid monarch-merged.owl owl:Class CHEBI:15729 biolink:NamedThing L-ornithine monarch-merged.owl owl:Class CHEBI:15765 biolink:NamedThing L-dopa An optically active form of dopa having L-configuration. Used to treat the stiffness, tremors, spasms, and poor muscle control of Parkinson's disease monarch-merged.owl L-DOPA|Dihydroxy-L-phenylalanine|levodopa|3,4-Dihydroxy-L-phenylalanine|Dopar|beta-(3,4-dihydroxyphenyl)alanine|3-Hydroxy-L-tyrosine|L-dopa|(2S)-2-amino-3-(3,4-dihydroxyphenyl)propanoic acid|beta-(3,4-dihydroxyphenyl)-L-alanine|3,4-DIHYDROXYPHENYLALANINE|L-beta-(3,4-Dihydroxyphenyl)alanine|levodopum|(-)-3-(3,4-dihydroxyphenyl)-L-alanine|(-)-dopa|L-Dopa owl:Class CHEBI:15768 biolink:NamedThing 3,5-diiodo-L-tyrosine monarch-merged.owl owl:Class CHEBI:15829 biolink:NamedThing L-serine O-sulfate monarch-merged.owl owl:Class CHEBI:15836 biolink:NamedThing 4-phospho-L-aspartic acid monarch-merged.owl owl:Class CHEBI:15851 biolink:NamedThing 3-(uracil-1-yl)-L-alanine monarch-merged.owl owl:Class CHEBI:15955 biolink:NamedThing discadenine monarch-merged.owl owl:Class CHEBI:15970 biolink:NamedThing O-carbamoyl-L-serine monarch-merged.owl owl:Class CHEBI:16163 biolink:NamedThing S-carboxymethyl-L-cysteine monarch-merged.owl owl:Class CHEBI:16283 biolink:NamedThing L-cystine monarch-merged.owl owl:Class CHEBI:16303 biolink:NamedThing 3-amino-L-alanine monarch-merged.owl owl:Class CHEBI:16357 biolink:NamedThing 3-(pyrazol-1-yl)-L-alanine monarch-merged.owl owl:Class CHEBI:16747 biolink:NamedThing 4-methylene-L-glutamine monarch-merged.owl owl:Class CHEBI:16752 biolink:NamedThing erythro-5-phosphonooxy-L-lysine monarch-merged.owl owl:Class CHEBI:16821 biolink:NamedThing 4-oxo-L-proline monarch-merged.owl owl:Class CHEBI:16934 biolink:NamedThing 3-cyano-L-alanine monarch-merged.owl owl:Class CHEBI:16946 biolink:NamedThing L-kynurenine monarch-merged.owl owl:Class CHEBI:16981 biolink:NamedThing O-(3-O-D-galactosyl-N-acetyl-beta-D-galactosaminyl)-L-serine monarch-merged.owl owl:Class CHEBI:17144 biolink:NamedThing 2-(3-amino-3-carboxypropyl)-L-histidine monarch-merged.owl owl:Class CHEBI:17285 biolink:NamedThing L-cysteic acid monarch-merged.owl owl:Class CHEBI:17328 biolink:NamedThing N(6)-[(indol-3-yl)acetyl]-L-lysine monarch-merged.owl owl:Class CHEBI:17604 biolink:NamedThing N(6)-methyl-L-lysine monarch-merged.owl owl:Class CHEBI:17619 biolink:NamedThing 4-(3-methylbut-2-enyl)-L-tryptophan monarch-merged.owl owl:Class CHEBI:17780 biolink:NamedThing 5-hydroxy-L-tryptophan monarch-merged.owl owl:Class CHEBI:17917 biolink:NamedThing L-allysine monarch-merged.owl owl:Class CHEBI:17929 biolink:NamedThing N(omega),N(omega)-dimethyl-L-arginine monarch-merged.owl owl:Class CHEBI:18183 biolink:NamedThing 5-oxo-L-proline An optically active form of 5-oxoproline having L-configuration. monarch-merged.owl (S)-(-)-2-pyrrolidone-5-carboxylic acid|5-Pyrrolidone-2-carboxylic acid|Pyroglutamate|pidolic acid|PYROGLUTAMIC ACID|(-)-2-pyrrolidone-5-carboxylic acid|L-5-Pyrrolidone-2-carboxylic acid|L-Pyroglutamic acid|(2S)-5-oxopyrrolidine-2-carboxylic acid|5-Oxo-L-proline|(S)-pyroglutamic acid|5-oxo-L-proline|Pyroglutamic acid 0 C5H7NO3 InChI=1S/C5H7NO3/c7-4-2-1-3(6-4)5(8)9/h3H,1-2H2,(H,6,7)(H,8,9)/t3-/m0/s1 ODHCTXKNWHHXJC-VKHMYHEASA-N 129.11400 129.04259 OC(=O)[C@@H]1CCC(=O)N1 PMID:17439666|Wikipedia:Pyroglutamic_acid|PDBeChem:PCA|MetaCyc:5-OXOPROLINE|CAS:98-79-3|DrugBank:DB03088|Gmelin:1125330|HMDB:HMDB0000267|KNApSAcK:C00007403|Reaxys:82132|PMID:22619187|Beilstein:82132|KEGG:C01879|PMID:22560249|Beilstein:5251861|YMDB:YMDB00107 CHEBI:44704|CHEBI:12153|CHEBI:20619|CHEBI:2113 chebi_ontology owl:Class CHEBI:18240 biolink:NamedThing 4-hydroxy-L-proline The L-stereoisomer of 4-hydroxyproline. monarch-merged.owl (2S)-4-hydroxypyrrolidine-2-carboxylic acid|4-hydroxy-L-proline|4-Hydroxy-L-proline|cis-4-Hydroxy-L-Proline|L-Hydroxyproline|hydroxy-L-proline 0 C5H9NO3 InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3?,4-/m0/s1 PMMYEEVYMWASQN-BKLSDQPFSA-N 131.12990 131.05824 OC1CN[C@@H](C1)C(O)=O Reaxys:81441|KEGG:C01015|CAS:51-35-4|KNApSAcK:C00001370|HMDB:HMDB0006055|Wikipedia:4-hydroxy-L-proline CHEBI:1852|CHEBI:11999 chebi_ontology owl:Class CHEBI:18332 biolink:NamedThing L-thyroxine monarch-merged.owl owl:Class CHEBI:18347 biolink:NamedThing L-norleucine monarch-merged.owl owl:Class CHEBI:18412 biolink:NamedThing N(omega)-phospho-L-arginine monarch-merged.owl owl:Class CHEBI:20056 biolink:NamedThing 3-hydroxy-L-proline monarch-merged.owl owl:Class CHEBI:20391 biolink:NamedThing 4-hydroxy-L-lysine monarch-merged.owl owl:Class CHEBI:21363 biolink:NamedThing L-methionine sulfone monarch-merged.owl owl:Class CHEBI:21752 biolink:NamedThing N-methyl-L-alpha-amino acid monarch-merged.owl owl:Class CHEBI:21836 biolink:NamedThing N(4)-glycosyl-L-asparagine monarch-merged.owl owl:Class CHEBI:21858 biolink:NamedThing hypusine monarch-merged.owl owl:Class CHEBI:22043 biolink:NamedThing S-farnesyl-L-cysteine monarch-merged.owl owl:Class CHEBI:27812 biolink:NamedThing Se-methyl-L-selenocysteine monarch-merged.owl owl:Class CHEBI:27847 biolink:NamedThing 3-iodo-L-tyrosine monarch-merged.owl owl:Class CHEBI:28030 biolink:NamedThing L-2-amino-4-(hydroxymethylphosphinoyl)butanoic acid monarch-merged.owl owl:Class CHEBI:28133 biolink:NamedThing S-alkyl-L-cysteine S-oxide monarch-merged.owl owl:Class CHEBI:28229 biolink:NamedThing N(omega)-methyl-L-arginine monarch-merged.owl owl:Class CHEBI:28330 biolink:NamedThing 4-hydroxy-L-threonine monarch-merged.owl owl:Class CHEBI:28397 biolink:NamedThing cis-4-hydroxy-L-proline monarch-merged.owl owl:Class CHEBI:28490 biolink:NamedThing L-methionine sulfoximine monarch-merged.owl owl:Class CHEBI:28538 biolink:NamedThing N(omega)-hydroxy-L-arginine monarch-merged.owl owl:Class CHEBI:29063 biolink:NamedThing L-mimosine monarch-merged.owl owl:Class CHEBI:30249 biolink:NamedThing N-formyl-L-kynurenine monarch-merged.owl owl:Class CHEBI:30653 biolink:NamedThing homoserine An alpha-amino acid that is glycine substituted at the alpha-position by a 2-hydroxyethyl group. monarch-merged.owl 2-amino-4-hydroxybutanoic acid|homoserine|DL-Homoserine|Hse 0 C4H9NO3 InChI=1S/C4H9NO3/c5-3(1-2-6)4(7)8/h3,6H,1-2,5H2,(H,7,8) UKAUYVFTDYCKQA-UHFFFAOYSA-N 119.11920 119.05824 NC(CCO)C(O)=O CAS:1927-25-9|PMID:15753300|PMID:17439666|Reaxys:1721682|Beilstein:1721682|CAS:498-19-1 chebi_ontology owl:Class CHEBI:35619 biolink:NamedThing L-alpha-aminobutyric acid monarch-merged.owl owl:Class CHEBI:36408 biolink:NamedThing 5-hydroxy-L-kynurenine monarch-merged.owl owl:Class CHEBI:37012 biolink:NamedThing L-3-oxoalanine monarch-merged.owl owl:Class CHEBI:37525 biolink:NamedThing O-phospho-L-threonine monarch-merged.owl owl:Class CHEBI:37556 biolink:NamedThing O-(alpha-D-mannosyl)-L-serine monarch-merged.owl owl:Class CHEBI:37788 biolink:NamedThing O(4)-phospho-L-tyrosine monarch-merged.owl owl:Class CHEBI:40673 biolink:NamedThing L-2-amino-3-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:41450 biolink:NamedThing gamma-carboxy-L-glutamic acid monarch-merged.owl owl:Class CHEBI:41630 biolink:NamedThing S-oxy-L-cysteine monarch-merged.owl owl:Class CHEBI:41701 biolink:NamedThing (2S)-amino[(4R)-2-iminohexahydropyrimidin-4-yl]acetic acid monarch-merged.owl owl:Class CHEBI:41710 biolink:NamedThing S-hydroxy-L-cysteine monarch-merged.owl owl:Class CHEBI:43433 biolink:NamedThing L-alloisoleucine monarch-merged.owl owl:Class CHEBI:43797 biolink:NamedThing L-propargylglycine monarch-merged.owl owl:Class CHEBI:43858 biolink:NamedThing L-vinylglycine monarch-merged.owl owl:Class CHEBI:43997 biolink:NamedThing N(6),N(6)-dimethyl-L-lysine monarch-merged.owl owl:Class CHEBI:47356 biolink:NamedThing 7-chloro-L-tryptophan monarch-merged.owl owl:Class CHEBI:47913 biolink:NamedThing S-hydrocarbyl-L-cysteine monarch-merged.owl owl:Class CHEBI:47980 biolink:NamedThing threo-3-methyl-L-aspartic acid monarch-merged.owl owl:Class CHEBI:48005 biolink:NamedThing gamma-L-glutamylputrescine monarch-merged.owl owl:Class CHEBI:48031 biolink:NamedThing 4-methylene-L-glutamic acid monarch-merged.owl owl:Class CHEBI:497734 biolink:NamedThing L-thialysine monarch-merged.owl owl:Class CHEBI:50038 biolink:NamedThing deoxyhypusine monarch-merged.owl owl:Class CHEBI:50599 biolink:NamedThing N(tele)-methyl-L-histidine monarch-merged.owl owl:Class CHEBI:50789 biolink:NamedThing (3S)-3-hydroxy-L-asparagine monarch-merged.owl owl:Class CHEBI:52794 biolink:NamedThing beta-L-aspartylhydroxamic acid monarch-merged.owl owl:Class CHEBI:53608 biolink:NamedThing O-(N-acetyl-alpha-D-galactosaminyl)-L-serine monarch-merged.owl owl:Class CHEBI:53609 biolink:NamedThing O-(N-acetyl-alpha-D-galactosaminyl)-L-threonine monarch-merged.owl owl:Class CHEBI:59356 biolink:NamedThing 7-(3-methylbut-2-enyl)-L-tryptophan monarch-merged.owl owl:Class CHEBI:609827 biolink:NamedThing L-canavanine monarch-merged.owl owl:Class CHEBI:61425 biolink:NamedThing psicosyllysine monarch-merged.owl owl:Class CHEBI:61437 biolink:NamedThing fructoselysine 6-phosphate monarch-merged.owl owl:Class CHEBI:61521 biolink:NamedThing gamma-glutamyl-gamma-aminobutyraldehyde monarch-merged.owl owl:Class CHEBI:61702 biolink:NamedThing dinoflagellate luciferin monarch-merged.owl owl:Class CHEBI:61707 biolink:NamedThing oxidized dinoflagellate luciferin monarch-merged.owl owl:Class CHEBI:62013 biolink:NamedThing glycerol 1-phosphoserine monarch-merged.owl owl:Class CHEBI:62464 biolink:NamedThing O-(3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl)-L-serine monarch-merged.owl owl:Class CHEBI:64328 biolink:NamedThing lysidine monarch-merged.owl owl:Class CHEBI:64896 biolink:NamedThing O-(pantetheine-4'-phosphoryl)serine monarch-merged.owl owl:Class CHEBI:64938 biolink:NamedThing N(pros)-phospho-L-histidine monarch-merged.owl owl:Class CHEBI:6572 biolink:NamedThing L-lupinic acid monarch-merged.owl owl:Class CHEBI:67204 biolink:NamedThing carboxynorspermidine monarch-merged.owl owl:Class CHEBI:73621 biolink:NamedThing 3-methylthioaspartic acid monarch-merged.owl owl:Class CHEBI:73764 biolink:NamedThing 2-[3-carboxy-3-(dimethylamino)propyl]-L-histidine monarch-merged.owl owl:Class CHEBI:73969 biolink:NamedThing L-enduracididine monarch-merged.owl owl:Class CHEBI:73971 biolink:NamedThing (3S)-3-hydroxy-L-enduracididine monarch-merged.owl owl:Class CHEBI:74347 biolink:NamedThing FMN-L-threonine monarch-merged.owl owl:Class CHEBI:74653 biolink:NamedThing 3-thio-L-aspartic acid monarch-merged.owl owl:Class CHEBI:74819 biolink:NamedThing 2-methyl-L-serine monarch-merged.owl owl:Class CHEBI:75851 biolink:NamedThing (2S,3R)-capreomycidine monarch-merged.owl owl:Class CHEBI:75894 biolink:NamedThing 4-O-(beta-L-Araf-(1->2)-beta-L-Araf-(1->2)-beta-L-Araf)-cis-L-Hyp monarch-merged.owl owl:Class CHEBI:75933 biolink:NamedThing 4-O-(beta-L-Araf)-cis-L-Hyp monarch-merged.owl owl:Class CHEBI:76242 biolink:NamedThing O-(S-acylpantetheine-4'-phosphoryl)serine monarch-merged.owl owl:Class CHEBI:77029 biolink:NamedThing 3-(5-oxoisoxazolin-2-yl)-L-alanine monarch-merged.owl owl:Class CHEBI:77030 biolink:NamedThing 3-(5-oxoisoxazolin-4-yl)-L-alanine monarch-merged.owl owl:Class CHEBI:77031 biolink:NamedThing (2S,3S)-beta-methylphenylalanine monarch-merged.owl owl:Class CHEBI:77482 biolink:NamedThing (3S)-3-hydroxy-L-lysine monarch-merged.owl owl:Class CHEBI:79076 biolink:NamedThing 3-methyl-L-tyrosine monarch-merged.owl owl:Class CHEBI:79079 biolink:NamedThing (4S)-4-hydroxy-L-isoleucine monarch-merged.owl owl:Class CHEBI:83418 biolink:NamedThing S-(5-histidyl)cysteine sulfoxide monarch-merged.owl owl:Class CHEBI:83661 biolink:NamedThing lysidine monophosphate monarch-merged.owl owl:Class CHEBI:85346 biolink:NamedThing N(3)-fumaroyl-(S)-2,3-diaminopropanoic acid monarch-merged.owl owl:Class CHEBI:88159 biolink:NamedThing 3-hydroxy-O,5-dimethyl-L-tyrosine monarch-merged.owl owl:Class CHEBI:90837 biolink:NamedThing 3-O-(N-acetyl-beta-D-glucosaminyl)-L-serine monarch-merged.owl owl:Class CHEBI:90839 biolink:NamedThing 3-O-(N-acetyl-beta-D-glucosaminyl)-L-threonine monarch-merged.owl owl:Class CHEBI:84189 biolink:NamedThing L-threonine derivative monarch-merged.owl owl:Class CHEBI:18336 biolink:NamedThing 4-(phosphonooxy)-L-threonine monarch-merged.owl owl:Class CHEBI:21958 biolink:NamedThing O-glycosyl-L-threonine monarch-merged.owl owl:Class CHEBI:28890 biolink:NamedThing coenzyme B monarch-merged.owl owl:Class CHEBI:45826 biolink:NamedThing N-acetyl-L-threonine monarch-merged.owl owl:Class CHEBI:12040 biolink:NamedThing 4-oxohex-2-enedioate monarch-merged.owl owl:Class CHEBI:16810 biolink:NamedThing 2-oxoglutarate(2-) An oxo dicarboxylate obtained by deprotonation of both carboxy groups of 2-oxoglutaric acid. monarch-merged.owl alpha-ketoglutarate|2-oxopentanedioate|2-oxopentanedioic acid, ion(2-)|2-oxoglutarate|2-ketoglutarate -2 C5H4O5 InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)/p-2 KPGXRSRHYNQIFN-UHFFFAOYSA-L 144.08226 144.00697 [O-]C(=O)CCC(=O)C([O-])=O Gmelin:602479|CAS:64-15-3|Reaxys:3664503|PMID:17190852|MetaCyc:2-KETOGLUTARATE|PMID:21196226|PMID:21791173|PMID:19376872|PMID:15612731|PMID:11913971|PMID:21184277|Beilstein:3664503|KEGG:C00026 CHEBI:11638|CHEBI:19748 chebi_ontology owl:Class CHEBI:16967 biolink:NamedThing (Z)-5-oxohex-2-enedioate monarch-merged.owl owl:Class CHEBI:17082 biolink:NamedThing L-2-aminoadipate(2-) monarch-merged.owl owl:Class CHEBI:17105 biolink:NamedThing 4-maleylacetoacetate monarch-merged.owl owl:Class CHEBI:17121 biolink:NamedThing oxomalonate(2-) monarch-merged.owl owl:Class CHEBI:17742 biolink:NamedThing 4-hydroxy-2-oxoglutarate(2-) monarch-merged.owl owl:Class CHEBI:19615 biolink:NamedThing 2-hydroxy-6-oxonona-2,4-dienedioate monarch-merged.owl owl:Class CHEBI:29044 biolink:NamedThing 2-amino-3-(3-oxoprop-1-enyl)but-2-enedioate monarch-merged.owl owl:Class CHEBI:47941 biolink:NamedThing 4,6-dioxohept-2-enedioate monarch-merged.owl owl:Class CHEBI:64928 biolink:NamedThing 2-oxohex-3-enedioate monarch-merged.owl owl:Class CHEBI:72701 biolink:NamedThing 2-oxopimelate(2-) monarch-merged.owl owl:Class CHEBI:12060 biolink:NamedThing 5'-deoxy-5'-fluoroadenosine monarch-merged.owl owl:Class CHEBI:22260 biolink:NamedThing adenosines Any purine ribonucleoside that is a derivative of adenosine. monarch-merged.owl chebi_ontology owl:Class CHEBI:15625 biolink:NamedThing S-adenosylmethioninamine monarch-merged.owl owl:Class CHEBI:16335 biolink:NamedThing adenosine A ribonucleoside composed of a molecule of adenine attached to a ribofuranose moiety via a beta-N(9)-glycosidic bond. monarch-merged.owl beta-D-Adenosine|Adenyldeoxyriboside|9-beta-D-ribofuranosyl-9H-purin-6-amine|ADENOSINE|Deoxyadenosine|Desoxyadenosine|Adenocor|adenosine|Adenosine|Adenosin|9-beta-D-Ribofuranosidoadenine|9-beta-D-Ribofuranosyl-9H-purin-6-amine|Adenocard|Ado|Adenine Deoxyribonucleoside|(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol|6-Amino-9-beta-D-ribofuranosyl-9H-purine|Adenoscan|Ade-Rib 0 C10H13N5O4 InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1 OIRDTQYFTABQOQ-KQYNXXCUSA-N 267.24152 267.09675 Nc1ncnc2n(cnc12)[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O ECMDB:ECMDB00050|DrugBank:DB00640|MetaCyc:ADENOSINE|PMID:18000974|HMDB:HMDB0000050|PDBeChem:ADN|YMDB:YMDB00058|PMID:11978011|KEGG:C00212|PMID:323854|PMID:16183671|PMID:11213237|LINCS:LSM-28568|Gmelin:53385|Reaxys:93029|CAS:58-61-7|Drug_Central:90|Beilstein:93029|KEGG:D00045|PMID:17190852|PMID:11820865|KNApSAcK:C00007444|PMID:16917093|Wikipedia:Adenosine CHEBI:13734|CHEBI:40825|CHEBI:40558|CHEBI:2472|CHEBI:40906|CHEBI:22237 chebi_ontology owl:Class CHEBI:16680 biolink:NamedThing S-adenosyl-L-homocysteine An organic sulfide that is the S-adenosyl derivative of L-homocysteine. monarch-merged.owl S-ADENOSYL-L-HOMOCYSTEINE|adenosylhomocysteine|S-Adenosylhomocysteine|S-(5'-adenosyl)-L-homocysteine|AdoHcy|S-(5'-deoxyadenosin-5'-yl)-L-homocysteine|SAH|2-S-adenosyl-L-homocysteine|(2S)-2-amino-4-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}sulfanyl)butanoic acid|S-[1-(adenin-9-yl)-1,5-dideoxy-beta-D-ribofuranos-5-yl]-L-homocysteine|Adenosyl-L-homocysteine|S-Adenosyl-L-homocysteine 0 C14H20N6O5S InChI=1S/C14H20N6O5S/c15-6(14(23)24)1-2-26-3-7-9(21)10(22)13(25-7)20-5-19-8-11(16)17-4-18-12(8)20/h4-7,9-10,13,21-22H,1-3,15H2,(H,23,24)(H2,16,17,18)/t6-,7+,9+,10+,13+/m0/s1 ZJUKTBDSGOFHSH-WFMPWKQPSA-N 384.41204 384.12159 N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12)C(O)=O PMID:15542683|PMID:17300772|Beilstein:99188|HMDB:HMDB0000939|PMID:21837278|PMID:11700066|PMID:17439666|PMID:16197315|PMID:15026045|PMID:16423634|PMID:16253211|PMID:17044778|PMID:16109423|MetaCyc:ADENOSYL-HOMO-CYS|PMID:11746687|PMID:16519522|PMID:24145794|Reaxys:99188|KNApSAcK:C00007230|Wikipedia:S-Adenosyl-L-homocysteine|PMID:17726531|PMID:11997462|PMID:11961214|KEGG:C00021|DrugBank:DB01752|PMID:12767735|PMID:18976670|PMID:19357721|PMID:22455498|PMID:22225784|PMID:17172447|Gmelin:692100|PMID:19249293|CAS:979-92-0|PMID:16197293|PMID:15057524|PMID:15645450|PDBeChem:SAH CHEBI:12741|CHEBI:45495|CHEBI:12761|CHEBI:8945|CHEBI:12759|CHEBI:22034 chebi_ontology owl:Class CHEBI:17319 biolink:NamedThing 5'-deoxyadenosine monarch-merged.owl owl:Class CHEBI:1958 biolink:NamedThing 5'-dehydroadenosine monarch-merged.owl owl:Class CHEBI:2479 biolink:NamedThing adenosylcobinamide guanosyl diphosphate monarch-merged.owl owl:Class CHEBI:2481 biolink:NamedThing adenosylcobinamide phosphate monarch-merged.owl owl:Class CHEBI:24909 biolink:NamedThing hydrocarbyladenosine monarch-merged.owl owl:Class CHEBI:26404 biolink:NamedThing puromycins monarch-merged.owl owl:Class CHEBI:26953 biolink:NamedThing thioadenosine monarch-merged.owl owl:Class CHEBI:29014 biolink:NamedThing cordycepin monarch-merged.owl owl:Class CHEBI:47133 biolink:NamedThing 5'-chloro-5'-deoxyadenosine monarch-merged.owl owl:Class CHEBI:64260 biolink:NamedThing aminodeoxyfutalosine monarch-merged.owl owl:Class CHEBI:37143 biolink:NamedThing organofluorine compound An organofluorine compound is a compound containing at least one carbon-fluorine bond. monarch-merged.owl organofluorine compound|organofluorine compounds|fluoroorganic compounds|fluororganische Verbindungen|fluoroorganic compound|fluoroorganics 0 FR 18.998 18.99840 *F MetaCyc:Fluorides chebi_ontology owl:Class CHEBI:14272 biolink:NamedThing fluoroacetaldehyde monarch-merged.owl owl:Class CHEBI:175901 biolink:NamedThing gemcitabine monarch-merged.owl owl:Class CHEBI:24067 biolink:NamedThing fluoroalkane A haloalkane that is an alkane in which at least one hydrogen atom has been replaced by a fluorine atom. monarch-merged.owl fluoroalkanes|fluoroalkane chebi_ontology owl:Class CHEBI:30775 biolink:NamedThing fluoroacetic acid monarch-merged.owl owl:Class CHEBI:35496 biolink:NamedThing fluorobenzenes monarch-merged.owl owl:Class CHEBI:38679 biolink:NamedThing fluorobiphenyl monarch-merged.owl owl:Class CHEBI:38824 biolink:NamedThing fluorocarbon Compounds consisting wholly of fluorine and carbon. monarch-merged.owl fluorocarbon|fluorocarbons chebi_ontology owl:Class CHEBI:46345 biolink:NamedThing 5-fluorouracil A nucleobase analogue that is uracil in which the hydrogen at position 5 is replaced by fluorine. It is an antineoplastic agent which acts as an antimetabolite - following conversion to the active deoxynucleotide, it inhibits DNA synthesis (by blocking the conversion of deoxyuridylic acid to thymidylic acid by the cellular enzyme thymidylate synthetase) and so slows tumour growth. monarch-merged.owl 5-FU|5-Fluoracil|fluorouracilo|fluorouracilum|5-fluoropyrimidine-2,4(1H,3H)-dione|fluorouracil|5-Fluoropyrimidine-2,4-dione|5-Fluorouracil|5-fluorouracil|Fluorouracil 0 C4H3FN2O2 InChI=1S/C4H3FN2O2/c5-2-1-6-4(9)7-3(2)8/h1H,(H2,6,7,8,9) GHASVSINZRGABV-UHFFFAOYSA-N 130.07730 130.01786 Fc1c[nH]c(=O)[nH]c1=O PMID:19023200|Drug_Central:26|CAS:51-21-8|PMID:12520460|KEGG:D00584|Beilstein:127172|Reaxys:127172|PDBeChem:URF|LINCS:LSM-4261|HMDB:HMDB0014684|KEGG:C07649|Wikipedia:Fluorouracil|PMID:11356943|DrugBank:DB00544|PMID:14769231 CHEBI:46343|CHEBI:2054 chebi_ontology owl:Class CHEBI:46695 biolink:NamedThing fluorohydrocarbon A compound derived from a hydrocarbon by replacing one or more hydrogen atoms with fluorine atoms. monarch-merged.owl Fluorkohlenwasserstoffe|FKW|fluorohydrocarbons|HFC chebi_ontology owl:Class CHEBI:50830 biolink:NamedThing fluorinated steroid monarch-merged.owl owl:Class CHEBI:6015 biolink:NamedThing isoflurane monarch-merged.owl isofluranum|isoflurano|2-chloro-2-difluoromethoxy-1,1,1-trifluoroethane|Ethane|Forene|Aerrane|Isoflurane|Forane|1-chloro-2,2,2-trifluoroethyl difluoromethyl ether|isoflurane 0 C3H2ClF5O InChI=1S/C3H2ClF5O/c4-1(3(7,8)9)10-2(5)6/h1-2H PIWKPBJCKXDKJR-UHFFFAOYSA-N 184.49210 183.97143 FC(F)OC(Cl)C(F)(F)F Wikipedia:Isoflurane|KEGG:C07518|KEGG:D00545|DrugBank:DB00753|CAS:26675-46-7|VSDB:1804|Drug_Central:1493 chebi_ontology owl:Class CHEBI:60761 biolink:NamedThing floxuridine monarch-merged.owl owl:Class CHEBI:83565 biolink:NamedThing (trifluoromethyl)benzenes An organofluorine compound that is (trifluoromethyl)benzene and derivatives arising from substitution of one or more of the phenyl hydrogens. monarch-merged.owl chebi_ontology owl:Class CHEBI:8871 biolink:NamedThing risperidone monarch-merged.owl owl:Class CHEBI:67016 biolink:NamedThing tetrahydrofolate A folate obtained by deprotonation of any tetrahydrofolic acid. monarch-merged.owl tetrahydrofolate anions|tetrahydrofolates|tetrahydrofolate anion chebi_ontology owl:Class CHEBI:25345 biolink:NamedThing methyltetrahydrofolate A group of heterocyclic compounds based on the N-methylated 5,6,7,8-tetrahydropteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units. monarch-merged.owl methyltetrahydrofolates chebi_ontology owl:Class CHEBI:57455 biolink:NamedThing (6R)-5,10-methenyltetrahydrofolate monarch-merged.owl owl:Class CHEBI:12113 biolink:NamedThing 5-hydroxypenta-2,4-diene-1,2,5-tricarboxylate(3-) monarch-merged.owl owl:Class CHEBI:27092 biolink:NamedThing tricarboxylic acid trianion monarch-merged.owl tricarboxylic acid trianions|tricarboxylate|tricarboxylates chebi_ontology owl:Class CHEBI:141790 biolink:NamedThing 3-hydroxybutane-1,2,3-tricarboxylate monarch-merged.owl owl:Class CHEBI:142422 biolink:NamedThing gamma-carboxy-L-glutamate(3-) monarch-merged.owl owl:Class CHEBI:15593 biolink:NamedThing 3-oxalomalate(3-) monarch-merged.owl owl:Class CHEBI:15598 biolink:NamedThing 2-methylcitrate(3-) monarch-merged.owl owl:Class CHEBI:15685 biolink:NamedThing L-2-succinylamino-6-oxoheptanedioate(3-) monarch-merged.owl owl:Class CHEBI:16087 biolink:NamedThing isocitrate(3-) monarch-merged.owl owl:Class CHEBI:16947 biolink:NamedThing citrate(3-) A tricarboxylic acid trianion, obtained by deprotonation of the three carboxy groups of citric acid. monarch-merged.owl 2-hydroxypropane-1,2,3-tricarboxylate|2-hydroxytricarballylate|2-hydroxy-1,2,3-propanetricarboxylate|cit|2-hydroxy-1,2,3-propanetricarboxylate(3-)|CITRATE ANION|citrate|2-hydroxy-1,2,3-propanetricarboxylic acid, ion(3-)|cit(3-) -3 C6H5O7 InChI=1S/C6H8O7/c7-3(8)1-6(13,5(11)12)2-4(9)10/h13H,1-2H2,(H,7,8)(H,9,10)(H,11,12)/p-3 KRKNYBCHXYNGOX-UHFFFAOYSA-K 189.09970 189.00517 OC(CC([O-])=O)(CC([O-])=O)C([O-])=O KEGG:C00158|Reaxys:1884707|PDBeChem:FLC|CAS:126-44-3|Gmelin:4239|Beilstein:1884707 CHEBI:13999|CHEBI:23321|CHEBI:42563 chebi_ontology owl:Class CHEBI:22210 biolink:NamedThing aconitate(3-) monarch-merged.owl owl:Class CHEBI:25548 biolink:NamedThing nitrilotriacetate(3-) monarch-merged.owl owl:Class CHEBI:29807 biolink:NamedThing glycyrrhizinate(3-) monarch-merged.owl owl:Class CHEBI:30904 biolink:NamedThing homoisocitrate(3-) monarch-merged.owl owl:Class CHEBI:36457 biolink:NamedThing homocitrate(3-) monarch-merged.owl owl:Class CHEBI:57429 biolink:NamedThing (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate monarch-merged.owl owl:Class CHEBI:57430 biolink:NamedThing (2S,3S)-2-hydroxytridecane-1,2,3-tricarboxylate monarch-merged.owl owl:Class CHEBI:57435 biolink:NamedThing (3S,4S)-3-hydroxytetradecane-1,3,4-tricarboxylate monarch-merged.owl owl:Class CHEBI:57471 biolink:NamedThing (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate monarch-merged.owl owl:Class CHEBI:57496 biolink:NamedThing 3-carboxy-cis,cis-muconate(3-) monarch-merged.owl owl:Class CHEBI:57663 biolink:NamedThing 2-caffeoylisocitrate(3-) monarch-merged.owl owl:Class CHEBI:57713 biolink:NamedThing 3-(2-carboxylatoethenyl)-cis,cis-muconate(3-) monarch-merged.owl owl:Class CHEBI:57732 biolink:NamedThing 4-carboxylato-2-hydroxyhexa-2,4-dienedioate(3-) monarch-merged.owl owl:Class CHEBI:57872 biolink:NamedThing (Z)-but-2-ene-1,2,3-tricarboxylate monarch-merged.owl owl:Class CHEBI:57992 biolink:NamedThing 2-(carboxylatomethoxy)succinate(3-) monarch-merged.owl owl:Class CHEBI:58075 biolink:NamedThing 2-hydroxy-4-oxobutane-1,2,4-tricarboxylate monarch-merged.owl owl:Class CHEBI:58114 biolink:NamedThing 2-carboxylato-cis,cis-muconate(3-) monarch-merged.owl owl:Class CHEBI:58142 biolink:NamedThing 4-carboxy-2-hydroxy-cis,cis-muconate(3-) monarch-merged.owl owl:Class CHEBI:58174 biolink:NamedThing but-1-ene-1,2,4-tricarboxylate monarch-merged.owl owl:Class CHEBI:58396 biolink:NamedThing aerobactinate(3-) monarch-merged.owl owl:Class CHEBI:58442 biolink:NamedThing pyrroloquinoline quinone(3-) monarch-merged.owl owl:Class CHEBI:58459 biolink:NamedThing pyrroloquinoline quinol(3-) monarch-merged.owl owl:Class CHEBI:58487 biolink:NamedThing 2'-deoxymugineate monarch-merged.owl owl:Class CHEBI:58678 biolink:NamedThing luteolin 7-O-[(beta-D-glucosyluronate)-(1->2)-(beta-D-glucosiduronate)] 4'-O-beta-D-glucosiduronate monarch-merged.owl owl:Class CHEBI:58763 biolink:NamedThing N-(3-carboxylatopropanoyl)-L-glutamate(3-) monarch-merged.owl owl:Class CHEBI:58818 biolink:NamedThing (1R,2S,5S,6S)-2-(3-carboxylatopropanoyl)-5-[(1-carboxylatovinyl)oxy]-6-hydroxycyclohex-3-ene-1-carboxylate monarch-merged.owl owl:Class CHEBI:58853 biolink:NamedThing (2S,3S)-2-methylcitrate(3-) monarch-merged.owl owl:Class CHEBI:58884 biolink:NamedThing (2R)-homocitrate(3-) monarch-merged.owl owl:Class CHEBI:58915 biolink:NamedThing (2E)-but-2-ene-1,2,3-tricarboxylate monarch-merged.owl owl:Class CHEBI:58931 biolink:NamedThing oxalatosuccinate(3-) monarch-merged.owl owl:Class CHEBI:62517 biolink:NamedThing tricarballylate monarch-merged.owl owl:Class CHEBI:63796 biolink:NamedThing N(alpha)-citryl-N(epsilon)-acetyl-N(epsilon)-hydroxylysine(3-) monarch-merged.owl owl:Class CHEBI:72697 biolink:NamedThing (2R)-dihomocitrate(3-) monarch-merged.owl owl:Class CHEBI:72699 biolink:NamedThing (2R)-trihomocitrate(3-) monarch-merged.owl owl:Class CHEBI:87491 biolink:NamedThing (2R,3E)-5-oxopent-3-ene-1,2,5-tricarboxylate monarch-merged.owl owl:Class CHEBI:35975 biolink:NamedThing 5-oxo monocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:136182 biolink:NamedThing tuberonate monarch-merged.owl owl:Class CHEBI:136184 biolink:NamedThing jasmonic acid anion monarch-merged.owl owl:Class CHEBI:136811 biolink:NamedThing 12-sulfojasmonate monarch-merged.owl owl:Class CHEBI:136813 biolink:NamedThing 11-sulfojasmonate monarch-merged.owl owl:Class CHEBI:16120 biolink:NamedThing 5-oxopentanoate monarch-merged.owl owl:Class CHEBI:58284 biolink:NamedThing 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate monarch-merged.owl owl:Class CHEBI:58863 biolink:NamedThing futalosinate monarch-merged.owl owl:Class CHEBI:58864 biolink:NamedThing dehypoxanthine futalosinate monarch-merged.owl owl:Class CHEBI:64286 biolink:NamedThing aminodeoxyfutalosinate monarch-merged.owl owl:Class CHEBI:70780 biolink:NamedThing 1-deoxy-11-oxopentalenate monarch-merged.owl owl:Class CHEBI:59558 biolink:NamedThing medium-chain fatty acid anion A fatty acid anion resulting from the deprotonation of the carboxylic acid moiety of a medium-chain fatty acid. monarch-merged.owl MCFA anions|medium-chain fatty acid anions|a medium chain fatty acid|medium-chain FA anion|medium-chain FA anions|MCFA anion -1 CO2R 44.010 43.98983 [O-]C([*])=O chebi_ontology owl:Class CHEBI:133174 biolink:NamedThing 2-hydroxydecanoate monarch-merged.owl owl:Class CHEBI:133738 biolink:NamedThing 2-hydroxyhexanoate monarch-merged.owl owl:Class CHEBI:138569 biolink:NamedThing (3E,5Z)-dodecadienoate monarch-merged.owl owl:Class CHEBI:18262 biolink:NamedThing dodecanoate monarch-merged.owl owl:Class CHEBI:24554 biolink:NamedThing hexadienoate monarch-merged.owl owl:Class CHEBI:25637 biolink:NamedThing octadienoate monarch-merged.owl owl:Class CHEBI:27689 biolink:NamedThing decanoate monarch-merged.owl owl:Class CHEBI:32361 biolink:NamedThing nonanoate monarch-merged.owl owl:Class CHEBI:32362 biolink:NamedThing heptanoate monarch-merged.owl owl:Class CHEBI:32369 biolink:NamedThing undecanoate monarch-merged.owl owl:Class CHEBI:33163 biolink:NamedThing dec-9-enoate monarch-merged.owl owl:Class CHEBI:74904 biolink:NamedThing isocaproate monarch-merged.owl owl:Class CHEBI:76616 biolink:NamedThing 3-hydroxylaurate monarch-merged.owl owl:Class CHEBI:77063 biolink:NamedThing 4,8-dimethylnonanoate monarch-merged.owl owl:Class CHEBI:77812 biolink:NamedThing 9-oxononanoate monarch-merged.owl owl:Class CHEBI:78116 biolink:NamedThing fatty acid anion 6:0 Any saturated fatty acid anion containing 6 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3. monarch-merged.owl fatty acid 6:0 -1 C6H11O2 115.15034 115.07590 [O-]C([*])=O chebi_ontology owl:Class CHEBI:83042 biolink:NamedThing undecenoate monarch-merged.owl owl:Class CHEBI:83045 biolink:NamedThing dodecenoate monarch-merged.owl owl:Class CHEBI:84184 biolink:NamedThing 3-methylundecanoate monarch-merged.owl owl:Class CHEBI:84274 biolink:NamedThing (E)-dodec-2-enoate monarch-merged.owl owl:Class CHEBI:12164 biolink:NamedThing 5-phosphoribosyl diphosphate A ribose diphosphate carrying an additional phosphate group at position 5. monarch-merged.owl chebi_ontology owl:Class CHEBI:21080 biolink:NamedThing ribose diphosphate monarch-merged.owl ribose diphosphates|ribose diphosphate chebi_ontology owl:Class CHEBI:35158 biolink:NamedThing ribose bisphosphate monarch-merged.owl ribose bisphosphate|ribose bisphosphates chebi_ontology owl:Class CHEBI:17994 biolink:NamedThing D-ribose 1,5-bisphosphate monarch-merged.owl owl:Class CHEBI:68689 biolink:NamedThing 5-phospho-alpha-D-ribose cyclic-1,2-phosphate monarch-merged.owl owl:Class CHEBI:79189 biolink:NamedThing D-ribofuranose-2,5-bisphosphate monarch-merged.owl owl:Class CHEBI:12194 biolink:NamedThing 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:12195 biolink:NamedThing 6-O-(N-acetyl-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:15935 biolink:NamedThing N-acetyl-D-glucosaminylphosphatidylinositol monarch-merged.owl owl:Class CHEBI:122 biolink:NamedThing (-)-usnic acid monarch-merged.owl owl:Class CHEBI:38319 biolink:NamedThing usnic acid monarch-merged.owl owl:Class CHEBI:38320 biolink:NamedThing (+)-usnic acid monarch-merged.owl owl:Class CHEBI:12266 biolink:NamedThing 8-amino-7-oxononanoate monarch-merged.owl owl:Class CHEBI:35984 biolink:NamedThing 7-oxo monocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:83797 biolink:NamedThing 3-hydroxy-9-oxo-9,10-seco-23,24-bisnorchola-1,3,5(10)-trien-22-oate monarch-merged.owl owl:Class CHEBI:1230 biolink:NamedThing sophorose monarch-merged.owl owl:Class CHEBI:24405 biolink:NamedThing glycosylglucose monarch-merged.owl owl:Class CHEBI:146448 biolink:NamedThing beta-D-Xylp-(1->6)-D-Glcp monarch-merged.owl owl:Class CHEBI:16177 biolink:NamedThing vicianose monarch-merged.owl owl:Class CHEBI:17057 biolink:NamedThing cellobiose monarch-merged.owl owl:Class CHEBI:17306 biolink:NamedThing maltose monarch-merged.owl owl:Class CHEBI:17676 biolink:NamedThing 2-(beta-D-glucopyranosyluronic acid)-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:17716 biolink:NamedThing lactose monarch-merged.owl owl:Class CHEBI:18411 biolink:NamedThing laminarabiose monarch-merged.owl owl:Class CHEBI:27522 biolink:NamedThing rutinose monarch-merged.owl owl:Class CHEBI:28053 biolink:NamedThing melibiose monarch-merged.owl owl:Class CHEBI:28066 biolink:NamedThing gentiobiose monarch-merged.owl owl:Class CHEBI:28189 biolink:NamedThing isomaltose monarch-merged.owl owl:Class CHEBI:33020 biolink:NamedThing kojibiose monarch-merged.owl owl:Class CHEBI:55406 biolink:NamedThing beta-D-apiofuranosyl-(1->6)-D-glucopyranose monarch-merged.owl owl:Class CHEBI:64351 biolink:NamedThing beta-D-Manp-(1->4)-D-Glcp monarch-merged.owl owl:Class CHEBI:7570 biolink:NamedThing nigerose monarch-merged.owl owl:Class CHEBI:1233 biolink:NamedThing 3-(all-trans-octaprenyl)benzene-1,2-diol monarch-merged.owl owl:Class CHEBI:84516 biolink:NamedThing 3-(all-trans-heptaprenyl)benzene-1,2-diol monarch-merged.owl owl:Class CHEBI:84517 biolink:NamedThing 3-(all-trans-nonaprenyl)benzene-1,2-diol monarch-merged.owl owl:Class CHEBI:84518 biolink:NamedThing 3-(all-trans-decaprenyl)benzene-1,2-diol monarch-merged.owl owl:Class CHEBI:12336 biolink:NamedThing alpha-cyclopiazonic acids monarch-merged.owl owl:Class CHEBI:12350 biolink:NamedThing beta-D-fructofuranose 2-phosphate monarch-merged.owl owl:Class CHEBI:27884 biolink:NamedThing D-fructofuranose 2-phosphate monarch-merged.owl owl:Class CHEBI:12357 biolink:NamedThing beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl group monarch-merged.owl owl:Class CHEBI:17571 biolink:NamedThing beta-D-galactosyl-(1->4)-N-acetyl-D-glucosaminyl group monarch-merged.owl owl:Class CHEBI:21524 biolink:NamedThing N-acetyl-D-glucosaminyl groups monarch-merged.owl owl:Class CHEBI:60104 biolink:NamedThing alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-D-glucosaminyl group monarch-merged.owl owl:Class CHEBI:60105 biolink:NamedThing alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-D-glucosaminyl(1-) group monarch-merged.owl owl:Class CHEBI:73776 biolink:NamedThing N-acetyl-D-glucosaminyl group monarch-merged.owl owl:Class CHEBI:12387 biolink:NamedThing beta-L-fucose 1-phosphate monarch-merged.owl owl:Class CHEBI:28319 biolink:NamedThing L-fucopyranose 1-phosphate monarch-merged.owl owl:Class CHEBI:12427 biolink:NamedThing N,N'-diacetylchitobiosyldiphosphodolichol monarch-merged.owl owl:Class CHEBI:18341 biolink:NamedThing diacetylchitobiosyldiphosphodolichol monarch-merged.owl owl:Class CHEBI:18396 biolink:NamedThing beta-D-mannosyldiacetylchitobiosyldiphosphodolichol monarch-merged.owl owl:Class CHEBI:124959 biolink:NamedThing (2S)-2-amino-5-[[amino(methylimino)methyl]amino]pentanoic acid monarch-merged.owl owl:Class CHEBI:22617 biolink:NamedThing arginine derivative monarch-merged.owl owl:Class CHEBI:83965 biolink:NamedThing L-arginine derivative monarch-merged.owl owl:Class CHEBI:83966 biolink:NamedThing D-arginine derivative monarch-merged.owl owl:Class CHEBI:84259 biolink:NamedThing iminoarginine monarch-merged.owl owl:Class CHEBI:86468 biolink:NamedThing dimethylarginine monarch-merged.owl owl:Class CHEBI:12532 biolink:NamedThing N,N-dihydroxy-L-tyrosine monarch-merged.owl owl:Class CHEBI:27177 biolink:NamedThing L-tyrosine derivative A proteinogenic amino acid derivative resulting from reaction of L-tyrosine at the amino group or the carboxy group, or from the replacement of any hydrogen of L-tyrosine by a heteroatom. monarch-merged.owl L-tyrosine derivatives owl:Class CHEBI:18103 biolink:NamedThing L-tyrosine methyl ester 4-sulfate monarch-merged.owl owl:Class CHEBI:21990 biolink:NamedThing O(4')-glycosyl-L-tyrosine monarch-merged.owl owl:Class CHEBI:28089 biolink:NamedThing N-hydroxytyrosine monarch-merged.owl owl:Class CHEBI:53680 biolink:NamedThing dihalogenated L-tyrosine monarch-merged.owl owl:Class CHEBI:79185 biolink:NamedThing 4-O-dimethylallyl-L-tyrosine monarch-merged.owl owl:Class CHEBI:50766 biolink:NamedThing N,N-dihydroxy-alpha-amino acid monarch-merged.owl owl:Class CHEBI:137007 biolink:NamedThing N,N-dihydroxy-L-polyhomomethionine monarch-merged.owl owl:Class CHEBI:47991 biolink:NamedThing N,N-dihydroxy-L-phenylalanine monarch-merged.owl owl:Class CHEBI:47993 biolink:NamedThing N,N-dihydroxy-L-tryptophan monarch-merged.owl owl:Class CHEBI:50765 biolink:NamedThing N,N-dihydroxyhexahomomethionine monarch-merged.owl owl:Class CHEBI:50767 biolink:NamedThing N,N-dihydroxydihomomethionine monarch-merged.owl owl:Class CHEBI:50768 biolink:NamedThing N,N-dihydroxytrihomomethionine monarch-merged.owl owl:Class CHEBI:50769 biolink:NamedThing N,N-dihydroxytetrahomomethionine monarch-merged.owl owl:Class CHEBI:50770 biolink:NamedThing N,N-dihydroxypentahomomethionine monarch-merged.owl owl:Class CHEBI:61132 biolink:NamedThing N,N-dihydroxy-L-isoleucine monarch-merged.owl owl:Class CHEBI:61141 biolink:NamedThing N,N-dihydroxy-L-valine monarch-merged.owl owl:Class CHEBI:140325 biolink:NamedThing secondary carboxamide A carboxamide resulting from the formal condensation of a carboxylic acid with a primary amine; formula RC(=O)NHR(1). monarch-merged.owl secondary carboxamides 0 CHNOR2 43.025 43.00581 N(C(*)=O)(*)[H] chebi_ontology owl:Class CHEBI:136702 biolink:NamedThing ximelagatran (hydroxylamine form) monarch-merged.owl owl:Class CHEBI:139398 biolink:NamedThing N-acyl-O-(3-sn-phosphatidyl)-L-serine monarch-merged.owl owl:Class CHEBI:15766 biolink:NamedThing N-benzoyl-D-arginine-4-nitroanilide monarch-merged.owl owl:Class CHEBI:16180 biolink:NamedThing N-acylglycine An N-acyl-amino acid in which amino acid specified is glycine. monarch-merged.owl N-Acylglycine 0 C3H4NO3R 102.06880 102.01912 OC(=O)CNC([*])=O MetaCyc:CPD-426|KEGG:C02055 CHEBI:21660|CHEBI:12484|CHEBI:7238 chebi_ontology owl:Class CHEBI:45906 biolink:NamedThing suramin monarch-merged.owl owl:Class CHEBI:64583 biolink:NamedThing sphingomyelin Any of a class of phospholipids in which the amino group of a sphingoid base is in amide linkage with one of several fatty acids, while the terminal hydroxy group of the sphingoid base is esterified to phosphorylcholine. monarch-merged.owl Ceramide phosphocholine|an N-(acyl)-sphingosylphosphocholine 0 C9H19N2O6PR2 282.23070 282.09807 C[N+](C)(C)CCOP([O-])(=O)OC[C@H](NC([*])=O)[C@H](O)[*] PMID:27242221|LIPID_MAPS_class:LMSP0301 chebi_ontology owl:Class CHEBI:64958 biolink:NamedThing N-(2-hydroxyhexacosanoyl)phytosphingosine monarch-merged.owl owl:Class CHEBI:65172 biolink:NamedThing ximelagatran monarch-merged.owl owl:Class CHEBI:83946 biolink:NamedThing N-acyl-L-alanine monarch-merged.owl owl:Class CHEBI:84481 biolink:NamedThing N,O-diacylethanolamine monarch-merged.owl owl:Class CHEBI:85283 biolink:NamedThing N-(saturated fatty acyl)ethanolamine monarch-merged.owl owl:Class CHEBI:85330 biolink:NamedThing dapdiamide A monarch-merged.owl owl:Class CHEBI:85332 biolink:NamedThing dapdiamide B monarch-merged.owl owl:Class CHEBI:85333 biolink:NamedThing dapdiamide C monarch-merged.owl owl:Class CHEBI:85347 biolink:NamedThing N(3)-fumaramoyl-(S)-2,3-diaminopropanoic acid monarch-merged.owl owl:Class CHEBI:85530 biolink:NamedThing N(1),N(8)-bis(coumaroyl)spermidine monarch-merged.owl owl:Class CHEBI:88361 biolink:NamedThing N-(naphthyl)carboxamide monarch-merged.owl owl:Class CHEBI:91273 biolink:NamedThing pyrrolysine monarch-merged.owl owl:Class CHEBI:157740 biolink:NamedThing N-(fatty acyl)-dopamine monarch-merged.owl owl:Class CHEBI:22160 biolink:NamedThing acetamides Compounds with the general formula RNHC(=O)CH3. monarch-merged.owl chebi_ontology owl:Class CHEBI:13790 biolink:NamedThing N-acetylarylamine monarch-merged.owl owl:Class CHEBI:146500 biolink:NamedThing D-Galp-(1->3)-D-GalpNAc An amino disaccharide that is 2-acetamido-2-deoxy-D-galactopyranose in which the hydroxy group at position 3 has been converted to the corresponding D-galactopyranoside. The stereochemistry at the anomeric position in each of the galactopyranose rings is not stated. monarch-merged.owl WURCS=2.0/2,2,1/[a2112h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5]/1-2/a3-b1|2-acetamido-2-deoxy-3-O-D-galactopyranosyl-D-galactopyranose|N-[(3R,4R,5R,6R)-2,5-dihydroxy-6-(hydroxymethyl)-4-[(3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-3-yl]acetamide|D-galacto-hexopyranosyl-(1->3)-2-acetamido-2-deoxy-D-galacto-hexopyranose|Gal(?1-3)GalNAc 0 C14H25NO11 InChI=1S/C14H25NO11/c1-4(18)15-7-12(9(20)6(3-17)24-13(7)23)26-14-11(22)10(21)8(19)5(2-16)25-14/h5-14,16-17,19-23H,2-3H2,1H3,(H,15,18)/t5-,6-,7-,8+,9+,10+,11-,12-,13?,14?/m1/s1 HMQPEDMEOBLSQB-PVSBWVJQSA-N 383.350 383.14276 O([C@@H]1[C@@H](NC(=O)C)C(O[C@@H]([C@@H]1O)CO)O)C2O[C@@H]([C@H](O)[C@H](O)[C@H]2O)CO GlyGen:G01416HI|GlyTouCan:G01416HI|KEGG:G10100 chebi_ontology owl:Class CHEBI:15363 biolink:NamedThing N-acetylindoxyl monarch-merged.owl owl:Class CHEBI:16319 biolink:NamedThing 2-acetamido-5-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:16796 biolink:NamedThing melatonin A member of the class of acetamides that is acetamide in which one of the hydrogens attached to the nitrogen atom is replaced by a 2-(5-methoxy-1H-indol-3-yl)ethyl group. It is a hormone secreted by the pineal gland in humans. monarch-merged.owl 5-methoxy-N-acetyltryptamine|melatonine|melatonin|N-[2-(5-methoxyindol-3-yl)ethyl]acetamide|N-Acetyl-5-methoxytryptamine|N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide|Melatonin 0 C13H16N2O2 InChI=1S/C13H16N2O2/c1-9(16)14-6-5-10-8-15-13-4-3-11(17-2)7-12(10)13/h3-4,7-8,15H,5-6H2,1-2H3,(H,14,16) DRLFMBDRBRZALE-UHFFFAOYSA-N 232.283 232.12118 C=1C=C(C=C2C(=CNC12)CCNC(=O)C)OC CAS:73-31-4|Drug_Central:1672|KEGG:D08170|Wikipedia:Melatonin|LINCS:LSM-4779|KEGG:C01598|PMID:16678784|DrugBank:DB01065|Reaxys:205542|PMID:18485664|Beilstein:205542|MetaCyc:N-ACETYL-5-METHOXY-TRYPTAMINE|HMDB:HMDB0001389|PMID:18212404|PDBeChem:ML1 CHEBI:6730|CHEBI:25180|CHEBI:14577 chebi_ontology owl:Class CHEBI:16844 biolink:NamedThing N(3')-acetyl-2-deoxystreptamine antibiotic monarch-merged.owl owl:Class CHEBI:17312 biolink:NamedThing N(1)-acetylspermine monarch-merged.owl owl:Class CHEBI:17645 biolink:NamedThing 4-acetamidobutanoic acid monarch-merged.owl owl:Class CHEBI:2024 biolink:NamedThing 5-acetamidopentanoic acid monarch-merged.owl owl:Class CHEBI:21545 biolink:NamedThing N-acetyl-L-amino acid monarch-merged.owl owl:Class CHEBI:21575 biolink:NamedThing N-acetyl-amino acid monarch-merged.owl owl:Class CHEBI:21622 biolink:NamedThing N-acetylneuraminic acids monarch-merged.owl chebi_ontology owl:Class CHEBI:2165 biolink:NamedThing 6-acetamido-3-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:22204 biolink:NamedThing acetylspermidine monarch-merged.owl owl:Class CHEBI:27856 biolink:NamedThing acetamide monarch-merged.owl owl:Class CHEBI:28884 biolink:NamedThing N-phenylacetamide monarch-merged.owl owl:Class CHEBI:52057 biolink:NamedThing N-acetylphosphinothricin monarch-merged.owl owl:Class CHEBI:55469 biolink:NamedThing N-acetyl-2-arylethylamine monarch-merged.owl owl:Class CHEBI:63266 biolink:NamedThing 4-deoxy-Delta(4)-beta-D-GlcpA-(1->3)-beta-D-GalpNAc6S monarch-merged.owl owl:Class CHEBI:64856 biolink:NamedThing N(epsilon)-GMP-N(alpha)-acetyl-L-lysine methyl ester monarch-merged.owl owl:Class CHEBI:7351 biolink:NamedThing N(4)-acetyl-L-2,4-diaminobutyric acid monarch-merged.owl owl:Class CHEBI:78840 biolink:NamedThing olefinic compound Any organic molecular entity that contains at least one C=C bond. monarch-merged.owl olefinic compounds chebi_ontology owl:Class CHEBI:131528 biolink:NamedThing aurachin B monarch-merged.owl owl:Class CHEBI:131720 biolink:NamedThing (3R)-3,4-epoxy-3-methylbut-1-ene monarch-merged.owl owl:Class CHEBI:131914 biolink:NamedThing violacein monarch-merged.owl owl:Class CHEBI:131915 biolink:NamedThing deoxyviolacein monarch-merged.owl owl:Class CHEBI:133793 biolink:NamedThing prostaglandin G1 monarch-merged.owl owl:Class CHEBI:134219 biolink:NamedThing decenals monarch-merged.owl owl:Class CHEBI:134339 biolink:NamedThing 2-acyl-4-prenylphloroglucinol monarch-merged.owl owl:Class CHEBI:134361 biolink:NamedThing allylic alcohol An alcohol where the hydroxy group is attached to a saturated carbon atom adjacent to a double bond (R groups may be H, organyl, etc.). monarch-merged.owl allylic alcohols 0 C3HOR5 53.040 53.00274 C(C(=C(*)*)*)(O)(*)* chebi_ontology owl:Class CHEBI:134362 biolink:NamedThing homoallylic alcohol monarch-merged.owl owl:Class CHEBI:134406 biolink:NamedThing prostaglandin G3 monarch-merged.owl owl:Class CHEBI:136850 biolink:NamedThing 2-acyl-4,6-diprenylphloroglucinol monarch-merged.owl owl:Class CHEBI:138219 biolink:NamedThing ent-atiserene monarch-merged.owl owl:Class CHEBI:138247 biolink:NamedThing cycloaraneosene monarch-merged.owl owl:Class CHEBI:138373 biolink:NamedThing 4-methylpent-3-en-1-yl acetate monarch-merged.owl owl:Class CHEBI:138375 biolink:NamedThing (1E)-2,6-dimethylhepta-1,5-dien-1-yl formate monarch-merged.owl owl:Class CHEBI:139337 biolink:NamedThing (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal monarch-merged.owl owl:Class CHEBI:14469 biolink:NamedThing isomethyleugenol monarch-merged.owl owl:Class CHEBI:15421 biolink:NamedThing perillyl aldehyde monarch-merged.owl owl:Class CHEBI:1845 biolink:NamedThing 4-hydroxy-3-polyprenylbenzoic acid monarch-merged.owl owl:Class CHEBI:24547 biolink:NamedThing hexadecenal monarch-merged.owl owl:Class CHEBI:2596 biolink:NamedThing alliin monarch-merged.owl owl:Class CHEBI:26775 biolink:NamedThing stilbene monarch-merged.owl owl:Class CHEBI:26776 biolink:NamedThing stilbenoid monarch-merged.owl owl:Class CHEBI:26799 biolink:NamedThing styrenes monarch-merged.owl owl:Class CHEBI:33641 biolink:NamedThing olefin Acyclic and cyclic hydrocarbons having one or more carbon-carbon double bonds, apart from the formal ones in aromatic compounds. The class olefins subsumes alkenes and cycloalkenes and the corresponding polyenes. monarch-merged.owl olefins|olefin chebi_ontology owl:Class CHEBI:33823 biolink:NamedThing enol Alkenols; the term refers specifically to vinylic alcohols, which have the structure HOCR'=CR2. Enols are tautomeric with aldehydes (R' = H) or ketones (R' =/= H). monarch-merged.owl enols|enol|alkenols 0 C2HOR3 41.029 41.00274 OC(=C(*)*)* chebi_ontology owl:Class CHEBI:37602 biolink:NamedThing allenes monarch-merged.owl owl:Class CHEBI:47985 biolink:NamedThing enol ether monarch-merged.owl owl:Class CHEBI:47989 biolink:NamedThing enamine monarch-merged.owl owl:Class CHEBI:50582 biolink:NamedThing alkenyl alcohol monarch-merged.owl owl:Class CHEBI:51688 biolink:NamedThing enal monarch-merged.owl owl:Class CHEBI:51702 biolink:NamedThing enoate ester An alpha,beta-unsaturated carboxylic ester of general formula R(1)R(2)C=CR(3)-C(=O)OR(4) (R(4) =/= H) in which the ester C=O function is conjugated to a C=C double bond at the alpha,beta position. monarch-merged.owl enoates|enoate esters|enoate 0 C3O2R4 68.03090 67.98983 [*]\C([*])=C(\[*])C(=O)O[*] chebi_ontology owl:Class CHEBI:51751 biolink:NamedThing enamide monarch-merged.owl owl:Class CHEBI:53339 biolink:NamedThing olefinic fatty acid Any fatty acid containing at least one C=C double bond. monarch-merged.owl PMID:832335 chebi_ontology owl:Class CHEBI:61316 biolink:NamedThing (3Z)-hex-3-en-1-yl acetate monarch-merged.owl owl:Class CHEBI:64136 biolink:NamedThing 4-hydroxy-3-all-trans-decaprenylbenzoic acid monarch-merged.owl owl:Class CHEBI:76170 biolink:NamedThing olefinic phospholipid monarch-merged.owl owl:Class CHEBI:79183 biolink:NamedThing 5,10-dihydro-9-dimethylallylphenazine-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:79383 biolink:NamedThing 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoic acid monarch-merged.owl owl:Class CHEBI:83043 biolink:NamedThing 4,4'-diapolycopenedioic acid monarch-merged.owl owl:Class CHEBI:84442 biolink:NamedThing 3-methoxy-4-hydroxy-5-all-trans-polyprenylbenzoic acid monarch-merged.owl owl:Class CHEBI:84494 biolink:NamedThing 4-hydroxy-3-all-trans-heptaprenylbenzoic acid monarch-merged.owl owl:Class CHEBI:84501 biolink:NamedThing 4-hydroxy-3-all-trans-nonaprenylbenzoic acid monarch-merged.owl owl:Class CHEBI:87772 biolink:NamedThing (4Z)-2-oxohept-4-enedioic acid monarch-merged.owl owl:Class CHEBI:87844 biolink:NamedThing 2-phytyl-1,4-dihydroxynaphthalene monarch-merged.owl owl:Class CHEBI:12777 biolink:NamedThing vitamin A Any member of a group of fat-soluble retinoids produced via metabolism of provitamin A carotenoids that exhibit biological activity against vitamin A deficiency. Vitamin A is involved in immune function, vision, reproduction, and cellular communication. monarch-merged.owl vitamin-A|vitamin A vitamer|vitamins A|vitamin A vitamers MetaCyc:Vitamin-A|Wikipedia:Vitamin_A chebi_ontology owl:Class CHEBI:26537 biolink:NamedThing retinoid Oxygenated derivatives of 3,7-dimethyl-1-(2,6,6-trimethylcyclohex-1-enyl)nona-1,3,5,7-tetraene and derivatives thereof. monarch-merged.owl retinoids|retinoid chebi_ontology owl:Class CHEBI:132246 biolink:NamedThing all-trans-3,4-didehydroretinol monarch-merged.owl owl:Class CHEBI:132259 biolink:NamedThing all-trans-4-hydroxyretinol monarch-merged.owl owl:Class CHEBI:139346 biolink:NamedThing all-trans-4-hydroxyretinal monarch-merged.owl owl:Class CHEBI:139558 biolink:NamedThing 1-O-(5,6-epoxyretinoyl)-beta-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:16179 biolink:NamedThing retinyl ester monarch-merged.owl owl:Class CHEBI:26534 biolink:NamedThing retinals monarch-merged.owl owl:Class CHEBI:28870 biolink:NamedThing 1-O-all-trans-retinoyl-beta-glucuronic acid monarch-merged.owl owl:Class CHEBI:50211 biolink:NamedThing retinol A retinoid consisting of 3,7-dimethylnona-2,4,6,8-tetraen-1-ol substituted at position 9 by a 2,6,6-trimethylcyclohex-1-en-1-yl group (geometry of the four exocyclic double bonds is not specified). monarch-merged.owl 3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraen-1-ol|retinol 0 C20H30O InChI=1S/C20H30O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,21H,7,10,14-15H2,1-5H3 FPIPGXGPPPQFEQ-UHFFFAOYSA-N 286.45160 286.22967 CC(C=CC=C(C)C=CC1=C(C)CCCC1(C)C)=CCO MetaCyc:Retinols|LINCS:LSM-5317 CHEBI:15037|CHEBI:26538 chebi_ontology owl:Class CHEBI:52228 biolink:NamedThing (3R)-all-trans-3-hydroxyretinal monarch-merged.owl owl:Class CHEBI:52592 biolink:NamedThing N-retinylidene-N-retinylphosphatidylethanolamine monarch-merged.owl owl:Class CHEBI:63795 biolink:NamedThing all-trans-4-hydroxyretinoic acid monarch-merged.owl owl:Class CHEBI:71063 biolink:NamedThing N-retinylidenephosphatidylethanolamine monarch-merged.owl owl:Class CHEBI:71980 biolink:NamedThing N-retinylidene-N-retinylethanolamine monarch-merged.owl owl:Class CHEBI:80657 biolink:NamedThing all-trans-18-hydroxyretinoic acid monarch-merged.owl owl:Class CHEBI:80658 biolink:NamedThing 5,6-epoxyretinoic acid monarch-merged.owl owl:Class CHEBI:84090 biolink:NamedThing hydroxyretinoic glucuronide monarch-merged.owl owl:Class CHEBI:84105 biolink:NamedThing ketoretinoic acid glucuronide monarch-merged.owl owl:Class CHEBI:33575 biolink:NamedThing carboxylic acid A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid. monarch-merged.owl Carbonsaeuren|acides carboxyliques|acido carboxilico|carboxylic acid|RC(=O)OH|acide carboxylique|Karbonsaeure|acidos carboxilicos|carboxylic acids|Carbonsaeure 0 CHO2R 45.01740 44.99765 OC([*])=O PMID:17147560|Wikipedia:Carboxylic_acid|PMID:18433345 CHEBI:13428|CHEBI:23027|CHEBI:13627 chebi_ontology owl:Class CHEBI:134367 biolink:NamedThing 2-bromocarboxylic acid monarch-merged.owl owl:Class CHEBI:15568 biolink:NamedThing (R)-2-halocarboxylic acid monarch-merged.owl owl:Class CHEBI:15791 biolink:NamedThing (S)-2-halocarboxylic acid monarch-merged.owl owl:Class CHEBI:22440 biolink:NamedThing alpha-N-substituted L-arginine monarch-merged.owl owl:Class CHEBI:24250 biolink:NamedThing gibberellin monarch-merged.owl owl:Class CHEBI:24669 biolink:NamedThing hydroxy carboxylic acid Any carboxylic acid with at least one hydroxy group. monarch-merged.owl hydroxy carboxylic acids|hydroxycarboxylic acids|hydroxycarboxylic acid chebi_ontology owl:Class CHEBI:25754 biolink:NamedThing oxo carboxylic acid Any compound that has an aldehydic or ketonic group as well as a carboxylic acid group in the same molecule. monarch-merged.owl oxo carboxylic acids|oxo acids chebi_ontology owl:Class CHEBI:25865 biolink:NamedThing penicillanic acids monarch-merged.owl owl:Class CHEBI:27093 biolink:NamedThing tricarboxylic acid An oxoacid containing three carboxy groups. monarch-merged.owl Trikarbonsaeure|tricarboxylic acids|Tricarbonsaeure 0 C3H3O6R 135.052 134.99296 Wikipedia:Tricarboxylic_acid chebi_ontology owl:Class CHEBI:33576 biolink:NamedThing sulfur-containing carboxylic acid Any carboxylic acid having a sulfur substituent. monarch-merged.owl S-containing carboxylic acids|S-containing carboxylic acid|sulfur-containing carboxylic acids chebi_ontology owl:Class CHEBI:33709 biolink:NamedThing amino acid A carboxylic acid containing one or more amino groups. monarch-merged.owl Aminocarbonsaeure|Aminosaeure|amino acids|Aminokarbonsaeure Wikipedia:Amino_acid CHEBI:13815|CHEBI:22477 chebi_ontology owl:Class CHEBI:33720 biolink:NamedThing carbohydrate acid monarch-merged.owl carbohydrate acid|carbohydrate acids chebi_ontology owl:Class CHEBI:33859 biolink:NamedThing aromatic carboxylic acid Any carboxylic acid in which the carboxy group is directly bonded to an aromatic ring. monarch-merged.owl aromatic carboxylic acids CHEBI:13817|CHEBI:13821|CHEBI:2830 chebi_ontology owl:Class CHEBI:35742 biolink:NamedThing tetracarboxylic acid monarch-merged.owl owl:Class CHEBI:35743 biolink:NamedThing pentacarboxylic acid monarch-merged.owl owl:Class CHEBI:36244 biolink:NamedThing dicarboxylic acid monoester monarch-merged.owl owl:Class CHEBI:36952 biolink:NamedThing carboxyalkyl phosphate monarch-merged.owl owl:Class CHEBI:46891 biolink:NamedThing azetidinecarboxylic acid monarch-merged.owl owl:Class CHEBI:48345 biolink:NamedThing pyrazinecarboxylic acid monarch-merged.owl owl:Class CHEBI:48436 biolink:NamedThing thiophenecarboxylic acid monarch-merged.owl owl:Class CHEBI:51569 biolink:NamedThing N-acyl-amino acid A carboxamide resulting from the formal condensation of a carboxylic acid with the amino group of an amino acid. monarch-merged.owl acylamino acids|acyl-amino-acid|N-acyl-amino-acid|N-acyl amino acid|acyl-amino-acids|N-acylamino acid|N-acyl-amino-acids|N-acylamino acids|N-acyl amino acids CHEBI:21653|CHEBI:22226 chebi_ontology owl:Class CHEBI:51705 biolink:NamedThing octacarboxylic acid monarch-merged.owl owl:Class CHEBI:59359 biolink:NamedThing hexacarboxylic acid monarch-merged.owl owl:Class CHEBI:60833 biolink:NamedThing naptalam monarch-merged.owl owl:Class CHEBI:78574 biolink:NamedThing pyrimidinecarboxylic acid Any pyrimidine that bears one or more carboxylic acid substituents. monarch-merged.owl pyrimidinecarboxylic acids chebi_ontology owl:Class CHEBI:83813 biolink:NamedThing proteinogenic amino acid Any of the 23 alpha-amino acids that are precursors to proteins, and are incorporated into proteins during translation. The group includes the 20 amino acids encoded by the nuclear genes of eukaryotes together with selenocysteine, pyrrolysine, and N-formylmethionine. Apart from glycine, which is non-chiral, all have L configuration. monarch-merged.owl canonical amino acid|canonical amino acids|proteinogenic amino acids Wikipedia:Proteinogenic_amino_acid chebi_ontology owl:Class CHEBI:64708 biolink:NamedThing one-carbon compound An organic molecular entity containing a single carbon atom (C1). monarch-merged.owl one-carbon compounds chebi_ontology owl:Class CHEBI:16183 biolink:NamedThing methane A one-carbon compound in which the carbon is attached by single bonds to four hydrogen atoms. It is a colourless, odourless, non-toxic but flammable gas (b.p. -161degreeC). monarch-merged.owl marsh gas|tetrahydridocarbon|metano|methane|methyl hydride|CH4|Methan|Methane 0 CH4 InChI=1S/CH4/h1H4 VNWKTOKETHGBQD-UHFFFAOYSA-N 16.04246 16.03130 [H]C([H])([H])[H] UM-BBD_compID:c0095|PMID:17791569|PMID:23104415|PMID:24259373|Wikipedia:Methane|KEGG:C01438|Patent:FR994032|Beilstein:1718732|PMID:24132456|CAS:74-82-8|PMID:23739479|PMID:23742231|MetaCyc:CH4|Gmelin:59|PMID:23718889|PMID:24161402|PMID:23376302|PMID:23756351|PMID:23353606|PMID:23397538|Reaxys:1718732|Patent:US2583090|HMDB:HMDB0002714 CHEBI:25220|CHEBI:14585|CHEBI:6811 chebi_ontology owl:Class CHEBI:16199 biolink:NamedThing urea A carbonyl group with two C-bound amine groups. The commercially available fertilizer has an analysis of 46-0-0 (N-P2O5-K2O). monarch-merged.owl ur|UREA|Carbamide|H2NC(O)NH2|Karbamid|Urea|E927b|carbonyldiamide|1728|Harnstoff|urea|carbamide|uree 0 CH4N2O InChI=1S/CH4N2O/c2-1(3)4/h(H4,2,3,4) XSQUKJJJFZCRTK-UHFFFAOYSA-N 60.05534 60.03236 NC(N)=O YMDB:YMDB00003|KEGG:C00086|Beilstein:635724|Gmelin:1378|ECMDB:ECMDB04172|CAS:57-13-6|DrugBank:DB03904|PMID:18037357|Reaxys:635724|Drug_Central:4264|MetaCyc:UREA|PPDB:1728|Wikipedia:Urea|KEGG:D00023|PMID:22770225|KNApSAcK:C00007314|PDBeChem:URE|HMDB:HMDB0000294|UM-BBD_compID:c0165 CHEBI:46379|CHEBI:9888|CHEBI:15292|CHEBI:27218 chebi_ontology owl:Class CHEBI:16397 biolink:NamedThing formamide monarch-merged.owl owl:Class CHEBI:16526 biolink:NamedThing carbon dioxide A one-carbon compound with formula CO2 in which the carbon is attached to each oxygen atom by a double bond. A colourless, odourless gas under normal conditions, it is produced during respiration by all animals, fungi and microorganisms that depend directly or indirectly on living or decaying plants for food. monarch-merged.owl E 290|methanedione|E290|Carbon dioxide|R-744|dioxidocarbon|carbonic anhydride|CO2|CARBON DIOXIDE|E-290|carbon dioxide|[CO2] 0 CO2 InChI=1S/CO2/c2-1-3 CURLTUGMZLYLDI-UHFFFAOYSA-N 44.010 43.98983 O=C=O KEGG:D00004|PMID:19854893|PMID:10826146|PMID:23828359|PMID:8818713|CAS:124-38-9|PMID:19259576|PMID:16659660|Beilstein:1900390|PMID:9730350|PMID:14639145|Wikipedia:Carbon_dioxide|Reaxys:1900390|PDBeChem:CO2|PMID:8869828|PMID:15050588|Gmelin:989|PPDB:119|PMID:11094503|PMID:16591971|PMID:24258718|PMID:17448243|PMID:23384758|PMID:11802652|PMID:8482095|PMID:17878298|PMID:16656478|HMDB:HMDB0001967|MolBase:752|MetaCyc:CARBON-DIOXIDE|PMID:17190796|PMID:17884085|PMID:11584085|KEGG:C00011|PMID:9611769|PMID:19043767|UM-BBD_compID:c0131|Drug_Central:4256 CHEBI:13283|CHEBI:48829|CHEBI:3283|CHEBI:23011|CHEBI:13284|CHEBI:13282|CHEBI:13285 chebi_ontology owl:Class CHEBI:16573 biolink:NamedThing carbonyl sulfide monarch-merged.owl owl:Class CHEBI:16698 biolink:NamedThing cyanamide monarch-merged.owl owl:Class CHEBI:16729 biolink:NamedThing formyl dihydrogen phosphate monarch-merged.owl owl:Class CHEBI:16830 biolink:NamedThing methylamine monarch-merged.owl owl:Class CHEBI:16842 biolink:NamedThing formaldehyde An aldehyde resulting from the formal oxidation of methanol. monarch-merged.owl Methanal|formaldehyde|Oxomethane|FORMALDEHYDE|Formaldehyde|Methylene oxide|FORMALIN|Formalin|Oxomethylene|Formaldehyd owl:Class CHEBI:17245 biolink:NamedThing carbon monoxide A one-carbon compound in which the carbon is joined only to a single oxygen. It is a colourless, odourless, tasteless, toxic gas. monarch-merged.owl Carbon monoxide|C#O|carbon monoxide|CO|[CO]|carbon(II) oxide|carbon monooxide|CARBON MONOXIDE owl:Class CHEBI:17672 biolink:NamedThing carbamoyl phosphate monarch-merged.owl owl:Class CHEBI:17760 biolink:NamedThing methyl sulfate monarch-merged.owl owl:Class CHEBI:17826 biolink:NamedThing methylarsonous acid monarch-merged.owl owl:Class CHEBI:18407 biolink:NamedThing hydrogen cyanide A one-carbon compound consisting of a methine group triple bonded to a nitrogen atom monarch-merged.owl [CHN]|Hydrogen cyanide|Blausaeure|methanenitrile|hydrogen cyanide|hydridonitridocarbon|HCN|Cyanwasserstoff|hydrogen(nitridocarbonate)|hydrocyanic acid|formonitrile owl:Class CHEBI:23012 biolink:NamedThing carbon disulfide monarch-merged.owl owl:Class CHEBI:24928 biolink:NamedThing isothiocyanic acid monarch-merged.owl owl:Class CHEBI:28024 biolink:NamedThing cyanic acid monarch-merged.owl hydrogen nitridooxocarbonate|Cyanic acid|[C(N)OH]|hydroxidonitridocarbon|HOCN|nitridooxocarbonic acid|Zyansaeure|Cyansaeure 0 CHNO InChI=1S/CHNO/c2-1-3/h3H XLJMAIOERFSOGZ-UHFFFAOYSA-N 43.02478 43.00581 OC#N KEGG:C01417|CAS:420-05-3|Gmelin:839|Beilstein:1732479|CAS:71000-82-3 CHEBI:23422|CHEBI:3968 chebi_ontology owl:Class CHEBI:28616 biolink:NamedThing carbamic acid A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised. monarch-merged.owl CARBAMIC ACID|Aminoformic acid|Aminoameisensaeure|Carbamic acid|Carbamidsaeure|Carbamate|carbamic acid 0 CH3NO2 InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4) KXDHJXZQYSOELW-UHFFFAOYSA-N 61.04006 61.01638 NC(O)=O Beilstein:1734754|DrugBank:DB04261|CAS:463-77-4|Gmelin:130345|PDBeChem:OUT|Wikipedia:Carbamic_acid|KEGG:C01563 CHEBI:44573|CHEBI:3386|CHEBI:23002|CHEBI:22504 chebi_ontology owl:Class CHEBI:29200 biolink:NamedThing thiocyanic acid monarch-merged.owl owl:Class CHEBI:29202 biolink:NamedThing isocyanic acid A colourless, volatile, poisonous inorganic compound with the formula HNCO; the simplest stable chemical compound that contains carbon, hydrogen, nitrogen, and oxygen, the four most commonly-found elements in organic chemistry and biology. monarch-merged.owl isocyanate|HN=C=O|HNCO|carbimide|isozyansaeure|oxidoazanediidocarbon|isocyansaeure|isocyanic acid|hydrogen isocyanate|methenamide|[C(NH)O]|ICA 0 CHNO InChI=1S/CHNO/c2-1-3/h2H OWIKHYCFFJSOEH-UHFFFAOYSA-N 43.02478 43.00581 N=C=O Beilstein:1616281|CAS:75-13-8|Gmelin:840|PMID:19494520|PMID:26124058|PMID:977566|Reaxys:1616281|PMID:26760716 chebi_ontology owl:Class CHEBI:29852 biolink:NamedThing methylarsonic acid monarch-merged.owl owl:Class CHEBI:3311 biolink:NamedThing calcium carbonate A calcium salt with formula CCaO3. monarch-merged.owl kohlensaurer Kalk|carbonato de calcio|calcium carbonate (1:1)|carbonic acid calcium salt (1:1)|carbonate de calcium|Calcium carbonate|CaCO3|calcium carbonate|Calciumcarbonat|calcium trioxidocarbonate|Kalziumkarbonat|E 170|Precipitated calcium carbonate 0 CCaO3|CO3.Ca InChI=1S/CH2O3.Ca/c2-1(3)4;/h(H2,2,3,4);/q;+2/p-2 VTYYLEPIZMXCLO-UHFFFAOYSA-L 100.087 99.94733 [Ca+2].C(=O)([O-])[O-] BPDB:108|DrugBank:DB06724|KEGG:C08129|CAS:471-34-1|PPDB:108|Wikipedia:Calcium_carbonate|KEGG:D00932|Reaxys:8008338 chebi_ontology owl:Class CHEBI:36958 biolink:NamedThing carbonothioic O,O-acid monarch-merged.owl owl:Class CHEBI:36959 biolink:NamedThing carbonothioic O,S-acid monarch-merged.owl owl:Class CHEBI:39279 biolink:NamedThing halomethane A haloalkane that is methane in which one (or more) of the hydrogens have been replaced by a halogen atom/halogen atoms. monarch-merged.owl halomethanes|halomethane chebi_ontology owl:Class CHEBI:42820 biolink:NamedThing guanidine monarch-merged.owl owl:Class CHEBI:48376 biolink:NamedThing carbamimidic acid monarch-merged.owl isourea|HO-C(=NH)-NH2|Isoharnstoff|carbamimic acid|carbonamidimidic acid|H2N-C(OH)=NH|pseudourea|H2N-C(=NH)-OH|carbamimidic acid 0 CH4N2O InChI=1S/CH4N2O/c2-1(3)4/h(H4,2,3,4) XSQUKJJJFZCRTK-UHFFFAOYSA-N 60.05534 60.03236 NC(O)=N CAS:4744-36-9|Beilstein:773698 chebi_ontology owl:Class CHEBI:48431 biolink:NamedThing formimidic acid monarch-merged.owl owl:Class CHEBI:70755 biolink:NamedThing methyltelluronic acid monarch-merged.owl owl:Class CHEBI:128 biolink:NamedThing (S)-(-)-alpha-terpineol monarch-merged.owl owl:Class CHEBI:22469 biolink:NamedThing alpha-terpineol monarch-merged.owl owl:Class CHEBI:300 biolink:NamedThing (R)-(+)-alpha-terpineol monarch-merged.owl owl:Class CHEBI:12834 biolink:NamedThing n-alkanal monarch-merged.owl owl:Class CHEBI:59768 biolink:NamedThing aliphatic aldehyde monarch-merged.owl owl:Class CHEBI:35746 biolink:NamedThing fatty aldehyde monarch-merged.owl owl:Class CHEBI:128459 biolink:NamedThing valienol 1-phosphate monarch-merged.owl owl:Class CHEBI:128754 biolink:NamedThing GDP-valienol monarch-merged.owl owl:Class CHEBI:131930 biolink:NamedThing validamine 7-phosphate monarch-merged.owl owl:Class CHEBI:131938 biolink:NamedThing validoxylamine A 7'-phosphate monarch-merged.owl owl:Class CHEBI:24846 biolink:NamedThing inositol phosphate monarch-merged.owl owl:Class CHEBI:12875 biolink:NamedThing trans-2-coumarate monarch-merged.owl owl:Class CHEBI:47921 biolink:NamedThing cis-2-coumarate monarch-merged.owl owl:Class CHEBI:47784 biolink:NamedThing nucleotide conjugate monarch-merged.owl owl:Class CHEBI:35241 biolink:NamedThing nucleotide-carbohydrate monarch-merged.owl owl:Class CHEBI:50726 biolink:NamedThing CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerol monarch-merged.owl owl:Class CHEBI:62566 biolink:NamedThing CDP-1L-myo-inositol monarch-merged.owl owl:Class CHEBI:12876 biolink:NamedThing trans-4-coumarate monarch-merged.owl owl:Class CHEBI:128770 biolink:NamedThing 12,18-dihydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:129091 biolink:NamedThing (9Z,12R)-12,18-dihydroxyoctadecenoic acid monarch-merged.owl owl:Class CHEBI:130073 biolink:NamedThing 5,20-diHEPE monarch-merged.owl owl:Class CHEBI:132324 biolink:NamedThing 20-HETrE monarch-merged.owl owl:Class CHEBI:133381 biolink:NamedThing 9,10-epoxy-18-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:138265 biolink:NamedThing 9,10-epoxy-18-hydroxy-(12Z)-octadecenoic acid monarch-merged.owl owl:Class CHEBI:138270 biolink:NamedThing 12,13-epoxy-18-hydroxy-(9Z)-octadecenoic acid monarch-merged.owl owl:Class CHEBI:138272 biolink:NamedThing 8,9-epoxy-20-hydroxy-(5Z,11Z,14Z)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:138273 biolink:NamedThing 11,12-epoxy-20-hydroxy-(5Z,8Z,14Z)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:138274 biolink:NamedThing 14,15-epoxy-20-hydroxy-(5Z,8Z,11Z)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:140997 biolink:NamedThing omega-hydroxy-long-chain fatty acid monarch-merged.owl owl:Class CHEBI:147297 biolink:NamedThing omega-hydroxy-ultra-long-chain fatty acid monarch-merged.owl owl:Class CHEBI:17409 biolink:NamedThing 10-hydroxycapric acid monarch-merged.owl owl:Class CHEBI:17869 biolink:NamedThing 6-hydroxyhexanoic acid monarch-merged.owl owl:Class CHEBI:33404 biolink:NamedThing 3-hydroxypropionic acid monarch-merged.owl owl:Class CHEBI:39567 biolink:NamedThing 12-hydroxylauric acid monarch-merged.owl owl:Class CHEBI:76325 biolink:NamedThing 26-hydroxyhexacosanoic acid monarch-merged.owl owl:Class CHEBI:76930 biolink:NamedThing omega-hydroxytetracosanoic acid monarch-merged.owl owl:Class CHEBI:76933 biolink:NamedThing 3,18-dihydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:76934 biolink:NamedThing 3,12-dihydroxylauric acid monarch-merged.owl owl:Class CHEBI:79312 biolink:NamedThing 18-hydroxyoleic acid monarch-merged.owl owl:Class CHEBI:90976 biolink:NamedThing 20-hydroxylipoxin A4 monarch-merged.owl owl:Class CHEBI:90978 biolink:NamedThing 20-hydroxylipoxin B4 monarch-merged.owl owl:Class CHEBI:90979 biolink:NamedThing 5,20-DiHETE monarch-merged.owl owl:Class CHEBI:90982 biolink:NamedThing 8,20-DiHETE monarch-merged.owl owl:Class CHEBI:90990 biolink:NamedThing 12,20-DiHETE monarch-merged.owl owl:Class CHEBI:90992 biolink:NamedThing 20-hydroxy-6-trans-leukotriene B4 monarch-merged.owl owl:Class CHEBI:136406 biolink:NamedThing 13-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:136638 biolink:NamedThing 9-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:136819 biolink:NamedThing 5-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:19660 biolink:NamedThing 2-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:28724 biolink:NamedThing 9,10-dihydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:33197 biolink:NamedThing (R)-10-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:50578 biolink:NamedThing 3-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:79182 biolink:NamedThing 18-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:12886 biolink:NamedThing (R)-4'-phosphopantothenate(1-) monarch-merged.owl owl:Class CHEBI:37481 biolink:NamedThing amidoalkyl phosphate monarch-merged.owl owl:Class CHEBI:15905 biolink:NamedThing (R)-4'-phosphopantothenic acid monarch-merged.owl owl:Class CHEBI:20891 biolink:NamedThing (R)-4'-phosphopantothenate(2-) monarch-merged.owl owl:Class CHEBI:26073 biolink:NamedThing phosphopantetheine monarch-merged.owl owl:Class CHEBI:129 biolink:NamedThing (-)-beta-phellandrene monarch-merged.owl owl:Class CHEBI:48741 biolink:NamedThing beta-phellandrene monarch-merged.owl owl:Class CHEBI:53 biolink:NamedThing (+)-beta-phellandrene monarch-merged.owl owl:Class CHEBI:15904 biolink:NamedThing long-chain fatty acid A fatty acid with a chain length ranging from C13 to C22. monarch-merged.owl LCFAs|LCFA|Long-chain fatty acid|long-chain fatty acids|Higher fatty acid 0 CHO2R 45.017 44.99765 OC([*])=O KEGG:C00638 CHEBI:6528|CHEBI:13655|CHEBI:25075|CHEBI:14529 chebi_ontology owl:Class CHEBI:131863 biolink:NamedThing docosanoid monarch-merged.owl owl:Class CHEBI:132228 biolink:NamedThing (13S,14S)-epoxy-(4Z,7Z,9E,11E,16Z,19Z)-docosahexaenoic acid monarch-merged.owl owl:Class CHEBI:132473 biolink:NamedThing 13-hydroxytetradecanoic acid monarch-merged.owl owl:Class CHEBI:132909 biolink:NamedThing 5(S),6(S)-epoxy-18(R)-hydroxy-(7E,9E,11Z,14Z,16E)-icosapentaenoic acid monarch-merged.owl owl:Class CHEBI:133990 biolink:NamedThing (9S,10E,12Z,14E,16S)-9,16-bis(hydroperoxy)octadecatrienoic acid monarch-merged.owl owl:Class CHEBI:134417 biolink:NamedThing 10,11-dihydro-12-oxoleukotriene B4 monarch-merged.owl owl:Class CHEBI:134542 biolink:NamedThing oxodocosahexaenoic acid monarch-merged.owl owl:Class CHEBI:134613 biolink:NamedThing hydroperoxyoctadecenoic acid monarch-merged.owl owl:Class CHEBI:134615 biolink:NamedThing hydroperoxyoctadecatrienoic acid monarch-merged.owl owl:Class CHEBI:134617 biolink:NamedThing epoxystearic acid monarch-merged.owl owl:Class CHEBI:134641 biolink:NamedThing hydroperoxy(epoxy)icosatrienoic acid monarch-merged.owl owl:Class CHEBI:134645 biolink:NamedThing hydroperoxy(hydroxy)icosapentaenoic acid monarch-merged.owl owl:Class CHEBI:134651 biolink:NamedThing hydroxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136113 biolink:NamedThing (4Z,7Z,10Z,13Z,15E,17S,19Z)-17-hydroperoxydocosahexaenoic acid monarch-merged.owl owl:Class CHEBI:136118 biolink:NamedThing (4Z,7Z,10Z,13Z,15E,17S)-17-hydroperoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136352 biolink:NamedThing (7Z,10Z,13Z,15E,19Z)-17-hydroperoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136353 biolink:NamedThing (7Z,10Z,12E,16Z,19Z)-14-hydroperoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136354 biolink:NamedThing (4Z,7Z,10Z,12E,16Z)-14-hydroperoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136355 biolink:NamedThing 5(S),6(S)-epoxy-18-hydroxy-(7E,9E,11Z,14Z,16E)-icosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136574 biolink:NamedThing epoxydocosatetraenoic acid monarch-merged.owl owl:Class CHEBI:136587 biolink:NamedThing (4Z,7Z,11Z,13Z,15E,17S,19Z)-10,17-bis(hydroperoxy)docosahexaenoic acid monarch-merged.owl owl:Class CHEBI:136594 biolink:NamedThing (4Z,7Z,11Z,13Z,15E,17S)-10,17-bis(hydroperoxy)docosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136595 biolink:NamedThing (7Z,11Z,13Z,15E,19Z)-10,17-bis(hydroperoxy)docosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136597 biolink:NamedThing 12-oxo-6-trans-leukotriene B4 monarch-merged.owl owl:Class CHEBI:136627 biolink:NamedThing hydroperoxyicosatrienoic acid monarch-merged.owl owl:Class CHEBI:136633 biolink:NamedThing (9Z,11Z,13S,15Z)-12,13-epoxyoctadecatrienoic acid monarch-merged.owl owl:Class CHEBI:136656 biolink:NamedThing (5Z,9E,11Z,14Z,17Z)-8-hydroperoxyicosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136657 biolink:NamedThing (4Z,7Z,11E,13Z,16Z,19Z)-10-hydroperoxydocosahexaenoic acid monarch-merged.owl owl:Class CHEBI:138138 biolink:NamedThing epoxy(hydroxy)icosatrienoic acid monarch-merged.owl owl:Class CHEBI:138293 biolink:NamedThing bis(hydroperoxy)icosatetraenoic acid monarch-merged.owl owl:Class CHEBI:138327 biolink:NamedThing hydroperoxy(hydroxy)icosatetraenoic acid monarch-merged.owl owl:Class CHEBI:142384 biolink:NamedThing fatty acid 14:2 monarch-merged.owl owl:Class CHEBI:15631 biolink:NamedThing (5Z,9E,14Z)-(8xi,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoic acid monarch-merged.owl owl:Class CHEBI:15647 biolink:NamedThing leukotriene B4 monarch-merged.owl owl:Class CHEBI:15651 biolink:NamedThing leukotriene A4 monarch-merged.owl owl:Class CHEBI:15653 biolink:NamedThing (9Z,13S,15Z)-12,13-epoxyoctadeca-9,11,15-trienoic acid monarch-merged.owl owl:Class CHEBI:15756 biolink:NamedThing hexadecanoic acid A straight-chain, sixteen-carbon, saturated long-chain fatty acid. monarch-merged.owl n-hexadecoic acid|n-hexadecanoic acid|CH3-[CH2]14-COOH|16:00|Palmitinsaeure|Pentadecanecarboxylic acid|C16|1-Pentadecanecarboxylic acid|Palmitic acid|PALMITIC ACID|hexadecoic acid|palmitic acid|Hexadecylic acid|cetylic acid|Palmitate|1-hexyldecanoic acid|Hexaectylic acid|hexadecanoic acid|Palmitinic acid|FA 16:0|C16:0|Hexadecanoate|C16 fatty acid 0 C16H32O2 InChI=1S/C16H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h2-15H2,1H3,(H,17,18) IPCSVZSSVZVIGE-UHFFFAOYSA-N 256.42410 256.24023 CCCCCCCCCCCCCCCC(O)=O PMID:15357969|PMID:1589452|PMID:25584012|PMID:16884313|PMID:22735334|PPDB:1336|DrugBank:DB03796|Wikipedia:Palmitic_acid|MetaCyc:PALMITATE|KNApSAcK:C00001233|Gmelin:190200|Beilstein:607489|CAS:57-10-3|LIPID_MAPS_instance:LMFA01010001|PMID:17502136|HMDB:HMDB0000220|KNApSAcK:C00030479|Reaxys:607489|KEGG:C00249|PMID:17439666|KEGG:D05341|PMID:28600633|PMID:20001317|PMID:16509590|PDBeChem:PLM|PMID:12492626 CHEBI:35978|CHEBI:24542|CHEBI:44952|CHEBI:29889|CHEBI:24550|CHEBI:233028|CHEBI:24540|CHEBI:24541|CHEBI:14730 chebi_ontology owl:Class CHEBI:15843 biolink:NamedThing arachidonic acid A long-chain fatty acid that is a C20, polyunsaturated fatty acid having four (Z)-double bonds at positions 5, 8, 11 and 14. monarch-merged.owl (5Z,8Z,11Z,14Z)-Icosatetraenoic acid|Arachidonic acid|(5Z,8Z,11Z,14Z)-5,8,11,14-icosatetraenoic acid|cis-Delta(5,8,11,14)-eicosatetraenoic acid|(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoic acid|ARACHIDONIC ACID|Arachidonate|AA|Arachidonsaeure|all-cis-5,8,11,14-eicosatetraenoic acid|cis-5,8,11,14-Eicosatetraenoic acid|ARA 0 C20H32O2 InChI=1S/C20H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h6-7,9-10,12-13,15-16H,2-5,8,11,14,17-19H2,1H3,(H,21,22)/b7-6-,10-9-,13-12-,16-15- YZXBAPSDXZZRGB-DOFZRALJSA-N 304.46690 304.24023 CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(O)=O PMID:25584012|CAS:506-32-1|DrugBank:DB04557|PMID:2820055|Gmelin:58972|LIPID_MAPS_instance:LMFA01030001|Reaxys:1913991|Wikipedia:Arachidonic_acid|HMDB:HMDB0001043|PMID:15129302|KNApSAcK:C00000388|PMID:18931599|Beilstein:1913991|MetaCyc:ARACHIDONIC_ACID|KEGG:C00219|PMID:18973997|PDBeChem:ACD CHEBI:2799|CHEBI:40501|CHEBI:22608 chebi_ontology owl:Class CHEBI:16285 biolink:NamedThing phytanic acid A branched-chain saturated fatty acid consisting of hexadecanoic acid carrying methyl substituents at positions 3, 7, 11 and 15. monarch-merged.owl 3,7,11,15-Tetramethyl-hexadecansaeure|3,7,11,15-tetramethylhexadecanoic acid|Phytanic acid|3,7,11,15-tetramethyl hexadecanoic acid|3,7,11,15-tetramethyl-hexadecanoic acid 0 C20H40O2 InChI=1S/C20H40O2/c1-16(2)9-6-10-17(3)11-7-12-18(4)13-8-14-19(5)15-20(21)22/h16-19H,6-15H2,1-5H3,(H,21,22) RLCKHJSFHOZMDR-UHFFFAOYSA-N 312.53040 312.30283 CC(C)CCCC(C)CCCC(C)CCCC(C)CC(O)=O PMID:9819701|LIPID_MAPS_instance:LMFA01020251|Reaxys:1789963|KEGG:C01607|PMID:12187408|CAS:14721-66-5|PMID:17956237|Beilstein:1789963 CHEBI:8189|CHEBI:26111 chebi_ontology owl:Class CHEBI:18164 biolink:NamedThing (2S)-2-hydroxyphytanic acid monarch-merged.owl owl:Class CHEBI:23902 biolink:NamedThing icosenoic acid monarch-merged.owl owl:Class CHEBI:24545 biolink:NamedThing hexadecatrienoic acid monarch-merged.owl owl:Class CHEBI:24548 biolink:NamedThing hexadecenoic acid monarch-merged.owl owl:Class CHEBI:25627 biolink:NamedThing octadecadienoic acid Any straight-chain, C18 polyunsaturated fatty acid having two C=C double bonds. monarch-merged.owl C18:2|octadecadienoic acid|FA (18:2)|18:2 0 C18H32O2 280.446 280.24023 PMID:6794350|CAS:26764-25-0 chebi_ontology owl:Class CHEBI:25633 biolink:NamedThing octadecatrienoic acid monarch-merged.owl owl:Class CHEBI:25634 biolink:NamedThing octadecenoic acid monarch-merged.owl owl:Class CHEBI:25635 biolink:NamedThing octadecenynoic acid monarch-merged.owl owl:Class CHEBI:27105 biolink:NamedThing tridecadienoic acid monarch-merged.owl owl:Class CHEBI:27781 biolink:NamedThing myristoleic acid monarch-merged.owl owl:Class CHEBI:27814 biolink:NamedThing 12-dehydro-leukotriene B4 monarch-merged.owl owl:Class CHEBI:28822 biolink:NamedThing icosanoic acid monarch-merged.owl owl:Class CHEBI:28842 biolink:NamedThing octadecanoic acid A C18 straight-chain saturated fatty acid component of many animal and vegetable lipids. As well as in the diet, it is used in hardening soaps, softening plastics and in making cosmetics, candles and plastics. monarch-merged.owl STEARIC ACID|n-octadecanoic acid|Oktadekansaeure|Octadecansaeure|acide octadecanoique|Octadecanoic acid|octadecoic acid|acide stearique|Stearinsaeure|C18:0|18:0|octadecanoic acid|CH3-[CH2]16-COOH|stearic acid 0 C18H36O2 InChI=1S/C18H36O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h2-17H2,1H3,(H,19,20) QIQXTHQIDYTFRH-UHFFFAOYSA-N 284.478 284.27153 C(CCCCCCCCCC)CCCCCCC(=O)O DrugBank:DB03193|PMID:17439666|PMID:26884207|PMID:19838949|Wikipedia:Stearic_acid|HMDB:HMDB0000827|MetaCyc:STEARIC_ACID|Beilstein:608585|PMID:16448636|CAS:57-11-4|PDBeChem:STE|PMID:18982377|KEGG:C01530|Drug_Central:4611|PMID:22735334|Gmelin:11738|PMID:11425337|KEGG:D00119|LIPID_MAPS_instance:LMFA01010018|Reaxys:608585|PMID:19468063|KNApSAcK:C00001238|PMID:7763343 CHEBI:25631|CHEBI:45710 chebi_ontology owl:Class CHEBI:28875 biolink:NamedThing tetradecanoic acid A straight-chain, fourteen-carbon, long-chain saturated fatty acid mostly found in milk fat. monarch-merged.owl n-Tetradecan-1-oic acid|14:0|C14|14|Myristic acid|14:00|myristic acid|n-Tetradecoic acid|Myristinsaeure|Tetradecanoic acid|tetradecoic acid|CH3-[CH2]12-COOH|MYRISTIC ACID|1-tetradecanecarboxylic acid|n-tetradecanoic acid|acide tetradecanoique 0 C14H28O2 InChI=1S/C14H28O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14(15)16/h2-13H2,1H3,(H,15,16) TUNFSRHWOTWDNC-UHFFFAOYSA-N 228.37090 228.20893 CCCCCCCCCCCCCC(O)=O KNApSAcK:C00001228|PMID:22030224|PMID:13129458|PMID:28600633|PMID:16509590|PDBeChem:MYR|DrugBank:DB08231|PMID:6802973|PMID:19786012|HMDB:HMDB0000806|Reaxys:508624|PMID:20634506|PMID:15149689|LIPID_MAPS_instance:LMFA01010014|KEGG:C06424|PMID:16554156|PMID:21955528|PMID:19955401|PMID:27206979|Wikipedia:Myristic_acid|PMID:20920594|PMID:19154695|Beilstein:508624|PMID:19761868|PMID:19902021|Gmelin:242115|CAS:544-63-8|MetaCyc:CPD-7836 CHEBI:44232|CHEBI:278516|CHEBI:73168|CHEBI:7056|CHEBI:26897 chebi_ontology owl:Class CHEBI:28941 biolink:NamedThing docosanoic acid monarch-merged.owl owl:Class CHEBI:32365 biolink:NamedThing heptadecanoic acid monarch-merged.owl owl:Class CHEBI:32389 biolink:NamedThing all-cis-octadeca-6,9,12,15-tetraenoic acid monarch-merged.owl owl:Class CHEBI:34784 biolink:NamedThing hepoxilin B3 monarch-merged.owl owl:Class CHEBI:36004 biolink:NamedThing tetradecenoic acid monarch-merged.owl owl:Class CHEBI:36005 biolink:NamedThing docosahexaenoic acid Any C22 polyunsaturated fatty acid containing six double bonds. monarch-merged.owl docosahexaenoic acid|DHA|docosahexaenoic acids 0 C22H32O2 328.489 328.24023 chebi_ontology owl:Class CHEBI:36006 biolink:NamedThing icosapentaenoic acid monarch-merged.owl owl:Class CHEBI:36031 biolink:NamedThing docosenoic acid monarch-merged.owl owl:Class CHEBI:36033 biolink:NamedThing icosatetraenoic acid A 20-carbon, polyunsaturated fatty acid having four double bonds at unspecified positions. monarch-merged.owl eicosatetraenoic acid|icosatetraenoic acids|C20:4|20:4|icosatetraenoic acid|eicosatetraenoic acids 0 C20H32O2 304.46690 304.24023 OC([*])=O PMID:23475189 chebi_ontology owl:Class CHEBI:36036 biolink:NamedThing fatty acid 20:3 monarch-merged.owl owl:Class CHEBI:36190 biolink:NamedThing hepoxilin A3 monarch-merged.owl owl:Class CHEBI:36201 biolink:NamedThing trioxilin monarch-merged.owl owl:Class CHEBI:36275 biolink:NamedThing HETE Any monohydroxylated icosanoid having four double bonds. monarch-merged.owl hydroxyeicosatetraenoic acids|HETEs|hydroxyeicosatetraenoic acid PMID:11123211|PMID:12681244|PMID:17640979 chebi_ontology owl:Class CHEBI:37248 biolink:NamedThing 3-hydroxypalmitic acid monarch-merged.owl owl:Class CHEBI:37251 biolink:NamedThing 3-oxopalmitic acid monarch-merged.owl owl:Class CHEBI:37270 biolink:NamedThing 3-oxotetradecanoic acid monarch-merged.owl owl:Class CHEBI:37810 biolink:NamedThing octadecatetraenoic acid monarch-merged.owl owl:Class CHEBI:38299 biolink:NamedThing vernolic acid monarch-merged.owl owl:Class CHEBI:39246 biolink:NamedThing nonadecanoic acid monarch-merged.owl owl:Class CHEBI:39250 biolink:NamedThing isopentadecanoic acid monarch-merged.owl owl:Class CHEBI:42504 biolink:NamedThing pentadecanoic acid monarch-merged.owl owl:Class CHEBI:43722 biolink:NamedThing isomyristic acid monarch-merged.owl owl:Class CHEBI:49175 biolink:NamedThing 2-hydroxy-3-methylhexadecanoic acid monarch-merged.owl owl:Class CHEBI:51340 biolink:NamedThing pristanic acid monarch-merged.owl owl:Class CHEBI:52347 biolink:NamedThing 3-hydroxyicosanoic acid monarch-merged.owl owl:Class CHEBI:52350 biolink:NamedThing 3-oxoicosanoic acid monarch-merged.owl owl:Class CHEBI:53486 biolink:NamedThing all-cis-icosa-8,11,14-trienoic acid monarch-merged.owl owl:Class CHEBI:59270 biolink:NamedThing 2-hydroxymyristic acid monarch-merged.owl owl:Class CHEBI:60956 biolink:NamedThing colneleic acid monarch-merged.owl owl:Class CHEBI:60959 biolink:NamedThing colnelenic acid monarch-merged.owl owl:Class CHEBI:61204 biolink:NamedThing docosapentaenoic acid monarch-merged.owl owl:Class CHEBI:61205 biolink:NamedThing docosatetraenoic acid monarch-merged.owl owl:Class CHEBI:61704 biolink:NamedThing oxoicosatetraenoic acid Any C20 polyunsaturated fatty acid having four double bonds and at least one oxo group. monarch-merged.owl oxoETE|oxoicosatetraenoic acid|oxoETEs|keto-ETE|ketoeicosatetraenoic acids|oxoicosatetraenoic acids|oxoeicosatetraenoic acid|oxo-ETEs|keto-ETEs|ketoeicosatetraenoic acid|oxoeicosatetraenoic acids|oxo-ETE chebi_ontology owl:Class CHEBI:63891 biolink:NamedThing 3-oxopristanic acid monarch-merged.owl owl:Class CHEBI:63979 biolink:NamedThing 20-oxoleukotriene B4 monarch-merged.owl owl:Class CHEBI:63981 biolink:NamedThing 6-trans-leukotriene B4 monarch-merged.owl owl:Class CHEBI:63982 biolink:NamedThing Delta(6)-trans-12-epi-leukotriene B4 monarch-merged.owl owl:Class CHEBI:63983 biolink:NamedThing eoxin A4 monarch-merged.owl owl:Class CHEBI:63992 biolink:NamedThing 15-oxolipoxin A4 monarch-merged.owl owl:Class CHEBI:63993 biolink:NamedThing 13,14-dihydro-15-oxolipoxin A4 monarch-merged.owl owl:Class CHEBI:64005 biolink:NamedThing DHET monarch-merged.owl owl:Class CHEBI:64007 biolink:NamedThing EET monarch-merged.owl owl:Class CHEBI:64008 biolink:NamedThing (8E,12Z)-10-hydroperoxy-8,12-octadecadienoic acid monarch-merged.owl owl:Class CHEBI:6498 biolink:NamedThing lipoxin A4 monarch-merged.owl owl:Class CHEBI:6499 biolink:NamedThing lipoxin B4 monarch-merged.owl owl:Class CHEBI:65101 biolink:NamedThing 2-hydroxyhexadecanoic acid monarch-merged.owl owl:Class CHEBI:65768 biolink:NamedThing (9Z,12Z,15Z)-octadeca-9,12,15-trien-6-ynoic acid monarch-merged.owl owl:Class CHEBI:70716 biolink:NamedThing cis-tetradec-5-enoic acid monarch-merged.owl owl:Class CHEBI:70850 biolink:NamedThing isoheptadecanoic acid monarch-merged.owl owl:Class CHEBI:72000 biolink:NamedThing (3E,5Z)-tetradecadienoic acid monarch-merged.owl owl:Class CHEBI:72654 biolink:NamedThing epoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:72659 biolink:NamedThing epoxyoctadecenoic acid monarch-merged.owl owl:Class CHEBI:72714 biolink:NamedThing tetracosahexaenoic acid monarch-merged.owl owl:Class CHEBI:72783 biolink:NamedThing 12-HHTrE monarch-merged.owl owl:Class CHEBI:72790 biolink:NamedThing hydroxydocosahexaenoic acid monarch-merged.owl owl:Class CHEBI:72799 biolink:NamedThing HEPE monarch-merged.owl owl:Class CHEBI:72804 biolink:NamedThing HOTrE monarch-merged.owl owl:Class CHEBI:72812 biolink:NamedThing oxooctadecadienoic acid monarch-merged.owl owl:Class CHEBI:72850 biolink:NamedThing icosadienoic acid monarch-merged.owl owl:Class CHEBI:72852 biolink:NamedThing EpETE monarch-merged.owl owl:Class CHEBI:72868 biolink:NamedThing dihydroxyicosatetraenoic acid monarch-merged.owl owl:Class CHEBI:76235 biolink:NamedThing (8Z,11Z,14Z)-heptadecatrienoic acid monarch-merged.owl owl:Class CHEBI:76318 biolink:NamedThing 22-oxodocosanoic acid monarch-merged.owl owl:Class CHEBI:76965 biolink:NamedThing 20-oxoarachidonic acid monarch-merged.owl owl:Class CHEBI:76980 biolink:NamedThing 2-hydroxybehenic acid monarch-merged.owl owl:Class CHEBI:76992 biolink:NamedThing 2-hydroxyarachidic acid monarch-merged.owl owl:Class CHEBI:77524 biolink:NamedThing hexadecadienoic acid monarch-merged.owl owl:Class CHEBI:78859 biolink:NamedThing 12(S)-HPE(5,8,10)TrE monarch-merged.owl owl:Class CHEBI:78909 biolink:NamedThing 12-HPEPE monarch-merged.owl owl:Class CHEBI:79199 biolink:NamedThing 13,14-dihydrolipoxin A4 monarch-merged.owl owl:Class CHEBI:84174 biolink:NamedThing 12-HPE(8,10,14)TrE monarch-merged.owl owl:Class CHEBI:84177 biolink:NamedThing 14-HPDHE monarch-merged.owl owl:Class CHEBI:84425 biolink:NamedThing 9-PAHSA monarch-merged.owl owl:Class CHEBI:84468 biolink:NamedThing 12-PAHSA monarch-merged.owl owl:Class CHEBI:8504 biolink:NamedThing prostanoic acid A carbocyclic fatty acid composed of heptanoic acid having a (1S,2S)-2-octylcyclopentyl substituent at position 7. monarch-merged.owl 7-[(1S,2S)-2-octylcyclopentyl]heptanoic acid|prostan-1-oic acid|Prostanoic acid 0 C20H38O2 InChI=1S/C20H38O2/c1-2-3-4-5-6-9-13-18-15-12-16-19(18)14-10-7-8-11-17-20(21)22/h18-19H,2-17H2,1H3,(H,21,22)/t18-,19-/m0/s1 WGJJROVFWIXTPA-OALUTQOASA-N 310.51452 310.28718 CCCCCCCC[C@H]1CCC[C@@H]1CCCCCCC(O)=O LIPID_MAPS_instance:LMFA03010000|PMID:6234649|KEGG:C02064|Reaxys:5744307|Beilstein:5744307 chebi_ontology owl:Class CHEBI:85057 biolink:NamedThing 2-methylhexadecanoic acid monarch-merged.owl owl:Class CHEBI:85058 biolink:NamedThing 12-methyloctadecanoic acid monarch-merged.owl owl:Class CHEBI:85148 biolink:NamedThing 3-hydroxytetradecanoic acid monarch-merged.owl owl:Class CHEBI:86506 biolink:NamedThing (9Z,12Z)-octadeca-9,12-dien-6-ynoic acid monarch-merged.owl owl:Class CHEBI:90833 biolink:NamedThing 5-hydroperoxy-15-HETE monarch-merged.owl owl:Class CHEBI:12931 biolink:NamedThing D-galactonate monarch-merged.owl owl:Class CHEBI:24148 biolink:NamedThing galactonate monarch-merged.owl 0 C6H11O7 195.148 195.05048 chebi_ontology owl:Class CHEBI:53071 biolink:NamedThing L-galactonate monarch-merged.owl owl:Class CHEBI:12936 biolink:NamedThing D-galactose monarch-merged.owl D-galactose|D-galacto-hexose|D-Gal 0 C6H12O6 180.15588 180.06339 chebi_ontology owl:Class CHEBI:17608 biolink:NamedThing D-aldohexose Any D-aldose having a chain of six carbon atoms in the molecule. monarch-merged.owl D-aldohexoses 0 C6H12O6 180.156 180.06339 CHEBI:12990|CHEBI:21038 chebi_ontology owl:Class CHEBI:16024 biolink:NamedThing D-mannose A mannose with D-configuration. monarch-merged.owl D-mannose|D-manno-hexose 0 C6H12O6 180.15588 180.06339 CHEBI:12999|CHEBI:21057 chebi_ontology owl:Class CHEBI:17393 biolink:NamedThing D-allose monarch-merged.owl owl:Class CHEBI:17634 biolink:NamedThing D-glucose A glucose with D-configuration. monarch-merged.owl D(+)-glucose|dextrose|Traubenzucker|grape sugar|D-gluco-hexose|D-(+)-glucose|D-glucose 0 C6H12O6 180.15588 180.06339 CAS:50-99-7 CHEBI:20999|CHEBI:12965 chebi_ontology owl:Class CHEBI:4208 biolink:NamedThing D-mannopyranose monarch-merged.owl owl:Class CHEBI:28260 biolink:NamedThing galactose An aldohexose that is the C-4 epimer of glucose. monarch-merged.owl Galactose|Galaktose|galacto-hexose|galactose|Gal 0 C6H12O6 180.156 180.06339 KEGG:C01582|CAS:26566-61-0|Wikipedia:Galactose CHEBI:5256|CHEBI:24162|CHEBI:33933 chebi_ontology owl:Class CHEBI:37618 biolink:NamedThing L-galactose monarch-merged.owl L-galactose|L-galacto-hexose|L-Gal 0 C6H12O6 180.156 180.06339 chebi_ontology owl:Class CHEBI:37621 biolink:NamedThing galactopyranose The pyranose form of galactose. monarch-merged.owl galactopyranose 0 C6H12O6 180.156 180.06339 chebi_ontology owl:Class CHEBI:37662 biolink:NamedThing aldehydo-galactose monarch-merged.owl rel-(2R,3S,4S,5R)-2,3,4,5,6-pentahydroxyhexanal|aldehydo-galactose 0 C6H12O6 180.156 180.06339 chebi_ontology owl:Class CHEBI:12937 biolink:NamedThing D-galactose 6-phosphate monarch-merged.owl owl:Class CHEBI:20960 biolink:NamedThing galactose phosphate monarch-merged.owl galactose phosphates|galactose phosphate chebi_ontology owl:Class CHEBI:37480 biolink:NamedThing D-galactopyranose 1-phosphate A D-galactose phosphate that consists of D-galactopyranose having a single phospho substituent located at the 1-position. It is an intermediate obtained during the the galactose metabolism. monarch-merged.owl 1-O-phosphono-D-galactopyranose|D-Galactose 1-phosphate 0 C6H13O9P InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/t2-,3+,4+,5-,6?/m1/s1 HXXFSFRBOHSIMQ-SVZMEOIVSA-N 260.13580 260.02972 OC[C@H]1OC(OP(O)(O)=O)[C@H](O)[C@@H](O)[C@H]1O PMID:4358045|Reaxys:6371662|KEGG:C03384|Beilstein:6371662|Wikipedia:Galactose_1-phosphate|CAS:2255-14-3|KNApSAcK:C00007391|PMID:17709092 CHEBI:4140|CHEBI:20957|CHEBI:59011 chebi_ontology owl:Class CHEBI:53025 biolink:NamedThing L-galactose 1-phosphate A galactose phosphate compound with undefined anomeric stereochemistry having L-configuration and the phosphate group at the 1-position. monarch-merged.owl 1-O-phosphono-L-galactopyranose|L-galactopyranose-1-(dihydrogen phosphate) 0 C6H13O9P InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/t2-,3+,4+,5-,6?/m0/s1 HXXFSFRBOHSIMQ-DHVFOXMCSA-N 260.13580 260.02972 OC[C@@H]1OC(OP(O)(O)=O)[C@@H](O)[C@H](O)[C@@H]1O PMID:15550539|PMID:19339506 chebi_ontology owl:Class CHEBI:1294 biolink:NamedThing (20R,22R)-20,22-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:1722 biolink:NamedThing 3beta-hydroxy-Delta(5)-steroid Any 3beta-hydroxy-steroid that contains a double bond between positions 5 and 6. monarch-merged.owl 3beta-hydroxy Delta(5)-steroids|a 3beta-hydroxy-Delta(5)-steroid|3beta-hydroxy-Delta(5)-steroids 0 C19H29OR 273.434 273.22184 C12C(C3C(C(CC3)*)(C)CC1)CC=C4C2(CC[C@@H](C4)O)C KEGG:C03836|MetaCyc:3b-hydroxy-D5-steroids CHEBI:20245|CHEBI:136845|CHEBI:13608 chebi_ontology owl:Class CHEBI:137053 biolink:NamedThing (24Z),26-hydroxydesmosterol monarch-merged.owl owl:Class CHEBI:137057 biolink:NamedThing cholesta-5,7-dien-3beta,25-diol monarch-merged.owl owl:Class CHEBI:137061 biolink:NamedThing cholesta-5,7-dien-3beta,24S-diol monarch-merged.owl owl:Class CHEBI:15574 biolink:NamedThing nuatigenin monarch-merged.owl owl:Class CHEBI:15577 biolink:NamedThing (3beta,24R,24'R)-fucosterol epoxide monarch-merged.owl owl:Class CHEBI:16113 biolink:NamedThing cholesterol A cholestanoid consisting of cholestane having a double bond at the 5,6-position as well as a 3beta-hydroxy group. monarch-merged.owl cholest-5-en-3beta-ol|Cholesterol|CHOLESTEROL|(3beta,14beta,17alpha)-cholest-5-en-3-ol|cholesterol|Cholest-5-en-3beta-ol|Cholesterin 0 C27H46O InChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1 HVYWMOMLDIMFJA-DPAQBDIFSA-N 386.655 386.35487 C1[C@@]2([C@]3(CC[C@]4([C@]([C@@]3(CC=C2C[C@H](C1)O)[H])(CC[C@@]4([C@H](C)CCCC(C)C)[H])[H])C)[H])C PMID:16341241|PMID:8838010|PMID:25658343|HMDB:HMDB0000067|PDBeChem:CLR|KNApSAcK:C00003648|PMID:25308664|Beilstein:2060565|PMID:11412894|KEGG:C00187|PMID:10901445|PMID:25522988|CAS:57-88-5|Gmelin:550297|KEGG:D00040|MetaCyc:CHOLESTEROL|PMID:4696527|LIPID_MAPS_instance:LMST01010001|Reaxys:2060565|Wikipedia:Cholesterol|PMID:25977713|PMID:24287311|DrugBank:DB04540|PMID:25451949 CHEBI:13982|CHEBI:3659|CHEBI:41564|CHEBI:23204 chebi_ontology owl:Class CHEBI:16581 biolink:NamedThing pregnenolone A 20-oxo steroid that is pregn-5-ene substituted by a beta-hydroxy group at position 3 and an oxo group at position 20. monarch-merged.owl 5-Pregnen-3beta-ol-20-one|Pregnenolone|(3BETA)-3-HYDROXYPREGN-5-EN-20-ONE|3beta-Hydroxypregn-5-en-20-one|pregnenolone|3beta-hydroxypregn-5-en-20-one 0 C21H32O2 InChI=1S/C21H32O2/c1-13(22)17-6-7-18-16-5-4-14-12-15(23)8-10-20(14,2)19(16)9-11-21(17,18)3/h4,15-19,23H,5-12H2,1-3H3/t15-,16-,17+,18-,19-,20-,21+/m0/s1 ORNBQBCIOKFOEO-QGVNFLHTSA-N 316.47760 316.24023 [H][C@@]12CC=C3C[C@@H](O)CC[C@]3(C)[C@@]1([H])CC[C@]1(C)[C@H](CC[C@@]21[H])C(C)=O DrugBank:DB02789|Wikipedia:Pregnenolone|HMDB:HMDB0000253|PDBeChem:PLO|KEGG:D00143|LINCS:LSM-5550|Beilstein:2059026|Reaxys:2059026|PMID:24385629|LIPID_MAPS_instance:LMST02030088|KEGG:C01953|CAS:145-13-1|PMID:23572091 CHEBI:86573|CHEBI:8388|CHEBI:26241|CHEBI:14881|CHEBI:45027 chebi_ontology owl:Class CHEBI:17500 biolink:NamedThing 7alpha-hydroxycholesterol monarch-merged.owl owl:Class CHEBI:17703 biolink:NamedThing 26-hydroxycholesterol monarch-merged.owl owl:Class CHEBI:17737 biolink:NamedThing desmosterol monarch-merged.owl owl:Class CHEBI:2710 biolink:NamedThing androst-5-ene-3beta,17beta-diol monarch-merged.owl owl:Class CHEBI:27693 biolink:NamedThing sitosterol monarch-merged.owl owl:Class CHEBI:27865 biolink:NamedThing fucosterol monarch-merged.owl owl:Class CHEBI:28750 biolink:NamedThing 17alpha-hydroxypregnenolone monarch-merged.owl owl:Class CHEBI:28824 biolink:NamedThing stigmasterol monarch-merged.owl owl:Class CHEBI:36730 biolink:NamedThing hydroxypregnenolone monarch-merged.owl owl:Class CHEBI:37623 biolink:NamedThing 7alpha,25-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:41633 biolink:NamedThing 24(S),25-epoxycholesterol monarch-merged.owl owl:Class CHEBI:50515 biolink:NamedThing 24-hydroxycholesterol monarch-merged.owl owl:Class CHEBI:50517 biolink:NamedThing 7alpha,24-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:67237 biolink:NamedThing (22R)-22-hydroxycholesterol monarch-merged.owl owl:Class CHEBI:81467 biolink:NamedThing 7alpha-hydroxypregnenolone monarch-merged.owl owl:Class CHEBI:84145 biolink:NamedThing 3beta-hydroxycholest-5-en-26-al monarch-merged.owl owl:Class CHEBI:85778 biolink:NamedThing 4beta-hydroxycholesterol monarch-merged.owl owl:Class CHEBI:86074 biolink:NamedThing (24S,25)-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:86087 biolink:NamedThing 4beta,24S-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:86113 biolink:NamedThing (25R)-4beta,26-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:86115 biolink:NamedThing (25R)-3beta,4beta-dihydroxycholest-5-en-26-al monarch-merged.owl owl:Class CHEBI:86145 biolink:NamedThing (7alpha,22R)-dihydroxycholesterol monarch-merged.owl owl:Class CHEBI:86146 biolink:NamedThing (24S,25)-epoxy-7alpha-hydroxycholesterol monarch-merged.owl owl:Class CHEBI:86165 biolink:NamedThing (24S,25S)-cholest-5-en-3beta,24,26-triol monarch-merged.owl owl:Class CHEBI:35348 biolink:NamedThing 3beta-sterol A sterol in which the hydroxy group at position 3 has beta- configuration. monarch-merged.owl 3beta-hydroxysteroids|3beta-sterols 0 C19H31OR 275.450 275.23749 C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CC[C@@H](C4)O)C CHEBI:1725|CHEBI:20248|CHEBI:13609|CHEBI:1726 chebi_ontology owl:Class CHEBI:138589 biolink:NamedThing pneumocysterol monarch-merged.owl owl:Class CHEBI:145942 biolink:NamedThing 4alpha-formyl-5alpha-cholest-7-en-3beta-ol monarch-merged.owl owl:Class CHEBI:16286 biolink:NamedThing 3beta-hydroxy-4beta-methyl-5alpha-cholest-7-ene-4alpha-carbaldehyde monarch-merged.owl owl:Class CHEBI:16290 biolink:NamedThing 5alpha-cholesta-7,24-dien-3beta-ol monarch-merged.owl owl:Class CHEBI:16455 biolink:NamedThing 4,4-dimethyl-5alpha-cholest-7-en-3beta-ol monarch-merged.owl owl:Class CHEBI:16521 biolink:NamedThing lanosterol monarch-merged.owl owl:Class CHEBI:16587 biolink:NamedThing 20-hydroxyecdysone monarch-merged.owl owl:Class CHEBI:16608 biolink:NamedThing 5alpha-cholest-8-en-3beta-ol monarch-merged.owl owl:Class CHEBI:16688 biolink:NamedThing ecdysone monarch-merged.owl owl:Class CHEBI:16933 biolink:NamedThing ergosterol monarch-merged.owl owl:Class CHEBI:17038 biolink:NamedThing fecosterol monarch-merged.owl owl:Class CHEBI:17168 biolink:NamedThing 5alpha-cholest-7-en-3beta-ol monarch-merged.owl owl:Class CHEBI:17759 biolink:NamedThing cholesta-5,7-dien-3beta-ol monarch-merged.owl 5,7-cholestadien-3-beta-ol|7-dehydrocholesterol|5,7-cholestadien-3beta-ol|cholesta-5,7-dien-3beta-ol|7-Dehydrocholesterol|Provitamin D3|(3beta)-cholesta-5,7-dien-3-ol|Cholesta-5,7-dien-3beta-ol 0 C27H44O InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9-10,18-19,21,23-25,28H,6-8,11-17H2,1-5H3/t19-,21+,23-,24+,25+,26+,27-/m1/s1 UCTLRSWJYQTBFZ-DDPQNLDTSA-N 384.63766 384.33922 [H][C@@]1(CC[C@@]2([H])C3=CC=C4C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C KNApSAcK:C00023747|Gmelin:893079|KEGG:C01164|LIPID_MAPS_instance:LMST01010069|CAS:434-16-2|Beilstein:2224615 CHEBI:3658|CHEBI:23181|CHEBI:13981 chebi_ontology owl:Class CHEBI:17791 biolink:NamedThing obtusifoliol monarch-merged.owl owl:Class CHEBI:17813 biolink:NamedThing 4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol monarch-merged.owl owl:Class CHEBI:17938 biolink:NamedThing 5alpha-ergosta-7,22-diene-3beta,5-diol monarch-merged.owl owl:Class CHEBI:18249 biolink:NamedThing ergosta-5,7,22,24(28)-tetraen-3beta-ol monarch-merged.owl owl:Class CHEBI:18252 biolink:NamedThing zymosterol monarch-merged.owl owl:Class CHEBI:18364 biolink:NamedThing 14-demethyllanosterol monarch-merged.owl owl:Class CHEBI:1949 biolink:NamedThing 4alpha-methylzymosterol monarch-merged.owl owl:Class CHEBI:27910 biolink:NamedThing 7-dehydrodesmosterol monarch-merged.owl owl:Class CHEBI:28113 biolink:NamedThing 24,25-dihydrolanosterol monarch-merged.owl owl:Class CHEBI:30109 biolink:NamedThing 4alpha-methyl-5alpha-ergosta-8,14,24(28)-trien-3beta-ol monarch-merged.owl owl:Class CHEBI:4629 biolink:NamedThing diosgenin monarch-merged.owl owl:Class CHEBI:50586 biolink:NamedThing 9xi-episterol monarch-merged.owl owl:Class CHEBI:50591 biolink:NamedThing 4beta-methylzymosterol-4alpha-carboxylic acid monarch-merged.owl owl:Class CHEBI:52615 biolink:NamedThing 4-formylzymosterol monarch-merged.owl owl:Class CHEBI:52972 biolink:NamedThing ergosta-5,7,24(28)-trien-3beta-ol monarch-merged.owl owl:Class CHEBI:63460 biolink:NamedThing parkeol monarch-merged.owl owl:Class CHEBI:66918 biolink:NamedThing ergosta-5,7-dien-3beta-ol monarch-merged.owl owl:Class CHEBI:70315 biolink:NamedThing eburicol monarch-merged.owl owl:Class CHEBI:71187 biolink:NamedThing 3beta-hydroxy-4alpha-carboxysteroid monarch-merged.owl owl:Class CHEBI:78904 biolink:NamedThing 4,4-dimethyl-8,14-cholestadien-3beta-ol monarch-merged.owl owl:Class CHEBI:86131 biolink:NamedThing 5alpha-cholesta-8,14-dien-3beta-ol monarch-merged.owl owl:Class CHEBI:87044 biolink:NamedThing 4,4-dimethyl-5alpha-cholest-8-en-3beta-ol monarch-merged.owl owl:Class CHEBI:87045 biolink:NamedThing 4alpha-hydroxymethyl-4beta-methyl-5alpha-8-cholesten-3beta-ol monarch-merged.owl owl:Class CHEBI:87051 biolink:NamedThing 4alpha-methyl-5alpha-cholest-8-en-3beta-ol monarch-merged.owl owl:Class CHEBI:87053 biolink:NamedThing 4alpha-hydroxymethyl-5alpha-cholest-8-en-3beta-ol monarch-merged.owl owl:Class CHEBI:87054 biolink:NamedThing 4alpha-formyl-5alpha-cholest-8-en-3beta-ol monarch-merged.owl owl:Class CHEBI:87277 biolink:NamedThing 3beta-hydroxy-4beta-methyl-5alpha-cholest-8-ene-4alpha-carboxylic acid monarch-merged.owl owl:Class CHEBI:87287 biolink:NamedThing 4beta-methylzymosterol-4-carbaldehyde monarch-merged.owl owl:Class CHEBI:87289 biolink:NamedThing 4alpha-hydroxymethyl-4beta-methylzymosterol monarch-merged.owl owl:Class CHEBI:87293 biolink:NamedThing 3beta-hydroxy-5alpha-cholest-8-ene-4alpha-carboxylic acid monarch-merged.owl owl:Class CHEBI:36854 biolink:NamedThing 20-hydroxy steroid Any hydroxy steroid that in which the steroid skeleton contains a hydroxy substituent at position 20. monarch-merged.owl 20-hydroxy steroids chebi_ontology owl:Class CHEBI:15690 biolink:NamedThing 20-hydroxy-3-oxopregn-4-en-21-al monarch-merged.owl owl:Class CHEBI:36726 biolink:NamedThing 17,20-dihydroxypregn-4-en-3-one A C21-steroid that is pregnane which contains a double bond between positions 4 and 5 and is substituted by an oxo group at position 3 and by hydroxy groups at the 17alpha and 20 positions. monarch-merged.owl 17,20-dihydroxypregn-4-en-3-one|17alpha,20alpha-dihydroxypregn-4-en-3-one 0 C21H32O3 InChI=1S/C21H32O3/c1-13(22)21(24)11-8-18-16-5-4-14-12-15(23)6-9-19(14,2)17(16)7-10-20(18,21)3/h12-13,16-18,22,24H,4-11H2,1-3H3/t13?,16-,17+,18+,19+,20+,21+/m1/s1 MASCESDECGBIBB-JAKCRWNRSA-N 332.47698 332.23514 [H][C@@]12CCC3=CC(=O)CC[C@]3(C)[C@@]1([H])CC[C@@]1(C)[C@@]2([H])CC[C@]1(O)C(C)O Reaxys:5083960|Beilstein:5083960 chebi_ontology owl:Class CHEBI:36728 biolink:NamedThing 20-hydroxypregn-4-en-3-one monarch-merged.owl owl:Class CHEBI:78594 biolink:NamedThing 5alpha-pregan-20beta-ol-3-one monarch-merged.owl owl:Class CHEBI:78666 biolink:NamedThing 5beta-pregnan-20alpha-ol-3-one monarch-merged.owl owl:Class CHEBI:87841 biolink:NamedThing 4-pregnen-20,21-diol-3-one monarch-merged.owl owl:Class CHEBI:36863 biolink:NamedThing 22-hydroxy steroid monarch-merged.owl owl:Class CHEBI:20710 biolink:NamedThing 3-dehydro-6-deoxoteasterone monarch-merged.owl owl:Class CHEBI:20717 biolink:NamedThing 6-deoxotyphasterol monarch-merged.owl owl:Class CHEBI:26863 biolink:NamedThing teasterone monarch-merged.owl owl:Class CHEBI:27173 biolink:NamedThing typhasterol monarch-merged.owl owl:Class CHEBI:59410 biolink:NamedThing 3-epi-6-deoxocathasterone monarch-merged.owl owl:Class CHEBI:59411 biolink:NamedThing (5alpha,22S,24R)-22-hydroxyergostan-3-one monarch-merged.owl owl:Class CHEBI:50401 biolink:NamedThing cholestanoid Any steroid based on a cholestane skeleton and its derivatives. monarch-merged.owl cholestanoids chebi_ontology owl:Class CHEBI:131643 biolink:NamedThing ketocholestane monarch-merged.owl owl:Class CHEBI:137063 biolink:NamedThing cholestanol 7alpha,8alpha-epoxide monarch-merged.owl owl:Class CHEBI:137687 biolink:NamedThing (24S)-hydroxycholestanol monarch-merged.owl owl:Class CHEBI:137688 biolink:NamedThing (25R)-26-hydroxycholestanol monarch-merged.owl owl:Class CHEBI:16175 biolink:NamedThing cholest-4-en-3-one monarch-merged.owl owl:Class CHEBI:16466 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al monarch-merged.owl owl:Class CHEBI:16577 biolink:NamedThing 3alpha,7alpha-dihydroxy-5beta-cholestan-26-oic acid monarch-merged.owl owl:Class CHEBI:167105 biolink:NamedThing cholestane conjugate monarch-merged.owl owl:Class CHEBI:17899 biolink:NamedThing 7alpha-hydroxycholest-4-en-3-one monarch-merged.owl owl:Class CHEBI:23178 biolink:NamedThing cholest-7-ene monarch-merged.owl owl:Class CHEBI:28477 biolink:NamedThing 7alpha,12alpha-dihydroxycholest-4-en-3-one monarch-merged.owl owl:Class CHEBI:48701 biolink:NamedThing 7alpha,24-dihydroxycholest-4-en-3-one monarch-merged.owl owl:Class CHEBI:50404 biolink:NamedThing lipoprotein cholesterol Cholesterol esters and free cholesterol which are contained in or bound to lipoproteins. monarch-merged.owl chebi_ontology owl:Class CHEBI:50420 biolink:NamedThing bile alcohol Members of the class of cholestanoid that include polyhydroxy derivatives of cholestane. monarch-merged.owl bile alcohols chebi_ontology owl:Class CHEBI:50593 biolink:NamedThing 3-dehydro-4-methylzymosterol monarch-merged.owl owl:Class CHEBI:63640 biolink:NamedThing 26-hydroxycholest-4-en-3-one monarch-merged.owl owl:Class CHEBI:63906 biolink:NamedThing cholest-5-en-3-one monarch-merged.owl owl:Class CHEBI:71550 biolink:NamedThing lathosterone monarch-merged.owl owl:Class CHEBI:81013 biolink:NamedThing 7alpha,25-dihydroxy-4-cholesten-3-one monarch-merged.owl owl:Class CHEBI:83746 biolink:NamedThing 3-ketocholest-4-en-26-al monarch-merged.owl owl:Class CHEBI:86570 biolink:NamedThing (5alpha)-cholestan-3beta-ol monarch-merged.owl owl:Class CHEBI:87046 biolink:NamedThing 4alpha-formyl-4beta-methyl-5alpha-8-cholesten-3beta-ol monarch-merged.owl owl:Class CHEBI:87050 biolink:NamedThing 4alpha-methyl-5alpha-cholest-8-en-3-one monarch-merged.owl owl:Class CHEBI:87056 biolink:NamedThing 5alpha-cholest-8-en-3-one monarch-merged.owl owl:Class CHEBI:87476 biolink:NamedThing (25R)-7alpha,26-dihydroxycholest-4-en-3-one monarch-merged.owl owl:Class CHEBI:53030 biolink:NamedThing oxysterol monarch-merged.owl owl:Class CHEBI:28164 biolink:NamedThing cholesterol beta-epoxide monarch-merged.owl owl:Class CHEBI:42977 biolink:NamedThing 25-hydroxycholesterol monarch-merged.owl owl:Class CHEBI:42989 biolink:NamedThing 7beta-hydroxycholesterol monarch-merged.owl owl:Class CHEBI:49305 biolink:NamedThing 5,6alpha-epoxy-5alpha-cholestan-3beta-ol monarch-merged.owl owl:Class CHEBI:12952 biolink:NamedThing aldehydo-D-galacturonate monarch-merged.owl owl:Class CHEBI:24175 biolink:NamedThing galacturonate monarch-merged.owl owl:Class CHEBI:12962 biolink:NamedThing D-glucosamine 6-phosphate monarch-merged.owl owl:Class CHEBI:24269 biolink:NamedThing glucosamine phosphate monarch-merged.owl owl:Class CHEBI:21637 biolink:NamedThing N-acyl-D-glucosamine phosphate monarch-merged.owl owl:Class CHEBI:27625 biolink:NamedThing alpha-D-glucosamine 1-phosphate monarch-merged.owl owl:Class CHEBI:139301 biolink:NamedThing N-[(3R)-12-hydroxyjasmonyl]-L-isoleucine monarch-merged.owl owl:Class CHEBI:72781 biolink:NamedThing 6-tuliposide A monarch-merged.owl owl:Class CHEBI:76962 biolink:NamedThing 20-HEPE monarch-merged.owl owl:Class CHEBI:77124 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19Z)-22-hydroxydocosahexaenoic acid monarch-merged.owl owl:Class CHEBI:134453 biolink:NamedThing 10-HETE monarch-merged.owl owl:Class CHEBI:137305 biolink:NamedThing (9Z,12Z)-11-hydroxyoctadecadienoic acid monarch-merged.owl owl:Class CHEBI:137344 biolink:NamedThing 7-HETE monarch-merged.owl owl:Class CHEBI:137345 biolink:NamedThing 13-HETE monarch-merged.owl owl:Class CHEBI:137564 biolink:NamedThing (+)-(1(10)E,4E,6S,7R)-germacradien-6-ol monarch-merged.owl owl:Class CHEBI:138101 biolink:NamedThing 2-[(9S,11R)-epidioxy-(15S)-hydroxy-(5Z,13E)-prostadienoyl]-sn-glycero-3- phosphocholine monarch-merged.owl owl:Class CHEBI:138146 biolink:NamedThing 13-hydroxy-14,15-epoxy-(5Z,8Z,11Z)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:138325 biolink:NamedThing (5S)-hydroxy-(15S)-hydroperoxy-(6E,8Z,11Z,13E)-icosatetraenoic acid monarch-merged.owl owl:Class CHEBI:138326 biolink:NamedThing (5S,6R)-dihydroxy-(15S)-hydroperoxy-(7E,9E,11Z,13E)-icosatetraenoic acid monarch-merged.owl owl:Class CHEBI:138745 biolink:NamedThing 2-[(9S,11R)-epidioxy-(15S)-hydroxy-(5Z,13E)-prostadienoyl]-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:139471 biolink:NamedThing (4S)-2,3-dehydroleucocyanidin monarch-merged.owl owl:Class CHEBI:139472 biolink:NamedThing (4S)-2,3-dehydroleucopelargonidin monarch-merged.owl owl:Class CHEBI:63655 biolink:NamedThing (3R,5R)-7-[(1S,2S,6S,8S,8aR)-6,8-dihydroxy-2-methyl-1,2,6,7,8,8a-hexahydronaphthalen-1-yl]-3,5-dihydroxyheptanoic acid monarch-merged.owl owl:Class CHEBI:63966 biolink:NamedThing (5Z,8Z,11Z)-14,15-dihydroxyicosatrienoic acid monarch-merged.owl owl:Class CHEBI:63970 biolink:NamedThing (5Z,11Z,14Z)-8,9-dihydroxyicosatrienoic acid monarch-merged.owl owl:Class CHEBI:63994 biolink:NamedThing 16-HETE monarch-merged.owl owl:Class CHEBI:72608 biolink:NamedThing (4Z,7Z,10Z,14E,16Z,19Z)-13-hydroxydocosahexaenoic acid monarch-merged.owl owl:Class CHEBI:72637 biolink:NamedThing (4Z,7Z,10Z,13Z,15E,19Z)-17-hydroxydocosahexaenoic acid monarch-merged.owl owl:Class CHEBI:72647 biolink:NamedThing 14-HDoHE monarch-merged.owl owl:Class CHEBI:23899 biolink:NamedThing icosanoid Any member of the group of signalling molecules arising from oxidation of the three C20 essential fatty acids (EFAs) icosapentaenoic acid (EPA), arachidonic acid (AA) and dihomo-gamma-linolenic acid (DGLA). monarch-merged.owl icosanoids|eicosanoids|eicosanoid|icosanoid LIPID_MAPS_class:LMFA03|PMID:16107763|PMID:19160658|PMID:2657063|Wikipedia:Eicosanoid|PMID:12697726 chebi_ontology owl:Class CHEBI:138408 biolink:NamedThing isoprostane monarch-merged.owl owl:Class CHEBI:24644 biolink:NamedThing HPETE Mono-hydroperoxy (e)icosatetraenoic acids (HPETEs) are the primary products of lipoxygenase-catalysed oxygenation of arachidonic acid. monarch-merged.owl HPETEs|Mono-hydroperoxy icosatetraenoic acids chebi_ontology owl:Class CHEBI:25029 biolink:NamedThing leukotriene Any icosanoid from that family of C20 polyunsaturated fatty acids and their derivatives generated by leukocytes from arachidonic acid, each member having four double bonds of which three are conjugated. monarch-merged.owl Leukotriene|leucotrienes|Leukotrien|leukotrienes|leukotriene|leucotriene PMID:15794321|PMID:8842590|PMID:6293196|LIPID_MAPS_class:LMFA0302|PMID:6311078|PMID:9561094|PMID:10922142|PMID:3001504|PMID:9526099|PMID:6129158 chebi_ontology owl:Class CHEBI:26347 biolink:NamedThing prostanoid The family of natural prostaglandins and prostaglandin-like compounds including prostacyclins and thromboxanes. monarch-merged.owl prostanoids|prostanoid chebi_ontology owl:Class CHEBI:61703 biolink:NamedThing nonclassic icosanoid monarch-merged.owl owl:Class CHEBI:26208 biolink:NamedThing polyunsaturated fatty acid Any fatty acid containing more than one double bond. Acids in this group are reported to have cardioprotective effects; and levels are lowered in chronic fatigue syndrome. monarch-merged.owl PUFAs|polyunsaturated fatty acids|PUFA PMID:17891522|PMID:14977874|PMID:16380690 chebi_ontology owl:Class CHEBI:132494 biolink:NamedThing fatty acid 16:2 monarch-merged.owl owl:Class CHEBI:132503 biolink:NamedThing fatty acid 18:4 monarch-merged.owl owl:Class CHEBI:132539 biolink:NamedThing fatty acid 20:4 Any polyunsaturated fatty acid containing 20 carbons and 4 double bonds. monarch-merged.owl free fatty acid 20:4|FA 20:4 0 C20H32O2 304.46690 304.24023 C(=O)(O)* chebi_ontology owl:Class CHEBI:132540 biolink:NamedThing fatty acid 20:5 monarch-merged.owl owl:Class CHEBI:132543 biolink:NamedThing fatty acid 22:5 monarch-merged.owl owl:Class CHEBI:132544 biolink:NamedThing fatty acid 22:6 Any polyunsaturated fatty acid containing 22 carbons and 6 double bonds. monarch-merged.owl FA(22:6)|free fatty acid 22:6|FA 22:6 0 C22H32O2 328.48830 328.24023 C(=O)(O)* chebi_ontology owl:Class CHEBI:139235 biolink:NamedThing (3E,5Z)-dodecadienoic acid monarch-merged.owl owl:Class CHEBI:24555 biolink:NamedThing hexadienoic acid monarch-merged.owl owl:Class CHEBI:25681 biolink:NamedThing omega-3 fatty acid A family of polyunsaturated fatty acids that have in common a final carbon-carbon double bond in the omega-3 position, i.e., the third bond from the methyl end of the fatty acid. monarch-merged.owl omega-3 fatty acids|omega-3 fatty acid|n-3 fatty acids|n-3 fatty acid PMID:24281905|PMID:24397938|PMID:21975796|PMID:24172034|PMID:19154523|PMID:24211484|PMID:23643471|PMID:24240437|PMID:24012777|PMID:24246761|PMID:15129302|Wikipedia:Omega-3_fatty_acid|PMID:24418228|PMID:19439966|PMID:24122252|PMID:16741195|PMID:15555528|PMID:24128563|PMID:15253883|PMID:24401220 chebi_ontology owl:Class CHEBI:25876 biolink:NamedThing pentadienoic acid monarch-merged.owl owl:Class CHEBI:35311 biolink:NamedThing carotenoic acid monarch-merged.owl owl:Class CHEBI:36009 biolink:NamedThing omega-6 fatty acid A family of polyunsaturated fatty acids that have in common a final carbon-carbon double bond in the n-6 position, i.e., the sixth bond from the methyl end of the fatty acid. monarch-merged.owl omega-6 fatty acid|omega-6 fatty acids PMID:19035453|PMID:19136835 chebi_ontology owl:Class CHEBI:59549 biolink:NamedThing essential fatty acid Any member of the sub-set of polyunsaturated fatty acid for which there is an absolute dietary requirement. monarch-merged.owl essentielle Fettsaeuren|EFS|EFA|EFAs|essential fatty acids|acidos grasos esenciales|acides gras indispensables PMID:19034351|PMID:1745654|PMID:7609665 chebi_ontology owl:Class CHEBI:61411 biolink:NamedThing divinyl ether fatty acid monarch-merged.owl owl:Class CHEBI:63954 biolink:NamedThing ionomycin monarch-merged.owl owl:Class CHEBI:73155 biolink:NamedThing trienoic fatty acid monarch-merged.owl owl:Class CHEBI:78862 biolink:NamedThing tetracosapentaenoic acid monarch-merged.owl owl:Class CHEBI:78863 biolink:NamedThing hexacosapentaenoic acid monarch-merged.owl owl:Class CHEBI:78864 biolink:NamedThing hexacosatetraenoic acid monarch-merged.owl owl:Class CHEBI:78866 biolink:NamedThing hexacosahexaenoic acid monarch-merged.owl owl:Class CHEBI:78867 biolink:NamedThing tetracosatetraenoic acid monarch-merged.owl owl:Class CHEBI:78868 biolink:NamedThing octacosatetraenoic acid monarch-merged.owl owl:Class CHEBI:78869 biolink:NamedThing octacosapentaenoic acid monarch-merged.owl owl:Class CHEBI:78915 biolink:NamedThing triacontatetraenoic acid monarch-merged.owl owl:Class CHEBI:78917 biolink:NamedThing triacontahexaenoic acid monarch-merged.owl owl:Class CHEBI:78918 biolink:NamedThing dotriacontatetraenoic acid monarch-merged.owl owl:Class CHEBI:78919 biolink:NamedThing dotriacontahexaenoic acid monarch-merged.owl owl:Class CHEBI:78920 biolink:NamedThing dotriacontapentaenoic acid monarch-merged.owl owl:Class CHEBI:78932 biolink:NamedThing tetratriacontapentaenoic acid monarch-merged.owl owl:Class CHEBI:78933 biolink:NamedThing tetratriacontahexaenoic acid monarch-merged.owl owl:Class CHEBI:78935 biolink:NamedThing hexatriacontatetraenoic acid monarch-merged.owl owl:Class CHEBI:78936 biolink:NamedThing hexatriacontapentaenoic acid monarch-merged.owl owl:Class CHEBI:78937 biolink:NamedThing hexatriacontahexaenoic acid monarch-merged.owl owl:Class CHEBI:78938 biolink:NamedThing octatriacontatetraenoic acid monarch-merged.owl owl:Class CHEBI:78939 biolink:NamedThing octatriacontapentaenoic acid monarch-merged.owl owl:Class CHEBI:80536 biolink:NamedThing juvenile hormone III acid monarch-merged.owl owl:Class CHEBI:87425 biolink:NamedThing juvenile hormone I acid monarch-merged.owl owl:Class CHEBI:13022 biolink:NamedThing keto-D-sorbose monarch-merged.owl owl:Class CHEBI:17317 biolink:NamedThing D-sorbose monarch-merged.owl owl:Class CHEBI:13043 biolink:NamedThing 3-amino-L-alaninate monarch-merged.owl owl:Class CHEBI:49983 biolink:NamedThing 3-aminoalaninate monarch-merged.owl owl:Class CHEBI:13086 biolink:NamedThing L-aspartate 4-semialdehyde monarch-merged.owl owl:Class CHEBI:33558 biolink:NamedThing alpha-amino-acid anion An amino-acid anion obtained by deprotonation of any alpha-amino acid. monarch-merged.owl alpha-amino acid anions|alpha-amino-acid anions|alpha-amino-acid anion chebi_ontology owl:Class CHEBI:132943 biolink:NamedThing aspartate monarch-merged.owl chebi_ontology owl:Class CHEBI:136856 biolink:NamedThing O-succinyl-L-serinate(1-) monarch-merged.owl owl:Class CHEBI:139073 biolink:NamedThing N(5)-phospho-L-glutamine(1-) monarch-merged.owl owl:Class CHEBI:14321 biolink:NamedThing glutamate(1-) An alpha-amino-acid anion that is the conjugate base of glutamic acid, having anionic carboxy groups and a cationic amino group monarch-merged.owl glutamate|glutamic acid monoanion|2-ammoniopentanedioate|hydrogen glutamate|glutamate(1-) -1 C5H8NO4 InChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/p-1 WHUUTDBJXJRKMK-UHFFFAOYSA-M 146.12136 146.04588 [NH3+]C(CCC([O-])=O)C([O-])=O Gmelin:327908 chebi_ontology owl:Class CHEBI:16594 biolink:NamedThing 2,4-diaminopentanoate monarch-merged.owl owl:Class CHEBI:17299 biolink:NamedThing 4-methylene-L-glutamate(2-) monarch-merged.owl owl:Class CHEBI:29123 biolink:NamedThing 2-acetamido-5-oxopentanoate monarch-merged.owl owl:Class CHEBI:30526 biolink:NamedThing 1-aminocyclopropanecarboxylate monarch-merged.owl owl:Class CHEBI:32439 biolink:NamedThing alaninate An alpha-amino-acid anion that is the conjugate base of alanine, arising from deprotonation of the carboxy group. monarch-merged.owl alaninate|2-aminopropanoate|alanine anion -1 C3H6NO2 InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/p-1 QNAYBMKLOCPYGJ-UHFFFAOYSA-M 88.08528 88.04040 CC(N)C([O-])=O Gmelin:101040|Beilstein:3903719 chebi_ontology owl:Class CHEBI:32456 biolink:NamedThing cysteinate(1-) A sulfur-containing amino-acid anion that is the conjugate base of cysteine, obtained by deprotonation of the carboxy group. monarch-merged.owl cysteinate(1-)|cysteine monoanion|2-amino-3-sulfanylpropanoate|cys(-)|2-amino-3-mercaptopropanoate|hydrogen cysteinate -1 C3H6NO2S InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-1 XUJNEKJLAYXESH-UHFFFAOYSA-M 120.15128 120.01247 NC(CS)C([O-])=O Beilstein:4128885|Gmelin:363235|Reaxys:4128885 chebi_ontology owl:Class CHEBI:32457 biolink:NamedThing cysteinate(2-) monarch-merged.owl 2-amino-3-sulfidopropanoate|cysteinate|cysteinate(2-)|cysteine dianion -2 C3H5NO2S InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-2 XUJNEKJLAYXESH-UHFFFAOYSA-L 119.14334 119.00520 NC(C[S-])C([O-])=O Gmelin:49990 chebi_ontology owl:Class CHEBI:32504 biolink:NamedThing phenylalaninate An aromatic amino-acid anion that is the conjugate base of phenylalanine, arising from deprotonation of the carboxy group. monarch-merged.owl phenylalanine anion|2-amino-3-phenylpropanoate|phenylalaninate -1 C9H10NO2 InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)/p-1 COLNVLDHVKWLRT-UHFFFAOYSA-M 164.18120 164.07170 NC(Cc1ccccc1)C([O-])=O Gmelin:329083 chebi_ontology owl:Class CHEBI:32508 biolink:NamedThing glycinate An alpha-amino-acid anion that is the conjugate base of glycine, arising from deprotonation of the carboxy group. monarch-merged.owl glycinate|gly(-)|aminoacetate|glycine anion|H2N-CH2-COO(-) -1 C2H4NO2 InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)/p-1 DHMQDGOQFOQNFH-UHFFFAOYSA-M 74.05870 74.02475 NCC([O-])=O Beilstein:1852023|UM-BBD_compID:c0559|Reaxys:1852023|Gmelin:81890 chebi_ontology owl:Class CHEBI:32529 biolink:NamedThing histidinate(1-) monarch-merged.owl histidinate(1-)|histidine anion|2-amino-3-(1H-imidazol-4-yl)propanoate|hydrogen histidinate -1 C6H8N3O2 InChI=1S/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11)/p-1 HNDVDQJCIGZPNO-UHFFFAOYSA-M 154.14660 154.06220 NC(Cc1c[nH]cn1)C([O-])=O Gmelin:364417|Beilstein:3959092 chebi_ontology owl:Class CHEBI:32530 biolink:NamedThing histidinate(2-) monarch-merged.owl 2-amino-3-imidazol-1-id-4-ylpropanoate|histidinate|histidinate(2-)|histidine dianion -2 C6H7N3O2 InChI=1S/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H2,8,9,10,11)/p-2 TWRZMXZXJKNOLO-UHFFFAOYSA-L 153.13880 153.05492 NC(Cc1c[n-]cn1)C([O-])=O chebi_ontology owl:Class CHEBI:32563 biolink:NamedThing lysinate An alpha-amino-acid anion that is the conjugate base of lysine, arising from deprotonation of the carboxy group. monarch-merged.owl 2,6-diaminohexanoate|lysinate(1-)|lysinate|lysine anion|lys(-) -1 C6H13N2O2 InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p-1 KDXKERNSBIXSRK-UHFFFAOYSA-M 145.17970 145.09825 NCCCCC(N)C([O-])=O Gmelin:815095 chebi_ontology owl:Class CHEBI:32612 biolink:NamedThing isoleucinate monarch-merged.owl rel-(2R,3R)-2-amino-3-methylpentanoate|ile(-)|isoleucinate|isoleucine anion Gmelin:101585 chebi_ontology owl:Class CHEBI:32627 biolink:NamedThing leucinate An alpha-amino-acid anion that is the conjugate base of leucine, arising from deprotonation of the carboxy group. monarch-merged.owl leu(-)|leucine anion|2-amino-4-methylpentanoate|leucinate -1 C6H12NO2 InChI=1S/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/p-1 ROHFNLRQFUQHCH-UHFFFAOYSA-M 130.16502 130.08735 CC(C)CC(N)C([O-])=O Reaxys:5245805 chebi_ontology owl:Class CHEBI:32644 biolink:NamedThing methioninate A sulfur-containing amino-acid anion that is the conjugate base of methionine, arising from deprotonation of the carboxy group. monarch-merged.owl methionine anion|met(-)|2-amino-4-(methylsulfanyl)butanoate|methioninate -1 C5H10NO2S InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/p-1 FFEARJCKVFRZRR-UHFFFAOYSA-M 148.20444 148.04377 CSCCC(N)C([O-])=O Gmelin:326565|Reaxys:3937270|Beilstein:3937270 chebi_ontology owl:Class CHEBI:32660 biolink:NamedThing asparaginate An alpha-amino-acid anion that is the conjugate base of asparagine, arising from deprotonation of the carboxy group. monarch-merged.owl asparagine anion|asp(-)|2,4-diamino-4-oxobutanoate|asparaginate -1 C4H7N2O3 InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/p-1 DCXYFEDJOCDNAF-UHFFFAOYSA-M 131.11006 131.04622 NC(CC(N)=O)C([O-])=O Gmelin:327370 chebi_ontology owl:Class CHEBI:32678 biolink:NamedThing glutaminate An alpha-amino-acid anion that is the conjugate base of glutamine, arising from deprotonation of the carboxy group. monarch-merged.owl glutaminate|glutamine anion|gln(-)|2,5-diamino-5-oxopentanoate -1 C5H9N2O3 InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/p-1 ZDXPYRJPNDTMRX-UHFFFAOYSA-M 145.13664 145.06187 NC(CCC(N)=O)C([O-])=O Gmelin:464703 chebi_ontology owl:Class CHEBI:32695 biolink:NamedThing argininate monarch-merged.owl arg(-)|2-amino-5-(carbamimidamido)pentanoate|arginine anion|argininate|2-amino-5-guanidinopentanoate -1 C6H13N4O2 InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p-1 ODKSFYDXXFIFQN-UHFFFAOYSA-M 173.19318 173.10440 NC(CCCNC(N)=N)C([O-])=O Gmelin:603497 chebi_ontology owl:Class CHEBI:32727 biolink:NamedThing tryptophanate An alpha-amino-acid anion that is the conjugate base of tryptophan, arising from deprotonation of the carboxy group. monarch-merged.owl trp(-)|2-amino-3-(1H-indol-3-yl)propanoate|tryptophanate|tryptophan anion -1 C11H11N2O2 InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/p-1 QIVBCDIJIAJPQS-UHFFFAOYSA-M 203.21732 203.08260 NC(Cc1c[nH]c2ccccc12)C([O-])=O Reaxys:4144998|Gmelin:331342|Beilstein:4144997 chebi_ontology owl:Class CHEBI:32752 biolink:NamedThing selenocysteinate(1-) monarch-merged.owl owl:Class CHEBI:32753 biolink:NamedThing selenocysteinate(2-) monarch-merged.owl owl:Class CHEBI:32784 biolink:NamedThing tyrosinate(1-) An alpha-amino-acid anion that is the conjugate base of tyrosine, arising from deprotonation of the carboxy group. monarch-merged.owl 2-amino-3-(4-hydroxyphenyl)propanoate|tyrosinate(1-)|hydrogen tyrosinate|tyrosine anion -1 C9H10NO3 InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/p-1 OUYCCCASQSFEME-UHFFFAOYSA-M 180.18064 180.06662 NC(Cc1ccc(O)cc1)C([O-])=O Beilstein:3548387|Gmelin:329372|Beilstein:4139515 chebi_ontology owl:Class CHEBI:32785 biolink:NamedThing tyrosinate(2-) monarch-merged.owl tyrosinate|tyrosinate(2-)|2-amino-3-(4-oxidophenyl)propanoate|tyrosine dianion -2 C9H9NO3 InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/p-2 OUYCCCASQSFEME-UHFFFAOYSA-L 179.17270 179.05934 NC(Cc1ccc([O-])cc1)C([O-])=O chebi_ontology owl:Class CHEBI:32832 biolink:NamedThing threoninate monarch-merged.owl threonine anion|threoninate|rel-(2R,3S)-2-amino-3-hydroxybutanoate 0 C4H8NO3 118.111 118.05042 chebi_ontology owl:Class CHEBI:32845 biolink:NamedThing serinate An alpha-amino-acid anion that is the conjugate base of serine. monarch-merged.owl serinate|serine anion|2-amino-3-hydroxypropanoate -1 C3H6NO3 InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/p-1 MTCFGRXMJLQNBG-UHFFFAOYSA-M 104.08468 104.03532 NC(CO)C([O-])=O Gmelin:324692 chebi_ontology owl:Class CHEBI:32859 biolink:NamedThing valinate monarch-merged.owl 2-amino-3-methylbutanoate|val(-)|valine anion|valinate -1 C5H10NO2 InChI=1S/C5H11NO2/c1-3(2)4(6)5(7)8/h3-4H,6H2,1-2H3,(H,7,8)/p-1 KZSNJWFQEVHDMF-UHFFFAOYSA-M 116.13844 116.07170 CC(C)C(N)C([O-])=O Gmelin:49876 chebi_ontology owl:Class CHEBI:32871 biolink:NamedThing prolinate An alpha-amino-acid anion that is the conjugate base of proline, arising from deprotonation of the carboxy group. monarch-merged.owl pyrrolidine-2-carboxylate|proline anion|pro(-)|prolinate -1 C5H8NO2 InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/p-1 ONIBWKKTOPOVIA-UHFFFAOYSA-M 114.12256 114.05605 [O-]C(=O)C1CCCN1 Reaxys:5387795|Gmelin:50151|Beilstein:5387795 chebi_ontology owl:Class CHEBI:32964 biolink:NamedThing ornithinate monarch-merged.owl 2,5-diaminopentanoate|ornithine anion|ornithinate -1 C5H11N2O2 InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/p-1 AHLPHDHHMVZTML-UHFFFAOYSA-M 131.15312 131.08260 NCCCC(N)C([O-])=O Gmelin:1242186 CHEBI:11448|CHEBI:19370 chebi_ontology owl:Class CHEBI:46915 biolink:NamedThing sarcosinate An alpha-amino-acid anion that is the conjugate base of sarcosine, arising from deprotonation of the carboxy group. monarch-merged.owl sarcosinate|(methylamino)acetate -1 C3H6NO2 InChI=1S/C3H7NO2/c1-4-2-3(5)6/h4H,2H2,1H3,(H,5,6)/p-1 FSYKKLYZXJSNPZ-UHFFFAOYSA-M 88.08528 88.04040 CNCC([O-])=O Gmelin:81987|Reaxys:3536300|Beilstein:3536300 chebi_ontology owl:Class CHEBI:53128 biolink:NamedThing Se-methylselenocysteinate monarch-merged.owl owl:Class CHEBI:55393 biolink:NamedThing (S)-piperazine-2-carboxylate monarch-merged.owl owl:Class CHEBI:57270 biolink:NamedThing N,N-dihydroxy-L-tyrosinate monarch-merged.owl owl:Class CHEBI:57495 biolink:NamedThing 2-aminomuconate 6-semialdehyde(1-) monarch-merged.owl owl:Class CHEBI:57506 biolink:NamedThing 3,5-diiodo-L-tyrosinate(1-) monarch-merged.owl owl:Class CHEBI:57509 biolink:NamedThing L-dopachromate monarch-merged.owl owl:Class CHEBI:57519 biolink:NamedThing alpha,beta-didehydrotryptophanate(1-) monarch-merged.owl owl:Class CHEBI:57606 biolink:NamedThing 5-oxoprolinate The conjugate base of 5-oxoproline. monarch-merged.owl 5-oxoprolinate anion|5-oxopyrrolidine-2-carboxylate|Pyroglutamate|5-oxoproline -1 C5H6NO3 InChI=1S/C5H7NO3/c7-4-2-1-3(6-4)5(8)9/h3H,1-2H2,(H,6,7)(H,8,9)/p-1 ODHCTXKNWHHXJC-UHFFFAOYSA-M 128.10600 128.03532 [O-]C(=O)C1CCC(=O)N1 Gmelin:327019|Beilstein:4135383 chebi_ontology owl:Class CHEBI:57661 biolink:NamedThing O-succinyl-L-homoserinate(1-) monarch-merged.owl owl:Class CHEBI:57662 biolink:NamedThing S-carboxylatomethyl-L-cysteine(1-) monarch-merged.owl owl:Class CHEBI:57758 biolink:NamedThing N(3)-(carboxylatoformyl)-L-2,3-diaminopropionate(1-) monarch-merged.owl owl:Class CHEBI:57773 biolink:NamedThing N-(carboxylatomethyl)-D-alanine monarch-merged.owl owl:Class CHEBI:57948 biolink:NamedThing 5-oxo-D-prolinate The conjugate base of 5-oxo-D-proline; major species at pH 7.3. monarch-merged.owl 5-oxo-D-proline|5-oxo-D-prolinate|5-oxo-D-prolinate anion|5-oxo-D-prolinate(1-)|(2R)-5-oxopyrrolidine-2-carboxylate -1 C5H6NO3 InChI=1S/C5H7NO3/c7-4-2-1-3(6-4)5(8)9/h3H,1-2H2,(H,6,7)(H,8,9)/p-1/t3-/m1/s1 ODHCTXKNWHHXJC-GSVOUGTGSA-M 128.10600 128.03532 [O-]C(=O)[C@H]1CCC(=O)N1 chebi_ontology owl:Class CHEBI:57951 biolink:NamedThing L-saccharopinate(1-) The conjugate base of L-saccharopine arising from deprotonation of all three carboxy groups and protonation of the primary and secondary amino groups; major species at pH 7.3. monarch-merged.owl L-saccharopine|(2S)-2-{[(5S)-5-azaniumyl-5-carboxylatopentyl]azaniumyl}pentanedioate|L-saccharopinate anion|L-saccharopinate -1 C11H19N2O6 InChI=1S/C11H20N2O6/c12-7(10(16)17)3-1-2-6-13-8(11(18)19)4-5-9(14)15/h7-8,13H,1-6,12H2,(H,14,15)(H,16,17)(H,18,19)/p-1/t7-,8-/m0/s1 ZDGJAHTZVHVLOT-YUMQZZPRSA-M 275.27840 275.12486 [NH3+][C@@H](CCCC[NH2+][C@@H](CCC([O-])=O)C([O-])=O)C([O-])=O MetaCyc:SACCHAROPINE chebi_ontology owl:Class CHEBI:58020 biolink:NamedThing 2-aminoacrylate monarch-merged.owl owl:Class CHEBI:58074 biolink:NamedThing D-nopalinate(1-) monarch-merged.owl owl:Class CHEBI:58077 biolink:NamedThing bis-gamma-glutamylcystinate(2-) monarch-merged.owl owl:Class CHEBI:58158 biolink:NamedThing aminomalonate(1-) monarch-merged.owl owl:Class CHEBI:58227 biolink:NamedThing 5-(L-alanin-3-yl)-2-hydroxy-cis,cis-muconate 6-semialdehyde(1-) monarch-merged.owl owl:Class CHEBI:58244 biolink:NamedThing nocardicin A(1-) monarch-merged.owl owl:Class CHEBI:58572 biolink:NamedThing N-[(5S)-5-ammonio-5-carboxylatopentanoyl]-L-cysteinyl-D-valinate monarch-merged.owl owl:Class CHEBI:58670 biolink:NamedThing 4-oxoprolinate monarch-merged.owl owl:Class CHEBI:58672 biolink:NamedThing L-2-aminoadipate(1-) monarch-merged.owl owl:Class CHEBI:58718 biolink:NamedThing S-substituted N-acetyl-L-cysteinate monarch-merged.owl owl:Class CHEBI:58724 biolink:NamedThing threo-3-methyl-L-aspartate(1-) monarch-merged.owl owl:Class CHEBI:58733 biolink:NamedThing 4-methylene-L-glutamate(1-) monarch-merged.owl owl:Class CHEBI:58739 biolink:NamedThing 2-aminobut-2-enoate monarch-merged.owl owl:Class CHEBI:58748 biolink:NamedThing N-iminiumylmethyl-L-aspartate monarch-merged.owl owl:Class CHEBI:58758 biolink:NamedThing S-(hydroxymethyl)glutathione(1-) monarch-merged.owl owl:Class CHEBI:58782 biolink:NamedThing D-dopachrome(1-) monarch-merged.owl owl:Class CHEBI:58799 biolink:NamedThing (2S)-2-{[(1R)-1-carboxylatoethyl]azaniumyl}pentanoate monarch-merged.owl owl:Class CHEBI:58800 biolink:NamedThing 4-(L-gamma-glutamylamino)butanoate monarch-merged.owl owl:Class CHEBI:58825 biolink:NamedThing (R)-beta-alanopine(1-) monarch-merged.owl owl:Class CHEBI:58905 biolink:NamedThing S-sulfanylglutathionate(1-) monarch-merged.owl owl:Class CHEBI:58928 biolink:NamedThing N-formimidoyl-L-glutamate(1-) monarch-merged.owl owl:Class CHEBI:59258 biolink:NamedThing N-hydroxy-alpha-amino-acid anion monarch-merged.owl owl:Class CHEBI:59814 biolink:NamedThing L-alpha-amino acid anion Conjugate base of an L-alpha-amino acid arising from deprotonation of the C-1 carboxy group. monarch-merged.owl L-alpha-amino carboxylate -1 C2H3NO2R 73.051 73.01638 [C@H](C(=O)[O-])(N)* chebi_ontology owl:Class CHEBI:60058 biolink:NamedThing S-acylglutathionate(1-) monarch-merged.owl owl:Class CHEBI:60895 biolink:NamedThing D-alpha-amino acid anion Any alpha-amino acid anion in which the parent amino acid has D-configuration. monarch-merged.owl D-alpha-amino acid anions|D-alpha-amino carboxylate -1 C2H3NO2R 73.051 73.01638 [C@@H](C(=O)[O-])(N)* chebi_ontology owl:Class CHEBI:61085 biolink:NamedThing 3-sulfino-L-alanine(1-) monarch-merged.owl owl:Class CHEBI:62225 biolink:NamedThing S-sulfo-L-cysteinate(1-) monarch-merged.owl owl:Class CHEBI:62936 biolink:NamedThing homomethioninate monarch-merged.owl owl:Class CHEBI:62978 biolink:NamedThing 4-hydroxyprolinate The alpha-amino-acid anion formed by loss of a proton from the carboxy group of 4-hydroxyproline. monarch-merged.owl hydroxyproline anion|4-hydroxyproline anion|hydroxyprolinate|4-hydroxypyrrolidine-2-carboxylate -1 C5H8NO3 InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/p-1 PMMYEEVYMWASQN-UHFFFAOYSA-M 130.12190 130.05097 OC1CNC(C1)C([O-])=O chebi_ontology owl:Class CHEBI:62979 biolink:NamedThing 5-hydroxylysinate monarch-merged.owl owl:Class CHEBI:62980 biolink:NamedThing homoserinate An alpha-amino-acid anion resulting from the removal of a proton from the carboxy group of homoserine. monarch-merged.owl homoserine anion|homoserine(1-)|2-amino-4-hydroxybutanoate|2-amino-4-hydroxybutyrate -1 C4H8NO3 InChI=1S/C4H9NO3/c5-3(1-2-6)4(7)8/h3,6H,1-2,5H2,(H,7,8)/p-1 UKAUYVFTDYCKQA-UHFFFAOYSA-M 118.11120 118.05097 NC(CCO)C([O-])=O chebi_ontology owl:Class CHEBI:63477 biolink:NamedThing iodothyroninate An iodothyronine whose alpha carboxylic acid group of the tyrosine is ionized (not protonated). monarch-merged.owl iodothyroninates chebi_ontology owl:Class CHEBI:66922 biolink:NamedThing citrullinate An alpha-amino acid anion that is the conjugate base of citrulline, obtained by deprotonation of the carboxy group. monarch-merged.owl 2-amino-5-(carbamoylamino)pentanoate -1 C6H12N3O3 InChI=1S/C6H13N3O3/c7-4(5(10)11)2-1-3-9-6(8)12/h4H,1-3,7H2,(H,10,11)(H3,8,9,12)/p-1 RHGKLRLOHDJJDR-UHFFFAOYSA-M 174.17780 174.08841 NC(CCCNC(N)=O)C([O-])=O chebi_ontology owl:Class CHEBI:66952 biolink:NamedThing homocysteinate An alpha-amino acid anion that is the conjugate base of homocysteine, obtained by deprotonation of the carboxy group. monarch-merged.owl 2-amino-4-sulfanylbutanoate -1 C4H8NO2S InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7)/p-1 FFFHZYDWPBMWHY-UHFFFAOYSA-M 134.17700 134.02812 NC(CCS)C([O-])=O chebi_ontology owl:Class CHEBI:67008 biolink:NamedThing kynureninate monarch-merged.owl owl:Class CHEBI:71192 biolink:NamedThing N-(cyanomethyl)glycinate monarch-merged.owl owl:Class CHEBI:73620 biolink:NamedThing 3-methylthioaspartate(1-) monarch-merged.owl owl:Class CHEBI:73962 biolink:NamedThing (5S)-5-(carboxymethyl)-L-proline(1-) monarch-merged.owl owl:Class CHEBI:77612 biolink:NamedThing cis,cis-2-ammonio-3-(3-oxoprop-1-enyl)but-2-enedioate(1-) monarch-merged.owl owl:Class CHEBI:84330 biolink:NamedThing N(3)-fumaroyl-(S)-2,3-diaminopropanoate monarch-merged.owl owl:Class CHEBI:86508 biolink:NamedThing alpha-aminobutyrate An alpha-amino-acid anion that is the conjugate base of alpha-aminobutyric acid. monarch-merged.owl 2-aminobutanoate -1 C4H8NO2 InChI=1S/C4H9NO2/c1-2-3(5)4(6)7/h3H,2,5H2,1H3,(H,6,7)/p-1 QWCKQJZIFLGMSD-UHFFFAOYSA-M 102.11240 102.05605 CCC(N)C([O-])=O PMID:24023812 chebi_ontology owl:Class CHEBI:13115 biolink:NamedThing L-gulonate monarch-merged.owl owl:Class CHEBI:24461 biolink:NamedThing gulonate monarch-merged.owl owl:Class CHEBI:131170 biolink:NamedThing (3S)-3-amino-4-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S,3S)-1-[[(2S)-1-[(2S)-2-[[[(1S)-1-carboxy-2-phenylethyl]amino]-oxomethyl]-1-pyrrolidinyl]-3-(1H-imidazol-5-yl)-1-oxopropan-2-yl]amino]-3-methyl-1-oxopentan-2-yl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-4-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:16670 biolink:NamedThing peptide Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc. monarch-merged.owl Peptide|peptidos|peptido|peptides|Peptid 0 (C2H2NOR)nC2H3NOR KEGG:C00012 CHEBI:7990|CHEBI:25906|CHEBI:14753 chebi_ontology owl:Class CHEBI:23449 biolink:NamedThing cyclic peptide monarch-merged.owl Cyclopeptid|peptide cyclique|peptido ciclico|Zyklopeptid|cyclic peptides chebi_ontology owl:Class CHEBI:23643 biolink:NamedThing depsipeptide monarch-merged.owl owl:Class CHEBI:24396 biolink:NamedThing glycopeptide Any carbohydrate derivative that consists of glycan moieties covalently attached to the side chains of the amino acid residues that constitute the peptide. monarch-merged.owl glycopeptides CHEBI:5478|CHEBI:24395 chebi_ontology owl:Class CHEBI:25676 biolink:NamedThing oligopeptide A peptide containing a relatively small number of amino acids. monarch-merged.owl Oligopeptid|oligopeptido|oligopeptides Wikipedia:Oligopeptide CHEBI:7755 chebi_ontology owl:Class CHEBI:25903 biolink:NamedThing peptide antibiotic monarch-merged.owl owl:Class CHEBI:25905 biolink:NamedThing peptide hormone Any peptide with hormonal activity in animals, whether endocrine, neuroendocrine, or paracrine. monarch-merged.owl polypeptide hormone|peptide hormones chebi_ontology owl:Class CHEBI:35256 biolink:NamedThing nucleotide-glycopeptide monarch-merged.owl owl:Class CHEBI:38579 biolink:NamedThing peptide pheromone monarch-merged.owl owl:Class CHEBI:5054 biolink:NamedThing Fibrin monarch-merged.owl Fibrin 0 C5H11N3O2 InChI=1S/C5H11N3O2/c1-7-5(10)3-8-4(9)2-6/h2-3,6H2,1H3,(H,7,10)(H,8,9) BWGVNKXGVNDBDI-UHFFFAOYSA-N 145.160 145.08513 CNC(=O)CNC(=O)CN KEGG:C00290|CAS:9001-31-4 chebi_ontology owl:Class CHEBI:60836 biolink:NamedThing phytochelatin monarch-merged.owl owl:Class CHEBI:6618 biolink:NamedThing MET-enkephalin monarch-merged.owl owl:Class PR:000000001 biolink:NamedThing protein An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA, and any derivatives thereof.|An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA. monarch-merged.owl native protein|natural protein The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB]. protein owl:Class CHEBI:131198 biolink:NamedThing (Z)-1,2-ethenediol monarch-merged.owl owl:Class CHEBI:23824 biolink:NamedThing diol A compound that contains two hydroxy groups, generally assumed to be, but not necessarily, alcoholic. Aliphatic diols are also called glycols. monarch-merged.owl diols Wikipedia:Diol chebi_ontology owl:Class CHEBI:134509 biolink:NamedThing 13,14-dihydro-15-keto-PGF1alpha monarch-merged.owl owl:Class CHEBI:13643 biolink:NamedThing glycol A diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent. monarch-merged.owl glycols|Glykol chebi_ontology owl:Class CHEBI:139515 biolink:NamedThing flavuxanthin monarch-merged.owl owl:Class CHEBI:15372 biolink:NamedThing 5,6,7,8-tetrahydrobiopterin monarch-merged.owl 5,6,7,8-Tetrahydrobiopterin|2-amino-6-(1,2-dihydroxypropyl)-5,6,7,8-tetrahydropteridin-4(3H)-one|2-Amino-6-(1,2-dihydroxypropyl)-5,6,7,8-tetrahydoro-4(1H)-pteridinone|BH4|Tetrahydrobiopterin|5,6,7,8-tetrahydrobiopterin|5,6,7,8-TETRAHYDROBIOPTERIN owl:Class CHEBI:16843 biolink:NamedThing cis-1,2-dihydro-3-ethylcatechol monarch-merged.owl owl:Class CHEBI:17933 biolink:NamedThing calcidiol A hydroxycalciol that is calciol in which the hydrogen at position 25 has been replaced by a hydroxy group. A prehormone resulting from the oxidation of calciol in the liver, it is further hydroxylated in the kidney to give calcitriol, the active form of vitamin D3. monarch-merged.owl 25-Hydroxyvitamin D3|25-hydroxycholecalciferol|(5Z,7E)-(3S)-9,10-secocholesta-5,7,10(19)-triene-3,25-diol|calcifediol|Calcifediol anhydrous|calcidiol|25-hydroxyvitamin D3|Calcifediol|Rayaldee|(3S,5Z,7E)-9,10-secocholesta-5,7,10(19)-triene-3,25-diol|25(OH)D3|calcifediolum|3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL|(3S,5Z,7E)-9,10-secocholesta-5,7,10-triene-3,25-diol|Calcidiol|(3beta,5Z,7E)-9,10-secocholesta-5,7,10(19)-triene-3,25-diol 0 C27H44O2 InChI=1S/C27H44O2/c1-19-10-13-23(28)18-22(19)12-11-21-9-7-17-27(5)24(14-15-25(21)27)20(2)8-6-16-26(3,4)29/h11-12,20,23-25,28-29H,1,6-10,13-18H2,2-5H3/b21-11+,22-12-/t20-,23+,24-,25+,27-/m1/s1 JWUBBDSIWDLEOM-DTOXIADCSA-N 400.63706 400.33413 [H][C@@]1(CC[C@]2([H])[C@]1(C)CCC\C2=C/C=C1/C[C@@H](O)CCC1=C)[C@H](C)CCCC(C)(C)O PMID:9080330|PMID:23566108|PMID:16549446|Wikipedia:Calcifediol|LIPID_MAPS_instance:LMST03020246|CAS:19356-17-3|Drug_Central:464|DrugBank:DB00146|PMID:22487892|PMID:22536761|PDBeChem:VDY|Beilstein:4270041|PMID:23090338|Reaxys:4270041|KEGG:C01561|PMID:18689406 CHEBI:19815|CHEBI:46387|CHEBI:13931|CHEBI:3304 chebi_ontology owl:Class CHEBI:22501 biolink:NamedThing aminodiol An amino alcohol having two hydroxy functional groups. monarch-merged.owl aminodiols|amino diol|amino diols chebi_ontology owl:Class CHEBI:22944 biolink:NamedThing butanediols monarch-merged.owl owl:Class CHEBI:22970 biolink:NamedThing butynediol monarch-merged.owl owl:Class CHEBI:23976 biolink:NamedThing ethanediol Any diol that is ethane or substituted ethane carrying two hydroxy groups. monarch-merged.owl ethanediols owl:Class CHEBI:24567 biolink:NamedThing cyclohexane-1,2-diol monarch-merged.owl owl:Class CHEBI:25636 biolink:NamedThing octadienediol monarch-merged.owl owl:Class CHEBI:31186 biolink:NamedThing alfacalcidol monarch-merged.owl owl:Class CHEBI:64235 biolink:NamedThing (6E)-8-hydroxygeraniol monarch-merged.owl owl:Class CHEBI:86963 biolink:NamedThing veratrylglycerol beta-guaiacyl ether monarch-merged.owl owl:Class CHEBI:90983 biolink:NamedThing (20S)-hydroxyvitamin D3 monarch-merged.owl owl:Class CHEBI:131367 biolink:NamedThing 3-hydroxy-3-butenoic acid monarch-merged.owl owl:Class CHEBI:133872 biolink:NamedThing (2Z,4E)-4-hydroxy-6-oxoocta-2,4-dienedioic acid monarch-merged.owl owl:Class CHEBI:16321 biolink:NamedThing 4-carboxy-2-hydroxyhexa-2,4-dienedioic acid monarch-merged.owl owl:Class CHEBI:17037 biolink:NamedThing geissoschizine monarch-merged.owl owl:Class CHEBI:67273 biolink:NamedThing monohydroxy-1,4-benzoquinones Any 1,4-benzoquinone carrying a single hydroxy substituent. monarch-merged.owl 2-hydroxy-1,4-benzoquinones|hydroxybenzoquinones|monohydroxybenzoquinones|hydroxybenzoquinone|hydroxy-1,4-benzoquinones|hydroxy-1,4-benzoquinone 0 C6HO3R3 121.07030 120.99257 OC1=C([*])C(=O)C([*])=C([*])C1=O chebi_ontology owl:Class CHEBI:71648 biolink:NamedThing hydroxybenzoquinone Benzoquinones with at least one hydroxy substituent. monarch-merged.owl hydroxybenzoquinones chebi_ontology owl:Class CHEBI:77922 biolink:NamedThing isopentenol monarch-merged.owl owl:Class CHEBI:87771 biolink:NamedThing (2Z,4Z)-2-hydroxyhepta-2,4-dienedioic acid monarch-merged.owl owl:Class CHEBI:1549 biolink:NamedThing 3-hydroxymonocarboxylic acid monarch-merged.owl owl:Class CHEBI:131401 biolink:NamedThing hexopyranosyl hexopyranoside monarch-merged.owl owl:Class CHEBI:24407 biolink:NamedThing glycosyl glycoside monarch-merged.owl owl:Class CHEBI:16751 biolink:NamedThing inulobiose monarch-merged.owl owl:Class CHEBI:17429 biolink:NamedThing 3-ketosucrose monarch-merged.owl owl:Class CHEBI:17992 biolink:NamedThing sucrose monarch-merged.owl owl:Class CHEBI:51833 biolink:NamedThing beta-D-fructofuranosyl alpha-D-mannopyranoside monarch-merged.owl owl:Class CHEBI:79284 biolink:NamedThing trehalulose monarch-merged.owl owl:Class CHEBI:22823 biolink:NamedThing beta-alanine derivative monarch-merged.owl owl:Class CHEBI:16682 biolink:NamedThing N-acetyl-beta-alanine monarch-merged.owl owl:Class CHEBI:18261 biolink:NamedThing N-carbamoyl-beta-alanine monarch-merged.owl owl:Class CHEBI:18323 biolink:NamedThing anserine monarch-merged.owl owl:Class CHEBI:25848 biolink:NamedThing pantothenic acids monarch-merged.owl owl:Class CHEBI:43991 biolink:NamedThing malonamic acid monarch-merged.owl owl:Class CHEBI:29347 biolink:NamedThing monocarboxylic acid amide A carboxamide derived from a monocarboxylic acid. monarch-merged.owl monocarboxylic acid amides 0 CNOR3 42.01680 41.99799 [*]N([*])C([*])=O CHEBI:6977|CHEBI:13211|CHEBI:22207|CHEBI:25383 chebi_ontology owl:Class CHEBI:132474 biolink:NamedThing fatty acid-taurine conjugate monarch-merged.owl owl:Class CHEBI:16459 biolink:NamedThing pentanamide monarch-merged.owl owl:Class CHEBI:16562 biolink:NamedThing 2-phenylacetamide monarch-merged.owl owl:Class CHEBI:16615 biolink:NamedThing biotin amide monarch-merged.owl owl:Class CHEBI:17460 biolink:NamedThing lipoamide monarch-merged.owl owl:Class CHEBI:17694 biolink:NamedThing dihydrolipoamide monarch-merged.owl owl:Class CHEBI:2030 biolink:NamedThing 5-aminoimidazole-4-carboxamide monarch-merged.owl owl:Class CHEBI:22645 biolink:NamedThing arenecarboxamide monarch-merged.owl owl:Class CHEBI:23750 biolink:NamedThing S-substituted dihydrolipoamide monarch-merged.owl owl:Class CHEBI:25333 biolink:NamedThing pretetramide monarch-merged.owl owl:Class CHEBI:26556 biolink:NamedThing 1-ribosylimidazolecarboxamide monarch-merged.owl owl:Class CHEBI:27690 biolink:NamedThing acetazolamide monarch-merged.owl Glaupax|N-[5-(aminosulfonyl)-1,3,4-thiadiazol-2-yl]acetamide|2-acetylamino-1,3,4-thiadiazole-5-sulfonamide|Diacarb|N-(5-sulfamoyl-1,3,4-thiadiazol-2-yl)acetamide|Diamox|acetazolamida|acetazolamide|5-acetylamino-1,3,4-thiadiazole-2-sulfonamide|5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE|acetazolamidum|Diluran|N-[5-(aminosulfonyl)-1,3,5-thiadiazol-2-yl]acetamide|Acetazolamide|Defiltran owl:Class CHEBI:30322 biolink:NamedThing 3-acetamidopropanal monarch-merged.owl owl:Class CHEBI:36259 biolink:NamedThing taurolithocholic acid monarch-merged.owl owl:Class CHEBI:45285 biolink:NamedThing pyrazinecarboxamide monarch-merged.owl owl:Class CHEBI:46770 biolink:NamedThing pyrrolidinecarboxamide monarch-merged.owl owl:Class CHEBI:48470 biolink:NamedThing amidobenzoic acid monarch-merged.owl owl:Class CHEBI:48592 biolink:NamedThing piperidinecarboxamide monarch-merged.owl owl:Class CHEBI:49255 biolink:NamedThing N-(6-aminohexanoyl)-6-aminohexanoic acid monarch-merged.owl owl:Class CHEBI:51051 biolink:NamedThing N-(3-acetamidopropyl)-4-aminobutanal monarch-merged.owl owl:Class CHEBI:61232 biolink:NamedThing N-acylphosphatidylethanolamine monarch-merged.owl owl:Class CHEBI:63580 biolink:NamedThing ribavirin monarch-merged.owl owl:Class CHEBI:6472 biolink:NamedThing lincomycin monarch-merged.owl owl:Class CHEBI:69403 biolink:NamedThing carbonarone A monarch-merged.owl owl:Class CHEBI:72564 biolink:NamedThing temozolomide monarch-merged.owl owl:Class CHEBI:7386 biolink:NamedThing 4-acetamidobutanal monarch-merged.owl owl:Class CHEBI:85174 biolink:NamedThing prostaglandin D2 ethanolamide monarch-merged.owl owl:Class CHEBI:85175 biolink:NamedThing 11beta-prostaglandin F2alpha ethanolamide monarch-merged.owl owl:Class CHEBI:131436 biolink:NamedThing N-acetyl-L-phosphinothricin monarch-merged.owl owl:Class CHEBI:16259 biolink:NamedThing N-acetyl-L-phenylalanine monarch-merged.owl owl:Class CHEBI:16437 biolink:NamedThing N-acetyl-L-histidine monarch-merged.owl owl:Class CHEBI:17374 biolink:NamedThing N(6)-acetyl-N(6)-hydroxy-L-lysine monarch-merged.owl owl:Class CHEBI:17533 biolink:NamedThing N-acetyl-L-glutamic acid monarch-merged.owl owl:Class CHEBI:17786 biolink:NamedThing N-acetyl-L-leucine monarch-merged.owl owl:Class CHEBI:21547 biolink:NamedThing N-acetyl-L-aspartic acid monarch-merged.owl owl:Class CHEBI:21557 biolink:NamedThing N-acetyl-L-methionine monarch-merged.owl owl:Class CHEBI:21565 biolink:NamedThing N-acetyl-L-valine monarch-merged.owl owl:Class CHEBI:22193 biolink:NamedThing acetyl-L-lysine monarch-merged.owl owl:Class CHEBI:28939 biolink:NamedThing N-acetyl-L-cysteine monarch-merged.owl owl:Class CHEBI:40992 biolink:NamedThing N-acetyl-L-alanine monarch-merged.owl owl:Class CHEBI:45441 biolink:NamedThing N-acetyl-L-serine monarch-merged.owl owl:Class CHEBI:49002 biolink:NamedThing N-acetyl-L-citrulline monarch-merged.owl owl:Class CHEBI:61515 biolink:NamedThing N-acetyl-L-2-aminoadipic acid semialdehyde monarch-merged.owl owl:Class CHEBI:74640 biolink:NamedThing N-acetyl-L-tryptophan monarch-merged.owl owl:Class CHEBI:77583 biolink:NamedThing (2S)-2-acetamido-4-aminobutanoic acid monarch-merged.owl owl:Class CHEBI:86496 biolink:NamedThing acetyl-L-ornithine monarch-merged.owl owl:Class CHEBI:88135 biolink:NamedThing N-acetylmethionine sulfone monarch-merged.owl owl:Class CHEBI:88136 biolink:NamedThing N-acetyl-L-methionine sulfoximine monarch-merged.owl owl:Class CHEBI:131445 biolink:NamedThing 4-methylpentanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:134414 biolink:NamedThing 2-hydroxyhexacosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:137040 biolink:NamedThing short chain fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138261 biolink:NamedThing very long-chain fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138290 biolink:NamedThing 2-hydroxyoctanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138292 biolink:NamedThing 2-hydroxydecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138296 biolink:NamedThing 2-hydroxyisovaleryl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138297 biolink:NamedThing 2-hydroxyheptadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138298 biolink:NamedThing 2-hydroxyicosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138299 biolink:NamedThing 2-hydroxydodecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138300 biolink:NamedThing 2-hydroxytetradecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138398 biolink:NamedThing (15Z)-12-oxophyto-10,15-dienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138431 biolink:NamedThing (9S,13S)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138433 biolink:NamedThing (9S,13S)-1a,1b-dinor-12-oxo-10,15-phytodienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:157669 biolink:NamedThing carbocyclic fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:157766 biolink:NamedThing 2-hydroxy-fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57347 biolink:NamedThing 3-oxo-fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58784 biolink:NamedThing 2-hydroxy-3-methylhexadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62558 biolink:NamedThing (S)-3-hydroxylauroyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:65102 biolink:NamedThing 3-hydroxy fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:68458 biolink:NamedThing multi-methyl-branched fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74117 biolink:NamedThing 2-hydroxybehenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74118 biolink:NamedThing 2-hydroxytetracosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74215 biolink:NamedThing 2-hydroxytetracosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77332 biolink:NamedThing saturated fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77632 biolink:NamedThing unsaturated fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83139 biolink:NamedThing long-chain fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83968 biolink:NamedThing 3-methyl fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84204 biolink:NamedThing omega-hydroxy fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84948 biolink:NamedThing 11,12-saturated fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87119 biolink:NamedThing (R)-2-hydroxy-4-methylpentanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87474 biolink:NamedThing (R)-2-hydroxybutanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:88148 biolink:NamedThing 2,3-saturated fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:90156 biolink:NamedThing 2-methylhexanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:90546 biolink:NamedThing medium-chain fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:131446 biolink:NamedThing 2-aminobenzoylacetate monarch-merged.owl owl:Class CHEBI:35973 biolink:NamedThing 3-oxo monocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:140233 biolink:NamedThing 4'-O-demethylsordarin(1-) monarch-merged.owl owl:Class CHEBI:16944 biolink:NamedThing L-2-amino-3-oxobutanoate monarch-merged.owl owl:Class CHEBI:17982 biolink:NamedThing 6-acetamido-3-oxohexanoate monarch-merged.owl owl:Class CHEBI:19680 biolink:NamedThing 2-methylacetoacetate monarch-merged.owl owl:Class CHEBI:33190 biolink:NamedThing 3-oxopropanoate monarch-merged.owl owl:Class CHEBI:57700 biolink:NamedThing 2-methyl-3-oxopropanoate monarch-merged.owl owl:Class CHEBI:58034 biolink:NamedThing flavonol 3-O-(6-O-malonyl-beta-D-glucoside)(1-) monarch-merged.owl owl:Class CHEBI:58577 biolink:NamedThing biochanin A 7-O-beta-D-glucoside 6''-O-malonate monarch-merged.owl owl:Class CHEBI:58671 biolink:NamedThing L-3-oxoalaninate monarch-merged.owl owl:Class CHEBI:58775 biolink:NamedThing 3-oxo-3-ureidopropanoate monarch-merged.owl owl:Class CHEBI:77876 biolink:NamedThing biochanin A 7-O-beta-D-glucoside 6''-O-malonate(2-) monarch-merged.owl owl:Class CHEBI:131447 biolink:NamedThing 2-aminobenzoylacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58342 biolink:NamedThing acyl-CoA(4-) An acyl-CoA oxoanion arising from deprotonation of the phosphate and diphosphate OH groups of any acyl-CoA; major species at pH 7.3. monarch-merged.owl an acyl-CoA -4 C22H31N7O17P3SR 790.50500 790.07100 CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O chebi_ontology owl:Class CHEBI:131622 biolink:NamedThing steroidal acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:131780 biolink:NamedThing 2-hydroxyisobutanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138328 biolink:NamedThing L-firefly luciferyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:140639 biolink:NamedThing dihydro-4-coumaroyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:143532 biolink:NamedThing prostaglandin F2alpha-CoA(4-) monarch-merged.owl prostaglandin F2alpha-CoA -4 C41H64N7O20P3S InChI=1S/C41H68N7O20P3S/c1-4-5-8-11-25(49)14-15-27-26(28(50)20-29(27)51)12-9-6-7-10-13-32(53)72-19-18-43-31(52)16-17-44-39(56)36(55)41(2,3)22-65-71(62,63)68-70(60,61)64-21-30-35(67-69(57,58)59)34(54)40(66-30)48-24-47-33-37(42)45-23-46-38(33)48/h6,9,14-15,23-30,34-36,40,49-51,54-55H,4-5,7-8,10-13,16-22H2,1-3H3,(H,43,52)(H,44,56)(H,60,61)(H,62,63)(H2,42,45,46)(H2,57,58,59)/p-4/b9-6-,15-14+/t25-,26+,27+,28-,29+,30+,34+,35+,36-,40+/m0/s1 SQSDFKGORGQPEL-XIAPILJESA-J 1099.980 1099.31616 [C@@H]1(N2C3=C(C(=NC=N3)N)N=C2)O[C@H](COP(OP(OCC([C@H](C(NCCC(NCCSC(=O)CCC/C=C\C[C@@H]4[C@@H](/C=C/[C@@H](O)CCCCC)[C@@H](C[C@@H]4O)O)=O)=O)O)(C)C)(=O)[O-])(=O)[O-])[C@H]([C@H]1O)OP([O-])([O-])=O PMID:11673457 chebi_ontology owl:Class CHEBI:57252 biolink:NamedThing (E)-cinnamoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57254 biolink:NamedThing (R)-phenyllactoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57260 biolink:NamedThing 2-methylbut-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57271 biolink:NamedThing indol-3-ylacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57276 biolink:NamedThing feruloyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57288 biolink:NamedThing acetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57311 biolink:NamedThing (1-hydroxycyclohexyl)acetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57312 biolink:NamedThing (2S,3S)-3-hydroxy-2-methylbutanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57313 biolink:NamedThing (2R)-2-methylacyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57314 biolink:NamedThing (2S)-2-methylacyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57324 biolink:NamedThing cinnamoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57325 biolink:NamedThing (E,E)-piperonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57329 biolink:NamedThing 2,4-dichlorobenzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57331 biolink:NamedThing anthraniloyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57332 biolink:NamedThing crotonoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57333 biolink:NamedThing 2-furoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57335 biolink:NamedThing 2-methylacetoacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57336 biolink:NamedThing 2-methylbutanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57338 biolink:NamedThing isobutyryl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57340 biolink:NamedThing 3-hydroxy-2-methylpropanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57342 biolink:NamedThing 3-hydroxybenzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57344 biolink:NamedThing 3-methylbut-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57345 biolink:NamedThing isovaleryl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57354 biolink:NamedThing 4-chlorobenzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57355 biolink:NamedThing 4-coumaroyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57356 biolink:NamedThing 4-hydroxybenzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57357 biolink:NamedThing 5-hydroxypentanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57361 biolink:NamedThing 6-hydroxycyclohex-1-ene-1-carbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57367 biolink:NamedThing acryloyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57369 biolink:NamedThing benzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57370 biolink:NamedThing biotinyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57371 biolink:NamedThing butyryl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57372 biolink:NamedThing caffeoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57374 biolink:NamedThing cyclohexa-1,5-diene-1-carbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57376 biolink:NamedThing formyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57377 biolink:NamedThing cis-geranoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57382 biolink:NamedThing lactoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57389 biolink:NamedThing pentanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57390 biolink:NamedThing phenylacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57392 biolink:NamedThing propionyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57393 biolink:NamedThing sinapoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57395 biolink:NamedThing thiophene-2-carbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57396 biolink:NamedThing vinylacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58004 biolink:NamedThing 3-hydroxy-3-(4-hydroxy-3-methoxyphenyl)propanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58410 biolink:NamedThing 2-amino-5-oxocyclohex-1-enecarbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58521 biolink:NamedThing trans-3-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58528 biolink:NamedThing 3-hydroxypropanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58574 biolink:NamedThing 4-hydroxybutyryl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58583 biolink:NamedThing 4-acetamidobutanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58630 biolink:NamedThing N-methylanthraniloyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58669 biolink:NamedThing but-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58783 biolink:NamedThing 2-hydroxy-3-methylacyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58785 biolink:NamedThing 2,3-dihydroxy-2,3-dihydrobenzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58787 biolink:NamedThing cis-3,4-didehydroadipoyl-CoA semialdehyde(4-) monarch-merged.owl owl:Class CHEBI:58801 biolink:NamedThing 3-hydroxycyclohexa-1,5-diene-1-carbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58811 biolink:NamedThing phenylglyoxylyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58856 biolink:NamedThing 2,3-trans-enoyl CoA(4-) monarch-merged.owl owl:Class CHEBI:58897 biolink:NamedThing 1,4-dihydroxy-2-naphthoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:60015 biolink:NamedThing 2,3-dehydroacyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:61623 biolink:NamedThing fluoroacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62075 biolink:NamedThing (S)-3-hydroxyhexanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62077 biolink:NamedThing trans-hex-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62243 biolink:NamedThing trans,trans-octa-2,4-dienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62244 biolink:NamedThing trans,trans-deca-2,4-dienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62611 biolink:NamedThing (S)-3-hydroxyisobutyryl-CoA(4-) monarch-merged.owl owl:Class CHEBI:63252 biolink:NamedThing 2-oxepin-2(3H)-ylideneacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:63257 biolink:NamedThing 3,8-dioxooct-5-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:63458 biolink:NamedThing 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:64784 biolink:NamedThing [(1R)-2,2,3-trimethyl-5-oxocyclopent-3-enyl]acetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:64785 biolink:NamedThing [(2R)-3,3,4-trimethyl-6-oxo-3,6-dihydro-1H-pyran-2-yl]acetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:65111 biolink:NamedThing 3-substituted propionyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:66957 biolink:NamedThing 3,5,7-trioxododecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:67148 biolink:NamedThing 2-hydroxybenzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71211 biolink:NamedThing (4-coumaroyl)acetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71221 biolink:NamedThing feruloylacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71242 biolink:NamedThing malonyl-CoA methyl ester(4-) monarch-merged.owl owl:Class CHEBI:73500 biolink:NamedThing 3-hydroxy-3-(4-hydroxyphenyl)propionyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76270 biolink:NamedThing cyclohex-1-ene-1-carbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76271 biolink:NamedThing cyclohexane-1-carbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76526 biolink:NamedThing 6-oxocyclohex-1-ene-1-carbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77257 biolink:NamedThing (2S)-2-methylpentadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78357 biolink:NamedThing 9,17-dioxo-1,2,3,4,10,19-hexanorandrostan-5-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78376 biolink:NamedThing 2-hydroxy-7-methoxy-5-methyl-1-naphthoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78611 biolink:NamedThing 3-hydroxybutanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:82815 biolink:NamedThing 3-(methylthio)propanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84554 biolink:NamedThing 3,5-dihydroxyphenylacetyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84788 biolink:NamedThing trans,trans-2,4-hexadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84994 biolink:NamedThing 3-(methylthio)acryloyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84995 biolink:NamedThing 3-hydroxy-3-(methylthio)propanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84996 biolink:NamedThing 3-oxopropanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85008 biolink:NamedThing trans-4-coumaroyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85489 biolink:NamedThing cis-3-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85676 biolink:NamedThing 3-phenylpropanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87137 biolink:NamedThing dihydrocaffeoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87438 biolink:NamedThing lithocholyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87803 biolink:NamedThing 3-(m-hydroxyphenyl)propanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:88118 biolink:NamedThing 2,3-epoxy-2,3-dihydrobenzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:88147 biolink:NamedThing 2,5-dihydroxybenzoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:90726 biolink:NamedThing 3-oxoacyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:90736 biolink:NamedThing very long-chain acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:131448 biolink:NamedThing beta-D-Manp-(1->2)-beta-D-Manp-(1->2)-D-Manp monarch-merged.owl owl:Class CHEBI:146181 biolink:NamedThing mannotriose monarch-merged.owl owl:Class CHEBI:62785 biolink:NamedThing beta-D-Manp-(1->4)-beta-D-Manp-(1->4)-D-Manp monarch-merged.owl owl:Class CHEBI:131450 biolink:NamedThing 2,6-dihydroxybenzoate monarch-merged.owl owl:Class CHEBI:36084 biolink:NamedThing dihydroxybenzoate monarch-merged.owl owl:Class CHEBI:131856 biolink:NamedThing 3,5-dimethylorsellinate monarch-merged.owl owl:Class CHEBI:140211 biolink:NamedThing 3-bromo-4,5-dihydroxybenzoate monarch-merged.owl owl:Class CHEBI:16162 biolink:NamedThing o-orsellinate monarch-merged.owl owl:Class CHEBI:36241 biolink:NamedThing 3,4-dihydroxybenzoate monarch-merged.owl owl:Class CHEBI:36647 biolink:NamedThing 2,3-dihydroxy-p-cumate monarch-merged.owl owl:Class CHEBI:36654 biolink:NamedThing 2,3-dihydroxybenzoate monarch-merged.owl owl:Class CHEBI:58044 biolink:NamedThing 2,5-dihydroxybenzoate monarch-merged.owl owl:Class CHEBI:64694 biolink:NamedThing 3,4-dihydroxy-5-polyprenylbenzoate monarch-merged.owl owl:Class CHEBI:66961 biolink:NamedThing cannabinerolate monarch-merged.owl owl:Class CHEBI:66962 biolink:NamedThing cannabigerolate monarch-merged.owl owl:Class CHEBI:67136 biolink:NamedThing cannabidiolate monarch-merged.owl owl:Class CHEBI:131487 biolink:NamedThing 1,2-diacyl-3-(alpha-D-6-sulfoquinovosyl)-sn-glycerol(1-) monarch-merged.owl owl:Class CHEBI:33554 biolink:NamedThing organosulfonate oxoanion An organic anion obtained by deprotonation of the sufonate group(s) of any organosulfonic acid. monarch-merged.owl organosulfonate oxoanions|organosulfonate|organosulfonates -1 O3SR 80.064 79.95681 *S([O-])(=O)=O chebi_ontology owl:Class CHEBI:131822 biolink:NamedThing sulfamate monarch-merged.owl owl:Class CHEBI:132028 biolink:NamedThing tauroursodeoxycholate monarch-merged.owl owl:Class CHEBI:134249 biolink:NamedThing alkanesulfonate oxoanion An alkanesulfonate in which the carbon at position 1 is attached to R, which can represent hydrogens, a carbon chain, or other groups. monarch-merged.owl an alkanesulfonate|alkanesulfonate oxoanions|alkanesulfonates -1 CH2O3SR 94.091 93.97246 C(S([O-])(=O)=O)* MetaCyc:Alkanesulfonates CHEBI:22318 chebi_ontology owl:Class CHEBI:137724 biolink:NamedThing 7-oxotaurolithocholate monarch-merged.owl owl:Class CHEBI:137820 biolink:NamedThing 7-oxotaurodeoxycholate monarch-merged.owl owl:Class CHEBI:36257 biolink:NamedThing taurocholate monarch-merged.owl owl:Class CHEBI:36261 biolink:NamedThing taurodeoxycholate monarch-merged.owl owl:Class CHEBI:57552 biolink:NamedThing 2-oxopropyl-CoM(1-) monarch-merged.owl owl:Class CHEBI:57779 biolink:NamedThing tauropinate(1-) monarch-merged.owl owl:Class CHEBI:58286 biolink:NamedThing methyl-CoM(1-) monarch-merged.owl owl:Class CHEBI:58319 biolink:NamedThing coenzyme M(1-) monarch-merged.owl owl:Class CHEBI:58430 biolink:NamedThing (S)-2-hydroxypropyl-CoM(1-) monarch-merged.owl owl:Class CHEBI:58458 biolink:NamedThing (R)-2-hydroxypropyl-CoM(1-) monarch-merged.owl owl:Class CHEBI:62081 biolink:NamedThing 1,1-diunsubstituted alkanesulfonate An alkanesulfonate in which the carbon at position 1 is attached to at least two hydrogens. monarch-merged.owl 1,1-diunsubstituted alkanesulfonates|1,1-di-unsubstituted alkanesulfonate|1,1-di-unsubstituted alkanesulfonates -1 CH2O3SR 94.09000 93.97246 [H]C([H])([*])S([O-])(=O)=O MetaCyc:Alkanesulfonates|KEGG:C15521 chebi_ontology owl:Class CHEBI:64278 biolink:NamedThing Reactive Blue 5 quinol form(3-) monarch-merged.owl owl:Class CHEBI:77132 biolink:NamedThing 6-sulfo-D-quinovose(1-) monarch-merged.owl owl:Class CHEBI:77133 biolink:NamedThing 6-deoxy-6-sulfo-D-fructofuranose(1-) monarch-merged.owl owl:Class CHEBI:88091 biolink:NamedThing 6-deoxy-6-sulfoglucono-1,5-lactone(1-) monarch-merged.owl owl:Class CHEBI:9407 biolink:NamedThing taurochenodeoxycholate monarch-merged.owl owl:Class CHEBI:131522 biolink:NamedThing dTDP-4-(methylamino)-2,3,4,6-tetradeoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:61109 biolink:NamedThing pyrimidine nucleotide-sugar monarch-merged.owl owl:Class CHEBI:17297 biolink:NamedThing UDP-sugar monarch-merged.owl owl:Class CHEBI:20873 biolink:NamedThing CDP-sugar monarch-merged.owl owl:Class CHEBI:20878 biolink:NamedThing CMP-sugar monarch-merged.owl owl:Class CHEBI:22080 biolink:NamedThing TDP-sugar monarch-merged.owl owl:Class CHEBI:81461 biolink:NamedThing dTDP-4-dehydro-2,3,6-trideoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:81462 biolink:NamedThing dTDP-4-amino-2,3,4,6-tetradeoxy-alpha-D-glucose monarch-merged.owl owl:Class CHEBI:81463 biolink:NamedThing dTDP-alpha-D-forosamine monarch-merged.owl owl:Class CHEBI:26508 biolink:NamedThing quinoline N-oxide monarch-merged.owl owl:Class CHEBI:16907 biolink:NamedThing 4-nitroquinoline N-oxide monarch-merged.owl owl:Class CHEBI:28469 biolink:NamedThing 4-(hydroxyamino)quinoline N-oxide monarch-merged.owl owl:Class CHEBI:74818 biolink:NamedThing heteroaryl hydroxy compound Any organic aromatic compound having one or more hydroxy groups attached to a heteroarene ring. monarch-merged.owl hetaryl hydroxy compounds|heteroaryl hydroxy compounds|heteroaromatic hydroxy compounds|hetaryl hydroxy compound|heteroaromatic hydroxy compound chebi_ontology owl:Class CHEBI:17840 biolink:NamedThing indoxyl monarch-merged.owl owl:Class CHEBI:23792 biolink:NamedThing dihydroxypteridine monarch-merged.owl owl:Class CHEBI:24745 biolink:NamedThing hydroxypyridine Any member of the class of pyridines with at least one hydroxy substituent. monarch-merged.owl hydroxypyridines chebi_ontology owl:Class CHEBI:38028 biolink:NamedThing cyanuric acid monarch-merged.owl owl:Class CHEBI:38340 biolink:NamedThing hydroxypyrimidine monarch-merged.owl owl:Class CHEBI:75926 biolink:NamedThing 4-hydroxy-2-quinolone monarch-merged.owl owl:Class CHEBI:84149 biolink:NamedThing 4-hydroxy-6-undecylpyran-2-one monarch-merged.owl owl:Class CHEBI:84150 biolink:NamedThing 4-hydroxy-6-(2-oxotridecyl)pyran-2-one monarch-merged.owl owl:Class CHEBI:84168 biolink:NamedThing 4-hydroxy-6-pentadecylpyran-2-one monarch-merged.owl owl:Class CHEBI:84169 biolink:NamedThing 4-hydroxy-6-heptadecylpyran-2-one monarch-merged.owl owl:Class CHEBI:84170 biolink:NamedThing 4-hydroxy-6-nonadecylpyran-2-one monarch-merged.owl owl:Class CHEBI:84171 biolink:NamedThing 4-hydroxy-6-(2-oxoheptadecyl)pyran-2-one monarch-merged.owl owl:Class CHEBI:84172 biolink:NamedThing 4-hydroxy-6-(2-oxononadecyl)pyran-2-one monarch-merged.owl owl:Class CHEBI:84173 biolink:NamedThing 4-hydroxy-6-(2-oxohenicosyl)pyran-2-one monarch-merged.owl owl:Class CHEBI:84246 biolink:NamedThing 4-hydroxy-6-heptylpyran-2-one monarch-merged.owl owl:Class CHEBI:84253 biolink:NamedThing 4-hydroxy-5-methyl-6-pentadecylpyran-2-one monarch-merged.owl owl:Class CHEBI:84255 biolink:NamedThing 4-hydroxy-5-methyl-6-heptadecylpyran-2-one monarch-merged.owl owl:Class CHEBI:85511 biolink:NamedThing 6-(acylmethyl)-4-hydroxy-2H-pyran-2-one monarch-merged.owl owl:Class CHEBI:85514 biolink:NamedThing 6-alkyl-4-hydroxy-2H-pyran-2-one monarch-merged.owl owl:Class CHEBI:90917 biolink:NamedThing A-type aurachin monarch-merged.owl owl:Class CHEBI:131530 biolink:NamedThing pyridoxal(1+) A pyridinium ion obtained by protonation of the ring nitrogen of pyridoxal. monarch-merged.owl pyridoxal cation|4-formyl-3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-1-ium +1 C8H10NO3 InChI=1S/C8H9NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,4,10,12H,3H2,1H3/p+1 RADKZDMFGJYCBB-UHFFFAOYSA-O 168.170 168.06552 C1(O)=C(C)[NH+]=CC(CO)=C1C([H])=O chebi_ontology owl:Class CHEBI:27306 biolink:NamedThing vitamin B6 Any member of the group of pyridines that exhibit biological activity against vitamin B6 deficiency. Vitamin B6 deficiency is associated with microcytic anemia, electroencephalographic abnormalities, dermatitis with cheilosis (scaling on the lips and cracks at the corners of the mouth) and glossitis (swollen tongue), depression and confusion, and weakened immune function. Vitamin B6 consists of the vitamers pyridoxine, pyridoxal, and pyridoxamine and their respective 5'-phosphate esters (and includes their corresponding ionized and salt forms). monarch-merged.owl vitamina B6|vitamins B6|vitamin B6 vitamers|Vitamin B6|vitamin B-6|vitamin B6 vitamer|vitamine B6 chebi_ontology owl:Class CHEBI:131533 biolink:NamedThing pyridoxamine(2+) A pyridinium ion obtained by protonation of both nitrogens of pyridoxamine. monarch-merged.owl 4-(azaniumylmethyl)-3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-1-ium|pyridoxamine cation|pyridoxamine dication +2 C8H14N2O2 InChI=1S/C8H12N2O2/c1-5-8(12)7(2-9)6(4-11)3-10-5/h3,11-12H,2,4,9H2,1H3/p+2 NHZMQXZHNVQTQA-UHFFFAOYSA-P 170.209 170.10443 C1(O)=C(C)[NH+]=CC(CO)=C1C[NH3+] chebi_ontology owl:Class CHEBI:16410 biolink:NamedThing pyridoxamine A monohydroxypyridine that is pyridine substituted by a hydroxy group at position 3, an aminomethyl group at position 4, a hydroxymethyl group at position 5 and a methyl group at position 2. The 4-aminomethyl form of vitamin B6, it is used (in the form of the hydrochloride salt) for treatment of diabetic nephropathy. monarch-merged.owl Pyridoxamine|4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol|4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL|PM 0 C8H12N2O2 InChI=1S/C8H12N2O2/c1-5-8(12)7(2-9)6(4-11)3-10-5/h3,11-12H,2,4,9H2,1H3 NHZMQXZHNVQTQA-UHFFFAOYSA-N 168.19316 168.08988 Cc1ncc(CO)c(CN)c1O PMID:23841818|PMID:2580028|PMID:23504149|HMDB:HMDB0001431|Beilstein:6993|PMID:18434162|KNApSAcK:C00007504|CAS:85-87-0|Reaxys:6993|PMID:24094054|PDBeChem:PXM|Gmelin:774473|MetaCyc:PYRIDOXAMINE|Wikipedia:Pyridoxamine|KEGG:C00534 CHEBI:26426|CHEBI:45228|CHEBI:14978|CHEBI:8669 chebi_ontology owl:Class CHEBI:16709 biolink:NamedThing pyridoxine A hydroxymethylpyridine with hydroxymethyl groups at positions 4 and 5, a hydroxy group at position 3 and a methyl group at position 2. The 4-methanol form of vitamin B6, it is converted intoto pyridoxal phosphate which is a coenzyme for synthesis of amino acids, neurotransmitters, sphingolipids and aminolevulinic acid. monarch-merged.owl vitamin B6|2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine|2-methyl-4,5-dimethylol-pyridin-3-ol|5-hydroxy-6-methyl-3,4-pyridinedimethanol|2-methyl-3-hydroxy-4,5-di(hydroxymethyl)pyridine|pyridoxine|pyridoxolum|2-methyl-3-hydroxy-4,5-dihydroxymethylpyridine|pyridoxinum|3-hydroxy-4,5-dimethylol-alpha-picoline|piridossina|3-hydroxy-4,5-bis(hydroxymethyl)-2-methylpyridine|pyridoxina|2-methyl-4,5-bis(hydroxymethyl)-3-hydroxypyridine|3-hydroxy-2-picoline-4,5-dimethanol|4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol|4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol|2-Methyl-3-hydroxy-4,5-dihydroxymethyl-pyridin|Pyridoxol owl:Class CHEBI:17310 biolink:NamedThing pyridoxal A pyridinecarbaldehyde that is pyridine-4-carbaldehyde bearing methyl, hydroxy and hydroxymethyl substituents at positions 2, 3 and 5 respectively. The 4-carboxyaldehyde form of vitamin B6, it is converted into pyridoxal phosphate, a coenzyme for the synthesis of amino acids, neurotransmitters, sphingolipids and aminolevulinic acid. monarch-merged.owl 3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carbaldehyde|Pyridoxal|pyridoxal|3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE|pyridoxaldehyde 0 C8H9NO3 InChI=1S/C8H9NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,4,10,12H,3H2,1H3 RADKZDMFGJYCBB-UHFFFAOYSA-N 167.16200 167.05824 [H]C(=O)c1c(CO)cnc(C)c1O PDBeChem:PXL|Drug_Central:4134|KNApSAcK:C00007509|Reaxys:383768|PMID:22770225|DrugBank:DB00147|PMID:23801094|PMID:17765195|MetaCyc:PYRIDOXAL|CAS:66-72-8|PMID:24365359|HMDB:HMDB0001545|PMID:20381632|Beilstein:383768|Wikipedia:Pyridoxal|Gmelin:218674|KEGG:C00250 CHEBI:14976|CHEBI:8667|CHEBI:45112|CHEBI:26423 chebi_ontology owl:Class CHEBI:17405 biolink:NamedThing 4-pyridoxic acid monarch-merged.owl owl:Class CHEBI:30959 biolink:NamedThing 4-pyridoxate monarch-merged.owl owl:Class CHEBI:36970 biolink:NamedThing vitamin B6 phosphate monarch-merged.owl vitamin B-6 phosphates|vitamin B6 phosphates chebi_ontology owl:Class CHEBI:16797 biolink:NamedThing 1-methylnicotinamide monarch-merged.owl owl:Class CHEBI:17993 biolink:NamedThing 3-(3,4-dihydroxypyridinium-1-yl)-L-alanine monarch-merged.owl owl:Class CHEBI:50521 biolink:NamedThing N-methylnicotinic acid monarch-merged.owl owl:Class CHEBI:57975 biolink:NamedThing 1-(4-hydroxy-2-methylpyrimid-5-ylmethyl)-3-(2-hydroxyethyl)-2-methylpyridinium monarch-merged.owl owl:Class CHEBI:72290 biolink:NamedThing pyrithiamine monarch-merged.owl owl:Class CHEBI:131561 biolink:NamedThing hyaluronic acid synthesis inhibitor monarch-merged.owl owl:Class CHEBI:35222 biolink:NamedThing inhibitor A substance that diminishes the rate of a chemical reaction. monarch-merged.owl inhibitor|inhibitors|inhibidor|inhibiteur chebi_ontology owl:Class CHEBI:138977 biolink:NamedThing quorum sensing inhibitor monarch-merged.owl owl:Class CHEBI:140922 biolink:NamedThing glioma-associated oncogene inhibitor monarch-merged.owl owl:Class CHEBI:145437 biolink:NamedThing uncoupling protein inhibitor monarch-merged.owl owl:Class CHEBI:173084 biolink:NamedThing ferroptosis inhibitor Any substance that inhibits the process of ferroptosis (a type of programmed cell death dependent on iron and characterized by the accumulation of lipid peroxides) in organisms. monarch-merged.owl ferroptosis inhibitors PMID:32015325|Wikipedia:Ferroptosis|PMID:33495651|PMID:32413317|PMID:32256352 chebi_ontology owl:Class CHEBI:23924 biolink:NamedThing enzyme inhibitor A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction. monarch-merged.owl inhibiteur enzymatique|enzyme inhibitor|inhibiteurs enzymatiques|inhibidor enzimatico|inhibidores enzimaticos|enzyme inhibitors chebi_ontology owl:Class CHEBI:63173 biolink:NamedThing T-cell proliferation inhibitor An inhibitor that interferes with the process of T-cell proliferation. monarch-merged.owl T-cell proliferation inhibitors chebi_ontology owl:Class CHEBI:63330 biolink:NamedThing sodium-dependent Pi-transporter inhibitor monarch-merged.owl owl:Class CHEBI:67195 biolink:NamedThing gap junctional intercellular communication inhibitor monarch-merged.owl owl:Class CHEBI:68494 biolink:NamedThing apoptosis inhibitor monarch-merged.owl owl:Class CHEBI:70728 biolink:NamedThing actin polymerisation inhibitor monarch-merged.owl owl:Class CHEBI:72771 biolink:NamedThing breast cancer resistance protein inhibitor monarch-merged.owl owl:Class CHEBI:73240 biolink:NamedThing NF-kappaB inhibitor monarch-merged.owl owl:Class CHEBI:73267 biolink:NamedThing oxidative phosphorylation inhibitor monarch-merged.owl owl:Class CHEBI:83317 biolink:NamedThing sterol biosynthesis inhibitor monarch-merged.owl owl:Class CHEBI:85425 biolink:NamedThing glycine transporter inhibitor Any substance that inhibits the action of glycine transporters. monarch-merged.owl glycine transporter inhibitors chebi_ontology owl:Class CHEBI:88230 biolink:NamedThing autophagy inhibitor Any compound that inhibits the process of autophagy (the self-digestion of one or more components of a cell through the action of enzymes originating within the same cell). monarch-merged.owl autophagocytosis inhibitors|autophagy inhibitors|autophagocytosis inhibitor PMID:24830781|PMID:25793774|PMID:25727221|PMID:25896709|Wikipedia:Autophagy chebi_ontology owl:Class CHEBI:91025 biolink:NamedThing erythropoietin inhibitor monarch-merged.owl owl:Class CHEBI:131562 biolink:NamedThing (5S,15S)-5-hydroperoxy-15-HETE monarch-merged.owl owl:Class CHEBI:131564 biolink:NamedThing (5S,15S)-5-hydroperoxy-15-HETE(1-) monarch-merged.owl owl:Class CHEBI:134019 biolink:NamedThing hydroperoxy polyunsaturated fatty acid anion monarch-merged.owl owl:Class CHEBI:131875 biolink:NamedThing hydroperoxyicosatrienoate monarch-merged.owl owl:Class CHEBI:131876 biolink:NamedThing hydroperoxyicosapentaenoate monarch-merged.owl owl:Class CHEBI:133558 biolink:NamedThing hydroperoxyoctadecatrienoate monarch-merged.owl owl:Class CHEBI:133652 biolink:NamedThing hydroperoxy(epoxy)icosatrienoate monarch-merged.owl owl:Class CHEBI:133653 biolink:NamedThing hydroperoxy(hydroxy)icosapentaenoate monarch-merged.owl owl:Class CHEBI:134057 biolink:NamedThing (4Z,7Z,11E,13Z,16Z,19Z)-10-hydroperoxydocosahexaenoate monarch-merged.owl owl:Class CHEBI:134248 biolink:NamedThing (11R)-11-hydroperoxylinoleate monarch-merged.owl owl:Class CHEBI:137544 biolink:NamedThing bis(hydroperoxy)icosatetraenoate monarch-merged.owl owl:Class CHEBI:137548 biolink:NamedThing hydroperoxy(hydroxy)icosatetraenoate monarch-merged.owl owl:Class CHEBI:57444 biolink:NamedThing 12(S)-HPETE(1-) monarch-merged.owl owl:Class CHEBI:57467 biolink:NamedThing (11S)-11-hydroperoxylinoleate monarch-merged.owl owl:Class CHEBI:63324 biolink:NamedThing (8E,10R,12Z)-10-hydroperoxy-8,12-octadecadienoate monarch-merged.owl owl:Class CHEBI:75230 biolink:NamedThing 12(R)-HPETE(1-) monarch-merged.owl owl:Class CHEBI:75346 biolink:NamedThing (8E,10S,12Z)-10-hydroperoxyoctadeca-8,12-dienoate monarch-merged.owl owl:Class CHEBI:76161 biolink:NamedThing (R)-2-hydroperoxy-alpha-linolenate monarch-merged.owl owl:Class CHEBI:78046 biolink:NamedThing 12(S)-HPE(5,8,10)TrE(1-) monarch-merged.owl owl:Class CHEBI:78078 biolink:NamedThing 12-HPEPE(1-) monarch-merged.owl owl:Class CHEBI:137546 biolink:NamedThing (5S)-hydroxy-(15S)-hydroperoxy-(6E,8Z,11Z,13E)-icosatetraenoate monarch-merged.owl owl:Class CHEBI:137547 biolink:NamedThing (5S,6R)-dihydroxy-(15S)-hydroperoxy-(7E,9E,11Z,13E)-icosatetraenoate monarch-merged.owl owl:Class CHEBI:64012 biolink:NamedThing hydroperoxy fatty acid anion A fatty acid anion that is the conjugate base of any hydroperoxy fatty acid, formed by deprotonation of the carboxylic acid moiety. monarch-merged.owl hydroperoxy fatty acid anions chebi_ontology owl:Class CHEBI:133557 biolink:NamedThing hydroperoxyoctadecenoate monarch-merged.owl owl:Class CHEBI:133795 biolink:NamedThing (4Z,7Z,10Z,13Z,15E,17S,19Z)-17-hydroperoxydocosahexaenoate monarch-merged.owl owl:Class CHEBI:133796 biolink:NamedThing (4Z,7Z,10Z,13Z,15E,17S)-17-hydroperoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133797 biolink:NamedThing (7Z,10Z,13Z,15E,19Z)-17-hydroperoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133798 biolink:NamedThing (7Z,10Z,12E,16Z,19Z)-14-hydroperoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133799 biolink:NamedThing (4Z,7Z,10Z,12E,16Z)-14-hydroperoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133899 biolink:NamedThing 8(S),15(S)-DiHPETE(1-) monarch-merged.owl owl:Class CHEBI:133900 biolink:NamedThing 14(R),15(S)-DiHPETE(1-) monarch-merged.owl owl:Class CHEBI:133991 biolink:NamedThing (9S,10E,12Z,14E,16S)-9,16-bis(hydroperoxy)octadecatrienoate monarch-merged.owl owl:Class CHEBI:147340 biolink:NamedThing (2R)-2-hydroperoxy fatty acid anion monarch-merged.owl owl:Class CHEBI:59720 biolink:NamedThing HPETE anion An anion arising from deprotonation of the carboxylic acid function of any mono-hydroperoxy (e)icosatetraenoic acid (HPETE) monarch-merged.owl HPETE anions|a hydroperoxyeicosatetraenoate -1 C20H31O4 335.45830 335.22223 chebi_ontology owl:Class CHEBI:75341 biolink:NamedThing (8E,10S)-10-hydroperoxy-8-octadecenoate monarch-merged.owl owl:Class CHEBI:77755 biolink:NamedThing 10-hydroperoxy-8E-octadecenoate monarch-merged.owl owl:Class CHEBI:83334 biolink:NamedThing 12-HPE(8,10,14)TrE(1-) monarch-merged.owl owl:Class CHEBI:83336 biolink:NamedThing 14-HPDHE(1-) monarch-merged.owl owl:Class CHEBI:90823 biolink:NamedThing 13-HPODE(1-) monarch-merged.owl owl:Class CHEBI:131565 biolink:NamedThing steroid aldehyde Any steroid substituted by a formyl group. monarch-merged.owl steroid aldehydes chebi_ontology owl:Class CHEBI:17478 biolink:NamedThing aldehyde A compound RC(=O)H, in which a carbonyl group is bonded to one hydrogen atom and to one R group. monarch-merged.owl an aldehyde|aldehydum|aldehydes|aldehidos|aldehido|aldehyde|Aldehyde|RCHO|RC(=O)H|Aldehyd 0 CHOR 29.01800 29.00274 [H]C([*])=O KEGG:C00071 CHEBI:2554|CHEBI:8750|CHEBI:13806|CHEBI:13432|CHEBI:13753|CHEBI:22291|CHEBI:13805 chebi_ontology owl:Class CHEBI:136456 biolink:NamedThing glycolaldehyde phosphate monarch-merged.owl owl:Class CHEBI:137677 biolink:NamedThing glycolaldehyde triphosphate monarch-merged.owl owl:Class CHEBI:15343 biolink:NamedThing acetaldehyde monarch-merged.owl owl:Class CHEBI:15610 biolink:NamedThing gibberellin A12 aldehyde monarch-merged.owl owl:Class CHEBI:15624 biolink:NamedThing (4S,5S)-4,5-dihydroxy-2,6-dioxohexanoic acid monarch-merged.owl owl:Class CHEBI:16055 biolink:NamedThing aldehydo-L-rhamnose monarch-merged.owl owl:Class CHEBI:16256 biolink:NamedThing 2-methyl-3-oxopropanoic acid monarch-merged.owl owl:Class CHEBI:16425 biolink:NamedThing 16-epivellosimine monarch-merged.owl owl:Class CHEBI:16829 biolink:NamedThing polyneuridine aldehyde monarch-merged.owl owl:Class CHEBI:17138 biolink:NamedThing glyceraldehyde 3-phosphate monarch-merged.owl owl:Class CHEBI:17415 biolink:NamedThing 2,5-dioxopentanoic acid monarch-merged.owl owl:Class CHEBI:17782 biolink:NamedThing 5-dehydro-4-deoxy-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:18057 biolink:NamedThing vellosimine monarch-merged.owl owl:Class CHEBI:22492 biolink:NamedThing amino aldehyde Any aldehyde which contains an amino group. monarch-merged.owl PMID:17105264 chebi_ontology owl:Class CHEBI:22939 biolink:NamedThing butanals monarch-merged.owl owl:Class CHEBI:22968 biolink:NamedThing butynal monarch-merged.owl owl:Class CHEBI:23041 biolink:NamedThing carotenal monarch-merged.owl owl:Class CHEBI:24387 biolink:NamedThing glycolaldehydes monarch-merged.owl owl:Class CHEBI:24960 biolink:NamedThing ketoaldehyde Any compound that has an aldehydic and ketonic group in the same molecule. monarch-merged.owl ketoaldehydes KEGG:C01928 CHEBI:6124 chebi_ontology owl:Class CHEBI:25973 biolink:NamedThing phenylacetaldehydes monarch-merged.owl owl:Class CHEBI:26282 biolink:NamedThing propanals An aldehyde based on a propanal skeleton and its derivatives. monarch-merged.owl chebi_ontology owl:Class CHEBI:33855 biolink:NamedThing arenecarbaldehyde Any aldehyde in which the carbonyl group is attached to an aromatic moiety. monarch-merged.owl an aromatic aldehyde|aryl aldehydes|arenecarbaldehyde|arenecarbaldehydes|Aromatic aldehyde|aryl aldehyde 0 CHOR 29.018 29.00274 *C(=O)[H] KEGG:C00193|MetaCyc:Aryl-Aldehyde CHEBI:2832|CHEBI:13819|CHEBI:87908|CHEBI:22621 chebi_ontology owl:Class CHEBI:34768 biolink:NamedThing furfural monarch-merged.owl owl:Class CHEBI:38124 biolink:NamedThing dialdehyde Any aldehyde with two aldehyde groups. monarch-merged.owl bialdehydes|bialdehyde|dialdehydes chebi_ontology owl:Class CHEBI:47820 biolink:NamedThing (1S)-1-hydroxy-23-oxo-24,25,26,27-tetranorcalciol monarch-merged.owl owl:Class CHEBI:49104 biolink:NamedThing heteroarenecarbaldehyde An aldehyde in which a formyl group is located on a heteroarene. monarch-merged.owl chebi_ontology owl:Class CHEBI:50413 biolink:NamedThing hydroxyaldehyde monarch-merged.owl owl:Class CHEBI:51718 biolink:NamedThing alpha,beta-unsaturated aldehyde monarch-merged.owl owl:Class CHEBI:61042 biolink:NamedThing 1-hexadecanoyl-2-(9-oxononanoyl)-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:63164 biolink:NamedThing prosolanapyrone III monarch-merged.owl owl:Class CHEBI:63465 biolink:NamedThing marneral monarch-merged.owl owl:Class CHEBI:63658 biolink:NamedThing 9beta-pimara-7,15-dien-19-al monarch-merged.owl owl:Class CHEBI:65041 biolink:NamedThing dihydrochanoclavine-I aldehyde monarch-merged.owl owl:Class CHEBI:67225 biolink:NamedThing 2'-deamino-2'-hydroxy-6'-dehydroparomamine monarch-merged.owl owl:Class CHEBI:73359 biolink:NamedThing alpha-CH2-containing aldehyde monarch-merged.owl owl:Class CHEBI:76328 biolink:NamedThing omega-oxo fatty acid monarch-merged.owl owl:Class CHEBI:77890 biolink:NamedThing 1-O-palmitoyl-2-O-(5-oxovaleryl)-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:86258 biolink:NamedThing uridine-5'-aldehyde monarch-merged.owl owl:Class CHEBI:131591 biolink:NamedThing C18-steroid monarch-merged.owl owl:Class CHEBI:131619 biolink:NamedThing C27-steroid A steroid compound with a structure based on a 27-carbon (cholestane) skeleton. monarch-merged.owl C27-steroids chebi_ontology owl:Class CHEBI:131621 biolink:NamedThing C19-steroid A steroid compound with a structure based on a 19-carbon (androstane) skeleton. monarch-merged.owl C19-steroids chebi_ontology owl:Class CHEBI:131632 biolink:NamedThing lanostane derivative monarch-merged.owl owl:Class CHEBI:131634 biolink:NamedThing pregnane derivative monarch-merged.owl owl:Class CHEBI:131635 biolink:NamedThing estrane derivative monarch-merged.owl owl:Class CHEBI:131657 biolink:NamedThing cholane derivative monarch-merged.owl owl:Class CHEBI:131702 biolink:NamedThing stigmastane derivative monarch-merged.owl owl:Class CHEBI:136889 biolink:NamedThing 5beta steroid Any steroid that has beta-configuration at position 5. monarch-merged.owl 5beta-steroid|5beta-steroids|5beta steroids chebi_ontology owl:Class CHEBI:138029 biolink:NamedThing 14alpha-methyl steroid monarch-merged.owl owl:Class CHEBI:138031 biolink:NamedThing Delta(14) steroid monarch-merged.owl owl:Class CHEBI:145217 biolink:NamedThing epoxy steroid monarch-merged.owl owl:Class CHEBI:145945 biolink:NamedThing 4beta-hydroxymethyl steroid monarch-merged.owl owl:Class CHEBI:23897 biolink:NamedThing ecdysteroid monarch-merged.owl owl:Class CHEBI:26761 biolink:NamedThing steroid antibiotic monarch-merged.owl owl:Class CHEBI:26763 biolink:NamedThing steroid glucosiduronic acid monarch-merged.owl owl:Class CHEBI:26764 biolink:NamedThing steroid hormone Any steroid that acts as hormone. monarch-merged.owl hormone steroide|hormona esteroide|Steroidhormone|steroid hormones|hormones steroides|hormonas esteroideas|Steroidhormon chebi_ontology owl:Class CHEBI:26766 biolink:NamedThing steroid lactone monarch-merged.owl steroid lactones KEGG:C15507 chebi_ontology owl:Class CHEBI:35350 biolink:NamedThing hydroxy steroid monarch-merged.owl Hydroxysteroid|hydroxy steroids|hydroxysteroids KEGG:C02159 CHEBI:24748|CHEBI:5814 chebi_ontology owl:Class CHEBI:35508 biolink:NamedThing steroid fundamental parent monarch-merged.owl steroid fundamental parents chebi_ontology owl:Class CHEBI:35788 biolink:NamedThing seco-steroid monarch-merged.owl seco-steroids chebi_ontology owl:Class CHEBI:35789 biolink:NamedThing oxo steroid monarch-merged.owl oxo steroids|ketosteroids|oxosteroids|keto steroids CHEBI:24979|CHEBI:25804 chebi_ontology owl:Class CHEBI:36078 biolink:NamedThing cholanoid monarch-merged.owl bile acids and derivatives|cholanoids LIPID_MAPS_class:LMST04 CHEBI:22867|CHEBI:50419 chebi_ontology owl:Class CHEBI:36488 biolink:NamedThing dammarane monarch-merged.owl owl:Class CHEBI:47880 biolink:NamedThing steroid ester monarch-merged.owl steroid esters KEGG:C15506 CHEBI:26762 chebi_ontology owl:Class CHEBI:47891 biolink:NamedThing steroid acid Any steroid substituted by at least one carboxy group. monarch-merged.owl steroid acids chebi_ontology owl:Class CHEBI:50402 biolink:NamedThing androstanoid Any steroid based on an androstane skeleton and its derivatives. monarch-merged.owl androstanoids chebi_ontology owl:Class CHEBI:50403 biolink:NamedThing ergostanoid monarch-merged.owl owl:Class CHEBI:50858 biolink:NamedThing corticosteroid A natural or synthetic analogue of the hormones secreted by the adrenal gland. monarch-merged.owl corticosteroids|corticoides|corticosteroides chebi_ontology owl:Class CHEBI:52035 biolink:NamedThing sulfooxy steroid monarch-merged.owl owl:Class CHEBI:61313 biolink:NamedThing C21-steroid A steroid that has a structure based on a 21-carbon (pregnane) skeleton. Note that individual examples may have ring substituents at other positions and/or contain double bonds, aromatic A-rings, expanded/contracted rings etc., so the formula and mass may vary from that given for the generic structure. monarch-merged.owl a C21-steroid 0 C21H36 InChI=1S/C21H36/c1-4-15-9-11-18-17-10-8-16-7-5-6-13-20(16,2)19(17)12-14-21(15,18)3/h15-19H,4-14H2,1-3H3 JWMFYGXQPXQEEM-UHFFFAOYSA-N 288.511 288.28170 C1CCCC2C1(C3C(CC2)C4C(CC3)(C(CC4)CC)C)C chebi_ontology owl:Class CHEBI:61655 biolink:NamedThing steroid saponin Any saponin derived from a hydroxysteroid. monarch-merged.owl steroid glycosides|sterol glycoside|steroid glycoside|steryl glycoside|glycosyl steroid|steroidal glycoside|glycosyl steroids|steryl glycosides|steroidal glycosides|sterol glycosides|glycosteroids|glycosteroid|steroid saponins owl:Class CHEBI:62447 biolink:NamedThing dammara-20,24-diene monarch-merged.owl owl:Class CHEBI:46874 biolink:NamedThing alpha-amino acid ester monarch-merged.owl owl:Class CHEBI:16185 biolink:NamedThing N(5)-acyl-L-ornithine ester monarch-merged.owl owl:Class CHEBI:44075 biolink:NamedThing methyl L-leucinate monarch-merged.owl owl:Class CHEBI:61165 biolink:NamedThing D-alanyl ester monarch-merged.owl owl:Class CHEBI:87167 biolink:NamedThing S-[(2E,6E)-farnesyl]-L-cysteine methyl ester monarch-merged.owl owl:Class CHEBI:84186 biolink:NamedThing L-proline derivative A proteinogenic amino acid derivative resulting from reaction of L-proline at the amino group or the carboxy group, or from the replacement of any hydrogen of L-proline by a heteroatom. monarch-merged.owl L-proline derivatives chebi_ontology owl:Class CHEBI:21374 biolink:NamedThing L-prolinamide monarch-merged.owl owl:Class CHEBI:131579 biolink:NamedThing pApA monarch-merged.owl owl:Class CHEBI:48638 biolink:NamedThing 5'-phospho-(3'->5')-dinucleotide monarch-merged.owl owl:Class CHEBI:48622 biolink:NamedThing pGpG monarch-merged.owl owl:Class CHEBI:38206 biolink:NamedThing chlorophyllide monarch-merged.owl owl:Class CHEBI:137300 biolink:NamedThing bacteriochlorophyllide e monarch-merged.owl owl:Class CHEBI:137302 biolink:NamedThing 7,7-dihydroxybacteriochlorophyllide c monarch-merged.owl owl:Class CHEBI:139553 biolink:NamedThing 7(1)-hydroxybacteriochlorophyllide d monarch-merged.owl owl:Class CHEBI:139555 biolink:NamedThing 7(1),7(1)-dihydroxybacteriochlorophyllide d monarch-merged.owl owl:Class CHEBI:16900 biolink:NamedThing chlorophyllide a monarch-merged.owl owl:Class CHEBI:26354 biolink:NamedThing protochlorophyllides monarch-merged.owl owl:Class CHEBI:38209 biolink:NamedThing chlorophyllide b monarch-merged.owl owl:Class CHEBI:38259 biolink:NamedThing divinyl chlorophyllide a monarch-merged.owl owl:Class CHEBI:48396 biolink:NamedThing 7(1)-hydroxychlorophyllide a monarch-merged.owl owl:Class CHEBI:74628 biolink:NamedThing 3-vinylbacteriochlorophyllide a monarch-merged.owl owl:Class CHEBI:81544 biolink:NamedThing 3-(1-hydroxyethyl)bacteriochlorophyllide a monarch-merged.owl owl:Class CHEBI:81545 biolink:NamedThing 3-(1-hydroxyethyl)chlorophyllide a monarch-merged.owl owl:Class CHEBI:81546 biolink:NamedThing bacteriochlorophyllide a monarch-merged.owl owl:Class CHEBI:81551 biolink:NamedThing bacteriochlorophyllide d monarch-merged.owl owl:Class CHEBI:81552 biolink:NamedThing bacteriochlorophyllide c monarch-merged.owl owl:Class CHEBI:91128 biolink:NamedThing 3-acetylchlorophyllide a monarch-merged.owl owl:Class CHEBI:91291 biolink:NamedThing bacteriochlorophyllide g monarch-merged.owl owl:Class CHEBI:131589 biolink:NamedThing 3-deoxy-D-glycero-beta-D-galacto-nonulosonic acid 9-phosphate monarch-merged.owl owl:Class CHEBI:24962 biolink:NamedThing ketoaldonic acid phosphate monarch-merged.owl owl:Class CHEBI:137109 biolink:NamedThing (2xi)-3-deoxy-7-O-phospho-beta-D-threo-hept-6-ulopyranosonic acid monarch-merged.owl owl:Class CHEBI:137455 biolink:NamedThing (R)-2-hydroxy-3-oxo-4-(phosphonooxy)butanoic acid monarch-merged.owl owl:Class CHEBI:15865 biolink:NamedThing 6-phospho-2-dehydro-D-gluconate(1-) monarch-merged.owl owl:Class CHEBI:15925 biolink:NamedThing 2-dehydro-3-deoxy-6-phospho-D-gluconic acid monarch-merged.owl owl:Class CHEBI:16925 biolink:NamedThing 6-phospho-5-dehydro-2-deoxy-D-gluconic acid monarch-merged.owl owl:Class CHEBI:17860 biolink:NamedThing 6-phospho-2-dehydro-3-deoxy-D-galactonic acid monarch-merged.owl owl:Class CHEBI:18150 biolink:NamedThing 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonic acid monarch-merged.owl owl:Class CHEBI:20750 biolink:NamedThing 6-phospho-2-dehydro-D-gluconate(3-) monarch-merged.owl owl:Class CHEBI:2229 biolink:NamedThing 6-phospho-2-dehydro-D-gluconic acid monarch-merged.owl owl:Class CHEBI:42115 biolink:NamedThing 3-deoxy-alpha-D-manno-2-octulosonic acid 8-phosphate monarch-merged.owl owl:Class CHEBI:63322 biolink:NamedThing (S)-2-hydroxy-3-oxo-4-(phosphonooxy)butanoic acid monarch-merged.owl owl:Class CHEBI:63436 biolink:NamedThing carbohydrate acid derivative A carbohydrate derivative that is formally obtained from a carbohydrate acid. monarch-merged.owl carbohydrate acid derivatives chebi_ontology owl:Class CHEBI:24302 biolink:NamedThing glucosiduronic acid monarch-merged.owl owl:Class CHEBI:25432 biolink:NamedThing muramic acids monarch-merged.owl owl:Class CHEBI:37696 biolink:NamedThing carbohydrate acid ester monarch-merged.owl owl:Class CHEBI:63437 biolink:NamedThing aldaric acid derivative monarch-merged.owl owl:Class CHEBI:63441 biolink:NamedThing aldonic acid derivative monarch-merged.owl owl:Class CHEBI:73777 biolink:NamedThing N-acetyl-D-mannosaminouronic acid monarch-merged.owl owl:Class CHEBI:87313 biolink:NamedThing 8-amino-3,8-dideoxy-alpha-D-manno-oct-2-ulosonic acid monarch-merged.owl owl:Class CHEBI:88270 biolink:NamedThing 6-deoxy-6-sulfo-D-gluconic acid monarch-merged.owl owl:Class CHEBI:90095 biolink:NamedThing 2-dehydro-3,6-dideoxy-6-sulfo-D-gluconic acid monarch-merged.owl owl:Class CHEBI:131593 biolink:NamedThing 3-deoxy-D-glycero-beta-D-galacto-nonulosonic acid monarch-merged.owl owl:Class CHEBI:131596 biolink:NamedThing CMP-3-deoxy-D-glycero-beta-D-galacto-nonulosonic acid monarch-merged.owl owl:Class CHEBI:131602 biolink:NamedThing CMP-8-amino-3,8-dideoxy-alpha-D-manno-oct-2-ulosonic acid monarch-merged.owl owl:Class CHEBI:16788 biolink:NamedThing CMP-N-acyl-beta-neuraminic acid monarch-merged.owl owl:Class CHEBI:18014 biolink:NamedThing CMP-3-deoxy-alpha-D-manno-octulosonic acid monarch-merged.owl owl:Class CHEBI:63778 biolink:NamedThing CMP-pseudaminic acid monarch-merged.owl owl:Class CHEBI:68683 biolink:NamedThing CMP-N,N-diacetyllegionaminic acid monarch-merged.owl owl:Class CHEBI:86284 biolink:NamedThing CMP-3-deoxy-beta-D-manno-octulosonic acid monarch-merged.owl owl:Class CHEBI:131603 biolink:NamedThing sucrose 6(G)-phosphate monarch-merged.owl owl:Class CHEBI:23843 biolink:NamedThing disaccharide phosphate monarch-merged.owl owl:Class CHEBI:16308 biolink:NamedThing sucrose 6(F)-phosphate monarch-merged.owl owl:Class CHEBI:17888 biolink:NamedThing 6-phospho-beta-D-glucosyl-(1->4)-D-glucose monarch-merged.owl owl:Class CHEBI:25004 biolink:NamedThing lactose phosphate monarch-merged.owl owl:Class CHEBI:27084 biolink:NamedThing trehalose phosphate monarch-merged.owl owl:Class CHEBI:51834 biolink:NamedThing beta-D-fructofuranosyl alpha-D-mannopyranoside 6(F)-phosphate monarch-merged.owl owl:Class CHEBI:71317 biolink:NamedThing N'-monoacetylchitobiose-6'-phosphate monarch-merged.owl owl:Class CHEBI:131604 biolink:NamedThing Mycoplasma genitalium metabolite Any bacterial metabolite produced during a metabolic reaction in Mycoplasma genitalium. monarch-merged.owl Mycoplasma genitalium metabolites chebi_ontology owl:Class CHEBI:88048 biolink:NamedThing cyanotoxin monarch-merged.owl owl:Class CHEBI:131605 biolink:NamedThing dicarboxylic acid monoester(1-) monarch-merged.owl owl:Class CHEBI:29067 biolink:NamedThing carboxylic acid anion The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated. monarch-merged.owl carboxylic acid anions|carboxylic anions|a carboxylate -1 CO2R 44.00950 43.98983 [O-]C([*])=O CHEBI:58657|CHEBI:13626|CHEBI:13945|CHEBI:23026 chebi_ontology owl:Class CHEBI:131864 biolink:NamedThing docosanoid anion monarch-merged.owl owl:Class CHEBI:133980 biolink:NamedThing oxidised coenzyme F420-(gamma-Glu)n polyanion monarch-merged.owl owl:Class CHEBI:137405 biolink:NamedThing (S)-2-halocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:137406 biolink:NamedThing (R)-2-halocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:139511 biolink:NamedThing reduced coenzyme F420-(gamma-Glu)n polyanion monarch-merged.owl owl:Class CHEBI:139589 biolink:NamedThing retinoid anion A carboxylic acid anion obtained by deprotonation of any retinoid carboxy group. monarch-merged.owl retinoid anions|retinoid carboxylate anion|retinoid carboxylic acid anions|retinoid carboxylic acid anion|retinoates|retinoate|retinoid carboxylate anions chebi_ontology owl:Class CHEBI:140533 biolink:NamedThing 3-acetamido-4-hydroxybenzoate monarch-merged.owl owl:Class CHEBI:16490 biolink:NamedThing S-adenosyl-4-methylthio-2-oxobutanoate monarch-merged.owl owl:Class CHEBI:16780 biolink:NamedThing N-(6-aminohexanoyl)-6-aminohexanoate monarch-merged.owl owl:Class CHEBI:26092 biolink:NamedThing phthalate monarch-merged.owl owl:Class CHEBI:30316 biolink:NamedThing dihydrolipoate monarch-merged.owl owl:Class CHEBI:33721 biolink:NamedThing carbohydrate acid anion monarch-merged.owl carbohydrate acid anion|carbohydrate acid anions chebi_ontology owl:Class CHEBI:35693 biolink:NamedThing dicarboxylic acid anion monarch-merged.owl dicarboxylic acid anion|dicarboxylic acid anions chebi_ontology owl:Class CHEBI:35753 biolink:NamedThing tricarboxylic acid anion Any anion of a tricarboxylic acid formed by deprotonation of at least one carboxy group. monarch-merged.owl tricarboxylic acid anions|tricarboxylic acid anion chebi_ontology owl:Class CHEBI:35754 biolink:NamedThing tetracarboxylic acid anion monarch-merged.owl owl:Class CHEBI:35755 biolink:NamedThing pentacarboxylic acid anion monarch-merged.owl owl:Class CHEBI:35903 biolink:NamedThing oxo carboxylic acid anion Any carboxylic acid anion containing at least one oxo group. monarch-merged.owl oxo carboxylic acid anions chebi_ontology owl:Class CHEBI:37022 biolink:NamedThing amino-acid anion monarch-merged.owl amino-acid anions|amino-acid anion|amino acid anions chebi_ontology owl:Class CHEBI:37030 biolink:NamedThing 3-oxohexanoate monarch-merged.owl owl:Class CHEBI:38716 biolink:NamedThing carboxylic acid dianion Any dianion containing at least one carboxy group. monarch-merged.owl carboxylic acid dianions|carboxylic acid dianion chebi_ontology owl:Class CHEBI:38717 biolink:NamedThing carboxylic acid trianion A trianion containing at least one carboxy group. monarch-merged.owl carboxylic acid trianions|carboxylic acid trianion chebi_ontology owl:Class CHEBI:43074 biolink:NamedThing (3S)-3-hydroxy-3-methylglutaryl-CoA(5-) monarch-merged.owl owl:Class CHEBI:52440 biolink:NamedThing cephalosporin carboxylic acid anion monarch-merged.owl owl:Class CHEBI:53664 biolink:NamedThing dehydroglycinate monarch-merged.owl owl:Class CHEBI:55358 biolink:NamedThing (R)-piperazine-2-carboxylate monarch-merged.owl owl:Class CHEBI:57670 biolink:NamedThing N-acylglycinate A carboxylic acid anion obtained by deprotonation of the carboxy group of any N-acylglycine. monarch-merged.owl an N-acylglycine -1 C3H3NO3R 101.06080 101.01129 [O-]C(=O)CNC([*])=O chebi_ontology owl:Class CHEBI:57738 biolink:NamedThing 2-arylpropionate monarch-merged.owl owl:Class CHEBI:58041 biolink:NamedThing heparosan N-sulfate L-iduronate polyanion monarch-merged.owl owl:Class CHEBI:58287 biolink:NamedThing heparosan-N-sulfate D-glucuronate monarch-merged.owl owl:Class CHEBI:58422 biolink:NamedThing chondroitin 4'-sulfate anion monarch-merged.owl owl:Class CHEBI:58803 biolink:NamedThing 7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oate monarch-merged.owl owl:Class CHEBI:58804 biolink:NamedThing 12alpha-hydroxy-3-oxochola-4,6-dien-24-oate monarch-merged.owl owl:Class CHEBI:58865 biolink:NamedThing N-carbamoyl-L-alpha-amino acid anion monarch-merged.owl owl:Class CHEBI:58947 biolink:NamedThing N-acylhomoserinate monarch-merged.owl owl:Class CHEBI:59139 biolink:NamedThing gibberellin carboxylic acid anion monarch-merged.owl owl:Class CHEBI:59140 biolink:NamedThing precorrin carboxylic acid anion monarch-merged.owl owl:Class CHEBI:59360 biolink:NamedThing hexacarboxylic acid anion monarch-merged.owl owl:Class CHEBI:59874 biolink:NamedThing N-acyl-L-alpha-amino acid anion A carboxylic acid anion that is the conjugate base of an N-acyl-L-alpha-amino acid arising from deprotonation of the C-1 carboxy group. monarch-merged.owl an N-acyl-L-amino acid|N-acyl-L-alpha-amino acid(1-) -1 C3H2NO3R2 100.05290 100.00347 [O-]C(=O)[C@H]([*])NC([*])=O chebi_ontology owl:Class CHEBI:59876 biolink:NamedThing N-acyl-D-alpha-amino acid anion The conjugate base of an N-acyl-D-alpha-amino acid arising from deprotonation of the C-1 carboxy group. monarch-merged.owl an N-acyl-D-amino acid|N-acyl-D-alpha-amino acid(1-) -1 C3H2NO3R2 100.05290 100.00347 [O-]C(=O)[C@@H]([*])NC([*])=O chebi_ontology owl:Class CHEBI:60073 biolink:NamedThing N-acylneuraminate A sialic acid anion arising from deprotonation of the carboxy group of an N-acylneuraminic acid; major species at pH 7.3. monarch-merged.owl 5-alkanamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulopyranosonate|an N-acylneuraminate|N-acylneuraminate cation -1 C10H15NO9R 293.22740 293.07468 [H][C@]1(OC(O)(C[C@H](O)[C@H]1NC([*])=O)C([O-])=O)[C@H](O)[C@H](O)CO chebi_ontology owl:Class CHEBI:60268 biolink:NamedThing phosphonatoformate monarch-merged.owl owl:Class CHEBI:60909 biolink:NamedThing (S)-ethylmalonyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:62766 biolink:NamedThing beta-D-glucosyl crocetin(1-) monarch-merged.owl owl:Class CHEBI:62770 biolink:NamedThing beta-D-gentiobiosyl crocetin(1-) monarch-merged.owl owl:Class CHEBI:62933 biolink:NamedThing oxylipin anion monarch-merged.owl owl:Class CHEBI:62944 biolink:NamedThing sialic acid anion A carboxylic acid anion that is the conjugate base of a sialic acid, formed by deprotonation of the carboxy group. monarch-merged.owl sialic acid anions chebi_ontology owl:Class CHEBI:63068 biolink:NamedThing octacarboxylic acid anion monarch-merged.owl owl:Class CHEBI:63551 biolink:NamedThing carbohydrate acid derivative anion A carboxylic acid anion resulting from the deprotonation of the carboxy group of a carbohydrate acid derivative. monarch-merged.owl carbohydrate acid anion derivative|carbohydrate acid anion derivatives|carbohydrate acid derivative anions chebi_ontology owl:Class CHEBI:66942 biolink:NamedThing 4-oxo-4-(pyridin-3-yl)butanoate monarch-merged.owl owl:Class CHEBI:66998 biolink:NamedThing histidinate derivative A carboxylic acid anion which is a conjugate base of a histidine derivative having either D- or L-configuration. monarch-merged.owl histidinate derivatives chebi_ontology owl:Class CHEBI:71259 biolink:NamedThing selenodiglutathione(2-) monarch-merged.owl owl:Class CHEBI:71265 biolink:NamedThing glutathioselenol(1-) monarch-merged.owl owl:Class CHEBI:85316 biolink:NamedThing (R)-ethylmalonyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:91007 biolink:NamedThing aromatic carboxylate A carboxylic acic anion obtained by deprotonation of the carboxy group of any aromatic carboxylic acid. Major species at pH 7.3. monarch-merged.owl an aromatic carboxylate -1 CO2R 44.010 43.98983 *C([O-])=O chebi_ontology owl:Class CHEBI:131610 biolink:NamedThing O-(beta-L-arabinofuranosyl)-trans-4-hydroxy-L-proline residue monarch-merged.owl owl:Class CHEBI:83228 biolink:NamedThing L-alpha-amino acid residue monarch-merged.owl owl:Class CHEBI:131709 biolink:NamedThing N(6)-(1-hydroxy-2-oxopropyl)-L-lysine residue(1+) monarch-merged.owl owl:Class CHEBI:131710 biolink:NamedThing S-(1-hydroxy-2-oxopropyl)-L-cysteine residue monarch-merged.owl owl:Class CHEBI:131803 biolink:NamedThing L-allysine residue monarch-merged.owl owl:Class CHEBI:132085 biolink:NamedThing O(3)-(beta-D-xylosyl)-L-serine residue monarch-merged.owl owl:Class CHEBI:132088 biolink:NamedThing O(3)-(beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine residue monarch-merged.owl owl:Class CHEBI:132090 biolink:NamedThing O(3)-(beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine residue monarch-merged.owl owl:Class CHEBI:132248 biolink:NamedThing N(4)-(N-acetyl-beta-D-glucosyl)-L-asparagine residue monarch-merged.owl owl:Class CHEBI:132415 biolink:NamedThing O(3)-(poly[(1->4)-beta-D-glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl]-(1->4)-beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine residue monarch-merged.owl owl:Class CHEBI:132416 biolink:NamedThing O(3)-(N-acetyl-alpha-D-glucosaminyl-poly[(1->4)-beta-D-glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl]-(1->4)-beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine residue monarch-merged.owl owl:Class CHEBI:132529 biolink:NamedThing N(4)-(oligosaccharide-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl)-L-asparagine residue monarch-merged.owl owl:Class CHEBI:133029 biolink:NamedThing S-octanoyl-L-cysteine residue monarch-merged.owl owl:Class CHEBI:133304 biolink:NamedThing S-anthraniloyl-L-cysteine residue monarch-merged.owl owl:Class CHEBI:133479 biolink:NamedThing S-(long-chain fatty acyl)-L-cysteine residue monarch-merged.owl owl:Class CHEBI:134208 biolink:NamedThing N-acetyl-alpha-D-glucosaminyl-L-tyrosyl residue monarch-merged.owl owl:Class CHEBI:136707 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-alpha-D-mannosyl-L-serine residue monarch-merged.owl owl:Class CHEBI:136709 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-alpha-D-mannosyl-L-threonine residue monarch-merged.owl owl:Class CHEBI:137321 biolink:NamedThing O-(alpha-D-mannosyl)-L-serine residue monarch-merged.owl owl:Class CHEBI:137323 biolink:NamedThing O-(alpha-D-mannosyl)-L-threonine residue monarch-merged.owl owl:Class CHEBI:137540 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->4)-alpha-D-mannosyl-L-threonine residue monarch-merged.owl owl:Class CHEBI:137949 biolink:NamedThing O(3)-(beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl)-L-serine residue monarch-merged.owl owl:Class CHEBI:137950 biolink:NamedThing O(3)-(beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl)-L-threonine residue monarch-merged.owl owl:Class CHEBI:137967 biolink:NamedThing N(6)-acyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:138021 biolink:NamedThing (3S)-3-hydroxy-L-histidine residue monarch-merged.owl owl:Class CHEBI:138035 biolink:NamedThing S-mycothiol-L-cysteine residue monarch-merged.owl owl:Class CHEBI:138052 biolink:NamedThing (3S)-3,4-dihydroxy-L-proline residue monarch-merged.owl owl:Class CHEBI:138067 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-L-threonine residue monarch-merged.owl owl:Class CHEBI:138107 biolink:NamedThing (3S)-3-hydroxy-L-asparagine residue monarch-merged.owl owl:Class CHEBI:138370 biolink:NamedThing N(6)-(gamma-glutamyl)lysine residue monarch-merged.owl owl:Class CHEBI:138595 biolink:NamedThing O-phosphocholine-L-serine residue monarch-merged.owl owl:Class CHEBI:139319 biolink:NamedThing S-disulfanyl-L-cysteine residue monarch-merged.owl owl:Class CHEBI:139580 biolink:NamedThing O(3)-[N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl]-L-threonine residue monarch-merged.owl owl:Class CHEBI:139581 biolink:NamedThing O(3)-[N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl]-L-serine residue monarch-merged.owl owl:Class CHEBI:139605 biolink:NamedThing O(3)-{beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-serine residue monarch-merged.owl owl:Class CHEBI:139607 biolink:NamedThing O(3)-{beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-threonine residue monarch-merged.owl owl:Class CHEBI:139611 biolink:NamedThing O(3)-{beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->3)-[beta-D-GlcNAc-(1->6)]-alpha-D-GalNAc}-L-serine residue monarch-merged.owl owl:Class CHEBI:139612 biolink:NamedThing O(3)-{N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl}-L-threonine residue monarch-merged.owl owl:Class CHEBI:140080 biolink:NamedThing O(3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl]-L-serine residue monarch-merged.owl owl:Class CHEBI:140083 biolink:NamedThing O(3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl]-L-threonine residue monarch-merged.owl owl:Class CHEBI:140085 biolink:NamedThing O(3)-{N-acetyl-beta-D-glucosaminyl-(1->2)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-alpha-D-mannosyl}-L-serine residue monarch-merged.owl owl:Class CHEBI:140087 biolink:NamedThing O(3)-{N-acetyl-beta-D-glucosaminyl-(1->2)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-alpha-D-mannosyl}-L-threonine residue monarch-merged.owl owl:Class CHEBI:140494 biolink:NamedThing O(3)-(beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-2-O-phospho-xylosyl)-L-serine(2-) residue monarch-merged.owl owl:Class CHEBI:140573 biolink:NamedThing alpha-D-glucosyl-L-tyrosyl residue monarch-merged.owl owl:Class CHEBI:140574 biolink:NamedThing (1,4-alpha-D-glucosyl)(n)-L-tyrosyl residue monarch-merged.owl owl:Class CHEBI:140575 biolink:NamedThing alpha-D-xylose-(1->3)-beta-D-glucose-L-seryl residue monarch-merged.owl owl:Class CHEBI:140576 biolink:NamedThing beta-D-glucose-L-seryl residue monarch-merged.owl owl:Class CHEBI:140577 biolink:NamedThing beta-D-glucosyl-L-threonyl residue monarch-merged.owl owl:Class CHEBI:140578 biolink:NamedThing alpha-D-xylose-(1->3)-beta-D-glucose-L-threonyl residue monarch-merged.owl owl:Class CHEBI:140599 biolink:NamedThing alpha-D-xylose-(1->3)-alpha-D-xylose-(1->3)-beta-D-glucose-L-seryl residue monarch-merged.owl owl:Class CHEBI:140600 biolink:NamedThing alpha-D-xylose-(1->3)-alpha-D-xylose-(1->3)-beta-D-glucose-L-threonyl residue monarch-merged.owl owl:Class CHEBI:140607 biolink:NamedThing S-(ADP-D-ribosyl)-L-cysteine(2-) residue monarch-merged.owl owl:Class CHEBI:141817 biolink:NamedThing 5-hydroxy-L-lysinium residue monarch-merged.owl owl:Class CHEBI:141828 biolink:NamedThing 3-hydroxy-L-asparagine residue monarch-merged.owl owl:Class CHEBI:141997 biolink:NamedThing hydroxy-L-argininium residue monarch-merged.owl owl:Class CHEBI:142057 biolink:NamedThing 3-hydroxy-L-aspartic acid residue monarch-merged.owl owl:Class CHEBI:142554 biolink:NamedThing N(omega)-(ADP-D-ribosyl)-L-argininium(1-) residue monarch-merged.owl owl:Class CHEBI:14919 biolink:NamedThing N(6)-lipoyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:14949 biolink:NamedThing N(6)-(S(8)-aminomethyldihydrolipoyl)-L-lysine residue monarch-merged.owl owl:Class CHEBI:16044 biolink:NamedThing L-methionine residue monarch-merged.owl owl:Class CHEBI:16692 biolink:NamedThing diphthamide residue monarch-merged.owl owl:Class CHEBI:29950 biolink:NamedThing L-cysteine residue monarch-merged.owl owl:Class CHEBI:29952 biolink:NamedThing L-arginine residue monarch-merged.owl owl:Class CHEBI:29958 biolink:NamedThing L-aspartic acid residue monarch-merged.owl owl:Class CHEBI:29967 biolink:NamedThing L-lysine residue monarch-merged.owl owl:Class CHEBI:29972 biolink:NamedThing L-glutamic acid residue monarch-merged.owl owl:Class CHEBI:29979 biolink:NamedThing L-histidine residue monarch-merged.owl owl:Class CHEBI:29999 biolink:NamedThing L-serine residue monarch-merged.owl owl:Class CHEBI:30011 biolink:NamedThing L-glutamine residue monarch-merged.owl owl:Class CHEBI:30013 biolink:NamedThing L-threonine residue monarch-merged.owl owl:Class CHEBI:32448 biolink:NamedThing L-cysteino group monarch-merged.owl owl:Class CHEBI:32622 biolink:NamedThing L-leucino group monarch-merged.owl owl:Class CHEBI:32668 biolink:NamedThing N(2)-L-glutamino group monarch-merged.owl owl:Class CHEBI:46854 biolink:NamedThing L-glutamo group monarch-merged.owl owl:Class CHEBI:46858 biolink:NamedThing L-tyrosine residue monarch-merged.owl owl:Class CHEBI:50342 biolink:NamedThing L-proline residue monarch-merged.owl owl:Class CHEBI:50347 biolink:NamedThing L-asparagine residue monarch-merged.owl owl:Class CHEBI:50746 biolink:NamedThing N(6)-dihydrolipoyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:53604 biolink:NamedThing N-acetyl-alpha-D-galactosaminyl-L-serine residue monarch-merged.owl owl:Class CHEBI:59108 biolink:NamedThing N(4)-glycosylated L-asparagine residue monarch-merged.owl owl:Class CHEBI:61891 biolink:NamedThing N(5)-methyl-L-glutamine residue monarch-merged.owl owl:Class CHEBI:61896 biolink:NamedThing N(omega),N(omega)-dimethyl-L-arginine residue monarch-merged.owl owl:Class CHEBI:61928 biolink:NamedThing N(6)-methyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:61930 biolink:NamedThing N(6)-acetyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:61939 biolink:NamedThing gamma-carboxy-L-glutamic acid residue monarch-merged.owl owl:Class CHEBI:61962 biolink:NamedThing S-oxy-L-cysteine residue monarch-merged.owl owl:Class CHEBI:61963 biolink:NamedThing 3-disulfanyl-L-alanine residue monarch-merged.owl owl:Class CHEBI:61964 biolink:NamedThing L-cysteine-S-dioxide residue monarch-merged.owl owl:Class CHEBI:61965 biolink:NamedThing trans-4-hydroxy-L-proline residue monarch-merged.owl owl:Class CHEBI:61967 biolink:NamedThing 3-sulfino-L-alanine residue monarch-merged.owl owl:Class CHEBI:61969 biolink:NamedThing N(6),N(6)-dimethyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:61971 biolink:NamedThing O-phospho-L-threonine residue monarch-merged.owl owl:Class CHEBI:61972 biolink:NamedThing O(4)-phospho-L-tyrosine residue monarch-merged.owl owl:Class CHEBI:61973 biolink:NamedThing S-hydroxy-L-cysteine residue monarch-merged.owl owl:Class CHEBI:64891 biolink:NamedThing O-(pantetheine-4'-phosphoryl)serine residue monarch-merged.owl owl:Class CHEBI:64936 biolink:NamedThing N(pros)-phospho-L-histidine residue monarch-merged.owl owl:Class CHEBI:65309 biolink:NamedThing N(omega)-methyl-L-arginine residue monarch-merged.owl owl:Class CHEBI:65316 biolink:NamedThing L-tyrosine-O-sulfate residue monarch-merged.owl owl:Class CHEBI:73619 biolink:NamedThing 3-methylthioaspartic acid residue monarch-merged.owl owl:Class CHEBI:73743 biolink:NamedThing 2-(3-amino-3-carboxypropyl)-L-histidine zwitterion residue monarch-merged.owl owl:Class CHEBI:73745 biolink:NamedThing 2-[3-carboxylato-3-(dimethylammonio)propyl]-L-histidine residue monarch-merged.owl owl:Class CHEBI:74151 biolink:NamedThing S-palmitoyl-L-cysteine residue monarch-merged.owl owl:Class CHEBI:74346 biolink:NamedThing FMN-L-threonine residue monarch-merged.owl owl:Class CHEBI:76241 biolink:NamedThing O-(S-acylpantetheine-4'-phosphoryl)serine residue monarch-merged.owl owl:Class CHEBI:78809 biolink:NamedThing N(6)-octanoyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:78815 biolink:NamedThing N(6)-(S(8)-acetyldihydrolipoyl)-L-lysine residue monarch-merged.owl owl:Class CHEBI:82612 biolink:NamedThing S-methyl-L-cysteine residue monarch-merged.owl owl:Class CHEBI:82693 biolink:NamedThing 2-[(3S)-3-carboxylato-3-(methylammonio)propyl]-L-histidine residue monarch-merged.owl owl:Class CHEBI:82795 biolink:NamedThing gamma-methyl L-glutamate residue monarch-merged.owl owl:Class CHEBI:83142 biolink:NamedThing N(6)-[(R)-S(8)-isobutyryldihydrolipoyl]-L-lysine residue monarch-merged.owl owl:Class CHEBI:83144 biolink:NamedThing biotinyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:83397 biolink:NamedThing L-citrulline residue monarch-merged.owl owl:Class CHEBI:83585 biolink:NamedThing N(tele)-phospho-L-histidine residue monarch-merged.owl owl:Class CHEBI:83625 biolink:NamedThing O-adenyl-L-tyrosine residue monarch-merged.owl owl:Class CHEBI:83697 biolink:NamedThing N(5)-alkyl-L-glutamine residue monarch-merged.owl owl:Class CHEBI:85189 biolink:NamedThing O-[(9Z)-hexadecenoyl]-L-serine residue monarch-merged.owl owl:Class CHEBI:85428 biolink:NamedThing trans-3-hydroxy-L-proline residue monarch-merged.owl owl:Class CHEBI:85501 biolink:NamedThing N(4)-(beta-D-glucosyl)-L-asparagine residue monarch-merged.owl owl:Class CHEBI:85621 biolink:NamedThing L-3-oxoalanine residue monarch-merged.owl owl:Class CHEBI:86019 biolink:NamedThing S-[(2E,6E)-farnesyl]-L-cysteine residue monarch-merged.owl owl:Class CHEBI:86021 biolink:NamedThing S-geranylgeranyl-L-cysteine residue monarch-merged.owl owl:Class CHEBI:87075 biolink:NamedThing O-(N-acetyl-alpha-D-galactosaminyl)-L-threonine residue monarch-merged.owl owl:Class CHEBI:87079 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl-L-serine residue monarch-merged.owl owl:Class CHEBI:87080 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl-L-threonine residue monarch-merged.owl owl:Class CHEBI:90595 biolink:NamedThing S-[(2E,6E)-farnesyl]-L-cysteino group monarch-merged.owl owl:Class CHEBI:90838 biolink:NamedThing O-(N-acetyl-beta-D-glucosaminyl)-L-serine residue monarch-merged.owl owl:Class CHEBI:90840 biolink:NamedThing O-(N-acetyl-beta-D-glucosaminyl)-L-threonine residue monarch-merged.owl owl:Class CHEBI:90870 biolink:NamedThing 3-iodo-L-tyrosine residue monarch-merged.owl owl:Class CHEBI:90871 biolink:NamedThing 3,5-diiodo-L-tyrosine residue monarch-merged.owl owl:Class CHEBI:90872 biolink:NamedThing L-thyroxine residue monarch-merged.owl owl:Class CHEBI:90874 biolink:NamedThing 3,3',5-triiodo-L-thyronine residue monarch-merged.owl owl:Class CHEBI:90975 biolink:NamedThing O(4)-(N-acetyl-alpha-D-galactosaminyl)-trans-4-hydroxy-L-proline residue monarch-merged.owl owl:Class CHEBI:52646 biolink:NamedThing leptomycin B monarch-merged.owl owl:Class CHEBI:72627 biolink:NamedThing 15-HEPE monarch-merged.owl owl:Class CHEBI:59644 biolink:NamedThing oxo fatty acid Any fatty acid containing at least one aldehydic or ketonic group in addition to the carboxylic acid group. monarch-merged.owl oxo fatty acids PMID:8454196|PMID:6434570|PMID:8638935 chebi_ontology owl:Class CHEBI:134416 biolink:NamedThing 3-oxo fatty acid monarch-merged.owl owl:Class CHEBI:139085 biolink:NamedThing (9R,13R)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoic acid monarch-merged.owl owl:Class CHEBI:15888 biolink:NamedThing 5-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:25799 biolink:NamedThing oxopentanoic acid A C5 fatty acid carrying an oxo group at any position. monarch-merged.owl oxopentanoic acid|oxovaleric acid 0 C5H8O3 116.115 116.04734 chebi_ontology owl:Class CHEBI:49265 biolink:NamedThing 8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-en-1-yl}cyclopentyl]octanoic acid monarch-merged.owl owl:Class CHEBI:6497 biolink:NamedThing lipoxin monarch-merged.owl owl:Class CHEBI:131620 biolink:NamedThing C24-steroid monarch-merged.owl owl:Class CHEBI:131636 biolink:NamedThing GDP-4-amino-3,4,6-trideoxy-alpha-D-threo-hex-3-enopyranose(2-) monarch-merged.owl owl:Class CHEBI:131639 biolink:NamedThing GDP-(2S,3S,6R)-3-hydroxy-5-imino-6-methyloxane(1-) monarch-merged.owl owl:Class CHEBI:136895 biolink:NamedThing dTDP-L-rhamnose(2-) monarch-merged.owl owl:Class CHEBI:137179 biolink:NamedThing UDP-2,3-diacyl-alpha-D-glucosamine(2-) monarch-merged.owl owl:Class CHEBI:137524 biolink:NamedThing CDP-D-ribulose(2-) monarch-merged.owl owl:Class CHEBI:137525 biolink:NamedThing CDP-D-ribose(2-) monarch-merged.owl owl:Class CHEBI:137740 biolink:NamedThing UDP-3-O-[(3R)-hydroxyacyl]-alpha-D-glucosamine(1-) monarch-merged.owl owl:Class CHEBI:137748 biolink:NamedThing UDP-2-N,3-O-bis[(3R)-3-hydroxyacyl]-alpha-D-glucosamine(2-) monarch-merged.owl owl:Class CHEBI:137931 biolink:NamedThing TDP-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:138034 biolink:NamedThing dTDP-4-formamido-4,6-dideoxy-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:138068 biolink:NamedThing ribonucleoside 5'-diphosphate-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:138087 biolink:NamedThing O-acyl-ADP-D-ribose(2-) monarch-merged.owl owl:Class CHEBI:140359 biolink:NamedThing UDP-monosaccharide(2-) monarch-merged.owl owl:Class CHEBI:140433 biolink:NamedThing GDP-6-deoxy-alpha-D-altrose(2-) monarch-merged.owl owl:Class CHEBI:17466 biolink:NamedThing GDP-D-mannuronate monarch-merged.owl owl:Class CHEBI:57273 biolink:NamedThing GDP-beta-L-fucose(2-) monarch-merged.owl owl:Class CHEBI:57275 biolink:NamedThing dTDP-D-galactose(2-) monarch-merged.owl owl:Class CHEBI:57477 biolink:NamedThing dTDP-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:57510 biolink:NamedThing dTDP-6-deoxy-beta-L-mannose(2-) monarch-merged.owl owl:Class CHEBI:57527 biolink:NamedThing GDP-alpha-D-mannose(2-) monarch-merged.owl owl:Class CHEBI:57564 biolink:NamedThing ADP-L-glycero-D-manno-heptose(2-) monarch-merged.owl owl:Class CHEBI:57572 biolink:NamedThing UDP-D-apiose(2-) monarch-merged.owl owl:Class CHEBI:57582 biolink:NamedThing dTDP-4-amino-4,6-dideoxy-D-glucose(1-) monarch-merged.owl owl:Class CHEBI:57596 biolink:NamedThing dTDP-4-amino-4,6-dideoxy-D-galactose(1-) monarch-merged.owl owl:Class CHEBI:57608 biolink:NamedThing CDP-ribitol(2-) monarch-merged.owl owl:Class CHEBI:57619 biolink:NamedThing CDP-abequose(2-) monarch-merged.owl owl:Class CHEBI:57631 biolink:NamedThing dTDP-L-dihydrostreptose(2-) monarch-merged.owl owl:Class CHEBI:57632 biolink:NamedThing UDP-alpha-D-xylose(2-) monarch-merged.owl owl:Class CHEBI:57635 biolink:NamedThing UDP-alpha-D-galacturonate(3-) monarch-merged.owl owl:Class CHEBI:57638 biolink:NamedThing GDP-6-deoxy-alpha-D-talose(2-) monarch-merged.owl owl:Class CHEBI:57649 biolink:NamedThing dTDP-4-dehydro-6-deoxy-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:57705 biolink:NamedThing UDP-N-acetyl-alpha-D-glucosamine(2-) monarch-merged.owl owl:Class CHEBI:57715 biolink:NamedThing UDP-N-acetyl-D-mannosamine(2-) monarch-merged.owl owl:Class CHEBI:57736 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-L-lysine(3-) monarch-merged.owl owl:Class CHEBI:57771 biolink:NamedThing UDP-N-acetyl-3-O-(1-carboxylatovinyl)-D-glucosamine(3-) monarch-merged.owl owl:Class CHEBI:57806 biolink:NamedThing UDP-N-acetyl-D-galactosamine 4,6-bissulfate(4-) monarch-merged.owl owl:Class CHEBI:57807 biolink:NamedThing UDP-2-acetamido-4-amino-2,4,6-trideoxy-D-glucose(1-) monarch-merged.owl owl:Class CHEBI:57810 biolink:NamedThing UDP-4-dehydro-6-deoxy-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:57812 biolink:NamedThing CMP-N-acetyl-beta-neuraminate(2-) monarch-merged.owl owl:Class CHEBI:57823 biolink:NamedThing 4-CDP-2-C-methyl-D-erythritol(2-) monarch-merged.owl owl:Class CHEBI:57837 biolink:NamedThing dTDP-4-dehydro-6-deoxy-D-galactose(2-) monarch-merged.owl owl:Class CHEBI:57847 biolink:NamedThing UDP-N-acetyl-D-galactosamine(2-) monarch-merged.owl owl:Class CHEBI:57863 biolink:NamedThing ADP-D-glycero-D-manno-heptose(2-) monarch-merged.owl owl:Class CHEBI:57919 biolink:NamedThing 4-CDP-2-C-methyl-D-erythritol 2-phosphate(4-) monarch-merged.owl owl:Class CHEBI:57931 biolink:NamedThing D-ribofuranosyl-ADP(2-) monarch-merged.owl owl:Class CHEBI:57945 biolink:NamedThing NADH(2-) monarch-merged.owl owl:Class CHEBI:57953 biolink:NamedThing UDP-N-acetylmuramoyl-L-alaninate(3-) monarch-merged.owl owl:Class CHEBI:57964 biolink:NamedThing GDP-4-dehydro-6-deoxy-alpha-D-mannose(2-) monarch-merged.owl owl:Class CHEBI:57967 biolink:NamedThing ADP-D-ribose(2-) monarch-merged.owl owl:Class CHEBI:57968 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-D-glutamate(4-) monarch-merged.owl owl:Class CHEBI:57984 biolink:NamedThing GDP-L-fucose(2-) monarch-merged.owl owl:Class CHEBI:58052 biolink:NamedThing UDP-alpha-D-glucuronate(3-) monarch-merged.owl owl:Class CHEBI:58078 biolink:NamedThing CDP-3,6-dideoxy-D-mannose(2-) monarch-merged.owl owl:Class CHEBI:58086 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine(3-) monarch-merged.owl owl:Class CHEBI:58099 biolink:NamedThing dTDP-6-deoxy-L-talose(2-) monarch-merged.owl owl:Class CHEBI:58106 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-N(6)-(L-alanyl)-L-lysyl-D-alanyl-D-alaninate(3-) monarch-merged.owl owl:Class CHEBI:58110 biolink:NamedThing CDP-3,6-dideoxy-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:58166 biolink:NamedThing CDP-4-dehydro-6-deoxy-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:58172 biolink:NamedThing dTDP-D-fucose(2-) monarch-merged.owl owl:Class CHEBI:58188 biolink:NamedThing UDP-N-acetyl-D-galactosamine 4-sulfate(3-) monarch-merged.owl owl:Class CHEBI:58224 biolink:NamedThing GDP-6-deoxy-alpha-D-mannose(2-) monarch-merged.owl owl:Class CHEBI:58233 biolink:NamedThing UDP-L-iduronate(3-) monarch-merged.owl owl:Class CHEBI:58283 biolink:NamedThing CDP-4-dehydro-3,6-dideoxy-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:58302 biolink:NamedThing UDP-2-acetamido-4-dehydro-2,6-dideoxy-beta-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:58309 biolink:NamedThing UDP-N-acetylmuramate(3-) monarch-merged.owl owl:Class CHEBI:58341 biolink:NamedThing UDP-L-arabinose(2-) monarch-merged.owl owl:Class CHEBI:58355 biolink:NamedThing GDP-L-galactose(2-) monarch-merged.owl owl:Class CHEBI:58376 biolink:NamedThing CMP-N-glycoloyl-beta-neuraminate(2-) monarch-merged.owl owl:Class CHEBI:58423 biolink:NamedThing UDP-D-galactofuranose(2-) monarch-merged.owl owl:Class CHEBI:58424 biolink:NamedThing 1-(5-phospho-D-ribosyl)-ATP(6-) monarch-merged.owl owl:Class CHEBI:58439 biolink:NamedThing UDP-D-galactose(2-) monarch-merged.owl owl:Class CHEBI:58510 biolink:NamedThing UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine(1-) monarch-merged.owl owl:Class CHEBI:58578 biolink:NamedThing UDP-N-acetyl-D-mannosaminouronate(3-) monarch-merged.owl owl:Class CHEBI:58582 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminoheptanedioate(4-) monarch-merged.owl owl:Class CHEBI:58660 biolink:NamedThing CDP-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:58673 biolink:NamedThing ADP-D-ribose 2'-phosphate(4-) monarch-merged.owl owl:Class CHEBI:58708 biolink:NamedThing UDP-4-amino-4-deoxy-beta-L-arabinopyranose(1-) monarch-merged.owl owl:Class CHEBI:58709 biolink:NamedThing UDP-4-deoxy-4-formamido-beta-L-arabinopyranose(2-) monarch-merged.owl owl:Class CHEBI:58710 biolink:NamedThing UDP-beta-L-threo-pentopyranos-4-ulose(2-) monarch-merged.owl owl:Class CHEBI:58745 biolink:NamedThing UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-glucuronate monarch-merged.owl owl:Class CHEBI:58746 biolink:NamedThing UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-mannuronate monarch-merged.owl owl:Class CHEBI:58753 biolink:NamedThing ADP-D-ribose 1''-phosphate(4-) monarch-merged.owl owl:Class CHEBI:58885 biolink:NamedThing UDP-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:58900 biolink:NamedThing UDP-2-acetamido-2-deoxy-D-glucuronate(3-) monarch-merged.owl owl:Class CHEBI:59457 biolink:NamedThing 1-(5-phosphonato-beta-D-ribosyl)-5'-AMP(4-) monarch-merged.owl owl:Class CHEBI:59825 biolink:NamedThing CMP-3-deoxy-alpha-D-manno-octulosonate(2-) monarch-merged.owl owl:Class CHEBI:59967 biolink:NamedThing ADP-D-glycero-beta-D-manno-heptose(2-) monarch-merged.owl owl:Class CHEBI:59971 biolink:NamedThing GDP-D-glycero-alpha-D-manno-heptose(2-) monarch-merged.owl owl:Class CHEBI:60009 biolink:NamedThing UDP-6-sulfoquinovose(3-) monarch-merged.owl owl:Class CHEBI:60101 biolink:NamedThing UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose(2-) monarch-merged.owl owl:Class CHEBI:60267 biolink:NamedThing N(omega)-(ADP-D-ribosyl)-L-arginine(1-) monarch-merged.owl owl:Class CHEBI:60981 biolink:NamedThing UDP-rhamnose(2-) monarch-merged.owl owl:Class CHEBI:61383 biolink:NamedThing dTDP-4-acetamido-4,6-dideoxy-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:61457 biolink:NamedThing UDP-beta-L-arabinopyranose(2-) monarch-merged.owl owl:Class CHEBI:61463 biolink:NamedThing UDP-beta-L-arabinofuranose(2-) monarch-merged.owl owl:Class CHEBI:61494 biolink:NamedThing UDP-3-O-[(3R)-3-hydroxytetradecanoyl]-N-acetylglucosamine(2-) monarch-merged.owl owl:Class CHEBI:61506 biolink:NamedThing ADP-L-glycero-beta-D-manno-heptose(2-) monarch-merged.owl owl:Class CHEBI:61562 biolink:NamedThing dTDP-4-acetamido-4,6-dideoxy-D-galactose(2-) monarch-merged.owl owl:Class CHEBI:62241 biolink:NamedThing UDP-N-acetyl-beta-L-fucosamine(2-) monarch-merged.owl owl:Class CHEBI:62245 biolink:NamedThing UDP-2-acetamido-3-ammonio-2,3-dideoxy-alpha-D-glucuronate(2-) monarch-merged.owl owl:Class CHEBI:62250 biolink:NamedThing UDP-2-acetamido-2-deoxy-alpha-D-ribo-hex-3-uluronate(3-) monarch-merged.owl owl:Class CHEBI:62372 biolink:NamedThing UDP-2-acetamido-2,6-dideoxy-beta-L-talose(2-) monarch-merged.owl owl:Class CHEBI:62375 biolink:NamedThing UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-hex-4-ulose(2-) monarch-merged.owl owl:Class CHEBI:62377 biolink:NamedThing UDP-2-acetamido-2,6-dideoxy-beta-L-lyxo-hex-4-ulose(2-) monarch-merged.owl owl:Class CHEBI:62830 biolink:NamedThing dTDP-4-dehydro-beta-L-rhamnose(2-) monarch-merged.owl owl:Class CHEBI:63260 biolink:NamedThing dTDP-alpha-D-desosamine(1-) monarch-merged.owl owl:Class CHEBI:63262 biolink:NamedThing dTDP-3-azaniumyl-3,4,6-trideoxy-alpha-D-glucose(1-) monarch-merged.owl owl:Class CHEBI:63265 biolink:NamedThing dTDP-3-azaniumyl-3,6-dideoxy-alpha-D-glucose(1-) monarch-merged.owl owl:Class CHEBI:63268 biolink:NamedThing dTDP-alpha-D-mycaminose(1-) monarch-merged.owl owl:Class CHEBI:63269 biolink:NamedThing dTDP-3-dehydro-6-deoxy-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:63277 biolink:NamedThing UDP-2-acetamido-4-azaniumyl-2,4,6-trideoxy-alpha-D-glucose(1-) monarch-merged.owl owl:Class CHEBI:63303 biolink:NamedThing dTDP-3-dehydro-6-deoxy-alpha-D-galactose(2-) monarch-merged.owl owl:Class CHEBI:63304 biolink:NamedThing dTDP-D-ravidosamine(1-) monarch-merged.owl owl:Class CHEBI:63305 biolink:NamedThing dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose(1-) monarch-merged.owl owl:Class CHEBI:63417 biolink:NamedThing UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altrose(2-) monarch-merged.owl owl:Class CHEBI:63676 biolink:NamedThing dTDP-3-acetamido-3,6-dideoxy-alpha-D-galactopyranose(2-) monarch-merged.owl owl:Class CHEBI:63680 biolink:NamedThing CMP-pseudaminate monarch-merged.owl owl:Class CHEBI:64074 biolink:NamedThing (S)-NADHX(2-) monarch-merged.owl owl:Class CHEBI:64075 biolink:NamedThing (R)-NADHX(2-) monarch-merged.owl owl:Class CHEBI:64076 biolink:NamedThing (S)-NADPHX(4-) monarch-merged.owl owl:Class CHEBI:64077 biolink:NamedThing (R)-NADPHX(4-) monarch-merged.owl owl:Class CHEBI:64353 biolink:NamedThing UDP-N-acetyl-alpha-D-glucosamine 3-phosphate(4-) monarch-merged.owl owl:Class CHEBI:67133 biolink:NamedThing UDP-2-acetamido-4-azaniumyl-2,4,6-trideoxy-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:67134 biolink:NamedThing UDP-N,N'-diacetylbacillosamine(2-) monarch-merged.owl owl:Class CHEBI:68560 biolink:NamedThing UDP-N-acetyl-6-(alpha-D-galactose-1-phosphonato)-alpha-D-glucosamine(3-) monarch-merged.owl owl:Class CHEBI:68670 biolink:NamedThing CMP-N,N-diacetyllegionaminate(2-) monarch-merged.owl owl:Class CHEBI:68671 biolink:NamedThing CMP-N-acyl-beta-neuraminate(2-) monarch-merged.owl owl:Class CHEBI:71358 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-N(6)-(L-alanyl)-L-lysyl-D-alanyl-D-alaninate(3-) monarch-merged.owl owl:Class CHEBI:71964 biolink:NamedThing UDP-alpha-D-kanosamine(1-) monarch-merged.owl owl:Class CHEBI:71965 biolink:NamedThing UDP-3-keto-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:73672 biolink:NamedThing cyclic ADP-ribose(2-) monarch-merged.owl owl:Class CHEBI:73931 biolink:NamedThing GDP-4-dehydro-3,6-dideoxy-alpha-D-mannose(2-) monarch-merged.owl owl:Class CHEBI:73932 biolink:NamedThing GDP-beta-L-colitose(2-) monarch-merged.owl owl:Class CHEBI:73996 biolink:NamedThing GDP-4-amino-4,6-dideoxy-alpha-D-mannose(1-) monarch-merged.owl owl:Class CHEBI:73997 biolink:NamedThing GDP-N-acetyl-alpha-D-perosamine(2-) monarch-merged.owl owl:Class CHEBI:74143 biolink:NamedThing dTDP-6-deoxy-alpha-D-allose(2-) monarch-merged.owl owl:Class CHEBI:74153 biolink:NamedThing dTDP-5,5-di-C-methyl-beta-L-lyxose(2-) monarch-merged.owl owl:Class CHEBI:75957 biolink:NamedThing dTDP-beta-L-4-epi-vancosamine(1-) monarch-merged.owl owl:Class CHEBI:75970 biolink:NamedThing 2'-phospho-cyclic ADP-ribose(3-) monarch-merged.owl owl:Class CHEBI:76253 biolink:NamedThing dTDP-4-dehydro-6-deoxy-alpha-D-gulose(2-) monarch-merged.owl owl:Class CHEBI:76275 biolink:NamedThing dTDP-alpha-D-fucofuranose(2-) monarch-merged.owl owl:Class CHEBI:76280 biolink:NamedThing dTDP-3-dehydro-4,6-dideoxy-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:76533 biolink:NamedThing NDP-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:76596 biolink:NamedThing ADP-D-ribose 1'',2''-cyclic phosphate(3-) monarch-merged.owl owl:Class CHEBI:76814 biolink:NamedThing dTDP-beta-L-mycarose(2-) monarch-merged.owl owl:Class CHEBI:76839 biolink:NamedThing dTDP-beta-L-vancosamine(1-) monarch-merged.owl owl:Class CHEBI:77141 biolink:NamedThing dTDP-beta-L-evernitrose(2-) monarch-merged.owl owl:Class CHEBI:77142 biolink:NamedThing dTDP-2,3,6-trideoxy-3-C-methyl-4-O-methyl-3-nitroso-beta-L-arabino-hexopyranose(2-) monarch-merged.owl owl:Class CHEBI:77143 biolink:NamedThing dTDP-N-hydroxy-beta-L-evernosamine(2-) monarch-merged.owl owl:Class CHEBI:77144 biolink:NamedThing dTDP-beta-L-evernosamine(1-) monarch-merged.owl owl:Class CHEBI:78301 biolink:NamedThing dTDP-beta-L-rhodosamine(1-) monarch-merged.owl owl:Class CHEBI:78302 biolink:NamedThing dTDP-2-deoxy-beta-L-fucose(2-) monarch-merged.owl owl:Class CHEBI:78717 biolink:NamedThing UDP-alpha-D-galactosamine(1-) monarch-merged.owl owl:Class CHEBI:78718 biolink:NamedThing UDP-alpha-D-glucosamine(1-) monarch-merged.owl owl:Class CHEBI:78981 biolink:NamedThing UDP-2-acetamido-2-deoxy-3-dehydro-alpha-D-glucopyranose(2-) monarch-merged.owl owl:Class CHEBI:83767 biolink:NamedThing 2''-O-acetyl-ADP-D-ribose(2-) monarch-merged.owl owl:Class CHEBI:83912 biolink:NamedThing N(6)-(UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-gamma-glutamyl)-D-lysine(3-) monarch-merged.owl owl:Class CHEBI:84537 biolink:NamedThing dTDP-4-dehydro-2,6-dideoxy-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:84540 biolink:NamedThing dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:84881 biolink:NamedThing GDP-D-mannose(2-) monarch-merged.owl owl:Class CHEBI:85417 biolink:NamedThing dTDP-beta-L-daunosamine(1-) monarch-merged.owl owl:Class CHEBI:85987 biolink:NamedThing CMP-3-deoxy-beta-D-manno-octulosonate(2-) monarch-merged.owl owl:Class CHEBI:86016 biolink:NamedThing GDP-N,N'-diacetylbacillosamine(2-) monarch-merged.owl owl:Class CHEBI:87829 biolink:NamedThing 2''-O-glutaryl-ADP-D-ribose(3-) monarch-merged.owl owl:Class CHEBI:87832 biolink:NamedThing 2''-O-succinyl-ADP-D-ribose(3-) monarch-merged.owl owl:Class CHEBI:87833 biolink:NamedThing 2''-O-malonyl-ADP-D-ribose(3-) monarch-merged.owl owl:Class CHEBI:88119 biolink:NamedThing dTDP-2,3-dehydro-2,6-dideoxy-4-keto-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:90944 biolink:NamedThing dTDP-4-dehydro-2,3,6-trideoxy-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:90945 biolink:NamedThing dTDP-4-ammonio-2,3,4,6-tetradeoxy-alpha-D-glucose(1-) monarch-merged.owl owl:Class CHEBI:90946 biolink:NamedThing dTDP-4-(methylammonio)-2,3,4,6-tetradeoxy-alpha-D-glucose(1-) monarch-merged.owl owl:Class CHEBI:90947 biolink:NamedThing dTDP-alpha-D-forosamine(1-) monarch-merged.owl owl:Class CHEBI:90989 biolink:NamedThing CMP-3-deoxy-D-glycero-beta-D-galacto-nonulosonate(2-) monarch-merged.owl owl:Class CHEBI:91089 biolink:NamedThing CMP-8-amino-3,8-dideoxy-alpha-D-manno-oct-2-ulosonate(1-) monarch-merged.owl owl:Class CHEBI:36883 biolink:NamedThing 6-oxo steroid monarch-merged.owl owl:Class CHEBI:36884 biolink:NamedThing 26-oxo steroid monarch-merged.owl owl:Class CHEBI:36885 biolink:NamedThing 20-oxo steroid An oxo steroid carrying an oxo group at position 20. monarch-merged.owl 20-oxo steroids chebi_ontology owl:Class CHEBI:36886 biolink:NamedThing 21-oxo steroid monarch-merged.owl owl:Class CHEBI:36887 biolink:NamedThing 18-oxo steroid monarch-merged.owl 18-oxo steroids chebi_ontology owl:Class CHEBI:38149 biolink:NamedThing 19-oxo steroid monarch-merged.owl owl:Class CHEBI:47786 biolink:NamedThing 16-oxo steroid monarch-merged.owl owl:Class CHEBI:47787 biolink:NamedThing 11-oxo steroid Any oxo steroid that has an oxo substituent at position 11. monarch-merged.owl an 11-oxosteroid|11-Oxosteroid|11-oxosteroids|11-oxo steroids 0 C19H29OR 273.434 273.22184 C12(CCCCC1CCC3C2C(CC4(C3CCC4*)C)=O)C KEGG:C01985 CHEBI:725|CHEBI:19127|CHEBI:13773 chebi_ontology owl:Class CHEBI:47836 biolink:NamedThing oxo seco-steroid monarch-merged.owl owl:Class CHEBI:48070 biolink:NamedThing 12-oxo steroid monarch-merged.owl owl:Class CHEBI:131647 biolink:NamedThing androstane sulfate monarch-merged.owl owl:Class CHEBI:131737 biolink:NamedThing androstane ester monarch-merged.owl owl:Class CHEBI:16158 biolink:NamedThing steroid sulfate monarch-merged.owl owl:Class CHEBI:137385 biolink:NamedThing (24S)-hydroxycholesterol 24-sulfate monarch-merged.owl owl:Class CHEBI:137388 biolink:NamedThing (24S)-hydroxycholesterol 3-sulfate monarch-merged.owl owl:Class CHEBI:137389 biolink:NamedThing (24S)-hydroxycholesterol 3,24-disulfate monarch-merged.owl owl:Class CHEBI:138026 biolink:NamedThing 5alpha-dihydrotestosterone sulfate monarch-merged.owl owl:Class CHEBI:16473 biolink:NamedThing cortisol 21-sulfate monarch-merged.owl owl:Class CHEBI:17864 biolink:NamedThing taurolithocholic acid sulfate monarch-merged.owl owl:Class CHEBI:35420 biolink:NamedThing pregnenolone sulfate monarch-merged.owl owl:Class CHEBI:35421 biolink:NamedThing lithocholic acid sulfate monarch-merged.owl owl:Class CHEBI:41321 biolink:NamedThing cholesterol sulfate monarch-merged.owl owl:Class CHEBI:4866 biolink:NamedThing 17beta-estradiol 3-sulfate monarch-merged.owl owl:Class CHEBI:50107 biolink:NamedThing 5beta-scymnol sulfate monarch-merged.owl owl:Class CHEBI:50109 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5alpha-cholan-24-yl sulfate monarch-merged.owl owl:Class CHEBI:9347 biolink:NamedThing sulfoglycolithocholic acid monarch-merged.owl owl:Class CHEBI:131650 biolink:NamedThing phosphinomethylisomalate(3-) monarch-merged.owl owl:Class CHEBI:131651 biolink:NamedThing 2-(phosphinatomethylidene)succinate(3-) monarch-merged.owl owl:Class CHEBI:131922 biolink:NamedThing ethylenediaminediacetate(1-) monarch-merged.owl owl:Class CHEBI:132917 biolink:NamedThing 2-isopropylmalate monarch-merged.owl owl:Class CHEBI:132938 biolink:NamedThing ethylmalonate A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of ethylmalonic acid. monarch-merged.owl ethylmalonic acid anion|ethylmalonate anion chebi_ontology owl:Class CHEBI:132942 biolink:NamedThing quinolinate monarch-merged.owl owl:Class CHEBI:132950 biolink:NamedThing tartrate monarch-merged.owl owl:Class CHEBI:132951 biolink:NamedThing maleate monarch-merged.owl owl:Class CHEBI:132952 biolink:NamedThing oxalate A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of oxalic acid. monarch-merged.owl ethanedioic acid anion|oxalate anions|oxalic acid anions|oxalate anion|oxalates|ethanedioic acid anions|oxalic acid anion chebi_ontology owl:Class CHEBI:132953 biolink:NamedThing suberate monarch-merged.owl owl:Class CHEBI:132954 biolink:NamedThing sebacate A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of sebacic acid. monarch-merged.owl sebacate anion|sebacate anions|sebacates|sebacic acid anions|decanedioic acid anion|sebacic acid anion|decanedioic acid anions chebi_ontology owl:Class CHEBI:132955 biolink:NamedThing azelaate monarch-merged.owl owl:Class CHEBI:132961 biolink:NamedThing methylsuccinate A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of 3-methylsuccinic acid. monarch-merged.owl methylsuccinates|2-methylbutanedioic acid anions|2-methylbutanedioic acid anion|methylsuccinate anion|methylsuccinic acid anion|methylsuccinic acid anions chebi_ontology owl:Class CHEBI:133513 biolink:NamedThing 3-methylglutaconate anion monarch-merged.owl owl:Class CHEBI:133773 biolink:NamedThing pimelate monarch-merged.owl owl:Class CHEBI:136541 biolink:NamedThing (R)-2-(phosphonomethyl)malate(3-) monarch-merged.owl owl:Class CHEBI:22289 biolink:NamedThing aldaric acid anion monarch-merged.owl owl:Class CHEBI:24329 biolink:NamedThing glutarate A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of glutaric acid. monarch-merged.owl glutaric acid anion|glutarate anion|glutarates chebi_ontology owl:Class CHEBI:24711 biolink:NamedThing hydroxymalonate monarch-merged.owl owl:Class CHEBI:25115 biolink:NamedThing malate monarch-merged.owl owl:Class CHEBI:26806 biolink:NamedThing succinate monarch-merged.owl owl:Class CHEBI:35695 biolink:NamedThing dicarboxylic acid monoanion Any dicarboxylic acid anion that is a monoanion obtained by the deprotonation of only one of the carboxy groups of the dicarboxylic acid. monarch-merged.owl dicarboxylic acid monoanions chebi_ontology owl:Class CHEBI:57251 biolink:NamedThing (3S)-3-hydroxy-L-aspartate(1-) monarch-merged.owl owl:Class CHEBI:57462 biolink:NamedThing leukotriene E4(1-) monarch-merged.owl owl:Class CHEBI:57474 biolink:NamedThing (R)-S-lactoylglutathionate(1-) monarch-merged.owl owl:Class CHEBI:57639 biolink:NamedThing 4-(L-alanin-3-yl)-2-hydroxy-cis,cis-muconate 6-semialdehyde(1-) monarch-merged.owl owl:Class CHEBI:57710 biolink:NamedThing 5,12-dihydroxanthommatin(1-) monarch-merged.owl owl:Class CHEBI:57788 biolink:NamedThing isonocardicin A(1-) monarch-merged.owl owl:Class CHEBI:57976 biolink:NamedThing 2-(carboxylatomethyl)-5-oxo-2,5-dihydrofuran-2-ide-3-carboxylate monarch-merged.owl owl:Class CHEBI:58126 biolink:NamedThing porphobilinogen(1-) Conjugate base of porphobilinogen arising from deprotonation of the two carboxy groups and protonation of the amino group; major species at pH 7.3. monarch-merged.owl 3-[5-(azaniumylmethyl)-4-(carboxylatomethyl)-1H-pyrrol-3-yl]propanoate|porphobilinogen|porphobilinogen anion -1 C10H13N2O4 InChI=1S/C10H14N2O4/c11-4-8-7(3-10(15)16)6(5-12-8)1-2-9(13)14/h5,12H,1-4,11H2,(H,13,14)(H,15,16)/p-1 QSHWIQZFGQKFMA-UHFFFAOYSA-M 225.22120 225.08808 [NH3+]Cc1[nH]cc(CCC([O-])=O)c1CC([O-])=O chebi_ontology owl:Class CHEBI:58180 biolink:NamedThing L-arogenate(1-) monarch-merged.owl owl:Class CHEBI:58196 biolink:NamedThing (3R)-3-hydroxy-L-aspartate(1-) monarch-merged.owl owl:Class CHEBI:58584 biolink:NamedThing 20-hydroxy-leukotriene E4(1-) monarch-merged.owl owl:Class CHEBI:58790 biolink:NamedThing 3-(1-carboxylatovinyloxy)anthranilate monarch-merged.owl owl:Class CHEBI:58934 biolink:NamedThing 2,2'-iminodipropanoate(1-) monarch-merged.owl owl:Class CHEBI:60894 biolink:NamedThing (3S)-3-hydroxy-D-aspartate(1-) monarch-merged.owl owl:Class CHEBI:60898 biolink:NamedThing (3R)-3-hydroxy-D-aspartate(1-) monarch-merged.owl owl:Class CHEBI:90158 biolink:NamedThing N-carbamoylaspartate(2-) monarch-merged.owl owl:Class CHEBI:91020 biolink:NamedThing actinorhodin(3-) monarch-merged.owl owl:Class CHEBI:91181 biolink:NamedThing 2-phosphinomethylmalate(3-) monarch-merged.owl owl:Class CHEBI:131652 biolink:NamedThing cholestanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:132977 biolink:NamedThing 7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:132978 biolink:NamedThing 12alpha-hydroxy-3-oxochola-4,6-dien-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136698 biolink:NamedThing 3-oxochenodeoxycholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136700 biolink:NamedThing 3-oxocholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136701 biolink:NamedThing 3-oxodeoxycholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136703 biolink:NamedThing 3-oxocholan-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136759 biolink:NamedThing (22E)-3-oxochola-4,22-dien-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:137663 biolink:NamedThing allocholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:137664 biolink:NamedThing allodeoxycholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:137668 biolink:NamedThing beta-muricholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:137679 biolink:NamedThing ursodeoxycholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138842 biolink:NamedThing 3alpha-hydroxy bile acid CoA thioester(4-) monarch-merged.owl owl:Class CHEBI:138843 biolink:NamedThing 3-oxo bile acid CoA thioester(4-) monarch-merged.owl owl:Class CHEBI:140634 biolink:NamedThing 3-oxochol-4,6-dien-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:140635 biolink:NamedThing 12alpha-hydroxy-3-oxochol-4-en-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:140636 biolink:NamedThing 7alpha-hydroxy-3-oxochol-4-en-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:140637 biolink:NamedThing 7beta-hydroxy-3-oxochol-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:140638 biolink:NamedThing 7beta-hydroxy-3-oxochol-4-en-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57373 biolink:NamedThing choloyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58507 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-24-oxo-5beta-cholestan-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58752 biolink:NamedThing (25R)-3alpha,7alpha-dihydroxy-5beta-cholestan-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58810 biolink:NamedThing deoxycholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:59807 biolink:NamedThing (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestan-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:59879 biolink:NamedThing (24E)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-en-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62989 biolink:NamedThing chenodeoxycholoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:63001 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77251 biolink:NamedThing (25S)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83783 biolink:NamedThing (25S)-3beta-hydroxy-5-cholesten-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83792 biolink:NamedThing 3-oxo-23,24-bisnorchol-4-en-22-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83793 biolink:NamedThing 3-oxo-23,24-bisnorchola-1,4-dien-22-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83794 biolink:NamedThing 3-hydroxy-9-oxo-9,10-seco-23,24-bisnorchola-1,3,5(10)-trien-22-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83819 biolink:NamedThing (25S)-3-oxocholest-4-en-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85547 biolink:NamedThing 9alpha-hydroxy-3-oxo-23,24-bisnorchola-1,4-dien-22-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85548 biolink:NamedThing 9alpha-hydroxy-3-oxo-23,24-bisnorchol-4-en-22-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86014 biolink:NamedThing 3,22-dioxochol-4-en-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86018 biolink:NamedThing 3beta-hydroxychol-5-en-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86020 biolink:NamedThing 20-methyl-3-oxopregna-4,17-dien-21-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86028 biolink:NamedThing 17-hydroxy-3-oxopregn-4-en-20-carboxy-CoA(4-) monarch-merged.owl owl:Class CHEBI:86037 biolink:NamedThing 3beta-hydroxychola-5,22-dien-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86412 biolink:NamedThing 3-oxochol-4-en-24-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86414 biolink:NamedThing 3-oxocholesta-4,24-dien-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87700 biolink:NamedThing (24E)-3alpha,7alpha-dihydroxy-5beta-cholest-24-en-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87702 biolink:NamedThing (24R,25R)-3alpha,7alpha,24-trihydroxy-5beta-cholestan-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87704 biolink:NamedThing 3alpha,7alpha-dihydroxy-24-oxo-5beta-cholestan-26-oyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:13166 biolink:NamedThing Sec-tRNA(Sec) monarch-merged.owl owl:Class CHEBI:2651 biolink:NamedThing alpha-aminoacyl-tRNA monarch-merged.owl owl:Class CHEBI:13170 biolink:NamedThing Ser-tRNA(Sec) monarch-merged.owl owl:Class CHEBI:13253 biolink:NamedThing Asp-tRNA(Asx) monarch-merged.owl owl:Class CHEBI:13346 biolink:NamedThing Glu-tRNA(Glx) monarch-merged.owl owl:Class CHEBI:16047 biolink:NamedThing Lys-tRNA(Lys) monarch-merged.owl owl:Class CHEBI:16624 biolink:NamedThing Leu-tRNA(Leu) monarch-merged.owl owl:Class CHEBI:16635 biolink:NamedThing Met-tRNA(Met) monarch-merged.owl owl:Class CHEBI:17119 biolink:NamedThing fMet-tRNA(fMet) monarch-merged.owl owl:Class CHEBI:17732 biolink:NamedThing Ala-tRNA(Ala) monarch-merged.owl owl:Class CHEBI:18366 biolink:NamedThing Arg-tRNA(Arg) monarch-merged.owl owl:Class CHEBI:29152 biolink:NamedThing Cys-tRNA(Cys) monarch-merged.owl owl:Class CHEBI:29153 biolink:NamedThing Phe-tRNA(Phe) monarch-merged.owl owl:Class CHEBI:29154 biolink:NamedThing Pro-tRNA(Pro) monarch-merged.owl owl:Class CHEBI:29155 biolink:NamedThing His-tRNA(His) monarch-merged.owl owl:Class CHEBI:29156 biolink:NamedThing Gly-tRNA(Gly) monarch-merged.owl owl:Class CHEBI:29159 biolink:NamedThing Trp-tRNA(Trp) monarch-merged.owl owl:Class CHEBI:29160 biolink:NamedThing Ile-tRNA(Ile) monarch-merged.owl owl:Class CHEBI:29161 biolink:NamedThing Tyr-tRNA(Tyr) monarch-merged.owl owl:Class CHEBI:29162 biolink:NamedThing Ser-tRNA(Ser) monarch-merged.owl owl:Class CHEBI:29163 biolink:NamedThing Thr-tRNA(Thr) monarch-merged.owl owl:Class CHEBI:29164 biolink:NamedThing Val-tRNA(Val) monarch-merged.owl owl:Class CHEBI:29166 biolink:NamedThing Gln-tRNA(Gln) monarch-merged.owl owl:Class CHEBI:29265 biolink:NamedThing Asn-tRNA(Asn) monarch-merged.owl owl:Class CHEBI:48621 biolink:NamedThing Sep-tRNA(Sec) monarch-merged.owl owl:Class CHEBI:9100 biolink:NamedThing Sem-tRNA(Met) monarch-merged.owl owl:Class CHEBI:131698 biolink:NamedThing pregnane sterol monarch-merged.owl owl:Class CHEBI:167108 biolink:NamedThing pregnane conjugate monarch-merged.owl owl:Class CHEBI:131703 biolink:NamedThing stigmastane sterol monarch-merged.owl owl:Class CHEBI:138130 biolink:NamedThing Delta(7)-sterol monarch-merged.owl owl:Class CHEBI:138131 biolink:NamedThing Delta(5),Delta(7)-sterol Any sterol containing two double bonds between positions 5-6 and 7-8. monarch-merged.owl a Delta(5),Delta(7)-sterol 0 C19H27OR 271.418 271.20619 C12C(C3C(C(CC3)*)(C)CC1)=CC=C4C2(CCC(C4)O)C MetaCyc:Delta5-Delta7-Steroids chebi_ontology owl:Class CHEBI:26125 biolink:NamedThing phytosterols Sterols similar to cholesterol which occur in plants and vary only in carbon side chains and/or presence or absence of a double bond. monarch-merged.owl Wikipedia:Phytosterol chebi_ontology owl:Class CHEBI:35347 biolink:NamedThing 3alpha-sterol monarch-merged.owl owl:Class CHEBI:131699 biolink:NamedThing EC 2.7.7.7 (DNA-directed DNA polymerase) inhibitor A DNA polymerase inhibitor that interferes with the action of a DNA-directed DNA polymerase (EC 2.7.7.7). monarch-merged.owl DNA polymerase beta inhibitor|deoxyribonucleate nucleotidyltransferase inhibitors|DNA duplicase inhibitors|Klenow fragment inhibitors|deoxyribonucleic polymerase inhibitors|DNA polymerase III inhibitors|DNA nucleotidyltransferase inhibitor|DNA polymerase gamma inhibitor|deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) inhibitors|DNA nucleotidyltransferase (DNA-directed) inhibitors|deoxyribonucleic polymerase inhibitor|EC 2.7.7.7 inhibitors|Taq DNA polymerase inhibitor|deoxyribonucleic polymerase I inhibitors|deoxynucleate polymerase inhibitors|deoxyribonucleic acid polymerase inhibitor|deoxynucleate polymerase inhibitor|Taq DNA polymerase inhibitors|DNA nucleotidyltransferase inhibitors|deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) inhibitor|DNA polymerase III inhibitor|EC 2.7.7.7 (DNA-directed DNA polymerase) inhibitors|DNA-dependent DNA polymerase inhibitor|sequenase inhibitor|DNA polymerase inhibitors|DNA polymerase I inhibitors|deoxyribonucleic polymerase I inhibitor|deoxyribonucleic acid polymerase inhibitors|EC 2.7.7.7 inhibitor|duplicase inhibitor|DNA nucleotidyltransferase (DNA-directed) inhibitor|DNA polymerase II inhibitors|DNA polymerase II inhibitor|DNA-directed DNA polymerase (EC 2.7.7.7) inhibitors|Klenow fragment inhibitor|DNA polymerase alpha inhibitor|DNA duplicase inhibitor|DNA polymerase I inhibitor|deoxyribonucleate nucleotidyltransferase inhibitor|Tca DNA polymerase inhibitor|DNA-directed DNA polymerase (EC 2.7.7.7) inhibitor|DNA polymerase inhibitor|sequenase inhibitors|deoxyribonucleic acid duplicase inhibitors|DNA polymerase beta inhibitors|DNA polymerase gamma inhibitors|DNA replicase inhibitor|Tca DNA polymerase inhibitors|deoxyribonucleic duplicase inhibitor|DNA polymerase alpha inhibitors|Taq Pol I inhibitor|deoxyribonucleic duplicase inhibitors|Taq Pol I inhibitors|duplicase inhibitors|DNA replicase inhibitors|DNA-dependent DNA polymerase inhibitors|deoxyribonucleic acid duplicase inhibitor owl:Class CHEBI:38234 biolink:NamedThing DNA polymerase inhibitor Any inhibitor of a DNA polymerase. monarch-merged.owl owl:Class CHEBI:170010 biolink:NamedThing EC 2.7.7.48 (RNA-directed RNA polymerase) inhibitor monarch-merged.owl owl:Class CHEBI:59897 biolink:NamedThing EC 2.7.7.49 (RNA-directed DNA polymerase) inhibitor monarch-merged.owl owl:Class CHEBI:131701 biolink:NamedThing poly(ethylene terephthalate)(1-) monarch-merged.owl owl:Class CHEBI:131728 biolink:NamedThing [Glu(-Cys)]n-Gly(1-) monarch-merged.owl owl:Class CHEBI:136820 biolink:NamedThing RNA polyanion 2',3'-cyclic phosphate monarch-merged.owl owl:Class CHEBI:136821 biolink:NamedThing RNA polyanion nucleotide 2'-phosphate monarch-merged.owl owl:Class CHEBI:140395 biolink:NamedThing poly(nucleoside 5'-monophosphate) polyanion monarch-merged.owl owl:Class CHEBI:140572 biolink:NamedThing heparan sulfate alpha-D-N-sulfoglucosamine polyanion monarch-merged.owl owl:Class CHEBI:140604 biolink:NamedThing heparan sulfate alpha-D-glucosaminide 6-sulfate polyanion monarch-merged.owl owl:Class CHEBI:140626 biolink:NamedThing RNA(n)-3'-adenine ribonucleotide polyanion monarch-merged.owl owl:Class CHEBI:140627 biolink:NamedThing RNA(n)-3'-uridine ribonucleotide polyanion monarch-merged.owl owl:Class CHEBI:140646 biolink:NamedThing poly(2,5-ethylene furandicarboxylate)(1-) monarch-merged.owl owl:Class CHEBI:157750 biolink:NamedThing heparan sulfate polyanion A carbohydrate acid derivative anion that is a polyanionic form of heparan sulfate arising from global deprotonation of the carboxy and N-sulfo groups; major species at pH 7.3. monarch-merged.owl heparan sulfate group -4 (C12H15NO20S3)n 0.0 0.0 chebi_ontology owl:Class CHEBI:58187 biolink:NamedThing alginate monarch-merged.owl owl:Class CHEBI:58388 biolink:NamedThing heparan sulfate alpha-D-glucosaminide polyanion monarch-merged.owl owl:Class CHEBI:61442 biolink:NamedThing tetrahydrofolyl-poly(glutamate) polymer monarch-merged.owl owl:Class CHEBI:61444 biolink:NamedThing gamma-poly(glutamate) polymer monarch-merged.owl owl:Class CHEBI:61469 biolink:NamedThing polyanionic polymer A polymer, composed of polyanion macromolecules. monarch-merged.owl polyanion|polyanions chebi_ontology owl:Class CHEBI:70974 biolink:NamedThing heparan sulfate N-acetyl-alpha-D-glucosaminide polyanion monarch-merged.owl owl:Class CHEBI:70975 biolink:NamedThing heparan sulfate alpha-D-glucosaminide 3-sulfate polyanion monarch-merged.owl owl:Class CHEBI:83400 biolink:NamedThing RNA polyanion monarch-merged.owl owl:Class CHEBI:83828 biolink:NamedThing DNA polyanion monarch-merged.owl owl:Class CHEBI:131704 biolink:NamedThing 4-[(2-hydroxyethoxy)carbonyl]benzoate monarch-merged.owl owl:Class CHEBI:131706 biolink:NamedThing (2Z,4S,5R)-2-amino-4,5,6-trihydroxyhex-2-enoic acid zwitterion monarch-merged.owl owl:Class CHEBI:35238 biolink:NamedThing amino acid zwitterion The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group. monarch-merged.owl amino acid zwitterion chebi_ontology owl:Class CHEBI:131919 biolink:NamedThing nocardicin G zwitterion monarch-merged.owl owl:Class CHEBI:136599 biolink:NamedThing 3-amino-D-alanine zwitterion monarch-merged.owl owl:Class CHEBI:138478 biolink:NamedThing N(5)-methyl-N(2)-[(3R)-3-(acyloxy)acyl]-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:138480 biolink:NamedThing N(5),N(5)-dimethyl-N(2)-[(3R)-3-(acyloxy)acyl]-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:138482 biolink:NamedThing N(2)-[(3R)-hydroxy-acyl]-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:139171 biolink:NamedThing N(2)-[(3R)-3-(2-hydroxyacyloxy)acyl]-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:140347 biolink:NamedThing substituted beta-amino acid zwitterion monarch-merged.owl owl:Class CHEBI:140641 biolink:NamedThing rhizobitoxine(1+) monarch-merged.owl owl:Class CHEBI:140642 biolink:NamedThing dihydrorhizobitoxine monarch-merged.owl owl:Class CHEBI:140663 biolink:NamedThing N(2)-[(3R)-3-(acyloxy)acyl]-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:141610 biolink:NamedThing 3-hydroxy-D-kynurenine zwitterion monarch-merged.owl owl:Class CHEBI:142409 biolink:NamedThing S-alkyl-L-cysteine S-oxide zwitterion monarch-merged.owl owl:Class CHEBI:142590 biolink:NamedThing 3-aminoisobutanoic acid zwitterion Zwitterionic form of 3-aminoisobutyric acid arising from migration of a proton from the carboxy group to the amino group; major species at pH 7.3. monarch-merged.owl 3-ammonio-2-methylpropanoate|3-azaniumyl-2-methylpropanoate|3-aminoisobutanoate 0 C4H9NO2 InChI=1S/C4H9NO2/c1-3(2-5)4(6)7/h3H,2,5H2,1H3,(H,6,7) QCHPKSFMDHPSNR-UHFFFAOYSA-N 103.120 103.06333 C(C(C)C[NH3+])([O-])=O chebi_ontology owl:Class CHEBI:142854 biolink:NamedThing (2R)-glufosinate zwitterion monarch-merged.owl owl:Class CHEBI:142856 biolink:NamedThing glufosinate-P zwitterion monarch-merged.owl owl:Class CHEBI:149689 biolink:NamedThing D-dopa zwitterion An amino acid zwitterion obtained from the transfer of a proton from the carboxy group to the amino group of D-dopa. Major microspecies at pH 7.3. monarch-merged.owl (2R)-2-ammonio-3-(3,4-dihydroxyphenyl)propanoate|(2R)-2-azaniumyl-3-(3,4-dihydroxyphenyl)propanoate|D-dopa owl:Class CHEBI:149759 biolink:NamedThing 2-methyl-L-serine zwitterion monarch-merged.owl owl:Class CHEBI:150018 biolink:NamedThing 3-aminobutanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:305790 biolink:NamedThing thyroxine zwitterion The amino acid zwitterion formed from thyroxine by transfer of a proton from the carboxy group to the amino group. Major species at pH 7.3. monarch-merged.owl thyroxine|2-Amino-3-[4-(4-hydroxy-3,5-diiodo-phenoxy)-3,5-diiodo-phenyl]-propionate|(2S)-2-azaniumyl-3-[4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodophenyl]propanoate 0 C15H11I4NO4 InChI=1S/C15H11I4NO4/c16-8-4-7(5-9(17)13(8)21)24-14-10(18)1-6(2-11(14)19)3-12(20)15(22)23/h1-2,4-5,12,21H,3,20H2,(H,22,23) XUIIKFGFIJCVMT-UHFFFAOYSA-N 776.87000 776.68669 [NH3+]C(Cc1cc(I)c(Oc2cc(I)c(O)c(I)c2)c(I)c1)C([O-])=O chebi_ontology owl:Class CHEBI:35237 biolink:NamedThing cysteine zwitterion monarch-merged.owl cysteine zwitterion|2-ammonio-3-sulfanylpropanoate|2-ammonio-3-mercaptopropanoate|(+)H3N-CH(CH2SH)-COO(-) 0 C3H7NO2S InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6) XUJNEKJLAYXESH-UHFFFAOYSA-N 121.15922 121.01975 [NH3+]C(CS)C([O-])=O Gmelin:49992 chebi_ontology owl:Class CHEBI:35243 biolink:NamedThing serine zwitterion An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amnio group of serine. monarch-merged.owl serine zwitterion|2-ammonio-3-hydroxypropanoate 0 C3H7NO3 InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7) MTCFGRXMJLQNBG-UHFFFAOYSA-N 105.09262 105.04259 [NH3+]C(CO)C([O-])=O Gmelin:2060272|Beilstein:3935647 chebi_ontology owl:Class CHEBI:35492 biolink:NamedThing cystine zwitterion An amino acid zwitterion that is the tautomer of cystine. monarch-merged.owl 3,3'-disulfanediylbis(2-ammoniopropanoate)|3,3'-dithiobis(2-ammoniopropanoate) 0 C6H12N2O4S2 InChI=1S/C6H12N2O4S2/c7-3(5(9)10)1-13-14-2-4(8)6(11)12/h3-4H,1-2,7-8H2,(H,9,10)(H,11,12) LEVWYRKDKASIDU-UHFFFAOYSA-N 240.30256 240.02385 [NH3+]C(CSSCC([NH3+])C([O-])=O)C([O-])=O Gmelin:51007 chebi_ontology owl:Class CHEBI:356010 biolink:NamedThing 5-aminopentanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:356416 biolink:NamedThing 5-ammoniolevulinate The zwitterion formed from 5-aminolevulinic acid by transfer of a proton from the carboxy group to the amino group. It is the major species present at physiological pH. monarch-merged.owl 5-aminolevulinate|5-azaniumyl-4-oxopentanoate|5-ammonio-4-oxopentanoate|5-ammonio-4-oxovalerate 0 C5H9NO3 InChI=1S/C5H9NO3/c6-3-4(7)1-2-5(8)9/h1-3,6H2,(H,8,9) ZGXJTSGNIOSYLO-UHFFFAOYSA-N 131.12990 131.05824 [NH3+]CC(=O)CCC([O-])=O PMID:14667225 chebi_ontology owl:Class CHEBI:405237 biolink:NamedThing L-canavanine zwitterion monarch-merged.owl owl:Class CHEBI:48306 biolink:NamedThing 2-aminobut-2-enoic acid zwitterion monarch-merged.owl owl:Class CHEBI:533015 biolink:NamedThing 3,3',5-triiodo-L-thyronine zwitterion The amino acid zwitterion formed from 3,3',5-triiodo-L-thyronine by tranfer of a proton from the carboxy group to the amino group. It is the major species at pH 7.3. monarch-merged.owl (S)-2-Amino-3-[4-(4-hydroxy-3-iodo-phenoxy)-3,5-diiodo-phenyl]-propionic acid|3,3',5-triiodo-L-thyronine|(2S)-2-azaniumyl-3-[4-(4-hydroxy-3-iodophenoxy)-3,5-diiodophenyl]propanoate 0 C15H12I3NO4 InChI=1S/C15H12I3NO4/c16-9-6-8(1-2-13(9)20)23-14-10(17)3-7(4-11(14)18)5-12(19)15(21)22/h1-4,6,12,20H,5,19H2,(H,21,22)/t12-/m0/s1 AUYYCJSJGJYCDS-LBPRGKRZSA-N 650.97350 650.79004 [NH3+][C@@H](Cc1cc(I)c(Oc2ccc(O)c(I)c2)c(I)c1)C([O-])=O MetaCyc:CPD-10813 chebi_ontology owl:Class CHEBI:57261 biolink:NamedThing 3,3',5'-triiodo-L-thyronine zwitterion monarch-merged.owl owl:Class CHEBI:57264 biolink:NamedThing 4-fluoro-L-threonine zwitterion monarch-merged.owl owl:Class CHEBI:57300 biolink:NamedThing clavaminic acid zwitterion monarch-merged.owl owl:Class CHEBI:57301 biolink:NamedThing dihydroclavaminic acid zwitterion monarch-merged.owl owl:Class CHEBI:57302 biolink:NamedThing proclavaminic acid zwitterion monarch-merged.owl owl:Class CHEBI:57304 biolink:NamedThing N(2)-(2-carboxyethyl)-L-arginine dizwitterion monarch-merged.owl owl:Class CHEBI:57305 biolink:NamedThing glycine zwitterion An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of glycine. monarch-merged.owl 2-azaniumylacetate|glycine 0 C2H5NO2 InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5) DHMQDGOQFOQNFH-UHFFFAOYSA-N 75.06660 75.03203 [NH3+]CC([O-])=O Gmelin:1807|MetaCyc:GLY chebi_ontology owl:Class CHEBI:57427 biolink:NamedThing L-leucine zwitterion monarch-merged.owl owl:Class CHEBI:57428 biolink:NamedThing (3R)-beta-leucine zwitterion monarch-merged.owl owl:Class CHEBI:57476 biolink:NamedThing L-homoserine zwitterion monarch-merged.owl owl:Class CHEBI:57485 biolink:NamedThing carnosine zwitterion Zwitterionic form of carnosine. monarch-merged.owl carnosine|N(alpha)-(beta-alaniniumyl)-L-histidinate|(2S)-2-[(3-azaniumylpropanoyl)amino]-3-(1H-imidazol-4-yl)propanoate 0 C9H14N4O3 InChI=1S/C9H14N4O3/c10-2-1-8(14)13-7(9(15)16)3-6-4-11-5-12-6/h4-5,7H,1-3,10H2,(H,11,12)(H,13,14)(H,15,16)/t7-/m0/s1 CQOVPNPJLQNMDC-ZETCQYMHSA-N 226.23250 226.10659 [NH3+]CCC(=O)N[C@@H](Cc1c[nH]cn1)C([O-])=O Gmelin:397437|MetaCyc:CARNOSINE chebi_ontology owl:Class CHEBI:57501 biolink:NamedThing (S)-4-amino-5-oxopentanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:57504 biolink:NamedThing L-dopa zwitterion An amino acid zwitterion obtained from the transfer of a proton from the carboxy group to the amino group of L-dopa. Major microspecies at pH 7.3. monarch-merged.owl (2S)-2-ammonio-3-(3,4-dihydroxyphenyl)propanoate|L-dopa|(2S)-2-azaniumyl-3-(3,4-dihydroxyphenyl)propanoate owl:Class CHEBI:57532 biolink:NamedThing 8-amino-7-oxononanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:57543 biolink:NamedThing 3-(uracil-1-yl)-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:57565 biolink:NamedThing serine phosphoethanolamine dizwitterion monarch-merged.owl owl:Class CHEBI:57585 biolink:NamedThing discadenine zwitterion monarch-merged.owl owl:Class CHEBI:57594 biolink:NamedThing O-carbamoyl-L-serine zwitterion monarch-merged.owl owl:Class CHEBI:57595 biolink:NamedThing L-histidine zwitterion monarch-merged.owl owl:Class CHEBI:57609 biolink:NamedThing (2S,6S)-2,6-diaminopimelic acid dizwitterion monarch-merged.owl owl:Class CHEBI:57610 biolink:NamedThing N(alpha),N(alpha)-dimethyl-L-histidine zwitterion monarch-merged.owl owl:Class CHEBI:57630 biolink:NamedThing gamma-amino-beta-hydroxybutyric acid zwitterion Zwitterionic form of gamma-amino-beta-hydroxybutyric acid having an anionic carboxy group and a protonated amino group. monarch-merged.owl 4-ammonio-3-hydroxybutanoate|4-amino-3-hydroxybutanoate|4-azaniumyl-3-hydroxybutanoate 0 C4H9NO3 InChI=1S/C4H9NO3/c5-2-3(6)1-4(7)8/h3,6H,1-2,5H2,(H,7,8) YQGDEPYYFWUPGO-UHFFFAOYSA-N 119.11920 119.05824 [NH3+]CC(O)CC([O-])=O chebi_ontology owl:Class CHEBI:57689 biolink:NamedThing 2,2-dialkylglycine zwitterion monarch-merged.owl owl:Class CHEBI:57690 biolink:NamedThing cis-4-hydroxy-D-proline zwitterion monarch-merged.owl owl:Class CHEBI:57691 biolink:NamedThing N(6)-acyl-L-lysine zwitterion monarch-merged.owl owl:Class CHEBI:57716 biolink:NamedThing O-acetyl-L-homoserine zwitterion monarch-merged.owl owl:Class CHEBI:57721 biolink:NamedThing 3-amino-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:57731 biolink:NamedThing (R)-3-aminoisobutyric acid zwitterion monarch-merged.owl owl:Class CHEBI:57743 biolink:NamedThing L-citrulline zwitterion monarch-merged.owl owl:Class CHEBI:57747 biolink:NamedThing 3-(pyrazol-1-yl)-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:57784 biolink:NamedThing 2-[3-carboxylato-3-(methylammonio)propyl]-L-histidine dizwitterion monarch-merged.owl owl:Class CHEBI:57791 biolink:NamedThing meso-2,6-diaminopimelic acid dizwitterion monarch-merged.owl owl:Class CHEBI:57804 biolink:NamedThing L-serine phosphoethanolamine dizwitterion monarch-merged.owl owl:Class CHEBI:57805 biolink:NamedThing N(2)-acetyl-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:57820 biolink:NamedThing N(6)-hydroxy-L-lysine zwitterion monarch-merged.owl owl:Class CHEBI:57825 biolink:NamedThing L-lombricine dizwitterion monarch-merged.owl owl:Class CHEBI:57826 biolink:NamedThing 6-aminohexanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:57843 biolink:NamedThing L-selenocysteine zwitterion monarch-merged.owl owl:Class CHEBI:57856 biolink:NamedThing S-adenosyl-L-homocysteine zwitterion Zwitterionic form of S-adenosyl-L-homocysteine arising from migration of a proton from the carboxy group to the alpha-amino group; major species at pH 7.3. monarch-merged.owl S-adenosyl-L-homocysteine|5'-S-[(3S)-3-azaniumyl-3-carboxylatopropyl]-5'-thioadenosine 0 C14H20N6O5S InChI=1S/C14H20N6O5S/c15-6(14(23)24)1-2-26-3-7-9(21)10(22)13(25-7)20-5-19-8-11(16)17-4-18-12(8)20/h4-7,9-10,13,21-22H,1-3,15H2,(H,23,24)(H2,16,17,18)/t6-,7+,9+,10+,13+/m0/s1 ZJUKTBDSGOFHSH-WFMPWKQPSA-N 384.41100 384.12159 Nc1ncnc2n(cnc12)[C@@H]1O[C@H](CSCC[C@H]([NH3+])C([O-])=O)[C@@H](O)[C@H]1O MetaCyc:ADENOSYL-HOMO-CYS|Wikipedia:S-Adenosyl-L-homocysteine chebi_ontology owl:Class CHEBI:57869 biolink:NamedThing 6-aminopenicillanic acid zwitterion Zwitterionic form of 6-aminopenicillanic acid arising from migration of a proton from the carboxy group to the 6-amino group; major species at pH 7.3. monarch-merged.owl (2S,5R,6R)-6-azaniumyl-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate|6-aminopenicillanate|6-azaniumyl-2,2-dimethylpenam-3alpha-carboxylate owl:Class CHEBI:57879 biolink:NamedThing 4-methylene-L-glutamine zwitterion monarch-merged.owl owl:Class CHEBI:57889 biolink:NamedThing N(5)-(L-1-carboxyethyl)-L-ornithine dizwitterion monarch-merged.owl owl:Class CHEBI:57901 biolink:NamedThing L-threo-3-phenylserine zwitterion monarch-merged.owl owl:Class CHEBI:57908 biolink:NamedThing N-benzoyl-D-arginine zwitterion monarch-merged.owl owl:Class CHEBI:57924 biolink:NamedThing L-dopaquinone zwitterion monarch-merged.owl owl:Class CHEBI:57926 biolink:NamedThing L-threonine zwitterion Zwitterionic form of L-threonine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3. monarch-merged.owl (2S,3R)-2-azaniumyl-3-hydroxybutanoate|L-threonine|(2S,3R)-2-ammonio-3-hydroxybutanoate 0 C4H9NO3 InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m1/s1 AYFVYJQAPQTCCC-GBXIJSLDSA-N 119.11920 119.05824 C[C@@H](O)[C@H]([NH3+])C([O-])=O Gmelin:2506280 chebi_ontology owl:Class CHEBI:57938 biolink:NamedThing trans-3-hydroxy-L-proline zwitterion monarch-merged.owl owl:Class CHEBI:57956 biolink:NamedThing 3-amino-3-(4-hydroxyphenyl)propanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:57959 biolink:NamedThing L-kynurenine zwitterion monarch-merged.owl owl:Class CHEBI:57966 biolink:NamedThing beta-alanine zwitterion Zwitterionic form of beta-alanine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3. monarch-merged.owl beta-alanine|3-azaniumylpropanoate|3-ammoniopropanoate 0 C3H7NO2 InChI=1S/C3H7NO2/c4-2-1-3(5)6/h1-2,4H2,(H,5,6) UCMIRNVEIXFBKS-UHFFFAOYSA-N 89.09320 89.04768 [NH3+]CCC([O-])=O Gmelin:454332 chebi_ontology owl:Class CHEBI:57974 biolink:NamedThing O-(3-O-D-galactosyl-N-acetyl-beta-D-galactosaminyl)-L-serine zwitterion monarch-merged.owl owl:Class CHEBI:57985 biolink:NamedThing S-inosyl-L-homocysteine zwitterion monarch-merged.owl owl:Class CHEBI:57988 biolink:NamedThing allysine zwitterion Zwitterionic form of allysine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3. monarch-merged.owl allysine|2-azaniumyl-6-oxohexanoate|2-ammonio-6-oxohexanoate 0 C6H11NO3 InChI=1S/C6H11NO3/c7-5(6(9)10)3-1-2-4-8/h4-5H,1-3,7H2,(H,9,10) GFXYTQPNNXGICT-UHFFFAOYSA-N 145.15640 145.07389 [H]C(=O)CCCC([NH3+])C([O-])=O chebi_ontology owl:Class CHEBI:58000 biolink:NamedThing D-glutamine zwitterion monarch-merged.owl owl:Class CHEBI:58031 biolink:NamedThing 2-(3-amino-3-carboxypropyl)-L-histidine dizwitterion monarch-merged.owl owl:Class CHEBI:58047 biolink:NamedThing thiomorpholine-3-carboxylic acid zwitterion monarch-merged.owl owl:Class CHEBI:58048 biolink:NamedThing L-asparagine zwitterion Zwitterionic form of L-asparagine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3. monarch-merged.owl (2S)-2-ammonio-3-carbamoylpropanoate|(2S)-4-amino-2-ammonio-4-oxobutanoate|(2S)-2-azaniumyl-3-carbamoylpropanoate|L-asparagine|(2S)-4-amino-2-azaniumyl-4-oxobutanoate 0 C4H8N2O3 InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m0/s1 DCXYFEDJOCDNAF-REOHCLBHSA-N 132.11790 132.05349 NC(=O)C[C@H]([NH3+])C([O-])=O MetaCyc:ASN chebi_ontology owl:Class CHEBI:58065 biolink:NamedThing homocysteine zwitterion An amino acid zwitterion of homocysteine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3. monarch-merged.owl 2-ammonio-4-sulfanylbutanoate|2-azaniumyl-4-sulfanylbutanoate 0 C4H9NO2S InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7) FFFHZYDWPBMWHY-UHFFFAOYSA-N 135.18500 135.03540 [NH3+]C(CCS)C([O-])=O chebi_ontology owl:Class CHEBI:58066 biolink:NamedThing L-glutamic 5-semialdehyde zwitterion monarch-merged.owl owl:Class CHEBI:58080 biolink:NamedThing N(4)-(beta-N-acetyl-D-glucosaminyl)-L-asparagine zwitterion monarch-merged.owl owl:Class CHEBI:58095 biolink:NamedThing L-phenylalanine zwitterion An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of L-phenylalanine; major species at pH 7.3. monarch-merged.owl (2S)-2-azaniumyl-3-phenylpropanoate|L-phenylalanine|phenylalanine|(2S)-2-ammonio-3-phenylpropanoate owl:Class CHEBI:58111 biolink:NamedThing N(5)-acyl-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:58112 biolink:NamedThing cetraxate zwitterion monarch-merged.owl owl:Class CHEBI:58122 biolink:NamedThing N(6)-acetyl-N(6)-hydroxy-L-lysine zwitterion monarch-merged.owl owl:Class CHEBI:58125 biolink:NamedThing 3-hydroxy-L-kynurenine zwitterion monarch-merged.owl owl:Class CHEBI:58128 biolink:NamedThing N(5)-ethyl-L-glutamine zwitterion monarch-merged.owl owl:Class CHEBI:58132 biolink:NamedThing 3-chloro-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:58148 biolink:NamedThing L-homocitrulline zwitterion monarch-merged.owl owl:Class CHEBI:58161 biolink:NamedThing L-cystathionine dizwitterion monarch-merged.owl owl:Class CHEBI:58163 biolink:NamedThing homocystine zwitterion Dizwitterionic form of homocystine arising from transfer of two protons from the carboxy to the amino groups; major species at pH 7.3. monarch-merged.owl homocystine dizwitterion|4,4'-disulfanediylbis(2-azaniumylbutanoate)|4,4'-disulfanediylbis(2-ammoniobutanoate) 0 C8H16N2O4S2 InChI=1S/C8H16N2O4S2/c9-5(7(11)12)1-3-15-16-4-2-6(10)8(13)14/h5-6H,1-4,9-10H2,(H,11,12)(H,13,14) ZTVZLYBCZNMWCF-UHFFFAOYSA-N 268.356 268.05515 C(C(CCSSCCC(C(=O)[O-])[NH3+])[NH3+])([O-])=O chebi_ontology owl:Class CHEBI:58175 biolink:NamedThing N-methyl-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:58183 biolink:NamedThing 6-amino-2-oxohexanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:58195 biolink:NamedThing S-(5-deoxy-D-ribos-5-yl)-L-homocysteine zwitterion monarch-merged.owl owl:Class CHEBI:58199 biolink:NamedThing L-homocysteine zwitterion monarch-merged.owl owl:Class CHEBI:58200 biolink:NamedThing N(5)-methyl-L-glutamine zwitterion monarch-merged.owl owl:Class CHEBI:58209 biolink:NamedThing 4-(3-methylbut-2-enyl)-L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:58249 biolink:NamedThing (S,S,S)-nicotianamine trizwitterion monarch-merged.owl owl:Class CHEBI:58251 biolink:NamedThing N,N-dimethylglycine zwitterion monarch-merged.owl owl:Class CHEBI:58257 biolink:NamedThing S-(4-bromophenyl)-L-cysteine zwitterion monarch-merged.owl owl:Class CHEBI:58260 biolink:NamedThing N(6)-acetyl-L-lysine zwitterion monarch-merged.owl owl:Class CHEBI:58266 biolink:NamedThing 5-hydroxy-L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:58269 biolink:NamedThing 2-amino-2-deoxy-D-gluconic acid zwitterion monarch-merged.owl owl:Class CHEBI:58275 biolink:NamedThing 2-methylserine zwitterion monarch-merged.owl owl:Class CHEBI:58315 biolink:NamedThing L-tyrosine zwitterion An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of L-tyrosine; major species at pH 7.3. monarch-merged.owl L-tyrosine|(2S)-2-ammonio-3-(4-hydroxyphenyl)propanoate|(2S)-2-azaniumyl-3-(4-hydroxyphenyl)propanoate 0 C9H11NO3 InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/t8-/m0/s1 OUYCCCASQSFEME-QMMMGPOBSA-N 181.18850 181.07389 [NH3+][C@@H](Cc1ccc(O)cc1)C([O-])=O chebi_ontology owl:Class CHEBI:58321 biolink:NamedThing L-allysine zwitterion monarch-merged.owl owl:Class CHEBI:58340 biolink:NamedThing O-acetyl-L-serine zwitterion monarch-merged.owl owl:Class CHEBI:58359 biolink:NamedThing L-glutamine zwitterion monarch-merged.owl owl:Class CHEBI:58360 biolink:NamedThing 1-aminocyclopropanecarboxylic acid zwitterion monarch-merged.owl owl:Class CHEBI:58361 biolink:NamedThing diphthinate monarch-merged.owl owl:Class CHEBI:58468 biolink:NamedThing 3-aminoalanine zwitterion monarch-merged.owl owl:Class CHEBI:58498 biolink:NamedThing 6-acetamido-3-aminohexanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:58499 biolink:NamedThing L-pyrrolysine zwitterion monarch-merged.owl owl:Class CHEBI:58501 biolink:NamedThing 7beta-aminocephalosporanic acid zwitterion monarch-merged.owl owl:Class CHEBI:58506 biolink:NamedThing Ile(5)-angiotensin II dizwitterion monarch-merged.owl owl:Class CHEBI:58523 biolink:NamedThing (5S)-5-amino-3-oxohexanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:58531 biolink:NamedThing Se-methyl-L-selenocysteine zwitterion monarch-merged.owl owl:Class CHEBI:58591 biolink:NamedThing 3-disulfanyl-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:58629 biolink:NamedThing N-formyl-L-kynurenine zwitterion monarch-merged.owl owl:Class CHEBI:58655 biolink:NamedThing (S)-3-aminoisobutyric acid zwitterion monarch-merged.owl owl:Class CHEBI:58713 biolink:NamedThing 7-chloro-L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:58717 biolink:NamedThing S-substituted L-cysteine zwitterion monarch-merged.owl owl:Class CHEBI:58772 biolink:NamedThing L-methionine (S)-S-oxide zwitterion monarch-merged.owl owl:Class CHEBI:58773 biolink:NamedThing L-methionine (R)-S-oxide zwitterion monarch-merged.owl owl:Class CHEBI:58798 biolink:NamedThing N-(6-aminohexanoyl)-6-aminohexanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:58802 biolink:NamedThing 5-amino-2-oxopentanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:58832 biolink:NamedThing dihomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:58833 biolink:NamedThing trihomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:58834 biolink:NamedThing tetrahomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:58835 biolink:NamedThing pentahomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:58836 biolink:NamedThing hexahomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:58850 biolink:NamedThing (3S)-3-hydroxy-L-asparagine zwitterion monarch-merged.owl owl:Class CHEBI:58859 biolink:NamedThing 2-amino-2,3,7-trideoxy-D-lyxo-hept-6-ulosonic acid zwitterion monarch-merged.owl owl:Class CHEBI:58902 biolink:NamedThing beta-L-aspartylhydroxamic acid zwitterion monarch-merged.owl owl:Class CHEBI:58917 biolink:NamedThing (R)-piperazine-2-carboxylic acid zwitterion monarch-merged.owl owl:Class CHEBI:58920 biolink:NamedThing (S)-piperazine-2-carboxylic acid zwitterion monarch-merged.owl owl:Class CHEBI:58922 biolink:NamedThing Ile(5)-angiotensin II (1-7) dizwitterion monarch-merged.owl owl:Class CHEBI:58927 biolink:NamedThing L-lupinic acid zwitterion monarch-merged.owl owl:Class CHEBI:58929 biolink:NamedThing N(4)-acetyl-L-2,4-diaminobutyric acid zwitterion monarch-merged.owl owl:Class CHEBI:59871 biolink:NamedThing D-alpha-amino acid zwitterion Zwitterionic form of a D-alpha-amino acid having an anionic carboxy group and a protonated amino group. monarch-merged.owl D-alpha-amino acid zwitterions|a D-alpha-amino acid 0 C2H4NO2R 74.059 74.02420 [NH3+][C@H]([*])C([O-])=O chebi_ontology owl:Class CHEBI:59888 biolink:NamedThing gamma-aminobutyric acid zwitterion Zwitterionic form of gamma-aminobutyric acid having an anionic carboxy group and a protonated amino group. monarch-merged.owl 4-azaniumylbutanoate|4-ammoniobutanoate|4-aminobutanoate 0 C4H9NO2 InChI=1S/C4H9NO2/c5-3-1-2-4(6)7/h1-3,5H2,(H,6,7) BTCSSZJGUNDROE-UHFFFAOYSA-N 103.11980 103.06333 [NH3+]CCCC([O-])=O Gmelin:1041559 chebi_ontology owl:Class CHEBI:59895 biolink:NamedThing glutathione amide zwitterion monarch-merged.owl owl:Class CHEBI:59896 biolink:NamedThing glutathione amide disulfide dizwitterion monarch-merged.owl owl:Class CHEBI:59898 biolink:NamedThing 3-iodo-L-tyrosine zwitterion monarch-merged.owl owl:Class CHEBI:60039 biolink:NamedThing L-proline zwitterion The zwitterion formed from L-proline by proton transfer from the carboxy group to the ring nitrogen. It is the predominant species at physiological pH. monarch-merged.owl (2S)-pyrrolidinium-2-carboxylate|L-proline 0 C5H9NO2 InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1 ONIBWKKTOPOVIA-BYPYZUCNSA-N 115.13050 115.06333 [O-]C(=O)[C@@H]1CCC[NH2+]1 MetaCyc:PRO CHEBI:58054 chebi_ontology owl:Class CHEBI:60041 biolink:NamedThing cis-3-hydroxy-L-proline zwitterion monarch-merged.owl owl:Class CHEBI:60051 biolink:NamedThing N-formyl-D-kynurenine zwitterion monarch-merged.owl owl:Class CHEBI:60111 biolink:NamedThing N(5)-[amino(hydroxyimino)methyl]-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:60120 biolink:NamedThing (R)-nipecotic acid zwitterion monarch-merged.owl owl:Class CHEBI:60257 biolink:NamedThing N(omega)-methyl-L-arginine zwitterion monarch-merged.owl owl:Class CHEBI:60847 biolink:NamedThing 2,3-dihydro-3-hydroxyanthranilic acid zwitterion monarch-merged.owl owl:Class CHEBI:60860 biolink:NamedThing 6-ammonio-5-oxocyclohex-2-ene-1-carboxylate monarch-merged.owl owl:Class CHEBI:60904 biolink:NamedThing 4-hydroxy-L-threonine zwitterion monarch-merged.owl owl:Class CHEBI:61508 biolink:NamedThing gamma-glutamyl-gamma-aminobutyraldehyde zwitterion monarch-merged.owl owl:Class CHEBI:61512 biolink:NamedThing N(2)-acetyl-L-lysine zwitterion monarch-merged.owl owl:Class CHEBI:61936 biolink:NamedThing gamma-carboxy-L-glutamic acid zwitterion monarch-merged.owl owl:Class CHEBI:62031 biolink:NamedThing polar amino acid zwitterion Zwitterionic form of a polar amino acid having an anionic carboxy group and a protonated amino group. monarch-merged.owl a polar amino acid 0 C2H4NO2R 74.059 74.02420 C(C([O-])=O)(*)[NH3+] MetaCyc:Polar-amino-acids chebi_ontology owl:Class CHEBI:62141 biolink:NamedThing S-[(2E,6E)-farnesyl]-L-cysteine zwitterion monarch-merged.owl owl:Class CHEBI:62226 biolink:NamedThing L-selenocystathionine zwitterion monarch-merged.owl owl:Class CHEBI:62465 biolink:NamedThing O-(3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl)-L-serine zwitterion monarch-merged.owl owl:Class CHEBI:62497 biolink:NamedThing 7-(3-methylbut-2-enyl)-L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:62621 biolink:NamedThing L-selenomethionine zwitterion monarch-merged.owl owl:Class CHEBI:62624 biolink:NamedThing 5-hydroxy-L-kynurenine zwitterion monarch-merged.owl owl:Class CHEBI:63137 biolink:NamedThing 4-hydroxyproline zwitterion The amino acid zwitterion formed from 4-hydroxyproline. monarch-merged.owl 4-hydroxypyrrolidinium-2-carboxylate 0 C5H9NO3 InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9) PMMYEEVYMWASQN-UHFFFAOYSA-N 131.12990 131.05824 OC1C[NH2+]C(C1)C([O-])=O chebi_ontology owl:Class CHEBI:63727 biolink:NamedThing cis-4-hydroxy-L-proline zwitterion monarch-merged.owl owl:Class CHEBI:64554 biolink:NamedThing tryptophan zwitterion An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of tryptophan; major species at pH 7.3. monarch-merged.owl 2-azaniumyl-3-(1H-indol-3-yl)propanoate|2-ammonio-3-(1H-indol-3-yl)propanoate 0 C11H12N2O2 InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15) QIVBCDIJIAJPQS-UHFFFAOYSA-N 204.22520 204.08988 [NH3+]C(Cc1c[nH]c2ccccc12)C([O-])=O chebi_ontology owl:Class CHEBI:64558 biolink:NamedThing methionine zwitterion An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of methionine; major species at pH 7.3. monarch-merged.owl 2-azaniumyl-4-(methylsulfanyl)butanoate|methionine|2-ammonio-4-(methylsulfanyl)butanoate 0 C5H11NO2S InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8) FFEARJCKVFRZRR-UHFFFAOYSA-N 149.21100 149.05105 CSCCC([NH3+])C([O-])=O chebi_ontology owl:Class CHEBI:64791 biolink:NamedThing tetrahydrotyrosine zwitterion monarch-merged.owl owl:Class CHEBI:66882 biolink:NamedThing 4-(methylamino)butyric acid zwitterion monarch-merged.owl owl:Class CHEBI:66884 biolink:NamedThing N-alkylglycine zwitterion An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of any N-alkylglycine; major species at pH 7.3. monarch-merged.owl an N-alkylglycine 0 C2H4NO2R 74.059 74.02420 [O-]C(=O)C[NH2+][*] MetaCyc:N-Alkylglycine|PMID:9989229 chebi_ontology owl:Class CHEBI:66916 biolink:NamedThing alanine zwitterion An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of alanine; major species at pH 7.3. monarch-merged.owl 2-ammoniopropanoate|2-azaniumylpropanoate 0 C3H7NO2 InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6) QNAYBMKLOCPYGJ-UHFFFAOYSA-N 89.09320 89.04768 CC([NH3+])C([O-])=O chebi_ontology owl:Class CHEBI:67248 biolink:NamedThing 4-(3-methylbut-2-enyl)-L-abrine zwitterion monarch-merged.owl owl:Class CHEBI:68527 biolink:NamedThing 3-ammonio-3-phenylpropanoate monarch-merged.owl owl:Class CHEBI:71963 biolink:NamedThing 5-amino-5-deoxy-3-dehydroshikimic acid zwitterion monarch-merged.owl owl:Class CHEBI:73555 biolink:NamedThing 7-(3-amino-3-carboxypropyl)wyosine 5'-monophosphate zwitterion monarch-merged.owl owl:Class CHEBI:73559 biolink:NamedThing 4-demethyl-7-(3-amino-3-carboxypropyl)wyosine 5'-monophosphate zwitterion monarch-merged.owl owl:Class CHEBI:73626 biolink:NamedThing 7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine 5'-monophosphate zwitterion monarch-merged.owl owl:Class CHEBI:73763 biolink:NamedThing 2-[3-carboxylato-3-(dimethylammonio)propyl]-L-histidine dizwitterion monarch-merged.owl owl:Class CHEBI:74158 biolink:NamedThing O-ureido-D-serine zwitterion monarch-merged.owl owl:Class CHEBI:75057 biolink:NamedThing 2-amino-5-chloro-cis,cis-muconate 6-semialdehyde zwitterion monarch-merged.owl owl:Class CHEBI:75204 biolink:NamedThing (S)-3,5-dihydroxyphenylglycine zwitterion monarch-merged.owl owl:Class CHEBI:75879 biolink:NamedThing 4-O-(beta-L-Araf-(1->2)-beta-L-Araf-(1->2)-beta-L-Araf)-cis-L-Hyp zwitterion monarch-merged.owl owl:Class CHEBI:75880 biolink:NamedThing 4-O-(beta-L-Araf)-cis-L-Hyp zwitterion monarch-merged.owl owl:Class CHEBI:75895 biolink:NamedThing N(alpha)-methyl-L-histidine zwitterion monarch-merged.owl owl:Class CHEBI:76042 biolink:NamedThing aromatic amino-acid zwitterion An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any aromatic amino-acid. monarch-merged.owl an aromatic amino-acid|aromatic amino-acid zwitterions 0 C2H4NO2R 74.059 74.02420 [NH3+]C([*])C([O-])=O MetaCyc:Aromatic-Amino-Acids chebi_ontology owl:Class CHEBI:76565 biolink:NamedThing 2-ammonioprop-2-enoate monarch-merged.owl owl:Class CHEBI:76855 biolink:NamedThing 3-(5-oxoisoxazolin-2-yl)-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:76856 biolink:NamedThing 3-(5-oxoisoxazolin-4-yl)-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:76864 biolink:NamedThing (2S,3S)-beta-methylphenylalanine zwitterion monarch-merged.owl owl:Class CHEBI:77587 biolink:NamedThing (2S)-2-acetamido-4-aminobutanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:77634 biolink:NamedThing 2-aminomuconic 6-semialdehyde zwitterion monarch-merged.owl owl:Class CHEBI:77656 biolink:NamedThing 4-oxoproline zwitterion monarch-merged.owl owl:Class CHEBI:77662 biolink:NamedThing L-3-oxoalanine zwitterion monarch-merged.owl owl:Class CHEBI:77689 biolink:NamedThing L-mimosine zwitterion monarch-merged.owl owl:Class CHEBI:78216 biolink:NamedThing alpha,beta-didehydrotryptophan zwitterion monarch-merged.owl owl:Class CHEBI:78239 biolink:NamedThing 3-methyl-L-tyrosine zwitterion monarch-merged.owl owl:Class CHEBI:78241 biolink:NamedThing 5-hydroxy-3-methyl-L-tyrosine zwitterion monarch-merged.owl owl:Class CHEBI:78247 biolink:NamedThing (4S)-4-hydroxy-L-isoleucine zwitterion monarch-merged.owl owl:Class CHEBI:78275 biolink:NamedThing N(5)-hydroxy-L-ornithine zwitterion monarch-merged.owl owl:Class CHEBI:78314 biolink:NamedThing 4-O-dimethylallyl-L-tyrosine zwitterion monarch-merged.owl owl:Class CHEBI:78375 biolink:NamedThing N(5)-phenyl-L-glutamine zwitterion monarch-merged.owl owl:Class CHEBI:78608 biolink:NamedThing alpha-amino acid zwitterion An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3. monarch-merged.owl an alpha-amino acid 0 C2H4NO2R 74.059 74.02420 [NH3+]C([*])C([O-])=O MetaCyc:Alpha-Amino-Acids CHEBI:83409 chebi_ontology owl:Class CHEBI:84813 biolink:NamedThing 4-oxo-L-proline zwitterion monarch-merged.owl owl:Class CHEBI:84913 biolink:NamedThing 3-amino-N-(trans-3-carbamoyloxirane-2-carbonyl)-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:85338 biolink:NamedThing L-alloisoleucine zwitterion monarch-merged.owl owl:Class CHEBI:85420 biolink:NamedThing N-isopropyl-L-glutamine zwitterion monarch-merged.owl owl:Class CHEBI:85421 biolink:NamedThing N-(gamma-L-glutamyl)-L-alaninol zwitterion monarch-merged.owl owl:Class CHEBI:85433 biolink:NamedThing glutamine hydroxamate zwitterion monarch-merged.owl owl:Class CHEBI:85908 biolink:NamedThing 2-methyl-L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:86139 biolink:NamedThing N-methyl-L-alpha-amino acid zwitterion monarch-merged.owl owl:Class CHEBI:87091 biolink:NamedThing 8-amino-3,8-dideoxy-alpha-D-manno-oct-2-ulosonic acid zwitterion monarch-merged.owl owl:Class CHEBI:87840 biolink:NamedThing cis-3-hydroxy-D-proline zwitterion monarch-merged.owl owl:Class CHEBI:87846 biolink:NamedThing 3-hydroxy-O,5-dimethyl-L-tyrosine zwitterion monarch-merged.owl owl:Class CHEBI:131707 biolink:NamedThing (4S,5R)-4,5,6-trihydroxy-2-iminohexanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:27369 biolink:NamedThing zwitterion A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer). monarch-merged.owl compose zwitterionique|zwitteriones|compuestos zwitterionicos|zwitterions|zwitterion|zwitterionic compounds chebi_ontology owl:Class CHEBI:132727 biolink:NamedThing 11a-hydroxytetracycline zwitterion monarch-merged.owl owl:Class CHEBI:133011 biolink:NamedThing oxytetracycline zwitterion monarch-merged.owl owl:Class CHEBI:133012 biolink:NamedThing 5a,11a-dehydrooxytetracycline zwitterion monarch-merged.owl owl:Class CHEBI:133696 biolink:NamedThing desmethylanhydrotetracycline zwitterion monarch-merged.owl owl:Class CHEBI:133697 biolink:NamedThing 4-amino-4-de(dimethylamino)anhydrotetracycline zwitterion monarch-merged.owl owl:Class CHEBI:133928 biolink:NamedThing 2,5-diiminio-3,4-bis(indol-3-yl)hexanedioate monarch-merged.owl owl:Class CHEBI:133929 biolink:NamedThing 3,4-bis(7-chloroindol-3-yl)-2,5-diiminiohexanedioate monarch-merged.owl owl:Class CHEBI:137986 biolink:NamedThing (beta-Asp-Arg)n zwitterion monarch-merged.owl owl:Class CHEBI:138619 biolink:NamedThing D-alanyl-AMP zwitterion monarch-merged.owl owl:Class CHEBI:143890 biolink:NamedThing 2-ammonioethyl (2R)-2,3-dihydroxypropyl phosphate zwitterion monarch-merged.owl owl:Class CHEBI:144645 biolink:NamedThing an 11a-hydroxytetracyline zwitterion monarch-merged.owl owl:Class CHEBI:144940 biolink:NamedThing L-alanyl-AMP zwitterion monarch-merged.owl owl:Class CHEBI:35281 biolink:NamedThing onium betaine Neutral molecules having charge-separated forms with an onium atom which bears no hydrogen atoms and that is not adjacent to the anionic atom. monarch-merged.owl betaines|onium betaines chebi_ontology owl:Class CHEBI:39785 biolink:NamedThing 1-pyrroline-2-carboxylic acid zwitterion monarch-merged.owl owl:Class CHEBI:42626 biolink:NamedThing glycyl-AMP zwitterion monarch-merged.owl owl:Class CHEBI:44400 biolink:NamedThing 2-iminiopropionate monarch-merged.owl owl:Class CHEBI:507393 biolink:NamedThing taurine zwitterion The zwitterion formed from taurine by transfer of a proton from the sulfonyl to the amino group. It is the major species existing at physiological pH. monarch-merged.owl 2-azaniumylethane-1-sulfonate|2-ammonioethanesulfonate|taurine 0 C2H7NO3S InChI=1S/C2H7NO3S/c3-1-2-7(4,5)6/h1-3H2,(H,4,5,6) XOAAWQZATWQOTB-UHFFFAOYSA-N 125.14700 125.01466 [NH3+]CCS([O-])(=O)=O PMID:17765547 chebi_ontology owl:Class CHEBI:57303 biolink:NamedThing deoxyamidinoproclavaminic acid zwitterion monarch-merged.owl owl:Class CHEBI:57418 biolink:NamedThing (2-aminoethyl)phosphonic acid zwitterion monarch-merged.owl owl:Class CHEBI:57486 biolink:NamedThing 4-guanidinobutanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:57522 biolink:NamedThing 12-dehydrotetracycline zwitterion monarch-merged.owl owl:Class CHEBI:57588 biolink:NamedThing phosphatidyl-N-methylethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:57593 biolink:NamedThing 3-guanidinopropanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:57679 biolink:NamedThing hypotaurocyamine zwitterion monarch-merged.owl owl:Class CHEBI:57742 biolink:NamedThing guanidinoacetic acid zwitterion monarch-merged.owl owl:Class CHEBI:57853 biolink:NamedThing hypotaurine zwitterion monarch-merged.owl owl:Class CHEBI:57947 biolink:NamedThing creatine zwitterion Zwitterionic form of creatine arising from transfer of a proton from the carboxy to the guanidino group; major species at pH 7.3. monarch-merged.owl creatine|{[amino(iminio)methyl](methyl)amino}acetate 0 C4H9N3O2 InChI=1S/C4H9N3O2/c1-7(4(5)6)2-3(8)9/h2H2,1H3,(H3,5,6)(H,8,9) CVSVTCORWBXHQV-UHFFFAOYSA-N 131.13320 131.06948 CN(CC([O-])=O)C(N)=[NH2+] MetaCyc:CREATINE chebi_ontology owl:Class CHEBI:57952 biolink:NamedThing sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:57997 biolink:NamedThing 6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol zwitterion monarch-merged.owl owl:Class CHEBI:58032 biolink:NamedThing anhydrotetracycline zwitterion monarch-merged.owl owl:Class CHEBI:58042 biolink:NamedThing guanidinoethyl methyl phosphate zwitterion monarch-merged.owl owl:Class CHEBI:58064 biolink:NamedThing taurocyamine zwitterion monarch-merged.owl owl:Class CHEBI:58082 biolink:NamedThing O-(1->4)-alpha-L-dihydrostreptosylstreptidine 6-phosphate zwitterion monarch-merged.owl owl:Class CHEBI:58170 biolink:NamedThing psychosine sulfate zwitterion monarch-merged.owl owl:Class CHEBI:58445 biolink:NamedThing anserine zwitterion monarch-merged.owl owl:Class CHEBI:58479 biolink:NamedThing N-formimidoylglycine zwitterion monarch-merged.owl owl:Class CHEBI:58489 biolink:NamedThing 5-guanidino-2-oxopentanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:58515 biolink:NamedThing ectoine zwitterion monarch-merged.owl owl:Class CHEBI:58647 biolink:NamedThing amidinoproclavaminic acid zwitterion monarch-merged.owl owl:Class CHEBI:58711 biolink:NamedThing 4-azaniumyl-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate monarch-merged.owl owl:Class CHEBI:58891 biolink:NamedThing 6-(alpha-D-glucosaminyl)-1D-myo-inositol 1,2-cyclic phosphate zwitterion monarch-merged.owl owl:Class CHEBI:59193 biolink:NamedThing 2-iminio-3-(indol-3-yl)propanoate monarch-merged.owl owl:Class CHEBI:59194 biolink:NamedThing 2-iminio-3-(7-chloroindol-3-yl)propionate monarch-merged.owl owl:Class CHEBI:60106 biolink:NamedThing streptidine 6-phosphate zwitterion monarch-merged.owl owl:Class CHEBI:60463 biolink:NamedThing 4-amino-4-deoxy-alpha-L-arabinopyranosyl ditrans,polycis-undecaprenyl phosphate zwitterion monarch-merged.owl owl:Class CHEBI:60466 biolink:NamedThing peptide zwitterion Zwitterionic form of any peptide where, in general, the amino terminus is positively charged and the carboxy terminus is negatively charged. monarch-merged.owl peptide zwitterions 0 C2H4NO2R(C2H2NOR)n chebi_ontology owl:Class CHEBI:60524 biolink:NamedThing 3-O-L-alanyl-1-O-phosphatidylglycerol zwitterion monarch-merged.owl owl:Class CHEBI:61166 biolink:NamedThing D-alanyl-(R)-lactic acid zwitterion monarch-merged.owl owl:Class CHEBI:61185 biolink:NamedThing L-pipecolic acid zwitterion monarch-merged.owl owl:Class CHEBI:64263 biolink:NamedThing 5-guanidino-3-methyl-2-oxopentanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:64427 biolink:NamedThing phosphatidyl-N,N-dimethylethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:64572 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phospho-N,N-dimethylethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:64573 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phospho-N-methylethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:67274 biolink:NamedThing lysophosphatidylethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:68488 biolink:NamedThing alkyl,acyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:71286 biolink:NamedThing 3-nitrotyramine zwitterion monarch-merged.owl owl:Class CHEBI:71365 biolink:NamedThing rifampicin zwitterion monarch-merged.owl owl:Class CHEBI:72823 biolink:NamedThing glycerophosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:73202 biolink:NamedThing ceramide phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:74159 biolink:NamedThing D-cycloserine zwitterion monarch-merged.owl owl:Class CHEBI:74354 biolink:NamedThing 15-demethylaclacinomycin T zwitterion monarch-merged.owl owl:Class CHEBI:76545 biolink:NamedThing 2-iminobutanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:77076 biolink:NamedThing 10-carboxy-13-deoxydaunorubicin zwitterion monarch-merged.owl owl:Class CHEBI:77077 biolink:NamedThing 10-carboxy-13-deoxycarminomycin zwitterion monarch-merged.owl owl:Class CHEBI:77631 biolink:NamedThing 1-piperideine-2-carboxylic acid zwitterion monarch-merged.owl owl:Class CHEBI:77846 biolink:NamedThing dehydroglycine zwitterion monarch-merged.owl owl:Class CHEBI:77906 biolink:NamedThing minocycline zwitterion monarch-merged.owl owl:Class CHEBI:77932 biolink:NamedThing tetracycline zwitterion A zwitterion obtained by transfer of a proton from the 2-hydroxy group to the 1-amino group of tetracycline. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.). monarch-merged.owl (1S,4aS,11S,11aS,12aS)-3-carbamoyl-1-(dimethylazaniumyl)-4a,5,7,11-tetrahydroxy-11-methyl-4,6-dioxo-1,4,4a,6,11,11a,12,12a-octahydrotetracen-2-olate|tetracycline owl:Class CHEBI:77979 biolink:NamedThing aclacinomycin T zwitterion monarch-merged.owl owl:Class CHEBI:77980 biolink:NamedThing aclacinomycin A zwitterion monarch-merged.owl owl:Class CHEBI:77985 biolink:NamedThing aclacinomycin Y zwitterion monarch-merged.owl owl:Class CHEBI:77991 biolink:NamedThing aclacinomycin N zwitterion monarch-merged.owl owl:Class CHEBI:78245 biolink:NamedThing (2-amino-1-hydroxyethyl)phosphonate zwitterion monarch-merged.owl owl:Class CHEBI:78303 biolink:NamedThing aclacinomycin S zwitterion monarch-merged.owl owl:Class CHEBI:78378 biolink:NamedThing 2-deoxy-alpha-L-fucosylaclacinomycin S zwitterion monarch-merged.owl owl:Class CHEBI:85307 biolink:NamedThing heparosan D-glucuronic acid zwitterion monarch-merged.owl owl:Class CHEBI:85308 biolink:NamedThing heparosan L-iduronic acid zwitterion monarch-merged.owl owl:Class CHEBI:85430 biolink:NamedThing 11-deoxy-beta-rhodomycin zwitterion monarch-merged.owl owl:Class CHEBI:90219 biolink:NamedThing gentamycin 2''-phosphate dizwitterion monarch-merged.owl owl:Class CHEBI:131708 biolink:NamedThing N(omega)-(1-hydroxy-2-oxopropyl)-L-arginine residue(1+) monarch-merged.owl owl:Class CHEBI:35415 biolink:NamedThing alpha-amino-acid residue cation monarch-merged.owl owl:Class CHEBI:136911 biolink:NamedThing N-(4-ammoniobutylidene)-L-lysinium(2+) residue monarch-merged.owl owl:Class CHEBI:32536 biolink:NamedThing histidinium residue monarch-merged.owl owl:Class CHEBI:32579 biolink:NamedThing lysinium residue monarch-merged.owl owl:Class CHEBI:32699 biolink:NamedThing argininium residue monarch-merged.owl owl:Class CHEBI:33727 biolink:NamedThing proteinogenic amino-acid residue cation monarch-merged.owl owl:Class CHEBI:61897 biolink:NamedThing N(omega),N(omega)-dimethyl-L-arginine(1+) residue monarch-merged.owl owl:Class CHEBI:61929 biolink:NamedThing N(6)-methyl-L-lysinium residue monarch-merged.owl owl:Class CHEBI:61961 biolink:NamedThing N(6),N(6),N(6)-trimethyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:61976 biolink:NamedThing N(6),N(6)-dimethyl-L-lysine(1+) residue monarch-merged.owl owl:Class CHEBI:65280 biolink:NamedThing N(omega)-methyl-argininium(1+) residue monarch-merged.owl owl:Class CHEBI:82657 biolink:NamedThing deoxyhypusine(2+) residue monarch-merged.owl owl:Class CHEBI:83143 biolink:NamedThing N(6)-[(R)-S(8)-ammoniomethyldihydrolipoyl]-L-lysine(1+) residue monarch-merged.owl owl:Class CHEBI:88221 biolink:NamedThing N(omega),N('omega)-dimethyl-L-arginine(1+) residue monarch-merged.owl owl:Class CHEBI:88222 biolink:NamedThing N(5)-methyl-argininium(1+) residue monarch-merged.owl owl:Class CHEBI:90418 biolink:NamedThing N(6)-D-ribulosyl-L-lysinium residue monarch-merged.owl owl:Class CHEBI:90420 biolink:NamedThing N(6)-(3-O-phospho-D-ribulosyl)-L-lysinium residue monarch-merged.owl owl:Class CHEBI:91175 biolink:NamedThing hypusine(2+) residue monarch-merged.owl owl:Class CHEBI:131711 biolink:NamedThing (S)-demethyl-4-deoxygadusol(1-) monarch-merged.owl owl:Class CHEBI:25696 biolink:NamedThing organic anion Any organic ion with a net negative charge. monarch-merged.owl organic anions chebi_ontology owl:Class CHEBI:131879 biolink:NamedThing cholanic acid conjugate anion monarch-merged.owl owl:Class CHEBI:132139 biolink:NamedThing (R)-demethyl-4-deoxygadusol(1-) monarch-merged.owl owl:Class CHEBI:132737 biolink:NamedThing 4-de(dimethylamino)-4-oxoanhydrotetracycline(1-) monarch-merged.owl owl:Class CHEBI:132924 biolink:NamedThing sulfoglycolithocholate anion monarch-merged.owl owl:Class CHEBI:132940 biolink:NamedThing 1,3,7-trimethylurate monarch-merged.owl owl:Class CHEBI:132960 biolink:NamedThing 3-phosphoglycerate monarch-merged.owl owl:Class CHEBI:133598 biolink:NamedThing chlortetracycline(1-) monarch-merged.owl owl:Class CHEBI:133720 biolink:NamedThing glycochenodeoxycholic acid sulfate anion monarch-merged.owl owl:Class CHEBI:134348 biolink:NamedThing beta-bitter acid(1-) monarch-merged.owl owl:Class CHEBI:136518 biolink:NamedThing 8-amino-8-demethylriboflavin(1-) monarch-merged.owl owl:Class CHEBI:136520 biolink:NamedThing 8-demethyl-8-(methylamino)riboflavin(1-) monarch-merged.owl owl:Class CHEBI:136521 biolink:NamedThing roseoflavin(1-) monarch-merged.owl owl:Class CHEBI:136842 biolink:NamedThing tenuazonic acid(1-) monarch-merged.owl owl:Class CHEBI:138178 biolink:NamedThing (4S)-2,3-dehydroflavan-3,4-diol(1-) monarch-merged.owl owl:Class CHEBI:138275 biolink:NamedThing oxidized Renilla luciferin(1-) monarch-merged.owl owl:Class CHEBI:138948 biolink:NamedThing (4S)-2,3-dehydroleucocyanidin(1-) monarch-merged.owl owl:Class CHEBI:138950 biolink:NamedThing (4S)-2,3-dehydroleucopelargonidin(1-) monarch-merged.owl owl:Class CHEBI:142513 biolink:NamedThing oxime anion A organic ion resulting from the deprotonation of the hydroxy group of any oxime. monarch-merged.owl oxime anions|oxime anion|oximate|oximates -1 CNO 42.017 41.99799 C(*)(=N[O-])* chebi_ontology owl:Class CHEBI:142839 biolink:NamedThing enolate An organic anion arising from deprotonation of the hydroxy group of an enol. monarch-merged.owl enolate anion|enolate anions|enolates -1 C2OR3 40.021 39.99491 [O-]C(=C(*)*)* chebi_ontology owl:Class CHEBI:142858 biolink:NamedThing (2R)-glufosinate zwitterion(1-) monarch-merged.owl owl:Class CHEBI:142859 biolink:NamedThing glufosinate-P zwitterion(1-) monarch-merged.owl owl:Class CHEBI:144775 biolink:NamedThing delphinidin(1-) monarch-merged.owl owl:Class CHEBI:144777 biolink:NamedThing pelargonidin(1-) monarch-merged.owl owl:Class CHEBI:145795 biolink:NamedThing digoxin(1-) An organic anion that is the conjugate base of digoxin resulting from the deprotonation of furanone moiety; major species at pH 7.3. monarch-merged.owl digoxin|12beta,14-dihydroxy-17beta-(5-oxo-2,5-dihydrofuran-2-id-3-yl)-5beta,14beta-androstan-3beta-yl 2,6-dideoxy-beta-D-ribo-hexopyranosyl-(1->4)-2,6-dideoxy-beta-D-ribo-hexopyranosyl-(1->4)-2,6-dideoxy-beta-D-ribo-hexopyranoside|digoxin anion owl:Class CHEBI:145798 biolink:NamedThing ouabain(1-) An organic anion that is the conjugate base of ouabain resulting from the deprotonation of the furanone moiety; major species at pH 7.3. monarch-merged.owl ouabain|1beta,5,11alpha,14,19-pentahydroxy-17beta-(5-oxo-2,5-dihydrofuran-2-id-3-yl)-5beta,14beta-androstan-3beta-yl 6-deoxy-alpha-L-mannopyranoside|ouabain anion -1 C29H43O12 InChI=1S/C29H43O12/c1-13-22(34)23(35)24(36)25(40-13)41-15-8-19(32)28(12-30)21-17(3-5-27(28,37)9-15)29(38)6-4-16(14-7-20(33)39-11-14)26(29,2)10-18(21)31/h7,11,13,15-19,21-25,30-32,34-38H,3-6,8-10,12H2,1-2H3/q-1/t13-,15-,16+,17+,18+,19+,21+,22-,23+,24+,25-,26+,27-,28+,29-/m0/s1 MPLJNVZJPLASQC-HBYQJFLCSA-N 583.652 583.27600 O1[C@H]([C@@H]([C@H]([C@H]([C@@H]1O[C@H]2C[C@H]([C@]3([C@@](C2)(CC[C@]4([C@]5(CC[C@@H]([C@]5(C[C@H]([C@]34[H])O)C)C=6[CH-]OC(C6)=O)O)[H])O)CO)O)O)O)O)C PMID:32326025|PMID:31170971|PMID:32488807|PMID:31087249|PMID:32368275|PMID:32651756|PMID:31075189 chebi_ontology owl:Class CHEBI:15720 biolink:NamedThing 8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-en-1-yl}cyclopentyl]octanoate monarch-merged.owl owl:Class CHEBI:15832 biolink:NamedThing urea-1-carboxylate monarch-merged.owl owl:Class CHEBI:17125 biolink:NamedThing 6-acetamido-3-aminohexanoate monarch-merged.owl owl:Class CHEBI:24648 biolink:NamedThing hydroxamic acid anion monarch-merged.owl owl:Class CHEBI:28199 biolink:NamedThing ferrienterobactin(3-) monarch-merged.owl owl:Class CHEBI:35367 biolink:NamedThing thiocarboxylic acid anion monarch-merged.owl thiocarboxylates|thiocarboxylic acid anions chebi_ontology owl:Class CHEBI:35604 biolink:NamedThing carbon oxoanion A negative ion consisting solely of carbon and oxygen atoms, and therefore having the general formula CxOy(n-) for some integers x, y and n. monarch-merged.owl carbon oxoanions|oxocarbon anion|oxocarbon anions|carbon oxoanion chebi_ontology owl:Class CHEBI:36877 biolink:NamedThing organic radical anion monarch-merged.owl owl:Class CHEBI:37785 biolink:NamedThing organosulfinate oxoanion monarch-merged.owl owl:Class CHEBI:38222 biolink:NamedThing hydrocarbyl anion monarch-merged.owl chebi_ontology owl:Class CHEBI:38596 biolink:NamedThing pyrazolide monarch-merged.owl owl:Class CHEBI:46818 biolink:NamedThing urate anion An organic anion obtained by removal of at least one proton from any uric acid. monarch-merged.owl urate anion chebi_ontology owl:Class CHEBI:50335 biolink:NamedThing organic nitrogen anion monarch-merged.owl owl:Class CHEBI:50525 biolink:NamedThing phenolate anion monarch-merged.owl owl:Class CHEBI:50634 biolink:NamedThing acetazolamide(1-) monarch-merged.owl acetazolamide|[(5-acetamido-1,3,4-thiadiazol-2-yl)sulfonyl]azanide owl:Class CHEBI:52090 biolink:NamedThing methoxide An organic anion that is the conjugate base of methanol. monarch-merged.owl methoxide ion -1 CH3O InChI=1S/CH3O/c1-2/h1H3/q-1 NBTOZLQBSIZIKS-UHFFFAOYSA-N 31.03390 31.01894 C[O-] Reaxys:1839368 chebi_ontology owl:Class CHEBI:52092 biolink:NamedThing ethoxide An organic anion that is the conjugate base of ethanol. monarch-merged.owl ethoxy anion -1 C2H5O InChI=1S/C2H5O/c1-2-3/h2H2,1H3/q-1 HHFAWKCIHAUFRX-UHFFFAOYSA-N 45.06050 45.03459 CC[O-] Beilstein:1839415|Reaxys:1839415 chebi_ontology owl:Class CHEBI:57266 biolink:NamedThing (-)-usnic acid(2-) monarch-merged.owl owl:Class CHEBI:57294 biolink:NamedThing (+)-dihydrokaempferol 7-oxoanion monarch-merged.owl owl:Class CHEBI:57480 biolink:NamedThing 2,3-dihydrobiochanin A(1-) monarch-merged.owl owl:Class CHEBI:57612 biolink:NamedThing phosphonatoguanidiniumylacetate(2-) monarch-merged.owl owl:Class CHEBI:57676 biolink:NamedThing questin-2-olate monarch-merged.owl owl:Class CHEBI:57718 biolink:NamedThing barbiturate(2-) Dianion of barbituric acid arising from deprotonation at the N-1 and C-5 positions. monarch-merged.owl 2,4,6-trioxo-1,3-diazinane-1,5-diide|barbiturate dianion|2,4,6-trioxotetrahydro-2H-pyrimidine-1,5-diide owl:Class CHEBI:57775 biolink:NamedThing stipitaton-4-olate monarch-merged.owl owl:Class CHEBI:57778 biolink:NamedThing triacetate lactone oxoanion monarch-merged.owl owl:Class CHEBI:57819 biolink:NamedThing quinolin-4(1H)-one-3-olate monarch-merged.owl owl:Class CHEBI:57864 biolink:NamedThing (4S,5S)-5-hydroxy-4-(hydroxymethyl)-6-oxocyclohex-1-en-1-olate monarch-merged.owl owl:Class CHEBI:57900 biolink:NamedThing oxidized Photinus luciferin(1-) monarch-merged.owl owl:Class CHEBI:58013 biolink:NamedThing aspulvinone H(1-) monarch-merged.owl owl:Class CHEBI:58026 biolink:NamedThing 8-hydroxy-1,4-dioxo-1,4-dihydronaphthalen-2-olate monarch-merged.owl owl:Class CHEBI:58067 biolink:NamedThing (3Z,5S)-3-(1-oxidoethylidene)-5-{[4-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]methyl}pyrrolidine-2,4-dione(1-) monarch-merged.owl owl:Class CHEBI:58070 biolink:NamedThing dehydroascorbide(1-) monarch-merged.owl owl:Class CHEBI:58124 biolink:NamedThing isovitexin 2''-O-beta-D-glucoside(1-) monarch-merged.owl owl:Class CHEBI:58176 biolink:NamedThing phenylthioacetohydroximate monarch-merged.owl owl:Class CHEBI:58201 biolink:NamedThing 6,7-dimethyl-8-(1-D-ribityl)lumazine(1-) monarch-merged.owl owl:Class CHEBI:58240 biolink:NamedThing aspulvinone E(1-) monarch-merged.owl owl:Class CHEBI:58256 biolink:NamedThing alpha-cyclopiazonate monarch-merged.owl owl:Class CHEBI:58277 biolink:NamedThing dehydro-D-arabinono-1,4-lactone(1-) monarch-merged.owl owl:Class CHEBI:58393 biolink:NamedThing aureusidin-6-olate monarch-merged.owl owl:Class CHEBI:58470 biolink:NamedThing apigenin-7-olate monarch-merged.owl owl:Class CHEBI:58474 biolink:NamedThing 3,6-dioxocyclohexa-1,4-dien-1-olate monarch-merged.owl owl:Class CHEBI:58539 biolink:NamedThing L-dehydroascorbate monarch-merged.owl owl:Class CHEBI:58571 biolink:NamedThing 5-methylbarbituride monarch-merged.owl owl:Class CHEBI:58588 biolink:NamedThing flavonol oxoanion monarch-merged.owl owl:Class CHEBI:58604 biolink:NamedThing L-mimosine(1-) monarch-merged.owl owl:Class CHEBI:58616 biolink:NamedThing 2-methyl-4-oxo-1,4-dihydroquinolin-3-olate monarch-merged.owl owl:Class CHEBI:58619 biolink:NamedThing S-alkyl thiosulfate anion monarch-merged.owl owl:Class CHEBI:58636 biolink:NamedThing 2-hydroxy-2,3-dihydrogenistein-7-olate monarch-merged.owl owl:Class CHEBI:58691 biolink:NamedThing (3R,4S,5R)-3,4,5-trihydroxy-6-oxocyclohex-1-en-1-olate monarch-merged.owl owl:Class CHEBI:58696 biolink:NamedThing flaviolin-2-olate monarch-merged.owl owl:Class CHEBI:58781 biolink:NamedThing (4R)-2-acetyl-4-(3-acetyl-2,4,6-trihydroxy-5-methylphenyl)-4-methyl-3-oxocyclohexa-1,5-dien-1-olate monarch-merged.owl owl:Class CHEBI:58795 biolink:NamedThing 1-hydroxy-5-(methylthio)-3-oxopent-1-en-2-olate monarch-merged.owl owl:Class CHEBI:58806 biolink:NamedThing ascopyrone M(1-) monarch-merged.owl owl:Class CHEBI:58807 biolink:NamedThing ascopyrone P(1-) monarch-merged.owl owl:Class CHEBI:58871 biolink:NamedThing 3,3'-biflaviolin 2,2'-diolate monarch-merged.owl owl:Class CHEBI:58882 biolink:NamedThing phosphinothricin(1-) monarch-merged.owl owl:Class CHEBI:58883 biolink:NamedThing flavonolate 7-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:58941 biolink:NamedThing cyclic tetrapyrrole anion An organic anion arising from deprotonation of a cyclic tetrapyrrole compound. monarch-merged.owl cyclic tetrapyrrole anions chebi_ontology owl:Class CHEBI:58958 biolink:NamedThing organosulfate oxoanion An organic anion of general formula RS(=O)2O(-) where R is an organyl group. monarch-merged.owl organosulfate oxoanions -1 O4SR 96.06300 95.95173 [O-]S(=O)(=O)O[*] chebi_ontology owl:Class CHEBI:59252 biolink:NamedThing linear tetrapyrrole anion An organic anion arising from deprotonation of a acyclic tetrapyrrole compound. monarch-merged.owl acyclic tetrapyrrole anions|linear tetrapyrrole anions|acyclic tetrapyrrole anion chebi_ontology owl:Class CHEBI:59561 biolink:NamedThing diamino acid anion An organic anion that is the conjugate base of diamino acid. monarch-merged.owl diamino acid anions chebi_ontology owl:Class CHEBI:59635 biolink:NamedThing organophosphonate oxoanion monarch-merged.owl owl:Class CHEBI:59653 biolink:NamedThing arseno-mycothiol(1-) monarch-merged.owl owl:Class CHEBI:59655 biolink:NamedThing arseno-mycothiol(2-) monarch-merged.owl owl:Class CHEBI:59904 biolink:NamedThing 7,8-didemethyl-8-hydroxy-5-deazariboflavin(1-) monarch-merged.owl owl:Class CHEBI:60038 biolink:NamedThing flavonoid oxoanion monarch-merged.owl owl:Class CHEBI:60334 biolink:NamedThing peptide anion An anion formed by deprotonation of at least one peptide carboxy group. monarch-merged.owl peptide anions chebi_ontology owl:Class CHEBI:60345 biolink:NamedThing organic phosphoramidate anion monarch-merged.owl owl:Class CHEBI:60531 biolink:NamedThing flavin(1-) Flavin protonated to pH 7.3 monarch-merged.owl an oxidized flavin owl:Class CHEBI:61660 biolink:NamedThing organic sulfamate oxoanion An anion resulting from the removal of a proton from an organic sulfamic acid group. monarch-merged.owl organic sulfamic acid anions|an organic sulfamic acid anion -1 NO3SR2 94.07000 93.95989 [O-]S(=O)(=O)N([*])[*] chebi_ontology owl:Class CHEBI:61693 biolink:NamedThing carboxyalkyl phosphate oxoanion monarch-merged.owl owl:Class CHEBI:64998 biolink:NamedThing nicotine blue(2-) monarch-merged.owl owl:Class CHEBI:71337 biolink:NamedThing minocycline(1-) monarch-merged.owl owl:Class CHEBI:71339 biolink:NamedThing novobiocin(1-) monarch-merged.owl owl:Class CHEBI:71345 biolink:NamedThing norsolorinate anthrone(2-) monarch-merged.owl owl:Class CHEBI:71346 biolink:NamedThing norsolorinate(2-) monarch-merged.owl owl:Class CHEBI:71392 biolink:NamedThing tetracycline(1-) An organic anion that is the conjugate base of tetracycline obtained by deprotonation of the two enolic hydroxy groups and protonation of the tertiary amino group. monarch-merged.owl (1S,4aS,11S,11aS,12aS)-3-carbamoyl-1-(dimethylazaniumyl)-4a,7,11-trihydroxy-11-methyl-4,6-dioxo-1,4,4a,6,11,11a,12,12a-octahydrotetracene-2,5-diolate|tetracycline anion owl:Class CHEBI:71516 biolink:NamedThing cyanidin 3-O-[beta-D-xylosyl-(1->2)-beta-D-galactoside](1-) monarch-merged.owl owl:Class CHEBI:71533 biolink:NamedThing norsolorinate(1-) monarch-merged.owl owl:Class CHEBI:71635 biolink:NamedThing versicolorone(1-) monarch-merged.owl owl:Class CHEBI:71636 biolink:NamedThing versiconol acetate(1-) monarch-merged.owl owl:Class CHEBI:71682 biolink:NamedThing cyanidin(1-) monarch-merged.owl owl:Class CHEBI:72670 biolink:NamedThing (2S)-versicolorone(2-) monarch-merged.owl owl:Class CHEBI:73281 biolink:NamedThing (2S)-versicolorone(1-) monarch-merged.owl owl:Class CHEBI:73953 biolink:NamedThing novobiocic acid(1-) monarch-merged.owl owl:Class CHEBI:73954 biolink:NamedThing 8-desmethylnovobiocic acid(1-) monarch-merged.owl owl:Class CHEBI:73955 biolink:NamedThing descarbamoylnovobiocin(1-) monarch-merged.owl owl:Class CHEBI:73957 biolink:NamedThing desmethyldescarbamoylnovobiocin(1-) monarch-merged.owl owl:Class CHEBI:74156 biolink:NamedThing 3-amino-4,7-dihydroxycoumarin(1-) monarch-merged.owl owl:Class CHEBI:74224 biolink:NamedThing genistein(1-) monarch-merged.owl owl:Class CHEBI:74950 biolink:NamedThing organic phosphorothioate anion monarch-merged.owl owl:Class CHEBI:76104 biolink:NamedThing kaempferol 3-O-beta-D-galactoside(1-) monarch-merged.owl owl:Class CHEBI:76248 biolink:NamedThing 4-hydroxy-2,5-dimethylfuran-3-olate monarch-merged.owl owl:Class CHEBI:76272 biolink:NamedThing kaempferol 3-O-beta-D-xyloside(1-) monarch-merged.owl owl:Class CHEBI:76892 biolink:NamedThing A47934(2-) monarch-merged.owl owl:Class CHEBI:76894 biolink:NamedThing A41030A(1-) monarch-merged.owl owl:Class CHEBI:77638 biolink:NamedThing dihydrophloroglucinol(1-) monarch-merged.owl owl:Class CHEBI:77640 biolink:NamedThing apiin(1-) monarch-merged.owl owl:Class CHEBI:77663 biolink:NamedThing pulcherriminate(2-) monarch-merged.owl owl:Class CHEBI:77824 biolink:NamedThing cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside(2-) monarch-merged.owl owl:Class CHEBI:77857 biolink:NamedThing cyanidin 3-O-beta-D-glucoside(1-) monarch-merged.owl owl:Class CHEBI:77858 biolink:NamedThing 4-hydroxycoumarin(1-) monarch-merged.owl owl:Class CHEBI:77887 biolink:NamedThing delphinidin 3-O-(6''-O-malonyl)-beta-D-glucoside(2-) monarch-merged.owl owl:Class CHEBI:77938 biolink:NamedThing barbiturate(1-) An organic anion obtained by removal of one of the methylene protons from barbituric acid. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.). monarch-merged.owl 2,4,6-trioxohexahydropyrimidin-5-ide|barbiturate owl:Class CHEBI:78347 biolink:NamedThing 3-linalylflaviolin-2-olate monarch-merged.owl owl:Class CHEBI:78588 biolink:NamedThing 6-linalyl-2-O,3-dimethylflaviolin-7-olate monarch-merged.owl owl:Class CHEBI:78589 biolink:NamedThing 2-O,3-dimethylflaviolin-7-olate monarch-merged.owl owl:Class CHEBI:84291 biolink:NamedThing organic sulfur anion monarch-merged.owl owl:Class CHEBI:84589 biolink:NamedThing mitomycin A(1-) monarch-merged.owl owl:Class CHEBI:84590 biolink:NamedThing mitomycin B(1-) monarch-merged.owl owl:Class CHEBI:84591 biolink:NamedThing 7-demethylmitomycin B(1-) monarch-merged.owl owl:Class CHEBI:84592 biolink:NamedThing 7-demethylmitomycin A(1-) monarch-merged.owl owl:Class CHEBI:88190 biolink:NamedThing 2-oxido-5-methylquinone An organic anion obtained by deprotonation of the hydroxy group of 2-hydroxy-5-methylquinone. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.). monarch-merged.owl 2-hydroxy-5-methylquinone(1-)|4-methyl-3,6-dioxocyclohexa-1,4-dien-1-olate|2-hydroxy-5-methylquinone -1 C7H5O3 InChI=1S/C7H6O3/c1-4-2-6(9)7(10)3-5(4)8/h2-3,10H,1H3/p-1 BMBZVGUSOUAIMK-UHFFFAOYSA-M 137.113 137.02442 C1(C=C(C(C=C1C)=O)[O-])=O MetaCyc:CPD-9135 chebi_ontology owl:Class CHEBI:131718 biolink:NamedThing S-(1-hydroxy-2-methylbut-3-en-2-yl)glutathione(1-) monarch-merged.owl owl:Class CHEBI:90779 biolink:NamedThing S-substituted glutathione(1-) monarch-merged.owl owl:Class CHEBI:131798 biolink:NamedThing S-(2-methyl-1-oxobut-3-en-2-yl)glutathione(1-) monarch-merged.owl owl:Class CHEBI:133977 biolink:NamedThing S-(2,4-dinitrophenyl)glutathione(1-) monarch-merged.owl owl:Class CHEBI:134616 biolink:NamedThing 2-(glutathion-S-yl)-1,4-hydroquinone(1-) monarch-merged.owl owl:Class CHEBI:136061 biolink:NamedThing (E)-1-(glutathione-S-yl)-omega-(methylthio)alkylhydroximate(1-) monarch-merged.owl owl:Class CHEBI:136444 biolink:NamedThing (E)-1-(glutathion-S-yl)-2-(indol-3-yl)acetohydroximate(1-) monarch-merged.owl owl:Class CHEBI:136447 biolink:NamedThing (Z)-1-(glutathione-S-yl)-2-phenylacetohydroximate(1-) monarch-merged.owl owl:Class CHEBI:13172 biolink:NamedThing keto-L-sorbose monarch-merged.owl owl:Class CHEBI:17266 biolink:NamedThing L-sorbose monarch-merged.owl owl:Class CHEBI:48649 biolink:NamedThing L-sorbopyranose monarch-merged.owl owl:Class CHEBI:32955 biolink:NamedThing epoxide monarch-merged.owl owl:Class CHEBI:133131 biolink:NamedThing spiro-epoxide monarch-merged.owl owl:Class CHEBI:136988 biolink:NamedThing N-[(8Z,11Z,14Z)-5,6-epoxyicosatrienoyl]ethanolamine monarch-merged.owl owl:Class CHEBI:136989 biolink:NamedThing N-[(5Z,11Z,14Z)-8,9-epoxyicosatrienoyl]ethanolamine monarch-merged.owl owl:Class CHEBI:136990 biolink:NamedThing N-[(5Z,8Z,14Z)-11,12-epoxyicosatrienoyl]ethanolamine monarch-merged.owl owl:Class CHEBI:136991 biolink:NamedThing N-[(5Z,8Z,11Z)-14,15-epoxyicosatrienoyl]ethanolamine monarch-merged.owl owl:Class CHEBI:138307 biolink:NamedThing (3S,22S)-2,3:22,23-diepoxy-2,3,22,23-tetrahydrosqualene monarch-merged.owl owl:Class CHEBI:15581 biolink:NamedThing juvenile hormone II monarch-merged.owl owl:Class CHEBI:15900 biolink:NamedThing trans-2,3-epoxysuccinic acid monarch-merged.owl owl:Class CHEBI:16226 biolink:NamedThing limonin monarch-merged.owl owl:Class CHEBI:16431 biolink:NamedThing limonene 1,2-epoxide monarch-merged.owl owl:Class CHEBI:16794 biolink:NamedThing scopolamine monarch-merged.owl owl:Class CHEBI:17907 biolink:NamedThing styrene oxide monarch-merged.owl owl:Class CHEBI:23043 biolink:NamedThing epoxycarotenoid monarch-merged.owl owl:Class CHEBI:27493 biolink:NamedThing juvenile hormone III monarch-merged.owl owl:Class CHEBI:29060 biolink:NamedThing alpha-pinene oxide monarch-merged.owl owl:Class CHEBI:31549 biolink:NamedThing epothilone A monarch-merged.owl owl:Class CHEBI:31550 biolink:NamedThing epothilone B monarch-merged.owl owl:Class CHEBI:38685 biolink:NamedThing 1,2-epoxypropane monarch-merged.owl owl:Class CHEBI:50006 biolink:NamedThing stilbene oxide monarch-merged.owl owl:Class CHEBI:78662 biolink:NamedThing 2,3-epoxysqualene monarch-merged.owl owl:Class CHEBI:83641 biolink:NamedThing juvenile hormone I monarch-merged.owl owl:Class CHEBI:85337 biolink:NamedThing dapdiamide E monarch-merged.owl owl:Class CHEBI:90228 biolink:NamedThing epoxypheophorbide a monarch-merged.owl owl:Class CHEBI:90889 biolink:NamedThing aurachin C epoxide monarch-merged.owl owl:Class CHEBI:91126 biolink:NamedThing 2-trans,4-trans-xanthoxin monarch-merged.owl owl:Class CHEBI:9688 biolink:NamedThing trichodermin monarch-merged.owl owl:Class CHEBI:131725 biolink:NamedThing coproporphyrin III(4-) monarch-merged.owl owl:Class CHEBI:136840 biolink:NamedThing pheophytin a(1-) monarch-merged.owl owl:Class CHEBI:136841 biolink:NamedThing nickel-sirohydrochlorin(8-) monarch-merged.owl owl:Class CHEBI:136887 biolink:NamedThing nickel-sirohydrochlorin a,c-diamide(6-) monarch-merged.owl owl:Class CHEBI:136888 biolink:NamedThing 15,17(3)-seco-F430-17(3)-acid(6-) monarch-merged.owl owl:Class CHEBI:139291 biolink:NamedThing chlorophyll(1-) monarch-merged.owl owl:Class CHEBI:140497 biolink:NamedThing 12,18-didecarboxysiroheme(6-) monarch-merged.owl owl:Class CHEBI:140498 biolink:NamedThing dihydro-ferroheme d1(4-) monarch-merged.owl owl:Class CHEBI:55377 biolink:NamedThing beta-hematin monarch-merged.owl owl:Class CHEBI:57306 biolink:NamedThing protoporphyrin(2-) The dicarboxylate anion of protoporphyrin, obtained by deprotonation of both carboxy groups. monarch-merged.owl 7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoate|protoporphyrin IX -2 C34H32N4O4 InChI=1S/C34H34N4O4/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25/h7-8,13-16,35,38H,1-2,9-12H2,3-6H3,(H,39,40)(H,41,42)/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16- KSFOVUSSGSKXFI-UJJXFSCMSA-L 560.64230 560.24345 Cc1c(CCC([O-])=O)c2cc3[nH]c(cc4nc(cc5[nH]c(cc1n2)c(C)c5C=C)c(C)c4C=C)c(C)c3CCC([O-])=O Beilstein:3897489|MetaCyc:PROTOPORPHYRIN_IX|Beilstein:9313467 chebi_ontology owl:Class CHEBI:57307 biolink:NamedThing protoporphyrinogen(2-) monarch-merged.owl owl:Class CHEBI:57308 biolink:NamedThing uroporphyrinogen III(8-) monarch-merged.owl owl:Class CHEBI:57309 biolink:NamedThing coproporphyrinogen III(4-) monarch-merged.owl owl:Class CHEBI:57942 biolink:NamedThing chlorophyllide a(1-) monarch-merged.owl owl:Class CHEBI:58351 biolink:NamedThing sirohydrochlorin(8-) monarch-merged.owl owl:Class CHEBI:58416 biolink:NamedThing chlorophyll a(1-) monarch-merged.owl owl:Class CHEBI:58632 biolink:NamedThing 2,4-divinyl protochlorophyllide a(2-) monarch-merged.owl owl:Class CHEBI:58687 biolink:NamedThing pheophorbide a(2-) monarch-merged.owl owl:Class CHEBI:58688 biolink:NamedThing divinyl chlorophyllide a(1-) monarch-merged.owl owl:Class CHEBI:58741 biolink:NamedThing 7(1)-hydroxychlorophyllide a(1-) monarch-merged.owl owl:Class CHEBI:58742 biolink:NamedThing pyropheophorbide a anion monarch-merged.owl owl:Class CHEBI:58743 biolink:NamedThing 13(2)-carboxypyropheophorbide a(2-) monarch-merged.owl owl:Class CHEBI:58894 biolink:NamedThing cob(II)yrinate(6-) monarch-merged.owl owl:Class CHEBI:60049 biolink:NamedThing cobalt-sirohydrochlorin(8-) monarch-merged.owl owl:Class CHEBI:60052 biolink:NamedThing siroheme(8-) monarch-merged.owl owl:Class CHEBI:60530 biolink:NamedThing ferroheme o(2-) monarch-merged.owl owl:Class CHEBI:60549 biolink:NamedThing ferroheme d1(4-) monarch-merged.owl owl:Class CHEBI:61717 biolink:NamedThing ferroheme c(2-) monarch-merged.owl owl:Class CHEBI:61720 biolink:NamedThing bacteriochlorophyll a(1-) monarch-merged.owl owl:Class CHEBI:62626 biolink:NamedThing uroporphyrinogen I(8-) monarch-merged.owl owl:Class CHEBI:62631 biolink:NamedThing coproporphyrinogen I(4-) monarch-merged.owl owl:Class CHEBI:68438 biolink:NamedThing Fe-coproporphyrin III(4-) monarch-merged.owl owl:Class CHEBI:83377 biolink:NamedThing 7(1)-hydroxychlorophyll a(1-) monarch-merged.owl owl:Class CHEBI:88232 biolink:NamedThing epoxypheophorbide a(2-) monarch-merged.owl owl:Class CHEBI:88233 biolink:NamedThing epoxypheophorbide a(1-) monarch-merged.owl owl:Class CHEBI:90849 biolink:NamedThing geranylgeranyl bacteriochlorophyllide a(1-) monarch-merged.owl owl:Class CHEBI:33822 biolink:NamedThing organic hydroxy compound An organic compound having at least one hydroxy group attached to a carbon atom. monarch-merged.owl organic hydroxy compounds|hydroxy compounds|organic alcohol CHEBI:64710 chebi_ontology owl:Class CHEBI:132130 biolink:NamedThing hydroxyquinone Any quinone in which one or more of the carbons making up the quinone moiety is substituted by a hydroxy group. monarch-merged.owl hydroxyquinones chebi_ontology owl:Class CHEBI:142734 biolink:NamedThing N-acyl hemiaminal monarch-merged.owl owl:Class CHEBI:147341 biolink:NamedThing fumigermin monarch-merged.owl owl:Class CHEBI:166856 biolink:NamedThing hydroxytrimethylaminium monarch-merged.owl owl:Class CHEBI:23229 biolink:NamedThing chromanol Any member of the class of chromanes that is chromane substituted by one or more hydroxy groups. monarch-merged.owl chebi_ontology owl:Class CHEBI:24663 biolink:NamedThing hydroxy-5beta-cholanic acid Any member of the class of 5beta-cholanic acids carrying at least one hydroxy group at unspecified position. monarch-merged.owl hydroxy-5beta-cholanic acids chebi_ontology owl:Class CHEBI:24668 biolink:NamedThing hydroxyacetophenone monarch-merged.owl owl:Class CHEBI:24697 biolink:NamedThing hydroxyflavanone monarch-merged.owl owl:Class CHEBI:24698 biolink:NamedThing hydroxyflavone monarch-merged.owl owl:Class CHEBI:24699 biolink:NamedThing hydroxyfluorenes monarch-merged.owl owl:Class CHEBI:26177 biolink:NamedThing polyene antibiotic monarch-merged.owl owl:Class CHEBI:26191 biolink:NamedThing polyol A compound that contains two or more hydroxy groups. monarch-merged.owl polyols chebi_ontology owl:Class CHEBI:30879 biolink:NamedThing alcohol A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom. monarch-merged.owl Alcohol|alcohols|an alcohol 0 HOR 17.007 17.00274 O[*] KEGG:C00069 CHEBI:2553|CHEBI:22288|CHEBI:13804 chebi_ontology owl:Class CHEBI:38755 biolink:NamedThing hydroxyisoflavone monarch-merged.owl owl:Class CHEBI:71633 biolink:NamedThing hydroxypyrazine monarch-merged.owl owl:Class CHEBI:72010 biolink:NamedThing hydroxyflavan monarch-merged.owl owl:Class CHEBI:73080 biolink:NamedThing hemiaminal monarch-merged.owl owl:Class CHEBI:76250 biolink:NamedThing hydroxyisoflavans monarch-merged.owl owl:Class CHEBI:78802 biolink:NamedThing diarylheptanoid monarch-merged.owl owl:Class CHEBI:85184 biolink:NamedThing dihydroxycholanic acid monarch-merged.owl owl:Class CHEBI:131797 biolink:NamedThing S-(2-carboxy-2-methylbut-3-en-2-yl)glutathione(2-) monarch-merged.owl owl:Class CHEBI:132200 biolink:NamedThing 11(S),15(S)-dihydroxy-14(R)-(S-glutathionyl)-5(Z),8(Z),12(E)-icosatrienoate(2-) monarch-merged.owl owl:Class CHEBI:133618 biolink:NamedThing leukotriene F4(2-) monarch-merged.owl owl:Class CHEBI:137407 biolink:NamedThing (13R)-S-glutathionyl-(14S)-hydroxy-(4Z,7Z,9E,11E,16Z,19Z)-docosahexaenoate(2-) monarch-merged.owl owl:Class CHEBI:137408 biolink:NamedThing (13R)-glycinylcystein-S-yl-(14S)-hydroxy-(4Z,7Z,9E,11E,16Z,19Z)-docosahexaenoate(1-) monarch-merged.owl owl:Class CHEBI:137990 biolink:NamedThing (beta-Asp-Arg)n-Asp(1-) monarch-merged.owl owl:Class CHEBI:57688 biolink:NamedThing S-formylglutathionate(1-) monarch-merged.owl owl:Class CHEBI:57727 biolink:NamedThing N-formylmethanofuran(5-) monarch-merged.owl owl:Class CHEBI:57915 biolink:NamedThing L-gamma-glutamyl-D-alaninate(1-) monarch-merged.owl owl:Class CHEBI:57925 biolink:NamedThing glutathionate(1-) A peptide anion obtained by deprotonation of both carboxy groups and protonation of the glutamyl amino group of glutathione; major species at pH 7.3. monarch-merged.owl glutathionate ion|glutathione|glutathionate anion|glutathionate -1 C10H16N3O6S InChI=1S/C10H17N3O6S/c11-5(10(18)19)1-2-7(14)13-6(4-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/p-1/t5-,6-/m0/s1 RWSXRVCMGQZWBV-WDSKDSINSA-M 306.310 306.07653 [NH3+][C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(=O)[O-])C(=O)[O-] PMID:4200890|PMID:4745654 chebi_ontology owl:Class CHEBI:57973 biolink:NamedThing leukotriene C4(2-) monarch-merged.owl owl:Class CHEBI:58009 biolink:NamedThing L-gamma-glutamyl-L-cysteinyl-beta-alaninate(1-) monarch-merged.owl owl:Class CHEBI:58140 biolink:NamedThing tetrahydropteroyltri-L-glutamate(4-) monarch-merged.owl owl:Class CHEBI:58151 biolink:NamedThing methanofuranate(4-) monarch-merged.owl owl:Class CHEBI:58173 biolink:NamedThing L-gamma-glutamyl-L-cysteinate(1-) monarch-merged.owl owl:Class CHEBI:58207 biolink:NamedThing 5-methyltetrahydropteroyltri-L-glutamate(4-) monarch-merged.owl owl:Class CHEBI:58297 biolink:NamedThing glutathione disulfide(2-) A doubly-charged peptide anion arising from deprotonation of the four carboxy groups and protonation of the two amino groups of glutathione disulfide; major species at pH 7.3. monarch-merged.owl glutathione disulfide dianion|(2S,2'S)-5,5'-[disulfanediylbis({(2R)-3-[(carboxylatomethyl)amino]-3-oxopropane-1,2-diyl}imino)]bis(2-azaniumyl-5-oxopentanoate)|glutathione disulfide -2 C20H30N6O12S2 InChI=1S/C20H32N6O12S2/c21-9(19(35)36)1-3-13(27)25-11(17(33)23-5-15(29)30)7-39-40-8-12(18(34)24-6-16(31)32)26-14(28)4-2-10(22)20(37)38/h9-12H,1-8,21-22H2,(H,23,33)(H,24,34)(H,25,27)(H,26,28)(H,29,30)(H,31,32)(H,35,36)(H,37,38)/p-2/t9-,10-,11-,12-/m0/s1 YPZRWBKMTBYPTK-BJDJZHNGSA-L 610.61500 610.13741 [NH3+][C@@H](CCC(=O)N[C@@H](CSSC[C@H](NC(=O)CC[C@H]([NH3+])C([O-])=O)C(=O)NCC([O-])=O)C(=O)NCC([O-])=O)C([O-])=O Reaxys:16716416 chebi_ontology owl:Class CHEBI:61386 biolink:NamedThing UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alaninate(4-) monarch-merged.owl owl:Class CHEBI:61395 biolink:NamedThing L-alanyl-D-glutamate(1-) monarch-merged.owl owl:Class CHEBI:61396 biolink:NamedThing L-alanyl-L-glutamate(1-) monarch-merged.owl owl:Class CHEBI:61401 biolink:NamedThing L-alanyl-gamma-D-glutamyl-meso-diaminopimelate(1-) monarch-merged.owl owl:Class CHEBI:61983 biolink:NamedThing L-Ala-gamma-D-Glu-meso-Dap-D-Ala(1-) monarch-merged.owl owl:Class CHEBI:63166 biolink:NamedThing leukotriene D4(1-) monarch-merged.owl owl:Class CHEBI:64981 biolink:NamedThing gammaGluCys(IAN)Gly(1-) monarch-merged.owl owl:Class CHEBI:71261 biolink:NamedThing S-(2-hydroxyacyl)glutathione(1-) monarch-merged.owl owl:Class CHEBI:71304 biolink:NamedThing L-gamma-glutamyl-L-amino acid(1-) monarch-merged.owl owl:Class CHEBI:71681 biolink:NamedThing D-gamma-glutamyl-D-glutamate(2-) monarch-merged.owl owl:Class CHEBI:73784 biolink:NamedThing Gly-Glu(1-) monarch-merged.owl owl:Class CHEBI:74363 biolink:NamedThing Ala-Asp(1-) monarch-merged.owl owl:Class CHEBI:76931 biolink:NamedThing Ac-Asp-Glu(3-) monarch-merged.owl owl:Class CHEBI:76935 biolink:NamedThing Ac-Asp-Glu-Glu(4-) monarch-merged.owl owl:Class CHEBI:77644 biolink:NamedThing 5-L-glutamyl amino acid(1-) monarch-merged.owl owl:Class CHEBI:77981 biolink:NamedThing vancomycin aglycone(1-) monarch-merged.owl owl:Class CHEBI:82703 biolink:NamedThing N(alpha)-(L-gamma-glutamyl)-hercynyl-L-cysteine sulfoxide(1-) monarch-merged.owl owl:Class CHEBI:85586 biolink:NamedThing glutathione S-sulfinate(2-) monarch-merged.owl owl:Class CHEBI:90762 biolink:NamedThing N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine(2-) monarch-merged.owl owl:Class CHEBI:90763 biolink:NamedThing N-acetyl-D-glucosaminyl-(1->4)-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine(2-) monarch-merged.owl owl:Class CHEBI:13173 biolink:NamedThing L-tagatose 6-phosphate monarch-merged.owl owl:Class CHEBI:49094 biolink:NamedThing tagatose 6-phosphate monarch-merged.owl owl:Class CHEBI:17837 biolink:NamedThing D-tagatose 6-phosphate monarch-merged.owl owl:Class CHEBI:131735 biolink:NamedThing 4-[(2-hydroxyethoxy)carbonyl]benzoic acid monarch-merged.owl owl:Class CHEBI:132610 biolink:NamedThing phthalic acid monoester monarch-merged.owl owl:Class CHEBI:138979 biolink:NamedThing hemisuccinate monarch-merged.owl owl:Class CHEBI:15432 biolink:NamedThing magnesium protoporphyrin 13-monomethyl ester monarch-merged.owl owl:Class CHEBI:15433 biolink:NamedThing magnesium 13(1)-oxoprotoporphyrin 13-monomethyl ester monarch-merged.owl owl:Class CHEBI:15434 biolink:NamedThing magnesium 13(1)-hydroxyprotoporphyrin 13-monomethyl ester monarch-merged.owl owl:Class CHEBI:16859 biolink:NamedThing oxaloacetic acid 4-methyl ester monarch-merged.owl owl:Class CHEBI:30619 biolink:NamedThing 2,4-divinyl protochlorophyllide a monarch-merged.owl owl:Class CHEBI:48635 biolink:NamedThing fumagillin monarch-merged.owl owl:Class CHEBI:62769 biolink:NamedThing beta-D-gentiobiosyl crocetin monarch-merged.owl owl:Class CHEBI:71214 biolink:NamedThing 4-methoxy-4-oxo-3-phenylbutanoic acid monarch-merged.owl owl:Class CHEBI:131747 biolink:NamedThing lanostane ester monarch-merged.owl owl:Class CHEBI:131748 biolink:NamedThing ergostane ester monarch-merged.owl owl:Class CHEBI:35915 biolink:NamedThing sterol ester A steroid ester obtained by formal condensation of the carboxy group of any carboxylic acid with the 3-hydroxy group of a sterol. monarch-merged.owl Steryl ester|Sterol ester|3-hydroxysteroid esters|a sterol ester|3-hydroxysteroid ester 0 C20H30O2R2 302.452 302.22458 C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CCC(C4)OC(*)=O)C KEGG:C01958 CHEBI:9269|CHEBI:13220|CHEBI:26770|CHEBI:9268|CHEBI:15115|CHEBI:26772 chebi_ontology owl:Class CHEBI:132358 biolink:NamedThing 1alpha-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:137031 biolink:NamedThing 19-hydroxy-5alpha-dihydrotestosterone monarch-merged.owl owl:Class CHEBI:137032 biolink:NamedThing 19-oxo-5alpha-dihydrotestosterone monarch-merged.owl owl:Class CHEBI:137037 biolink:NamedThing 18-hydroxy-5alpha-dihydrotestosterone monarch-merged.owl owl:Class CHEBI:137076 biolink:NamedThing 1beta-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:16524 biolink:NamedThing testosterone acetate monarch-merged.owl owl:Class CHEBI:167106 biolink:NamedThing androstane conjugate monarch-merged.owl owl:Class CHEBI:17347 biolink:NamedThing testosterone An androstanoid having 17beta-hydroxy and 3-oxo groups, together with unsaturation at C-4-C-5.. monarch-merged.owl testosterone|17beta-Hydroxy-4-androsten-3-one|Testosterone|Androderm|testosterona|Testosteron|TESTOSTERONE|17beta-hydroxyandrost-4-en-3-one|4-androsten-17beta-ol-3-one|testosteronum|17beta-hydroxy-4-androsten-3-one 0 C19H28O2 InChI=1S/C19H28O2/c1-18-9-7-13(20)11-12(18)3-4-14-15-5-6-17(21)19(15,2)10-8-16(14)18/h11,14-17,21H,3-10H2,1-2H3/t14-,15-,16-,17-,18-,19-/m0/s1 MUMGGOZAMZWBJJ-DYKIIFRCSA-N 288.42440 288.20893 [H][C@@]12CCC3=CC(=O)CC[C@]3(C)[C@@]1([H])CC[C@]1(C)[C@@H](O)CC[C@@]21[H] KEGG:C00535|Wikipedia:Testosterone|Beilstein:3653705|PMID:24498482|PDBeChem:TES|Drug_Central:2607|Reaxys:1915399|PMID:11786693|HMDB:HMDB0000234|KEGG:D00075|KNApSAcK:C00003675|CAS:58-22-0|PMID:18900503|LIPID_MAPS_instance:LMST02020002|Beilstein:1915399|PMID:10438974|DrugBank:DB00624|Gmelin:538843 CHEBI:9461|CHEBI:15214|CHEBI:26883|CHEBI:45798 chebi_ontology owl:Class CHEBI:34133 biolink:NamedThing 11-oxotestosterone A 3-oxo Delta(4)-steroid that is testosterone carrying an additional oxo substituent at position 11. monarch-merged.owl 17beta-hydroxyandrost-4-ene-3,11-dione|11-Keto-testosterone|11-Ketotestosterone|(17beta)-17-hydroxyandrost-4-ene-3,11-dione|17beta-Hydroxyandrost-4-ene-3,11-dione 0 C19H26O3 InChI=1S/C19H26O3/c1-18-8-7-12(20)9-11(18)3-4-13-14-5-6-16(22)19(14,2)10-15(21)17(13)18/h9,13-14,16-17,22H,3-8,10H2,1-2H3/t13-,14-,16-,17+,18-,19-/m0/s1 WTPMRQZHJLJSBO-XQALERBDSA-N 302.409 302.18819 C1[C@@]2([C@@]([C@@]3(C(C1)=CC(CC3)=O)C)(C(C[C@@]4(C)[C@@]2([H])CC[C@@H]4O)=O)[H])[H] PMID:28666831|CAS:564-35-2|PMID:28148717|PMID:27793721|PMID:27870212|PMID:27519632|PMID:28666855|PMID:28279673|PMID:27734466|Reaxys:3153665|PMID:28234803|MetaCyc:CPD-13749|PMID:27044511|PMID:26764051|PMID:27025723|PMID:28109018|PMID:28321875|PMID:28527702|PMID:26041454|PMID:28095297|PMID:28652135|KEGG:C14256|PMID:27428878|PMID:28213303|PMID:28197868|PMID:27852761|PMID:28472487|PMID:27750118|PMID:27927697 chebi_ontology owl:Class CHEBI:34477 biolink:NamedThing 6beta-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:42534 biolink:NamedThing epitestosterone monarch-merged.owl owl:Class CHEBI:75308 biolink:NamedThing 19-oxotestosterone monarch-merged.owl owl:Class CHEBI:81481 biolink:NamedThing 11beta-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:83027 biolink:NamedThing 16beta-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:86377 biolink:NamedThing 5beta-dihydroepitestosterone monarch-merged.owl owl:Class CHEBI:131739 biolink:NamedThing lysophosphatidylcholine (18:1/0:0) monarch-merged.owl owl:Class CHEBI:58168 biolink:NamedThing 1-O-acyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:131986 biolink:NamedThing 1-docosahexaenoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:132278 biolink:NamedThing 1-O-[(9S,10R)-epoxystearoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:132280 biolink:NamedThing 1-O-[(9R,10S)-epoxystearoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:132285 biolink:NamedThing 1-O-(8-hydroxyoleoyl)-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:132286 biolink:NamedThing 1-O-(11-hydroxyoleoyl)-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:28610 biolink:NamedThing 1-O-oleoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:64489 biolink:NamedThing 1-myristoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:72998 biolink:NamedThing 1-hexadecanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:73851 biolink:NamedThing 1-[(9Z)-hexadecenoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:73858 biolink:NamedThing 1-stearoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:74966 biolink:NamedThing 1-lauroyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:74968 biolink:NamedThing 1-icosanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:78215 biolink:NamedThing 1-hexanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:91309 biolink:NamedThing lysophosphatidylcholine(18:2/0:0) monarch-merged.owl owl:Class CHEBI:91310 biolink:NamedThing lysophosphatidylcholine(20:4/0:0) monarch-merged.owl owl:Class CHEBI:76083 biolink:NamedThing oleoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:131745 biolink:NamedThing lysophosphatidylethanolamine (0:0/18:2) monarch-merged.owl owl:Class CHEBI:28936 biolink:NamedThing 2-acyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:138339 biolink:NamedThing 2-[(11R)-hydroxy-(5Z,8Z,12E,14Z)-icosatetraenoyl]-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:138361 biolink:NamedThing 2-[(5Z,13E,15S)-11alpha,15-dihydroxy-9-oxoprosta-5,13-dien-1-oyl]-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:138744 biolink:NamedThing 2-[(9S,11R)-epidioxy-(15S)-hydroperoxy-(5Z,13E)-prostadienoyl]-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:72741 biolink:NamedThing 2-arachidonyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:76231 biolink:NamedThing 2-oleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:91296 biolink:NamedThing lysophosphatidylethanolamine 18:2 monarch-merged.owl owl:Class CHEBI:23929 biolink:NamedThing episterol monarch-merged.owl owl:Class CHEBI:23521 biolink:NamedThing cytidine 5'-phosphate monarch-merged.owl cytidine 5'-phosphates chebi_ontology owl:Class CHEBI:17239 biolink:NamedThing CDP A pyrimidine ribonucleoside 5'-diphosphate having cytosine as the nucleobase. monarch-merged.owl cytidine 5'-(trihydrogen diphosphate)|Cytidine, 5'-(trihydrogen pyrophosphate)|Cytidine diphosphate|CYTIDINE-5'-DIPHOSPHATE|Cytidine 5'-diphosphate|CDP|Cytidine 5'-pyrophosphate|5'-CDP|Cytidine 5'-diphosphoric acid 0 C9H15N3O11P2 InChI=1S/C9H15N3O11P2/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1 ZWIADYZPOWUWEW-XVFCMESISA-N 403.17654 403.01818 Nc1ccn([C@@H]2O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]2O)c(=O)n1 DrugBank:DB04555|PDBeChem:CDP|PDBeChem:CDF|CAS:63-38-7|KEGG:C00112 CHEBI:13254|CHEBI:41451|CHEBI:3260|CHEBI:23519 chebi_ontology owl:Class CHEBI:17361 biolink:NamedThing cytidine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:17677 biolink:NamedThing CTP monarch-merged.owl owl:Class CHEBI:131783 biolink:NamedThing indolmycenate monarch-merged.owl owl:Class CHEBI:58398 biolink:NamedThing (2S)-2-hydroxyphytanate monarch-merged.owl owl:Class CHEBI:85637 biolink:NamedThing (2S)-2-hydroxytetradecanoate monarch-merged.owl owl:Class CHEBI:140594 biolink:NamedThing ethanediol derivative monarch-merged.owl owl:Class CHEBI:16997 biolink:NamedThing propane-1,2-diol The simplest member of the class of propane-1,2-diols, consisting of propane in which a hydrogen at position 1 and a hydrogen at position 2 are substituted by hydroxy groups. A colourless, viscous, hygroscopic, low-melting (-59degreeC) and high-boiling (188degreeC) liquid with low toxicity, it is used as a solvent, emulsifying agent, and antifreeze. monarch-merged.owl Propane-1,2-diol|methylethyl glycol|HOCH2CH(OH)Me|HOCH2CH(OH)CH3|methyl glycol|methylethylene glycol|1,2-Propylenglykol|monopropylene glycol|1,2-dihydroxypropane|isopropylene glycol|1,2-Propanediol|CH3CH(OH)CH2OH|MeCH(OH)CH2OH|PPD|propane-1,2-diol|alpha-propyleneglycol|Propylene glycol|2-hydroxypropanol 0 C3H8O2 InChI=1S/C3H8O2/c1-3(5)2-4/h3-5H,2H2,1H3 DNIAPMSPPWPWGF-UHFFFAOYSA-N 76.09442 76.05243 CC(O)CO PPDB:1304|Reaxys:1340498|Wikipedia:Propylene_glycol|Drug_Central:4024|PMID:18346395|PMID:16078503|KNApSAcK:C00007410|PMID:21616561|HMDB:HMDB0001881|VSDB:1304|PMID:18845115|DrugBank:DB01839|LINCS:LSM-36856|KEGG:D00078|KEGG:C00583|CAS:57-55-6|PMID:15665701 CHEBI:8469|CHEBI:14899 chebi_ontology owl:Class CHEBI:25189 biolink:NamedThing 1,4-dimercaptobutane-2,3-diol monarch-merged.owl owl:Class CHEBI:26288 biolink:NamedThing propanediol monarch-merged.owl chebi_ontology owl:Class CHEBI:27636 biolink:NamedThing L-glycol monarch-merged.owl owl:Class CHEBI:30742 biolink:NamedThing ethylene glycol A 1,2-glycol compound produced via reaction of ethylene oxide with water. monarch-merged.owl ethane-1,2-diol|HO-CH2-CH2-OH|Ethylene glycol|Ethanediol|ethylene glycol|Glycol|1,2-Ethanediol|Monoethylene glycol|1,2-Dihydroxyethane|2-Hydroxyethanol|1,2-ETHANEDIOL owl:Class CHEBI:41189 biolink:NamedThing butane-1,4-diol monarch-merged.owl owl:Class CHEBI:52682 biolink:NamedThing butane-1,2-diol monarch-merged.owl owl:Class CHEBI:75586 biolink:NamedThing 1,2-hexadecanediol monarch-merged.owl owl:Class CHEBI:83951 biolink:NamedThing (2E,6E,10E)-omega-hydroxyfarnesol monarch-merged.owl owl:Class CHEBI:83953 biolink:NamedThing omega-hydroxygeranylgeraniol monarch-merged.owl owl:Class CHEBI:17153 biolink:NamedThing propanal monarch-merged.owl owl:Class CHEBI:17158 biolink:NamedThing methylglyoxal A 2-oxo aldehyde derived from propanal. monarch-merged.owl 1,2-propanedione|2-oxopropanal|2-Oxopropanal|alpha-ketopropionaldehyde|2-oxopropionaldehyde|acetylformyl|2-Ketopropionaldehyde|Pyruvic aldehyde|CH3COCHO|methylglyoxal|acetylformaldehyde|Pyruvaldehyde|Methylglyoxal 0 C3H4O2 InChI=1S/C3H4O2/c1-3(5)2-4/h2H,1H3 AIJULSRZWUXGPQ-UHFFFAOYSA-N 72.06266 72.02113 [H]C(=O)C(C)=O CAS:78-98-8|PMID:10723098|PMID:10373458|PMID:20096340|PMID:17103372|PMID:19202315|PMID:24040205|PMID:23543734|PMID:26861824|PMID:23845007|PMID:22983866|PMID:24168114|PMID:9506998|PMID:11504881|KEGG:C00546|KNApSAcK:C00007562|Wikipedia:Methylglyoxal|PMID:15520007|Reaxys:906750|Beilstein:906750 CHEBI:25303|CHEBI:14599|CHEBI:6875|CHEBI:11643 chebi_ontology owl:Class CHEBI:17871 biolink:NamedThing 3-hydroxypropanal monarch-merged.owl owl:Class CHEBI:18090 biolink:NamedThing 3-aminopropanal monarch-merged.owl owl:Class CHEBI:18419 biolink:NamedThing lactaldehyde monarch-merged.owl owl:Class CHEBI:48943 biolink:NamedThing isobutyraldehyde monarch-merged.owl owl:Class CHEBI:133318 biolink:NamedThing hydroxy fatty aldehyde monarch-merged.owl owl:Class CHEBI:67191 biolink:NamedThing (2E,4E,6E)-7-hydroxy-4-methylhepta-2,4,6-trienal monarch-merged.owl owl:Class CHEBI:131847 biolink:NamedThing 2,4-didehydro-3-deoxy-L-rhamnonate monarch-merged.owl owl:Class CHEBI:134390 biolink:NamedThing beta-D-Delta(4)-GlcpA-(1->4)-beta-D-Glcp-(1->4)-alpha-L-Rhap-(1->3)-D-Glcp(1-) monarch-merged.owl owl:Class CHEBI:139158 biolink:NamedThing [(1->2)-alpha-L-rhamnosyl-(1->4)-alpha-D-galacturonosyl]n polyanion monarch-merged.owl owl:Class CHEBI:139159 biolink:NamedThing alpha-D-galacturonosyl-[(1->2)-alpha-L-rhamnosyl-(1->4)-alpha-D-galacturonosyl]n polyanion monarch-merged.owl owl:Class CHEBI:140335 biolink:NamedThing glucuronoxylan D-glucuronate polyanion monarch-merged.owl owl:Class CHEBI:24961 biolink:NamedThing ketoaldonate monarch-merged.owl ketoaldonate|ketoaldonates chebi_ontology owl:Class CHEBI:57541 biolink:NamedThing 2-(alpha-D-mannosyl)-D-glycerate monarch-merged.owl owl:Class CHEBI:57653 biolink:NamedThing 2-deoxy-D-gluconate monarch-merged.owl owl:Class CHEBI:57655 biolink:NamedThing 3-dehydro-L-gulonate monarch-merged.owl owl:Class CHEBI:57839 biolink:NamedThing 3-dehydro-2-deoxy-D-gluconate monarch-merged.owl owl:Class CHEBI:57989 biolink:NamedThing 2-dehydro-3-deoxy-D-galactonate monarch-merged.owl owl:Class CHEBI:58098 biolink:NamedThing 2-dehydro-3-deoxy-D-glucarate(2-) monarch-merged.owl owl:Class CHEBI:58371 biolink:NamedThing 2-dehydro-3-deoxy-L-rhamnonate monarch-merged.owl owl:Class CHEBI:58378 biolink:NamedThing 2-dehydro-3-deoxy-D-fuconate monarch-merged.owl owl:Class CHEBI:58658 biolink:NamedThing alpha-D-galacturonate monarch-merged.owl owl:Class CHEBI:63525 biolink:NamedThing D-mannosyl-D-glycerate monarch-merged.owl owl:Class CHEBI:65335 biolink:NamedThing 3-deoxy-D-manno-octulosonate monarch-merged.owl owl:Class CHEBI:71671 biolink:NamedThing aldonate(1-) A carbohydrate acid anion obtained by deprotonation of any aldonic acid. Major structure at pH 7.3 of aldonate compounds. monarch-merged.owl aldonates -1 (CH2O)n.C2H3O3 chebi_ontology owl:Class CHEBI:75545 biolink:NamedThing 2-keto-3-deoxy-L-galactonate monarch-merged.owl owl:Class CHEBI:76825 biolink:NamedThing cellobionate monarch-merged.owl owl:Class CHEBI:83383 biolink:NamedThing D-galactaro-1,5-lactone(1-) monarch-merged.owl owl:Class CHEBI:83384 biolink:NamedThing D-glucaro-1,5-lactone(1-) monarch-merged.owl owl:Class CHEBI:83435 biolink:NamedThing 3,6-anhydro-L-galactonate monarch-merged.owl owl:Class CHEBI:85311 biolink:NamedThing poly[(1->4)-beta-D-mannuronate] monarch-merged.owl owl:Class CHEBI:85317 biolink:NamedThing D-galactaro-1,4-lactone(1-) monarch-merged.owl owl:Class CHEBI:85336 biolink:NamedThing D-glucaro-1,4-lactone(1-) monarch-merged.owl owl:Class CHEBI:131857 biolink:NamedThing (3R)-farnesyl-2,3,5-trimethyl-6-oxido-4-oxocyclohexa-1,5-diene-1-carboxylate monarch-merged.owl owl:Class CHEBI:134186 biolink:NamedThing all-trans-4-oxoretinoate monarch-merged.owl owl:Class CHEBI:138341 biolink:NamedThing (R)-2-alkyl-3-oxoalkanoate monarch-merged.owl owl:Class CHEBI:138430 biolink:NamedThing (9R,13R)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoate monarch-merged.owl owl:Class CHEBI:138432 biolink:NamedThing 6-{(1S,5S)-4-oxo-5-[(2Z)-pent-2-en-1-yl]cyclopent-2-en-1-yl}hexanoate monarch-merged.owl owl:Class CHEBI:138809 biolink:NamedThing (3R)-3-hydroxy-4-oxobutanoate monarch-merged.owl owl:Class CHEBI:22731 biolink:NamedThing 3-oxo-3-phenylpropionate monarch-merged.owl owl:Class CHEBI:35974 biolink:NamedThing 4-oxo monocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:35976 biolink:NamedThing 6-oxo monocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:35979 biolink:NamedThing dioxo monocarboxylic acid anion monarch-merged.owl owl:Class CHEBI:57411 biolink:NamedThing (15Z)-12-oxophyto-10,15-dienoate monarch-merged.owl owl:Class CHEBI:58133 biolink:NamedThing 3-(imidazol-5-yl)pyruvate monarch-merged.owl owl:Class CHEBI:61150 biolink:NamedThing 2,3-dihydro-3-oxoanthranilate monarch-merged.owl owl:Class CHEBI:75309 biolink:NamedThing aklanonate monarch-merged.owl owl:Class CHEBI:77987 biolink:NamedThing aklanonate(2-) monarch-merged.owl owl:Class CHEBI:84897 biolink:NamedThing nogalonate(2-) monarch-merged.owl owl:Class CHEBI:84900 biolink:NamedThing 12-deoxynogalonate(1-) monarch-merged.owl owl:Class CHEBI:131858 biolink:NamedThing HETE anion An icosanoid anion arising from deprotonation of the carboxylic acid function of any hydroxyicosatetraenoic acid. monarch-merged.owl hydroxyicosatetraenoates|hydroxyeicosatetraenoates|hydroxyicosatetraenoate|hydroxyeicosatetraenoate|HETE anions chebi_ontology owl:Class CHEBI:131867 biolink:NamedThing hydroxydocosahexaenoate monarch-merged.owl owl:Class CHEBI:131874 biolink:NamedThing HEPE(1-) monarch-merged.owl owl:Class CHEBI:131877 biolink:NamedThing dihydroxyicosatetraenoate monarch-merged.owl owl:Class CHEBI:132024 biolink:NamedThing 19-HETrE(1-) monarch-merged.owl owl:Class CHEBI:132219 biolink:NamedThing 5(S),6(S)-epoxy-18(R)-hydroxy-(7E,9E,11Z,14Z,16E)-icosapentaenoate monarch-merged.owl owl:Class CHEBI:133539 biolink:NamedThing hydroxyicosatrienoate monarch-merged.owl owl:Class CHEBI:133654 biolink:NamedThing hydroxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133975 biolink:NamedThing Delta(6)-trans-12-epi-leukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:137328 biolink:NamedThing epoxy(hydroxy)icosatrienoate monarch-merged.owl owl:Class CHEBI:67152 biolink:NamedThing (2Z)-2-hydroxypenta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:76150 biolink:NamedThing (R)-2-hydroxy-alpha-linolenate monarch-merged.owl owl:Class CHEBI:77919 biolink:NamedThing (7R)-hydroxy-(5S,6S)-epoxy-(8Z,11Z,14Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:83343 biolink:NamedThing 12(R)-HETE(1-) monarch-merged.owl owl:Class CHEBI:84029 biolink:NamedThing (5Z,8Z,11Z)-14,15-dihydroxyicosatrienoate monarch-merged.owl owl:Class CHEBI:90680 biolink:NamedThing 12(S)-HETE(1-) monarch-merged.owl owl:Class CHEBI:90694 biolink:NamedThing 12(S)-HHTrE(1-) monarch-merged.owl owl:Class CHEBI:90718 biolink:NamedThing 12-HETE(1-) monarch-merged.owl owl:Class CHEBI:90820 biolink:NamedThing 11(R)-HEPE(1-) monarch-merged.owl owl:Class CHEBI:57560 biolink:NamedThing long-chain fatty acid anion A fatty acid anion with a chain length of C13 to C22. monarch-merged.owl a long-chain fatty acid|a long-chain carboxylate|long-chain fatty acid anions -1 CO2R 44.010 43.98983 [O-]C([*])=O CHEBI:13652 chebi_ontology owl:Class CHEBI:131958 biolink:NamedThing (13S,14S)-epoxy-(4Z,7Z,9E,11E,16Z,19Z)-docosahexaenoate monarch-merged.owl owl:Class CHEBI:132025 biolink:NamedThing 21-HDoHE(1-) monarch-merged.owl owl:Class CHEBI:132031 biolink:NamedThing 13-hydroxytetradecanoate monarch-merged.owl owl:Class CHEBI:132070 biolink:NamedThing eoxin A4(1-) monarch-merged.owl owl:Class CHEBI:132087 biolink:NamedThing 15(S)-HEPE(1-) monarch-merged.owl owl:Class CHEBI:133585 biolink:NamedThing epoxyoctadecanoate monarch-merged.owl owl:Class CHEBI:133586 biolink:NamedThing epoxyoctadecenoate monarch-merged.owl owl:Class CHEBI:133790 biolink:NamedThing linolenate monarch-merged.owl owl:Class CHEBI:133903 biolink:NamedThing 8(S),15(S)-DiHETE(1-) monarch-merged.owl owl:Class CHEBI:133931 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z)-19,20-epoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133932 biolink:NamedThing (4Z,7Z,10Z,13Z,19Z)-16,17-epoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133933 biolink:NamedThing (4Z,7Z,10Z,16Z,19Z)-13,14-epoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133934 biolink:NamedThing (4Z,7Z,13Z,16Z,19Z)-10,11-epoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:133935 biolink:NamedThing (7Z,10Z,13Z,16Z)-19,20-epoxydocosatetraenoate monarch-merged.owl owl:Class CHEBI:133936 biolink:NamedThing (7Z,10Z,13Z,19Z)-16,17-epoxydocosatetraenoate monarch-merged.owl owl:Class CHEBI:133937 biolink:NamedThing (7Z,10Z,16Z,19Z)-13,14-epoxydocosatetraenoate monarch-merged.owl owl:Class CHEBI:133938 biolink:NamedThing (7Z,13Z,16Z,19Z)-10,11-epoxydocosatetraenoate monarch-merged.owl owl:Class CHEBI:133948 biolink:NamedThing (4Z,7Z,11Z,13Z,15E,17S,19Z)-10,17-bis(hydroperoxy)docosahexaenoate monarch-merged.owl owl:Class CHEBI:133949 biolink:NamedThing (4Z,7Z,11Z,13Z,15E,17S)-10,17-bis(hydroperoxy)docosapentaenoate monarch-merged.owl owl:Class CHEBI:133950 biolink:NamedThing (7Z,11Z,13Z,15E,19Z)-10,17-bis(hydroperoxy)docosapentaenoate monarch-merged.owl owl:Class CHEBI:134051 biolink:NamedThing (8R,9E,11Z,14Z)-8-hydroperoxyicosatrienoate monarch-merged.owl owl:Class CHEBI:134052 biolink:NamedThing (8Z,11Z,14Z)-10-hydroperoxyicosatrienoate monarch-merged.owl owl:Class CHEBI:134053 biolink:NamedThing (8Z,12E,14Z)-11-hydroperoxyicosatrienoate monarch-merged.owl owl:Class CHEBI:134055 biolink:NamedThing (9Z,11Z,13S,15Z)-12,13-epoxyoctadecatrienoate monarch-merged.owl owl:Class CHEBI:134056 biolink:NamedThing (5Z,9E,11Z,14Z,17Z)-8-hydroperoxyicosapentaenoate monarch-merged.owl owl:Class CHEBI:136410 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19R,20S)-19,20-epoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:136411 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19S,20R)-19,20-epoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:138437 biolink:NamedThing (S)-3-hydroxytetradecanoate monarch-merged.owl owl:Class CHEBI:139188 biolink:NamedThing hydroxy fatty acid anion 14:0 monarch-merged.owl owl:Class CHEBI:139193 biolink:NamedThing 2-hydroxy fatty acid anion 20:0 monarch-merged.owl owl:Class CHEBI:139194 biolink:NamedThing hydroxy fatty acid anion 20:0 monarch-merged.owl owl:Class CHEBI:14030 biolink:NamedThing crepenynate monarch-merged.owl owl:Class CHEBI:140991 biolink:NamedThing omega-methyl-long-chain fatty acid anion monarch-merged.owl owl:Class CHEBI:231086 biolink:NamedThing Octadec-9-enoic acid anion monarch-merged.owl owl:Class CHEBI:23858 biolink:NamedThing behenate monarch-merged.owl owl:Class CHEBI:25626 biolink:NamedThing octadecadienoate A long-chain, unsaturated fatty acid anion formed by deprotonation of the carboxy group of any octadecadienoic acid; major species at pH 7.3. monarch-merged.owl octadecadienoate -1 C18H31O2 279.4393 279.23241 [O-]C([*])=O chebi_ontology owl:Class CHEBI:25629 biolink:NamedThing octadecanoate A fatty acid anion 18:0 that is the conjugate base of octadecanoic acid (stearic acid). Stearates have a variety of uses in the pharmaceutical industry. monarch-merged.owl octadecanoic acid, ion(1-)|Stearate|stearic acid, ion(1-)|octadecanoate|CH3-[CH2]16-COO(-)|stearate -1 C18H35O2 InChI=1S/C18H36O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h2-17H2,1H3,(H,19,20)/p-1 QIQXTHQIDYTFRH-UHFFFAOYSA-M 283.470 283.26425 C(CCCCCCCCCC)CCCCCCC(=O)[O-] PMID:19184617|PMID:3180776|Gmelin:344065|MetaCyc:STEARIC_ACID|CAS:646-29-7|PMID:16401590|KEGG:C01530|PMID:7452460|Reaxys:3590530|Beilstein:3590530 CHEBI:231588 chebi_ontology owl:Class CHEBI:30807 biolink:NamedThing tetradecanoate A long-chain fatty acid anion that is the conjugate base of myristic acid; major species at pH 7.3. monarch-merged.owl tetradecoate|n-tetradecan-1-oate|1-tetradecanecarboxylate|CH3-[CH2]12-COO(-)|tetradecanoate|myristate|n-tetradecoate|Tetradecanoate -1 C14H27O2 InChI=1S/C14H28O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14(15)16/h2-13H2,1H3,(H,15,16)/p-1 TUNFSRHWOTWDNC-UHFFFAOYSA-M 227.364 227.20165 C(CCCCCCCC)CCCCC([O-])=O KEGG:C06424|Reaxys:3589340|Beilstein:3589340|Gmelin:335122 CHEBI:35292 chebi_ontology owl:Class CHEBI:30825 biolink:NamedThing elaidate monarch-merged.owl owl:Class CHEBI:32360 biolink:NamedThing icosanoate monarch-merged.owl owl:Class CHEBI:32366 biolink:NamedThing margarate monarch-merged.owl owl:Class CHEBI:32375 biolink:NamedThing petroselinate monarch-merged.owl owl:Class CHEBI:32393 biolink:NamedThing erucate monarch-merged.owl owl:Class CHEBI:32395 biolink:NamedThing arachidonate A long-chain fatty acid anion resulting from the removal of a proton from the carboxy group of arachidonic acid. monarch-merged.owl (20:4n6)|(5Z,8Z,11Z,14Z)-eicosatetraenoate|(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate -1 C20H31O2 InChI=1S/C20H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h6-7,9-10,12-13,15-16H,2-5,8,11,14,17-19H2,1H3,(H,21,22)/p-1/b7-6-,10-9-,13-12-,16-15- YZXBAPSDXZZRGB-DOFZRALJSA-M 303.45894 303.23295 CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC([O-])=O Beilstein:5439048|MetaCyc:ARACHIDONIC_ACID|Gmelin:419207|PMID:18772128 CHEBI:13852|CHEBI:22607 chebi_ontology owl:Class CHEBI:32414 biolink:NamedThing cis-parinarate monarch-merged.owl owl:Class CHEBI:32426 biolink:NamedThing gondoate monarch-merged.owl owl:Class CHEBI:36434 biolink:NamedThing octadecatrienoate monarch-merged.owl owl:Class CHEBI:36438 biolink:NamedThing (9Z,13S,15Z)-12,13-epoxyoctadeca-9,11,15-trienoate monarch-merged.owl owl:Class CHEBI:37257 biolink:NamedThing phytanate A branched-chain saturated fatty acid anion that is the conjugate base of phytanic acid, arising from deprotonation of the carboxylic acid group. monarch-merged.owl 3,7,11,15-tetramethylhexadecanoate|3,7,11,15-tetramethylpalmitate|phytanate anion -1 C20H39O2 InChI=1S/C20H40O2/c1-16(2)9-6-10-17(3)11-7-12-18(4)13-8-14-19(5)15-20(21)22/h16-19H,6-15H2,1-5H3,(H,21,22)/p-1 RLCKHJSFHOZMDR-UHFFFAOYSA-M 311.52246 311.29555 CC(C)CCCC(C)CCCC(C)CCCC(C)CC([O-])=O Reaxys:3669982|Beilstein:3669982|KEGG:C01607|PMID:5130448 CHEBI:14834|CHEBI:26109 chebi_ontology owl:Class CHEBI:50498 biolink:NamedThing vaccenate(1-) monarch-merged.owl owl:Class CHEBI:528881 biolink:NamedThing (9Z,12Z,15Z)-octadeca-9,12,15-trienoate monarch-merged.owl owl:Class CHEBI:60957 biolink:NamedThing colneleate monarch-merged.owl owl:Class CHEBI:60960 biolink:NamedThing colnelenate monarch-merged.owl owl:Class CHEBI:61330 biolink:NamedThing icosapentaenoate monarch-merged.owl owl:Class CHEBI:62920 biolink:NamedThing icosatetraenoate A polyunsaturated fatty acid anion that is the conjugate base of icosatetraenoic acid, obtained by deprotonation of the carboxy group. Major species at pH 7.3. monarch-merged.owl eicosatetranoic acid anion|icosatetranoate|icosatetranoic acid anions|eicosatetranoic acid anions|eicosatetraenoate|eicosatetranoates|icosatetranoic acid anion|icosatetranoates -1 C20H31O2 303.45894 303.23241 [O-]C([*])=O CHEBI:78071 chebi_ontology owl:Class CHEBI:62938 biolink:NamedThing hepoxilin anion monarch-merged.owl owl:Class CHEBI:65097 biolink:NamedThing 2-hydroxyhexadecanoate monarch-merged.owl owl:Class CHEBI:70826 biolink:NamedThing isopentadecanoate monarch-merged.owl owl:Class CHEBI:70838 biolink:NamedThing isoheptadecanoate monarch-merged.owl owl:Class CHEBI:71449 biolink:NamedThing hexadec-9-enoate monarch-merged.owl owl:Class CHEBI:71563 biolink:NamedThing all-cis-8,11,14,17-icosatetraenoate monarch-merged.owl owl:Class CHEBI:71589 biolink:NamedThing all-cis-icosa-8,11,14-trienoate monarch-merged.owl owl:Class CHEBI:71590 biolink:NamedThing (3E,5Z)-tetradecadienoate monarch-merged.owl owl:Class CHEBI:72745 biolink:NamedThing (E)-hexadec-2-enoate monarch-merged.owl owl:Class CHEBI:76152 biolink:NamedThing (8Z,11Z,14Z)-heptadecatrienoate monarch-merged.owl owl:Class CHEBI:76197 biolink:NamedThing sapienate monarch-merged.owl owl:Class CHEBI:76298 biolink:NamedThing 22-oxodocosanoate monarch-merged.owl owl:Class CHEBI:76613 biolink:NamedThing 3-hydroxypalmitate monarch-merged.owl owl:Class CHEBI:76614 biolink:NamedThing 3-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:76625 biolink:NamedThing 11,12-EET(1-) monarch-merged.owl owl:Class CHEBI:76633 biolink:NamedThing 17,18-EETeTr(1-) monarch-merged.owl owl:Class CHEBI:76645 biolink:NamedThing 20-oxoarachidonate monarch-merged.owl owl:Class CHEBI:76709 biolink:NamedThing 3-hydroxyicosanoate monarch-merged.owl owl:Class CHEBI:76722 biolink:NamedThing 2-hydroxybehenate monarch-merged.owl owl:Class CHEBI:76724 biolink:NamedThing 2-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:77200 biolink:NamedThing (10E,12Z)-octadecadienoate monarch-merged.owl owl:Class CHEBI:77219 biolink:NamedThing (9Z,12Z)-hexadecadienoate monarch-merged.owl owl:Class CHEBI:77220 biolink:NamedThing (11Z,14Z)-icosadienoate monarch-merged.owl owl:Class CHEBI:77225 biolink:NamedThing all-cis-docosa-7,10,13,16-tetraenoate monarch-merged.owl owl:Class CHEBI:77226 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate monarch-merged.owl owl:Class CHEBI:77268 biolink:NamedThing pristanate monarch-merged.owl owl:Class CHEBI:78043 biolink:NamedThing (5Z,8Z,11Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:78050 biolink:NamedThing octadecatetraenoate monarch-merged.owl owl:Class CHEBI:78053 biolink:NamedThing docosapentaenoate monarch-merged.owl owl:Class CHEBI:78060 biolink:NamedThing docosahexaenoate A polyunsaturated fatty acid anion that is the conjugate base of docosahexaenoic acid, obtained by deprotonation of the carboxy group; major species at pH 7.3. monarch-merged.owl -1 C22H31O2 327.4803 327.23241 [O-]C([*])=O chebi_ontology owl:Class CHEBI:78069 biolink:NamedThing docosatetraenoate monarch-merged.owl owl:Class CHEBI:78072 biolink:NamedThing icosatrienoate monarch-merged.owl owl:Class CHEBI:78073 biolink:NamedThing icosadienoate monarch-merged.owl owl:Class CHEBI:78075 biolink:NamedThing icosenoate monarch-merged.owl owl:Class CHEBI:78076 biolink:NamedThing docosenoate monarch-merged.owl owl:Class CHEBI:78095 biolink:NamedThing hexadecenoate monarch-merged.owl owl:Class CHEBI:78096 biolink:NamedThing hexadecadienoate monarch-merged.owl owl:Class CHEBI:78795 biolink:NamedThing pentadecanoate monarch-merged.owl owl:Class CHEBI:78892 biolink:NamedThing fatty acid anion 19:0 monarch-merged.owl owl:Class CHEBI:78896 biolink:NamedThing tetradecenoate monarch-merged.owl owl:Class CHEBI:7896 biolink:NamedThing hexadecanoate A long-chain fatty acid anion that is the conjugate base of hexadecanoic acid (palmitic acid); major species at pH 7.3. monarch-merged.owl palmitate|pentadecanecarboxylate|Hexadecanoic acid, ion(1-)|1-hexyldecanoate|(16:0)|n-hexadecoate|n-hexadecanoate|1-pentadecanecarboxylate|hexadecanoate|CH3-[CH2]14-COO(-) -1 C16H31O2 InChI=1S/C16H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h2-15H2,1H3,(H,17,18)/p-1 IPCSVZSSVZVIGE-UHFFFAOYSA-M 255.41610 255.23295 CCCCCCCCCCCCCCCC([O-])=O Reaxys:3589907|Beilstein:3589907|MetaCyc:PALMITATE|Gmelin:344266|CAS:143-20-4|HMDB:HMDB0000220 CHEBI:231736 chebi_ontology owl:Class CHEBI:83670 biolink:NamedThing 9-PAHSA(1-) monarch-merged.owl owl:Class CHEBI:83677 biolink:NamedThing 12-PAHSA(1-) monarch-merged.owl owl:Class CHEBI:84023 biolink:NamedThing 9(10)-EpOME(1-) monarch-merged.owl owl:Class CHEBI:84024 biolink:NamedThing 14,15-EET(1-) monarch-merged.owl owl:Class CHEBI:84025 biolink:NamedThing 8,9-EET(1-) monarch-merged.owl owl:Class CHEBI:84026 biolink:NamedThing vernolate monarch-merged.owl owl:Class CHEBI:84027 biolink:NamedThing 9,10-DiHOME(1-) monarch-merged.owl owl:Class CHEBI:84028 biolink:NamedThing 12,13-DiHOME(1-) monarch-merged.owl owl:Class CHEBI:84175 biolink:NamedThing 2-methylhexadecanoate monarch-merged.owl owl:Class CHEBI:84176 biolink:NamedThing 12-methyloctadecanoate monarch-merged.owl owl:Class CHEBI:84193 biolink:NamedThing isomyristate monarch-merged.owl owl:Class CHEBI:84197 biolink:NamedThing 3-hydroxytetradecanoate monarch-merged.owl owl:Class CHEBI:84201 biolink:NamedThing 12-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:84335 biolink:NamedThing 2-hydroxymyristate monarch-merged.owl owl:Class CHEBI:85150 biolink:NamedThing (9Z)-12-hydroxyoctadec-9-enoate monarch-merged.owl owl:Class CHEBI:85152 biolink:NamedThing (9E)-12-hydroxyoctadec-9-enoate monarch-merged.owl owl:Class CHEBI:85635 biolink:NamedThing (R)-3-hydroxytetradecanoate monarch-merged.owl owl:Class CHEBI:90582 biolink:NamedThing hexadecatrienoate monarch-merged.owl owl:Class CHEBI:90810 biolink:NamedThing 5(S),11(R)-DiHETE(1-) monarch-merged.owl owl:Class CHEBI:90818 biolink:NamedThing 18(R)-HEPE(1-) monarch-merged.owl owl:Class CHEBI:90819 biolink:NamedThing 15(R)-HEPE(1-) monarch-merged.owl owl:Class CHEBI:131865 biolink:NamedThing EET(1-) monarch-merged.owl owl:Class CHEBI:131873 biolink:NamedThing EpETE(1-) monarch-merged.owl owl:Class CHEBI:133309 biolink:NamedThing 12-dehydro-leukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:133319 biolink:NamedThing 10,11-dihydro-12-oxoleukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:134054 biolink:NamedThing (5Z,8R,9Z,11Z,14Z)-8,9-epoxyicosatetraenoate monarch-merged.owl owl:Class CHEBI:62942 biolink:NamedThing leukotriene anion A eicosanoid anion that is the conjugate base of a leukotriene. monarch-merged.owl leukotriene anions chebi_ontology owl:Class CHEBI:62943 biolink:NamedThing prostanoid anion An icosanoid anion that is the conjugate base of a prostanoid. monarch-merged.owl prostanoid anions chebi_ontology owl:Class CHEBI:78832 biolink:NamedThing (5Z,8Z,11Z,13E)-15-HETE(1-) monarch-merged.owl owl:Class CHEBI:78833 biolink:NamedThing 11-HETE(1-) monarch-merged.owl owl:Class CHEBI:76567 biolink:NamedThing polyunsaturated fatty acid anion Any unsaturated fatty acid anion containing more than one C-C unsaturated bond. Major species at pH 7.3. monarch-merged.owl PUFA|polyunsaturated fatty acid anions chebi_ontology owl:Class CHEBI:60025 biolink:NamedThing (5Z,7E,9E,14Z,17Z)-icosapentaenoate monarch-merged.owl owl:Class CHEBI:67022 biolink:NamedThing lipoxin anion monarch-merged.owl owl:Class CHEBI:67260 biolink:NamedThing geranate monarch-merged.owl owl:Class CHEBI:77227 biolink:NamedThing (9Z,12Z,15Z,18Z)-tetracosatetraenoate monarch-merged.owl owl:Class CHEBI:78051 biolink:NamedThing hexacosapentaenoate monarch-merged.owl owl:Class CHEBI:78052 biolink:NamedThing tetracosapentaenoate monarch-merged.owl owl:Class CHEBI:78054 biolink:NamedThing hexacosatetraenoate monarch-merged.owl owl:Class CHEBI:78056 biolink:NamedThing tetracosahexaenoate monarch-merged.owl owl:Class CHEBI:78057 biolink:NamedThing hexacosahexaenoate monarch-merged.owl owl:Class CHEBI:78061 biolink:NamedThing tetracosatetraenoate monarch-merged.owl owl:Class CHEBI:78062 biolink:NamedThing octacosatetraenoate monarch-merged.owl owl:Class CHEBI:78063 biolink:NamedThing octacosapentaenoate monarch-merged.owl owl:Class CHEBI:78079 biolink:NamedThing triacontatetraenoate monarch-merged.owl owl:Class CHEBI:78080 biolink:NamedThing triacontahexaenoate monarch-merged.owl owl:Class CHEBI:78081 biolink:NamedThing dotriacontatetraenoate monarch-merged.owl owl:Class CHEBI:78082 biolink:NamedThing dotriacontapentaenoate monarch-merged.owl owl:Class CHEBI:78083 biolink:NamedThing dotriacontahexaenoate monarch-merged.owl owl:Class CHEBI:78086 biolink:NamedThing tetratriacontatetraenoate monarch-merged.owl owl:Class CHEBI:78087 biolink:NamedThing tetratriacontapentaenoate monarch-merged.owl owl:Class CHEBI:78088 biolink:NamedThing tetratriacontahexaenoate monarch-merged.owl owl:Class CHEBI:78089 biolink:NamedThing hexatriacontatetraenoate monarch-merged.owl owl:Class CHEBI:78091 biolink:NamedThing hexatriacontapentaenoate monarch-merged.owl owl:Class CHEBI:78092 biolink:NamedThing hexatriacontahexaenoate monarch-merged.owl owl:Class CHEBI:78093 biolink:NamedThing octatriacontatetraenoate monarch-merged.owl owl:Class CHEBI:78094 biolink:NamedThing octatriacontapentaenoate monarch-merged.owl owl:Class CHEBI:83274 biolink:NamedThing juvenile hormone III carboxylate monarch-merged.owl owl:Class CHEBI:83276 biolink:NamedThing (2E,6E)-farnesoate monarch-merged.owl owl:Class CHEBI:83952 biolink:NamedThing (2E,6E,10E)-geranylgeranate monarch-merged.owl owl:Class CHEBI:131860 biolink:NamedThing octadecanoid anion An unsaturated fatty acid anion obtained by the deprotonation of the carboxy group of any octadecanoid. monarch-merged.owl octadecanoid anions|anionic octadecanoids|anionic octadecanoid chebi_ontology owl:Class CHEBI:2580 biolink:NamedThing unsaturated fatty acid anion Any fatty acid anion containing at least one C-C unsaturated bond; formed by deprotonation of the carboxylic acid moiety. monarch-merged.owl chebi_ontology owl:Class CHEBI:143529 biolink:NamedThing (2E)-decenoate monarch-merged.owl owl:Class CHEBI:36029 biolink:NamedThing butenoate monarch-merged.owl owl:Class CHEBI:36030 biolink:NamedThing pentenoate monarch-merged.owl owl:Class CHEBI:61380 biolink:NamedThing acetylenic fatty acid anion monarch-merged.owl owl:Class CHEBI:78049 biolink:NamedThing octadecenoate monarch-merged.owl owl:Class CHEBI:82680 biolink:NamedThing monounsaturated fatty acid anion Any unsaturated fatty acid anion with one double or triple bond in the fatty acid chain. monarch-merged.owl monounsaturated fatty acid anions -1 CO2R 44.010 43.98983 [O-]C([*])=O chebi_ontology owl:Class CHEBI:131862 biolink:NamedThing HPODE(1-) An octadecanoid anion anion obtained by the deprotonation of the carboxy group of any hydroperoxyoctadecadienoic acid. monarch-merged.owl HPODE anion|HPODE anions|hydroperoxyoctadecadienoates|hydroperoxyoctadecadienoate chebi_ontology owl:Class CHEBI:131868 biolink:NamedThing HPDHE(1-) monarch-merged.owl owl:Class CHEBI:137410 biolink:NamedThing (13R)-S-cysteinyl-(14S)-hydroxy-(4Z,7Z,9E,11E,16Z,19Z)-docosahexaenoate(1-) monarch-merged.owl owl:Class CHEBI:157771 biolink:NamedThing hydroperoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:157772 biolink:NamedThing epoxydocosatetraenoate monarch-merged.owl owl:Class CHEBI:157773 biolink:NamedThing epoxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:157774 biolink:NamedThing epoxydocosahexaenoate monarch-merged.owl owl:Class CHEBI:25413 biolink:NamedThing monounsaturated fatty acid Any fatty acid with one double or triple bond in the fatty acid chain and singly bonded carbon atoms in the rest of the chain. MUFAs have positive effects on the cardiovascular system, and in diabetes treatment. monarch-merged.owl monounsaturated fatty acids|MUFA|MUFAs PMID:12936956|PMID:10584045 chebi_ontology owl:Class CHEBI:132538 biolink:NamedThing fatty acid 20:1 monarch-merged.owl owl:Class CHEBI:132541 biolink:NamedThing fatty acid 22:1 monarch-merged.owl owl:Class CHEBI:22959 biolink:NamedThing butenoic acid monarch-merged.owl owl:Class CHEBI:23867 biolink:NamedThing dodecenoic acid monarch-merged.owl owl:Class CHEBI:24580 biolink:NamedThing hexenoic acid monarch-merged.owl owl:Class CHEBI:25897 biolink:NamedThing pentenoic acid Any C5, straight-chain, monounsaturated fatty acid. monarch-merged.owl pentenoic acids|pentenoic acid|C5:1 0 C5H8O2 100.116 100.05243 chebi_ontology owl:Class CHEBI:36003 biolink:NamedThing decenoic acid monarch-merged.owl owl:Class CHEBI:36032 biolink:NamedThing tetracosenoic acid monarch-merged.owl owl:Class CHEBI:39448 biolink:NamedThing undecenoic acid monarch-merged.owl owl:Class CHEBI:78865 biolink:NamedThing hexacosenoic acid monarch-merged.owl owl:Class CHEBI:78055 biolink:NamedThing hexacosenoate monarch-merged.owl owl:Class CHEBI:78068 biolink:NamedThing tetracosenoate monarch-merged.owl owl:Class CHEBI:58953 biolink:NamedThing saturated fatty acid anion Any fatty acid anion in which there is no C-C unsaturation. monarch-merged.owl saturated fatty acid anions chebi_ontology owl:Class CHEBI:58954 biolink:NamedThing straight-chain saturated fatty acid anion Any saturated fatty acid anion lacking a carbon side-chain. monarch-merged.owl straight-chain saturated fatty acid anions chebi_ontology owl:Class CHEBI:78113 biolink:NamedThing fatty acid anion 3:0 Any saturated fatty acid anion containing 3 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3. monarch-merged.owl fatty acid 3:0 -1 C3H5O2 73.07060 73.02895 [O-]C([*])=O chebi_ontology owl:Class CHEBI:78115 biolink:NamedThing fatty acid anion 4:0 Any saturated fatty acid anion containing 4 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3. monarch-merged.owl fatty acid 4:0 -1 C4H7O2 87.09718 87.04460 [O-]C([*])=O chebi_ontology owl:Class CHEBI:78117 biolink:NamedThing fatty acid anion 8:0 monarch-merged.owl owl:Class CHEBI:78118 biolink:NamedThing fatty acid anion 10:0 monarch-merged.owl owl:Class CHEBI:78119 biolink:NamedThing fatty acid anion 12:0 monarch-merged.owl owl:Class CHEBI:78121 biolink:NamedThing fatty acid anion 14:0 Any saturated fatty acid anion containing 14 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3. monarch-merged.owl fatty acid 14:0 -1 C14H27O2 227.36298 227.20111 [O-]C([*])=O chebi_ontology owl:Class CHEBI:78122 biolink:NamedThing fatty acid anion 15:0 monarch-merged.owl owl:Class CHEBI:78123 biolink:NamedThing fatty acid anion 16:0 Any saturated fatty acid anion containing 16 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3. monarch-merged.owl fatty acid 16:0 -1 C16H31O2 255.41610 255.23241 [O-]C([*])=O chebi_ontology owl:Class CHEBI:78124 biolink:NamedThing fatty acid anion 17:0 monarch-merged.owl owl:Class CHEBI:78125 biolink:NamedThing fatty acid anion 18:0 Any saturated fatty acid anion containing 18 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3. monarch-merged.owl fatty acid 18:0 -1 C18H35O2 283.46930 283.26371 [O-]C([*])=O chebi_ontology owl:Class CHEBI:78126 biolink:NamedThing fatty acid anion 20:0 monarch-merged.owl owl:Class CHEBI:78127 biolink:NamedThing fatty acid anion 22:0 monarch-merged.owl owl:Class CHEBI:78128 biolink:NamedThing fatty acid anion 24:0 monarch-merged.owl owl:Class CHEBI:78129 biolink:NamedThing fatty acid anion 26:0 monarch-merged.owl owl:Class CHEBI:78130 biolink:NamedThing fatty acid anion 28:0 monarch-merged.owl owl:Class CHEBI:78131 biolink:NamedThing fatty acid anion 30:0 monarch-merged.owl owl:Class CHEBI:88081 biolink:NamedThing fatty acid anion 23:0 monarch-merged.owl owl:Class CHEBI:131889 biolink:NamedThing 11-HEPE monarch-merged.owl owl:Class CHEBI:72801 biolink:NamedThing 5-HEPE monarch-merged.owl owl:Class CHEBI:72802 biolink:NamedThing 18-HEPE monarch-merged.owl owl:Class CHEBI:76959 biolink:NamedThing 19-HEPE monarch-merged.owl owl:Class CHEBI:131894 biolink:NamedThing N-arachidonoylethanolamine phosphate(2-) monarch-merged.owl owl:Class CHEBI:50860 biolink:NamedThing organic molecular entity Any molecular entity that contains carbon. monarch-merged.owl organic molecular entities|organic entity|organic compounds CHEBI:33244|CHEBI:25700 chebi_ontology owl:Class CHEBI:132368 biolink:NamedThing glucuronate acceptor monarch-merged.owl owl:Class CHEBI:133393 biolink:NamedThing prostaglandin B1(1-) monarch-merged.owl owl:Class CHEBI:133421 biolink:NamedThing prostaglandin F1alpha (1-) monarch-merged.owl owl:Class CHEBI:136655 biolink:NamedThing 13(R)-HODE(1-) monarch-merged.owl owl:Class CHEBI:138145 biolink:NamedThing 1,2-di-[(9Z)-hexadecenoyl]-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:138267 biolink:NamedThing hexanoyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:138396 biolink:NamedThing OPC8-CoA (4-) monarch-merged.owl owl:Class CHEBI:139094 biolink:NamedThing 2'-deoxyribose 5'-monophosphate residue monarch-merged.owl owl:Class CHEBI:140379 biolink:NamedThing an aldopyranose monarch-merged.owl owl:Class CHEBI:140380 biolink:NamedThing an aldono-1,5-lactone monarch-merged.owl owl:Class CHEBI:140446 biolink:NamedThing ricinoleoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:140527 biolink:NamedThing 1,2-dihexanoyl-3-oleoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:140532 biolink:NamedThing N-arachidonoyl-1,2-diacyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:140606 biolink:NamedThing 5,10-methylenetetrahydrosulfopterin monarch-merged.owl owl:Class CHEBI:140614 biolink:NamedThing alpha-D-galactosyl-(1->4)-N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-Ceramide monarch-merged.owl owl:Class CHEBI:140615 biolink:NamedThing alpha-D-galactosyl-(1->4)-N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-N-acylsphingosine monarch-merged.owl owl:Class CHEBI:140616 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-Ceramide monarch-merged.owl owl:Class CHEBI:140617 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-N-acylsphingosine monarch-merged.owl owl:Class CHEBI:140619 biolink:NamedThing alpha-D-galactosyl-(1->4)-N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide monarch-merged.owl owl:Class CHEBI:140620 biolink:NamedThing alpha-D-galactosyl-(1->4)-N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-N-acetyl-beta-D-galactosaminyl-(1->3)-alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-N-acylsphingosine monarch-merged.owl owl:Class CHEBI:140623 biolink:NamedThing Monosialyl-Gb5(1-) monarch-merged.owl owl:Class CHEBI:140624 biolink:NamedThing Disialosyl Gb5(2-) monarch-merged.owl owl:Class CHEBI:140647 biolink:NamedThing (2S)-3-(4-hydroxyphenyl)-2-isocyanopropanoate monarch-merged.owl owl:Class CHEBI:140648 biolink:NamedThing (2E)-3-(4-hydroxyphenyl)-2-isocyanoprop-2-enoate monarch-merged.owl owl:Class CHEBI:140650 biolink:NamedThing 4-[(E)-2-isocyanoethenyl]phenol monarch-merged.owl owl:Class CHEBI:140652 biolink:NamedThing (2S)-3-(1H-indol-3-yl)-2-isocyanopropanoate monarch-merged.owl owl:Class CHEBI:140657 biolink:NamedThing N-acyl-S-1,2-diacyl-sn-glyceryl-L-cysteine residue monarch-merged.owl owl:Class CHEBI:140714 biolink:NamedThing alpha-L-Fuc-(1->2)-beta-D-Gal-(1->3)-beta-D-GalNAc-(1->3)-alpha-D-Gal-(1->4)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer monarch-merged.owl owl:Class CHEBI:140725 biolink:NamedThing 4-Imidazolone-5-propanoate(1-) monarch-merged.owl owl:Class CHEBI:140743 biolink:NamedThing alpha-D-Gal-(1->3)-alpha-D-Gal-(1->4)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer monarch-merged.owl owl:Class CHEBI:140817 biolink:NamedThing alpha-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer monarch-merged.owl owl:Class CHEBI:141140 biolink:NamedThing medium-chain fatty acyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:141697 biolink:NamedThing N-acetyl-alpha-neuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[N-acetyl-alpha-neuraminosyl-(2->6)]-N-acetyl-beta-D-galactosaminyl-(1->4)-[N-acetyl-alpha-neuraminosyl-(2->8)-N-acetyl-alpha-neuraminosyl-(2->8)-N-acetyl-alpha-neuraminosyl-(2->3)]-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(5-) monarch-merged.owl owl:Class CHEBI:141711 biolink:NamedThing N-acetyl-alpha-neuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[N-acetyl-alpha-neuraminosyl-(2->6)]-N-acetyl-beta-D-galactosaminyl-(1->4)-[N-acetyl-alpha-neuraminosyl-(2->8)-N-acetyl-alpha-neuraminosyl-(2->3)]-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(4-) monarch-merged.owl owl:Class CHEBI:141724 biolink:NamedThing N-acetyl-alpha-neuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[N-acetyl-alpha-neuraminosyl-(2->6)]-N-acetyl-beta-D-galactosaminyl-(1->4)-[N-acetyl-alpha-neuraminosyl-(2->3)]-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(3-) monarch-merged.owl owl:Class CHEBI:141743 biolink:NamedThing beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminyl-(1->4)-[N-acetyl-alpha-neuraminosyl-(2->8)-N-acetyl-alpha-neuraminosyl-(2->8)-N-acetyl-alpha-neuraminosyl-(2->3)]-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(3-) monarch-merged.owl owl:Class CHEBI:141748 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->4)-[N-acetyl-alpha-neuraminosyl-(2->8)-N-acetyl-alpha-neuraminosyl-(2->8)-N-acetyl-alpha-neuraminosyl-(2->3)]-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(3-) monarch-merged.owl owl:Class CHEBI:142361 biolink:NamedThing purines 2'-deoxy-D-ribonucleoside monarch-merged.owl owl:Class CHEBI:142582 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(1-) monarch-merged.owl owl:Class CHEBI:142587 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide monarch-merged.owl owl:Class CHEBI:142594 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(2-) monarch-merged.owl owl:Class CHEBI:142607 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(1-) monarch-merged.owl owl:Class CHEBI:142626 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(2-) monarch-merged.owl owl:Class CHEBI:143084 biolink:NamedThing organometalloidal compound monarch-merged.owl owl:Class CHEBI:143087 biolink:NamedThing 1-stearoyl-2-(9,10-epoxyoctadecanoyl)-sn-glycero-3-phospho-L-serine(1-) monarch-merged.owl owl:Class CHEBI:143092 biolink:NamedThing 1-palmitoyl-2-(9,10-epoxyoctadecanoyl)-sn-glycero-3-phospho-L-serine(1-) monarch-merged.owl owl:Class CHEBI:143593 biolink:NamedThing beta-galactosylceramide monarch-merged.owl owl:Class CHEBI:143813 biolink:NamedThing 1-radyl,2-acyl-sn-glycero-3-phospho-(1D-myo-2-acyl-inositol)(1-) A phosphatidylinositol where R1 can be an alkyl or an acyl chain and 2R2 is an acyl chain. monarch-merged.owl 1-radyl,2-acyl-sn-glycero-3-phospho-(1D-myo-2-acyl-inositol) -1 C10H16O12PR2 359.201 359.03794 [C@@H]1([C@@H]([C@@H]([C@@H]([C@H]([C@@H]1O)O)O)O)OP(OC[C@H](CO*)OC(=O)*)(=O)[O-])O PMID:9463366 chebi_ontology owl:Class CHEBI:143815 biolink:NamedThing N-acetyl-alpha-D-glucosaminyl-(1->6)-(phosphatidyl)-(1-radyl,2-acyl-sn-glycero-3-phospho)-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:143816 biolink:NamedThing alpha-D-glucosaminyl-(1->6)-(phosphatidyl)-(1-radyl,2-acyl-sn-glycero-3-phospho)-1D-myo-inositol zwitterion monarch-merged.owl owl:Class CHEBI:144315 biolink:NamedThing 1-radyl-2-acyl-sn-glycerolipid monarch-merged.owl owl:Class CHEBI:144368 biolink:NamedThing 1,2-diacyl-sn-glycerolipid monarch-merged.owl owl:Class CHEBI:144378 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide monarch-merged.owl owl:Class CHEBI:144542 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-[alpha-L-fucosyl-(1->2)]-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide monarch-merged.owl owl:Class CHEBI:144544 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-[alpha-L-fucosyl-(1->2)]-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(d18:0) monarch-merged.owl owl:Class CHEBI:144711 biolink:NamedThing N-stearoyl-sphingoid base monarch-merged.owl owl:Class CHEBI:144712 biolink:NamedThing N-(very-long-chain fatty acyl)-sphingoid base monarch-merged.owl owl:Class CHEBI:144713 biolink:NamedThing N-(ultra-long-chain-acyl)-sphingoid base monarch-merged.owl owl:Class CHEBI:144748 biolink:NamedThing beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide monarch-merged.owl owl:Class CHEBI:144774 biolink:NamedThing linoleoyl containing 1,2,3-triacyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:144784 biolink:NamedThing omega-hydroxy-ultra-long chain fatty acylceramide monarch-merged.owl owl:Class CHEBI:144785 biolink:NamedThing omega-linoleoyloxy-O-ultra-long chain acylceramide monarch-merged.owl owl:Class CHEBI:149779 biolink:NamedThing Mannogen monarch-merged.owl owl:Class CHEBI:167637 biolink:NamedThing mycofactocin monarch-merged.owl owl:Class CHEBI:24783 biolink:NamedThing imine monarch-merged.owl owl:Class CHEBI:25699 biolink:NamedThing organic ion monarch-merged.owl organic ions chebi_ontology owl:Class CHEBI:25707 biolink:NamedThing organometallic compound monarch-merged.owl owl:Class CHEBI:25713 biolink:NamedThing organosilicon compound monarch-merged.owl owl:Class CHEBI:25750 biolink:NamedThing oxime Compounds of structure R2C=NOH derived from condensation of aldehydes or ketones with hydroxylamine. Oximes from aldehydes may be called aldoximes; those from ketones may be called ketoximes. monarch-merged.owl oximes|oxime 0 CHNOR2 43.02470 43.00581 O\N=C(\[*])[*] chebi_ontology owl:Class CHEBI:32178 biolink:NamedThing Talc monarch-merged.owl Talc owl:Class CHEBI:33245 biolink:NamedThing organic fundamental parent An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system. monarch-merged.owl organic parent hydrides|organic fundamental parents chebi_ontology owl:Class CHEBI:33285 biolink:NamedThing heteroorganic entity A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms. monarch-merged.owl heteroorganic entities|organoelement compounds chebi_ontology owl:Class CHEBI:33415 biolink:NamedThing elemental carbon monarch-merged.owl owl:Class CHEBI:33653 biolink:NamedThing aliphatic compound Any acyclic or cyclic, saturated or unsaturated carbon compound, excluding aromatic compounds. monarch-merged.owl aliphatic compounds chebi_ontology owl:Class CHEBI:33694 biolink:NamedThing biomacromolecule A macromolecule formed by a living organism. monarch-merged.owl Biopolymere|biopolymers|biopolymer|biomacromolecules chebi_ontology owl:Class CHEBI:36606 biolink:NamedThing acid anhydride Compounds consisting of two acyl groups bonded to the same oxygen atom acyl-O-acyl. monarch-merged.owl acid anhydride|anhydride d'acide|acid anhydrides chebi_ontology owl:Class CHEBI:4767 biolink:NamedThing Elastin monarch-merged.owl owl:Class CHEBI:50047 biolink:NamedThing organic amino compound A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups. monarch-merged.owl organic amino compounds chebi_ontology owl:Class CHEBI:64709 biolink:NamedThing organic acid Any organic molecular entity that is acidic and contains carbon in covalent linkage. monarch-merged.owl organic acids chebi_ontology owl:Class CHEBI:64871 biolink:NamedThing (S)-malyl alpha-D-glucosaminide(1-) monarch-merged.owl owl:Class CHEBI:64985 biolink:NamedThing bioconjugate monarch-merged.owl owl:Class CHEBI:6526 biolink:NamedThing Long-chain carboxylate monarch-merged.owl owl:Class CHEBI:67062 biolink:NamedThing lipo-chitin oligosaccharide monarch-merged.owl owl:Class CHEBI:67063 biolink:NamedThing poly-beta-1,6-N-acetyl-D-glucosamine monarch-merged.owl owl:Class CHEBI:68576 biolink:NamedThing dTDP-6-deoxy-beta-L-talose(2-) monarch-merged.owl owl:Class CHEBI:71285 biolink:NamedThing organophosphonate(2-) monarch-merged.owl owl:Class CHEBI:72544 biolink:NamedThing flavonoids monarch-merged.owl owl:Class CHEBI:72588 biolink:NamedThing semisynthetic derivative monarch-merged.owl owl:Class CHEBI:72695 biolink:NamedThing organic molecule Any molecule that consists of at least one carbon atom as part of the electrically neutral entity. monarch-merged.owl organic compound|organic molecules|organic compounds chebi_ontology owl:Class CHEBI:75216 biolink:NamedThing 1-O-octadecyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75241 biolink:NamedThing 1-acyl-2-palmitoleoyl-sn-glycero-3-phosphoserine(1-) monarch-merged.owl owl:Class CHEBI:76535 biolink:NamedThing [beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n monarch-merged.owl owl:Class CHEBI:76539 biolink:NamedThing [beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n (1-) monarch-merged.owl owl:Class CHEBI:77749 biolink:NamedThing 1-palmitoyl-2-(10-hydroperoxy-8E-octadecenoyl)-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:79516 biolink:NamedThing Nonylphenol monarch-merged.owl owl:Class CHEBI:80308 biolink:NamedThing Substance P monarch-merged.owl owl:Class CHEBI:80690 biolink:NamedThing Thyroglobulin triiodothyronine monarch-merged.owl owl:Class CHEBI:81568 biolink:NamedThing Luteinizing hormone monarch-merged.owl ICSH|LH|Interstitial cell stimulating hormone KEGG:C18183|CAS:9002-67-9 chebi_ontology owl:Class CHEBI:81569 biolink:NamedThing Follicle stimulating hormone monarch-merged.owl Follitropin|FSH KEGG:C18184|CAS:9002-68-0 chebi_ontology owl:Class CHEBI:81580 biolink:NamedThing Prolactin monarch-merged.owl PRL KEGG:C18201|CAS:9002-62-4 chebi_ontology owl:Class CHEBI:86401 biolink:NamedThing N-Acetyldemethylphosphinothricinate (2-) monarch-merged.owl owl:Class CHEBI:37963 biolink:NamedThing pyranone monarch-merged.owl owl:Class CHEBI:75885 biolink:NamedThing 2-pyranones monarch-merged.owl owl:Class CHEBI:131912 biolink:NamedThing O-[S-(3-hydroxy-4-methylanthraniloyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:76179 biolink:NamedThing O-(S-acylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:131913 biolink:NamedThing O-[S-(3,5-dihydroxy-4-methylanthraniloyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:132361 biolink:NamedThing O-(S-[2S,4S,6S]-2,4,6-trimethyl-very-long-chain fatty acyl-pantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:132569 biolink:NamedThing O-(S-[2R,4R,6R,8R]-2,4,6,8-tetramethyl-very-long-chain fatty acyl-pantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:133242 biolink:NamedThing O-[S-(medium-chain fatty acyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:133243 biolink:NamedThing O-[S-(long-chain fatty acyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:133300 biolink:NamedThing O-{S-[17-(4-hydroxyphenyl)heptadecanoyl]pantetheine-4'-phosphoryl}serine(1-) residue monarch-merged.owl owl:Class CHEBI:133301 biolink:NamedThing O-{S-[19-(4-hydroxyphenyl)nonadecanoyl]pantetheine-4'-phosphoryl}serine(1-) residue monarch-merged.owl owl:Class CHEBI:133415 biolink:NamedThing O-(S-malonamoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:133417 biolink:NamedThing O-[S-(18-carbamoyl-3,5,7,9,11,13,15,17-octaoxooctadecanoyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:136910 biolink:NamedThing O-[S-(7-oxoheptanoyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:137996 biolink:NamedThing O-[S-(gamma-L-glutamyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:137998 biolink:NamedThing O-{S-[4-(gamma-L-glutamylamino)butanoyl]pantetheine-4'-phosphoryl}serine(1-) residue monarch-merged.owl owl:Class CHEBI:137999 biolink:NamedThing O-[S-4-(gamma-L-glutamylamino)-(2S)-2-hydroxybutanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:138321 biolink:NamedThing O-[S-(4-hydroxybenzoyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:138405 biolink:NamedThing O-(S-(7Z)-tetradecenoylpantetheine-4'-phosphoryl)-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:138407 biolink:NamedThing O-[S-(3R)-hydroxy-(9Z)-hexadecenoylpantetheine-4'-phosphoryl]-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:138611 biolink:NamedThing O-[S-(isoheptanoyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:138623 biolink:NamedThing O-[S-(pyrrole-2-carbonyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:138651 biolink:NamedThing O-(S-fatty acylpantetheine-4'-phosphoryl)-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:140219 biolink:NamedThing O-[S-(4,5-dichloropyrrole-2-carbonyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:140221 biolink:NamedThing O-[S-(5-chloropyrrole-2-carbonyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:140454 biolink:NamedThing O-[S-(5-bromopyrrole-2-carbonyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:140455 biolink:NamedThing O-[S-(4,5-dibromopyrrole-2-carbonyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:140456 biolink:NamedThing O-[S-(3,4,5-tribromopyrrole-2-carbonyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:65264 biolink:NamedThing dodecanoyl-pantetheine-4-phosphorylserine(1-) residue monarch-merged.owl owl:Class CHEBI:78446 biolink:NamedThing O-(S-acetylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78449 biolink:NamedThing O-(S-malonylpantetheine-4'-phosphoryl)serine(2-) residue monarch-merged.owl owl:Class CHEBI:78450 biolink:NamedThing O-(S-acetoacetylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78451 biolink:NamedThing O-[S-(3R)-hydroxybutanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78454 biolink:NamedThing O-(S-butanoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78456 biolink:NamedThing O-(S-3-oxohexanoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78457 biolink:NamedThing O-[S-(3R)-hydroxyhexanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78458 biolink:NamedThing O-[S-(2E)-hexenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78459 biolink:NamedThing O-(S-hexanoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78460 biolink:NamedThing O-(S-3-oxooctanoylpantetheine-4-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78461 biolink:NamedThing O-[S-(3R)-hydroxyoctanoylpantetheine-4-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78463 biolink:NamedThing O-(S-octanoylpantetheine-4-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78464 biolink:NamedThing O-(S-3-oxodecanoylpantetheine-4-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78466 biolink:NamedThing O-[S-(3R)-hydroxydecanoylpantetheine-4-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78468 biolink:NamedThing O-(S-decanoylpantetheine-4-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78469 biolink:NamedThing O-(S-3-oxododecanoylpantetheine-4-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78470 biolink:NamedThing O-[S-(3R)-hydroxydodecanoylpantetheine-4-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78472 biolink:NamedThing O-[S-(2E)-dodecenoylpantetheine-4-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78473 biolink:NamedThing O-(S-3-oxotetradecanoylpantetheine-4-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78474 biolink:NamedThing O-[S-(3R)-hydroxytetradecanoylpantetheine-4-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78475 biolink:NamedThing O-[S-(2E)-tetradecenoylpantetheine-4-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78477 biolink:NamedThing O-(S-tetradecanoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78478 biolink:NamedThing O-(S-3-oxohexadecanoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78480 biolink:NamedThing O-[S-(3R)-hydroxyhexadecanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78481 biolink:NamedThing O-[S-(2E)-hexadecenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78483 biolink:NamedThing O-(S-hexadecanoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78487 biolink:NamedThing O-(S-3-oxooctadecanoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78488 biolink:NamedThing O-[S-(3R)-hydroxyoctadecanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78489 biolink:NamedThing O-[S-(2E)-octadecenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78495 biolink:NamedThing O-(S-octadecanoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78776 biolink:NamedThing O-(S-3-oxoacylpantetheine-4'-phosphoryl)-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:78778 biolink:NamedThing O-[S-(11Z)-hexadecenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78783 biolink:NamedThing O-(S-oleoylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78784 biolink:NamedThing O-[S-(2E)-2-enoylpantetheine-4'-phosphoryl]-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:78785 biolink:NamedThing O-(S-2,3-saturated acylpantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:78798 biolink:NamedThing O-[S-(3Z)-decenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78827 biolink:NamedThing O-[S-(3R)-3-hydroxyacylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78845 biolink:NamedThing O-[S-(methoxycarbonylacetyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78983 biolink:NamedThing O-[S-(3R)-hydroxypentanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78985 biolink:NamedThing O-[S-(3R)-hydroxy-4-methylhexanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78986 biolink:NamedThing O-[S-(3R)-hydroxy-5-methylhexanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78987 biolink:NamedThing O-[S-(3R)-hydroxyheptanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:78988 biolink:NamedThing O-[S-(3R)-hydroxynonanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:82735 biolink:NamedThing O-[S-(6-methoxycarbonylhexanoyl)pantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:82764 biolink:NamedThing O-[S-2-methylbutanoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:83989 biolink:NamedThing O-[S-(9Z)-hexadecenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:85919 biolink:NamedThing O-[S-(4Z)-hexadecenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:86110 biolink:NamedThing O-[S-(6Z)-hexadecenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:86298 biolink:NamedThing O-[S-5-hexenoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:86299 biolink:NamedThing O-[S-5-hexynoylpantetheine-4'-phosphoryl]serine(1-) residue monarch-merged.owl owl:Class CHEBI:86464 biolink:NamedThing O-(S-2-hydroxybenzoylpantetheine-4'-phosphoryl)-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:87131 biolink:NamedThing O-(S-L-2-amino-6-adipoylpantetheine-4'-phosphoryl)-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:90610 biolink:NamedThing O-[S-2,3-dihydroxybenzoylpantetheine-4'-phosphoryl]-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:26455 biolink:NamedThing pyrroles An azole that includes only one N atom and no other heteroatom as a part of the aromatic skeleton. monarch-merged.owl chebi_ontology owl:Class CHEBI:131916 biolink:NamedThing proviolacein monarch-merged.owl owl:Class CHEBI:32079 biolink:NamedThing pyrrolnitrin monarch-merged.owl owl:Class CHEBI:35556 biolink:NamedThing pyrrole monarch-merged.owl owl:Class CHEBI:85785 biolink:NamedThing monodechloroaminopyrrolnitrin monarch-merged.owl owl:Class CHEBI:85786 biolink:NamedThing aminopyrrolnitrin monarch-merged.owl owl:Class CHEBI:17397 biolink:NamedThing 3-methyloxindole monarch-merged.owl owl:Class CHEBI:17920 biolink:NamedThing 3-methyleneoxindole monarch-merged.owl owl:Class CHEBI:28536 biolink:NamedThing 3-hydroxyindolin-2-one monarch-merged.owl owl:Class CHEBI:70726 biolink:NamedThing hesperadin monarch-merged.owl owl:Class CHEBI:134175 biolink:NamedThing N-acylserotonin monarch-merged.owl owl:Class CHEBI:136581 biolink:NamedThing 2-hydroxy-(indol-3-yl)acetic acid monarch-merged.owl owl:Class CHEBI:23781 biolink:NamedThing dihydroxyindole monarch-merged.owl owl:Class CHEBI:50157 biolink:NamedThing (5-hydroxyindol-3-yl)acetaldehyde monarch-merged.owl owl:Class CHEBI:131920 biolink:NamedThing isonocardicin C dizwitterion monarch-merged.owl owl:Class CHEBI:131948 biolink:NamedThing nocardicin C dizwitterion monarch-merged.owl owl:Class CHEBI:132989 biolink:NamedThing O-acetylhomoserine zwitterion monarch-merged.owl owl:Class CHEBI:133608 biolink:NamedThing 1-methylhistidine zwitterion An alpha-amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of 1-methylhistidine; major species at pH 7.3. monarch-merged.owl 2-azaniumyl-3-(1-methyl-1H-imidazol-4-yl)propanoate 0 C7H11N3O2 InChI=1S/C7H11N3O2/c1-10-3-5(9-4-10)2-6(8)7(11)12/h3-4,6H,2,8H2,1H3,(H,11,12) BRMWTNUJHUMWMS-UHFFFAOYSA-N 169.181 169.08513 [O-]C(=O)C([NH3+])CC=1N=CN(C1)C chebi_ontology owl:Class CHEBI:133609 biolink:NamedThing 3-methylhistidine zwitterion An alpha-amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of 3-methylhistidine; major species at pH 7.3. monarch-merged.owl 2-azaniumyl-3-(1-methyl-1H-imidazol-5-yl)propanoate 0 C7H11N3O2 InChI=1S/C7H11N3O2/c1-10-4-9-3-5(10)2-6(8)7(11)12/h3-4,6H,2,8H2,1H3,(H,11,12) JDHILDINMRGULE-UHFFFAOYSA-N 169.181 169.08513 [O-]C(=O)C([NH3+])CC=1N(C=NC1)C chebi_ontology owl:Class CHEBI:140509 biolink:NamedThing 6-chloro-D-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:57563 biolink:NamedThing 2-amino-4-oxopentanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:59869 biolink:NamedThing L-alpha-amino acid zwitterion Zwitterionic form of an L-alpha-amino acid having an anionic carboxy group and a protonated amino group. monarch-merged.owl L-alpha-amino acid zwitterions|an L-alpha-amino acid 0 C2H4NO2R 74.059 74.02420 [NH3+][C@@H]([*])C([O-])=O chebi_ontology owl:Class CHEBI:131921 biolink:NamedThing ethylenediaminetriacetate(2-) monarch-merged.owl owl:Class CHEBI:133748 biolink:NamedThing citrate anion A tricarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of citric acid. monarch-merged.owl citrate|citrate anions chebi_ontology owl:Class CHEBI:36299 biolink:NamedThing tricarboxylic acid monoanion monarch-merged.owl tricarboxylic acid monoanions chebi_ontology owl:Class CHEBI:36300 biolink:NamedThing tricarboxylic acid dianion monarch-merged.owl tricarboxylic acid dianions chebi_ontology owl:Class CHEBI:57472 biolink:NamedThing (N(omega)-L-arginino)succinate(1-) monarch-merged.owl owl:Class CHEBI:57922 biolink:NamedThing coenzyme gamma-F420-2(5-) monarch-merged.owl owl:Class CHEBI:58488 biolink:NamedThing 3-epi-3-hydroxymugineate(2-) monarch-merged.owl owl:Class CHEBI:58505 biolink:NamedThing mugineate(2-) monarch-merged.owl owl:Class CHEBI:58685 biolink:NamedThing 3''-deamino-3''-oxonicotianaminium(1-) monarch-merged.owl owl:Class CHEBI:59541 biolink:NamedThing coenzyme gamma-F420-2(4-) monarch-merged.owl owl:Class CHEBI:77660 biolink:NamedThing pyrroloquinoline quinol(4-) monarch-merged.owl owl:Class CHEBI:77825 biolink:NamedThing luteolin 7-O-[(beta-D-glucosyluronate)-(1->2)-(beta-D-glucosiduronate)] 4'-O-beta-D-glucosiduronate(4-) monarch-merged.owl owl:Class CHEBI:77826 biolink:NamedThing mugineate(1-) monarch-merged.owl owl:Class CHEBI:131927 biolink:NamedThing dicarboxylic acids and O-substituted derivatives A class of carbonyl compound encompassing dicarboxylic acids and any derivatives obtained by substitution of either one or both of the carboxy hydrogens. monarch-merged.owl dicarboxylic acids and derivatives chebi_ontology owl:Class CHEBI:36586 biolink:NamedThing carbonyl compound Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives. monarch-merged.owl carbonyl compounds chebi_ontology owl:Class CHEBI:140675 biolink:NamedThing 3-hydroxyacyl derivative of bacterial toxin monarch-merged.owl owl:Class CHEBI:17087 biolink:NamedThing ketone A compound in which a carbonyl group is bonded to two carbon atoms: R2C=O (neither R may be H). monarch-merged.owl cetone|R-CO-R'|a ketone|Ketone|ketones|Keton 0 COR2 28.010 27.99491 [*]C([*])=O KEGG:C01450|Wikipedia:Ketone CHEBI:24974|CHEBI:6127|CHEBI:13427|CHEBI:13646|CHEBI:8742 chebi_ontology owl:Class CHEBI:33308 biolink:NamedThing carboxylic ester An ester of a carboxylic acid, R(1)C(=O)OR(2), where R(1) = H or organyl and R(2) = organyl. monarch-merged.owl a carboxylic ester|Carboxylic ester|carboxylic acid esters|carboxylic esters 0 CO2R2 44.010 43.98983 [*]C(=O)O[*] KEGG:C02391|Wikipedia:Ester CHEBI:3408|CHEBI:23028|CHEBI:13204 chebi_ontology owl:Class CHEBI:35873 biolink:NamedThing carboxylic anhydride monarch-merged.owl owl:Class CHEBI:51277 biolink:NamedThing thioester A compound of general formula RC(=O)SR'. Compare with thionoester, RC(=S)OR'. monarch-merged.owl thio ester|thioesters|thiol ester 0 COSR2 60.07500 59.96699 [*]C(=O)S[*] chebi_ontology owl:Class CHEBI:52501 biolink:NamedThing 2-hydroxycarbonyl compound monarch-merged.owl owl:Class CHEBI:73693 biolink:NamedThing ketone body A carbonyl compound produced as a water-soluble byproduct when fatty acids are broken down for energy in the liver. There are three endogenous ketone bodies: acetone, acetoacetic acid, and (R)-3-hydroxybutyric acid; others may be produced as a result of the metabolism of synthetic triglycerides. monarch-merged.owl ketone bodies PMID:22524563|Wikipedia:Ketone_body|PMID:22268909|PMID:23466063|PMID:23082721|PMID:10634967|PMID:23557707|PMID:22259088|PMID:22879057|PMID:23148246|PMID:23396451|PMID:19159745 chebi_ontology owl:Class CHEBI:131928 biolink:NamedThing N-hydroxy-2-methylpropanamine monarch-merged.owl owl:Class CHEBI:24709 biolink:NamedThing hydroxylamines monarch-merged.owl owl:Class CHEBI:13792 biolink:NamedThing N-hydroxyarylamine monarch-merged.owl owl:Class CHEBI:15429 biolink:NamedThing hydroxylamine monarch-merged.owl owl:Class CHEBI:50760 biolink:NamedThing N-hydroxy-alpha-amino-acid monarch-merged.owl owl:Class CHEBI:59991 biolink:NamedThing 4-(hydroxylamino)-N,N-dimethylaniline monarch-merged.owl owl:Class CHEBI:61129 biolink:NamedThing N-hydroxy-L-isoleucine monarch-merged.owl owl:Class CHEBI:61138 biolink:NamedThing N-hydroxy-L-valine monarch-merged.owl owl:Class CHEBI:79095 biolink:NamedThing N(5)-hydroxy-L-ornithine monarch-merged.owl owl:Class CHEBI:90888 biolink:NamedThing aurachin C monarch-merged.owl owl:Class CHEBI:13193 biolink:NamedThing hydrogen acceptor A molecular entity that can undergo reduction by the gain of hydrogen atom(s). monarch-merged.owl A R * chebi_ontology owl:Class CHEBI:17654 biolink:NamedThing electron acceptor A substance to which an electron may be transferred. monarch-merged.owl Elektronenakzeptor|Oxidized donor|electron acceptor KEGG:C02177 CHEBI:14207|CHEBI:14716|CHEBI:7835 chebi_ontology owl:Class CHEBI:131941 biolink:NamedThing validoxylamine A monarch-merged.owl owl:Class CHEBI:16181 biolink:NamedThing 1-amino-1-deoxy-scyllo-inositol monarch-merged.owl owl:Class CHEBI:27405 biolink:NamedThing streptidine monarch-merged.owl owl:Class CHEBI:27955 biolink:NamedThing streptamine monarch-merged.owl owl:Class CHEBI:28295 biolink:NamedThing 2-deoxystreptamine monarch-merged.owl owl:Class CHEBI:30449 biolink:NamedThing validamine monarch-merged.owl owl:Class CHEBI:65046 biolink:NamedThing 2-deoxy-scyllo-inosamine monarch-merged.owl owl:Class CHEBI:50995 biolink:NamedThing secondary amino compound A compound formally derived from ammonia by replacing two hydrogen atoms by organyl groups. monarch-merged.owl secondary amino compounds chebi_ontology owl:Class CHEBI:137310 biolink:NamedThing 3-(methylaminomethyl)indole monarch-merged.owl owl:Class CHEBI:139324 biolink:NamedThing coelenterazine dioxetanone monarch-merged.owl owl:Class CHEBI:139505 biolink:NamedThing baeocystin monarch-merged.owl owl:Class CHEBI:15805 biolink:NamedThing D-octopine monarch-merged.owl owl:Class CHEBI:17249 biolink:NamedThing D-nopaline monarch-merged.owl owl:Class CHEBI:28220 biolink:NamedThing 2,6-dihydroxypseudooxynicotine monarch-merged.owl owl:Class CHEBI:29703 biolink:NamedThing validamycin A monarch-merged.owl owl:Class CHEBI:32863 biolink:NamedThing secondary amine A compound formally derived from ammonia by replacing two hydrogen atoms by hydrocarbyl groups. monarch-merged.owl secondary amines|sekundaeres Amin|R2NH|Secondary amine owl:Class CHEBI:37754 biolink:NamedThing 6-hydroxypseudooxynicotine monarch-merged.owl owl:Class CHEBI:43966 biolink:NamedThing melagatran monarch-merged.owl owl:Class CHEBI:47781 biolink:NamedThing desipramine monarch-merged.owl owl:Class CHEBI:6121 biolink:NamedThing ketamine A member of the class of cyclohexanones in which one of the hydrogens at position 2 is substituted by a 2-chlorophenyl group, while the other is substituted by a methylamino group. monarch-merged.owl special K|(+-)-ketamine|Ketamine|2-(methylamino)-2-(2-chlorophenyl)cyclohexanone|2-(o-chlorophenyl)-2-(methylamino)-cyclohexanone|DL-ketamine|2-(2-chlorophenyl)-2-(methylamino)cyclohexanone|NMDA|ketamina|ketamine|KETAMINE|ketaminum|dl-ketamine|2-(2-Chloro-phenyl)-2-methylamino-cyclohexanone owl:Class CHEBI:64429 biolink:NamedThing chanoclavine-I aldehyde monarch-merged.owl owl:Class CHEBI:70723 biolink:NamedThing reversine monarch-merged.owl owl:Class CHEBI:71189 biolink:NamedThing iminodiacetonitrile monarch-merged.owl owl:Class CHEBI:80667 biolink:NamedThing 4'-O-methylnorbelladine monarch-merged.owl owl:Class CHEBI:81024 biolink:NamedThing nocardicin G monarch-merged.owl owl:Class CHEBI:90868 biolink:NamedThing validamycin B monarch-merged.owl owl:Class CHEBI:131943 biolink:NamedThing (5E)-tetradecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77331 biolink:NamedThing monounsaturated fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:131962 biolink:NamedThing (3E)-octenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138404 biolink:NamedThing (E)-hex-4-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:139559 biolink:NamedThing (9Z,12R)-12-hydroxyoctadec-9-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:139567 biolink:NamedThing octadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:139572 biolink:NamedThing hexadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57322 biolink:NamedThing trans-tetradec-11-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57323 biolink:NamedThing cis-tetradec-11-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57330 biolink:NamedThing trans-dodec-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:58543 biolink:NamedThing cis-dodec-3-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:61405 biolink:NamedThing trans-tetradec-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:61968 biolink:NamedThing cis-tetradec-3-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:65060 biolink:NamedThing (9Z)-myristoleoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74068 biolink:NamedThing erucoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74069 biolink:NamedThing (11Z)-eicosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74146 biolink:NamedThing C24:1-CoA(4-) monarch-merged.owl owl:Class CHEBI:74161 biolink:NamedThing C26:1-CoA(4-) monarch-merged.owl owl:Class CHEBI:74281 biolink:NamedThing trans-2-hexacosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74308 biolink:NamedThing (9Z)-heptadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74310 biolink:NamedThing (9Z)-pentadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76563 biolink:NamedThing (13Z)-icosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77310 biolink:NamedThing (E)-2-methylpentadec-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77545 biolink:NamedThing trans-2-pentadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77548 biolink:NamedThing trans-2-undecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77551 biolink:NamedThing trans-2-heptadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:79021 biolink:NamedThing (11Z)-3-oxohexadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84650 biolink:NamedThing (5Z)-tetradecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85268 biolink:NamedThing (5Z)-icosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85415 biolink:NamedThing (Z)-hex-3-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85640 biolink:NamedThing cis-3-octenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85655 biolink:NamedThing (3E)-nonenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86044 biolink:NamedThing 18-hydroxyoleoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87120 biolink:NamedThing 4-methylpent-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87687 biolink:NamedThing (3S)-3-hydroxyoleoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87695 biolink:NamedThing 3-oxooleoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87705 biolink:NamedThing (3S,5Z)-3-hydroxytetradec-5-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87707 biolink:NamedThing (5Z)-3-oxotetradecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87710 biolink:NamedThing (3E)-tetradecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87718 biolink:NamedThing (3S,7Z)-3-hydroxyhexadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87719 biolink:NamedThing (7Z)-3-oxohexadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:90119 biolink:NamedThing (2E)-tricosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:90157 biolink:NamedThing 2-methylhexenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:131944 biolink:NamedThing (2E,5E)-tetradecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136107 biolink:NamedThing 8,9-epoxy-(5Z,11Z,14Z)-icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136115 biolink:NamedThing 11,12-epoxy-(5Z,8Z,14Z)-icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136117 biolink:NamedThing 14,15-epoxy-(5Z,8Z,11Z)-icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136351 biolink:NamedThing 5,6-epoxy-(8Z,11Z,14Z)-icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136407 biolink:NamedThing 5-hydroxy-(6E,8Z,11Z,14Z)-icosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136408 biolink:NamedThing 12-hydroxy-(5Z,8Z,10E,14Z)-icosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136409 biolink:NamedThing 15-hydroxy-(5Z,8Z,11Z,13E)-icosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136757 biolink:NamedThing long-chain (3S)-hydroxy fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136758 biolink:NamedThing long-chain 3-oxo-fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138654 biolink:NamedThing (R)-2-hydroxyhexadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:139563 biolink:NamedThing octadecatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:139565 biolink:NamedThing octadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57379 biolink:NamedThing palmitoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57380 biolink:NamedThing icosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57385 biolink:NamedThing myristoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57394 biolink:NamedThing stearoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62543 biolink:NamedThing 3-oxotetradecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:65059 biolink:NamedThing docosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:70827 biolink:NamedThing isopentadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71427 biolink:NamedThing isotridecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71435 biolink:NamedThing 3-hydroxyisopentadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71446 biolink:NamedThing 3-hydroxyisoheptadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71455 biolink:NamedThing 3-hydroxyicosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71461 biolink:NamedThing isoheptadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71489 biolink:NamedThing (6Z,9Z,12Z,15Z)-octadecatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71586 biolink:NamedThing (3E,5Z)-tetradecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73852 biolink:NamedThing (7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73856 biolink:NamedThing (7Z,10Z,13Z,16Z)-docosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73862 biolink:NamedThing (5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73863 biolink:NamedThing (7Z,10Z,13Z,16Z,19Z)-3-oxodocosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73870 biolink:NamedThing (7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74054 biolink:NamedThing (11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74115 biolink:NamedThing 2-hydroxypalmitoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74116 biolink:NamedThing 2-hydroxystearoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74264 biolink:NamedThing (8Z,11Z,14Z)-icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74265 biolink:NamedThing (8Z,11Z,14Z,17Z)-icosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74298 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74307 biolink:NamedThing heptadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74309 biolink:NamedThing pentadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74328 biolink:NamedThing (11Z,14Z,17Z)-icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74329 biolink:NamedThing (13Z,16Z,19Z)-3-oxodocosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74334 biolink:NamedThing (10Z,13Z,16Z,19Z)-3-oxodocosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74424 biolink:NamedThing (10Z,13Z,16Z,19Z)-docosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74426 biolink:NamedThing (10Z,13Z,16Z)-3-oxodocosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74691 biolink:NamedThing trans-2-icosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74692 biolink:NamedThing trans-2-docosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:75105 biolink:NamedThing nonadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76368 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76387 biolink:NamedThing (3R,11Z)-3-hydroxyicosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76388 biolink:NamedThing (2E,11Z)-icosadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76391 biolink:NamedThing (2E,13Z)-docosadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76408 biolink:NamedThing (3R,11Z,14Z)-3-hydroxyicosadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76409 biolink:NamedThing (2E,11Z,14Z)-icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76410 biolink:NamedThing (11Z,14Z)-icosadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76411 biolink:NamedThing (3R,8Z,11Z,14Z)-3-hydroxyicosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76412 biolink:NamedThing (2E,8Z,11Z,14Z)-icosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76415 biolink:NamedThing (3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76416 biolink:NamedThing (2E,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76455 biolink:NamedThing (3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76456 biolink:NamedThing (2E,11Z,14Z,17Z)-icosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76457 biolink:NamedThing (3R,8Z,11Z,14Z,17Z)-3-hydroxyicosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76458 biolink:NamedThing (2E,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76460 biolink:NamedThing (3R,7Z,10Z,13Z,16Z,19Z)-3-hydroxydocosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76461 biolink:NamedThing (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76552 biolink:NamedThing (9Z,12Z)-hexadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76555 biolink:NamedThing (11Z)-3-oxooctadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76557 biolink:NamedThing (3R,11Z)-3-hydroxyoctadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76559 biolink:NamedThing (13Z)-3-oxoicosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76561 biolink:NamedThing (3R,13Z)-3-hydroxyicosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76562 biolink:NamedThing (2E,13Z)-icosadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77549 biolink:NamedThing (2E,9Z)-hexadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78663 biolink:NamedThing (5Z,11Z,14Z)-icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78664 biolink:NamedThing (5Z,11Z,14Z,17Z)-icosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78670 biolink:NamedThing (8Z,11Z)-icosadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78680 biolink:NamedThing (9Z,12Z)-tetradecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78684 biolink:NamedThing (9Z,12Z)-pentadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78690 biolink:NamedThing (9Z,12Z)-heptadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84181 biolink:NamedThing 12-methyloctadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84182 biolink:NamedThing 2-methylhexadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84195 biolink:NamedThing isomyristoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84198 biolink:NamedThing 3-hydroxytetradecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84202 biolink:NamedThing 12-hydroxyoctadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84205 biolink:NamedThing 15-hydroxypentadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84207 biolink:NamedThing 16-hydroxyhexadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84791 biolink:NamedThing (3E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84904 biolink:NamedThing (9Z,12Z)-18-hydroxyoctadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85090 biolink:NamedThing (3E,5Z,8Z,11Z,14Z)-icosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85091 biolink:NamedThing (2E,4E,8Z,11Z,14Z)-icosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85914 biolink:NamedThing (9Z,12Z)-hexadeca-9,12,15-trienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86042 biolink:NamedThing 2-methyl-3-oxopalmitoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86122 biolink:NamedThing (10E,12Z)-hexadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86520 biolink:NamedThing (2R)-2-methyltetradecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86521 biolink:NamedThing (2S)-2-methyltetradecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87701 biolink:NamedThing (2E,5Z)-tetradecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87712 biolink:NamedThing (2E,4E)-tetradecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87717 biolink:NamedThing (2E,7Z)-hexadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77330 biolink:NamedThing polyunsaturated fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:131990 biolink:NamedThing (2E,5Z)-octadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:137593 biolink:NamedThing (2E,4Z)-deca-2,4-dienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138558 biolink:NamedThing (3E,5Z)-dodecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:176587 biolink:NamedThing oxidized eicosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:176588 biolink:NamedThing oxidized icosatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57368 biolink:NamedThing arachidonoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74083 biolink:NamedThing (9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74084 biolink:NamedThing (6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74086 biolink:NamedThing (6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74087 biolink:NamedThing (9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74229 biolink:NamedThing (11Z,14Z,17Z,20Z,23Z)-hexacosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74233 biolink:NamedThing (13Z,16Z,19Z,22Z,25Z)-octacosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74247 biolink:NamedThing (15Z,18Z,21Z,24Z,27Z)-triacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74259 biolink:NamedThing (17Z,20Z,23Z,26Z,29Z)-dotriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74260 biolink:NamedThing (19Z,22Z,25Z,28Z,31Z)-tetratriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74262 biolink:NamedThing (21Z,24Z,27Z,30Z,33Z)-hexatriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74282 biolink:NamedThing (11Z,14Z,17Z,20Z)-hexacosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74285 biolink:NamedThing (13Z,16Z,19Z,22Z)-octacosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74287 biolink:NamedThing (15Z,18Z,21Z,24Z)-triacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74289 biolink:NamedThing (17Z,20Z,23Z,26Z)-dotriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74291 biolink:NamedThing (19Z,22Z,25Z,28Z)-tetratriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74293 biolink:NamedThing (21Z,24Z,27Z,30Z)-hexatriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74306 biolink:NamedThing (8Z,11Z,14Z,17Z,20Z,23Z)-hexacosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74312 biolink:NamedThing (10Z,13Z,16Z,19Z,22Z,25Z)-octacosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74315 biolink:NamedThing (12Z,15Z,18Z,21Z,24Z,27Z)-triacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74317 biolink:NamedThing (14Z,17Z,20Z,23Z,26Z,29Z)-dotriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74319 biolink:NamedThing (16Z,19Z,22Z,25Z,28Z,31Z)-tetratriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76442 biolink:NamedThing (23Z,26Z,29Z,32Z)-octatriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76484 biolink:NamedThing (23Z,26Z,29Z,32Z,35Z)-octatriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76515 biolink:NamedThing (18Z,21Z,24Z,27Z,30Z,33Z)-hexatriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:36949 biolink:NamedThing hydroxyalkyl phosphate monarch-merged.owl owl:Class CHEBI:18025 biolink:NamedThing 2-hydroxypropyl dihydrogen phosphate monarch-merged.owl owl:Class CHEBI:49253 biolink:NamedThing (9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoic acid monarch-merged.owl owl:Class CHEBI:50605 biolink:NamedThing 2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl phosphate monarch-merged.owl owl:Class CHEBI:131950 biolink:NamedThing 2-aminobenzoylacetic acid monarch-merged.owl owl:Class CHEBI:47881 biolink:NamedThing 3-oxo monocarboxylic acid monarch-merged.owl owl:Class CHEBI:17844 biolink:NamedThing 2-amino-3-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:27681 biolink:NamedThing (S)-2-acetyl-2-hydroxybutanoic acid monarch-merged.owl owl:Class CHEBI:27713 biolink:NamedThing (5S)-5-amino-3-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:28422 biolink:NamedThing 3-oxohexanoic acid monarch-merged.owl owl:Class CHEBI:28759 biolink:NamedThing 3-oxo-3-phenylpropionic acid monarch-merged.owl owl:Class CHEBI:37079 biolink:NamedThing 2-methylacetoacetic acid monarch-merged.owl owl:Class CHEBI:37107 biolink:NamedThing 7-methyl-3-oxooctanoic acid monarch-merged.owl owl:Class CHEBI:49049 biolink:NamedThing 3-oxo-3-ureidopropanoic acid monarch-merged.owl owl:Class CHEBI:52351 biolink:NamedThing 3-oxodocosanoic acid monarch-merged.owl owl:Class CHEBI:52352 biolink:NamedThing 3-oxotetracosanoic acid monarch-merged.owl owl:Class CHEBI:48975 biolink:NamedThing substituted aniline monarch-merged.owl substituted anilines chebi_ontology owl:Class CHEBI:133039 biolink:NamedThing 1-(2-aminophenyl)decane-1,3-dione monarch-merged.owl owl:Class CHEBI:15783 biolink:NamedThing N,N-dimethyl-1,4-phenylenediamine monarch-merged.owl owl:Class CHEBI:23130 biolink:NamedThing chloroaniline monarch-merged.owl owl:Class CHEBI:25275 biolink:NamedThing methylaniline monarch-merged.owl owl:Class CHEBI:25550 biolink:NamedThing nitroaniline monarch-merged.owl owl:Class CHEBI:28683 biolink:NamedThing kynurenine monarch-merged.owl owl:Class CHEBI:45373 biolink:NamedThing sulfanilamide monarch-merged.owl owl:Class CHEBI:78237 biolink:NamedThing 3-amino-4-hydroxybenzaldehyde monarch-merged.owl owl:Class CHEBI:86497 biolink:NamedThing hydroxykynurenine monarch-merged.owl owl:Class CHEBI:9337 biolink:NamedThing sulfathiazole monarch-merged.owl owl:Class CHEBI:131951 biolink:NamedThing 4-methylpentanoyl-CoA monarch-merged.owl owl:Class CHEBI:25271 biolink:NamedThing methyl-branched fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:137545 biolink:NamedThing pivaloyl-CoA monarch-merged.owl owl:Class CHEBI:15450 biolink:NamedThing (2R)-2-methylacyl-CoA monarch-merged.owl owl:Class CHEBI:15451 biolink:NamedThing (2S)-2-methylacyl-CoA monarch-merged.owl owl:Class CHEBI:15477 biolink:NamedThing 2-methylbutanoyl-CoA monarch-merged.owl owl:Class CHEBI:15479 biolink:NamedThing isobutyryl-CoA monarch-merged.owl owl:Class CHEBI:18100 biolink:NamedThing multi-methyl-branched fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:25286 biolink:NamedThing methylbutanoyl-CoA monarch-merged.owl owl:Class CHEBI:70848 biolink:NamedThing isopentadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:71439 biolink:NamedThing 3-oxoisopentadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:71453 biolink:NamedThing 3-oxoisoheptadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:71540 biolink:NamedThing isoheptadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:71544 biolink:NamedThing (E)-isopentadec-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:84992 biolink:NamedThing 3-methylpalmitoyl-CoA monarch-merged.owl owl:Class CHEBI:85073 biolink:NamedThing 12-methyloctadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:85074 biolink:NamedThing 2-methylhexadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:85077 biolink:NamedThing isomyristoyl-CoA monarch-merged.owl owl:Class CHEBI:86317 biolink:NamedThing 2-methyl-3-oxopalmitoyl-CoA monarch-merged.owl owl:Class CHEBI:87433 biolink:NamedThing (R)-2-hydroxy-4-methylpentanoyl-CoA monarch-merged.owl owl:Class CHEBI:61905 biolink:NamedThing short-chain fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:138964 biolink:NamedThing 2-hydroxyisovaleryl-CoA monarch-merged.owl owl:Class CHEBI:139303 biolink:NamedThing 2-hydroxybutanoyl-CoA monarch-merged.owl owl:Class CHEBI:15536 biolink:NamedThing pentanoyl-CoA monarch-merged.owl owl:Class CHEBI:22954 biolink:NamedThing butanoyl-CoAs monarch-merged.owl owl:Class CHEBI:26296 biolink:NamedThing propanoyl-CoAs monarch-merged.owl owl:Class CHEBI:131954 biolink:NamedThing GDP-4-amino-3,4,6-trideoxy-alpha-D-threo-hex-3-enopyranose monarch-merged.owl owl:Class CHEBI:21167 biolink:NamedThing GDP-hexose monarch-merged.owl owl:Class CHEBI:140531 biolink:NamedThing GDP-6-deoxy-alpha-D-altrose monarch-merged.owl owl:Class CHEBI:16097 biolink:NamedThing GDP-6-deoxy-alpha-D-talose monarch-merged.owl owl:Class CHEBI:21168 biolink:NamedThing GDP-mannose monarch-merged.owl owl:Class CHEBI:29062 biolink:NamedThing GDP-glucose monarch-merged.owl owl:Class CHEBI:35245 biolink:NamedThing GDP-galactose monarch-merged.owl owl:Class CHEBI:64608 biolink:NamedThing GDP-fucose monarch-merged.owl owl:Class CHEBI:74045 biolink:NamedThing GDP-4-amino-4,6-dideoxy-alpha-D-mannose monarch-merged.owl owl:Class CHEBI:74047 biolink:NamedThing GDP-N-acetyl-alpha-D-perosamine monarch-merged.owl owl:Class CHEBI:86287 biolink:NamedThing GDP-N,N'-diacetylbacillosamine monarch-merged.owl owl:Class CHEBI:33184 biolink:NamedThing long-chain fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:132258 biolink:NamedThing (2E,5E)-tetradecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:137039 biolink:NamedThing 8,9-epoxy-(5Z,11Z,14Z)-icosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:137047 biolink:NamedThing 11,12-epoxy-(5Z,8Z,14Z)-icosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:137050 biolink:NamedThing 14,15-epoxy-(5Z,8Z,11Z)-icosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:137107 biolink:NamedThing 5,6-epoxy-(8Z,11Z,14Z)-icosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:137111 biolink:NamedThing 5-hydroxy-(6E,8Z,11Z,14Z)-icosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:137112 biolink:NamedThing 12-hydroxy-(5Z,8Z,10E,14Z)-icosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:137145 biolink:NamedThing 15-hydroxy-(5Z,8Z,11Z,13E)-icosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:137599 biolink:NamedThing long-chain 3-oxo-fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:139022 biolink:NamedThing 2-hydroxyheptadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:139023 biolink:NamedThing 2-hydroxyicosanoyl-CoA monarch-merged.owl owl:Class CHEBI:139025 biolink:NamedThing 2-hydroxytetradecanoyl-CoA monarch-merged.owl owl:Class CHEBI:139576 biolink:NamedThing octadecatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:139578 biolink:NamedThing octadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:140153 biolink:NamedThing (9Z,12R)-12-hydroxyoctadec-9-enoyl-CoA monarch-merged.owl owl:Class CHEBI:15371 biolink:NamedThing 3-oxopristanoyl-CoA monarch-merged.owl owl:Class CHEBI:15475 biolink:NamedThing 2-hydroxyphytanoyl-CoA monarch-merged.owl owl:Class CHEBI:15495 biolink:NamedThing 4,8,12-trimethyltridecanoyl-CoA monarch-merged.owl owl:Class CHEBI:15525 biolink:NamedThing palmitoyl-CoA monarch-merged.owl owl:Class CHEBI:15527 biolink:NamedThing icosanoyl-CoA monarch-merged.owl owl:Class CHEBI:15532 biolink:NamedThing myristoyl-CoA monarch-merged.owl owl:Class CHEBI:15541 biolink:NamedThing stearoyl-CoA monarch-merged.owl owl:Class CHEBI:27979 biolink:NamedThing all-cis-icosa-8,11,14-trienoyl-CoA monarch-merged.owl owl:Class CHEBI:44089 biolink:NamedThing (2S)-2-methyltetradecanoyl-CoA monarch-merged.owl owl:Class CHEBI:51341 biolink:NamedThing pristanoyl-CoA monarch-merged.owl owl:Class CHEBI:63539 biolink:NamedThing (5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:63541 biolink:NamedThing (7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:63542 biolink:NamedThing (8Z,11Z,14Z,17Z)-icosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:63544 biolink:NamedThing (7Z,10Z,13Z,16Z)-docosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:63545 biolink:NamedThing (6Z,9Z,12Z,15Z)-octadecatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:63821 biolink:NamedThing (7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:65131 biolink:NamedThing (6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:65132 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:71539 biolink:NamedThing (8Z,11Z,14Z)-3-oxoicosa-8,11,14-trienoyl-CoA monarch-merged.owl owl:Class CHEBI:71574 biolink:NamedThing (8Z,11Z,14Z,17Z)-3-oxoicosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:72001 biolink:NamedThing (3E,5Z)-tetradecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:73874 biolink:NamedThing (9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:73876 biolink:NamedThing (9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:73887 biolink:NamedThing (7Z,10Z,13Z,16Z,19Z)-3-oxodocosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74109 biolink:NamedThing (11Z,14Z)-3-oxoicosa-11,14-dienoyl-CoA monarch-merged.owl owl:Class CHEBI:74114 biolink:NamedThing (11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:74137 biolink:NamedThing 2-hydroxyhexadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:74138 biolink:NamedThing 2-hydroxystearoyl-CoA monarch-merged.owl owl:Class CHEBI:74148 biolink:NamedThing 2-hydroxybehenoyl-CoA monarch-merged.owl owl:Class CHEBI:74397 biolink:NamedThing heptadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:74574 biolink:NamedThing pentadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:74606 biolink:NamedThing (11Z,14Z,17Z)-icosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:74608 biolink:NamedThing (13Z,16Z,19Z)-3-oxodocosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:74609 biolink:NamedThing (10Z,13Z,16Z,19Z)-3-oxodocosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74662 biolink:NamedThing (10Z,13Z,16Z,19Z)-docosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:75332 biolink:NamedThing nonadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:76450 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76509 biolink:NamedThing (2E,11Z)-icosadienoyl-CoA monarch-merged.owl owl:Class CHEBI:76520 biolink:NamedThing (2E,13Z)-docosadienoyl-CoA monarch-merged.owl owl:Class CHEBI:76532 biolink:NamedThing (2E,11Z,14Z)-icosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:76534 biolink:NamedThing (11Z,14Z)-icosadienoyl-CoA monarch-merged.owl owl:Class CHEBI:76538 biolink:NamedThing (2E,8Z,11Z,14Z)-icosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76542 biolink:NamedThing (2E,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76638 biolink:NamedThing (2E,11Z,14Z,17Z)-icosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76641 biolink:NamedThing (2E,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76643 biolink:NamedThing (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76889 biolink:NamedThing (9Z,12Z)-hexadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:76900 biolink:NamedThing (3R,11Z)-3-hydroxyoctadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:76908 biolink:NamedThing (3R,13Z)-3-hydroxyicosenoyl-CoA monarch-merged.owl owl:Class CHEBI:77557 biolink:NamedThing (2S)-2-methylpentadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:78194 biolink:NamedThing (2E,4Z,7Z,10Z,13Z,16Z,19Z)-docosaheptaenoyl-coenzyme A monarch-merged.owl owl:Class CHEBI:82740 biolink:NamedThing (5Z,11Z,14Z)-icosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:82741 biolink:NamedThing (5Z,11Z,14Z,17Z)-icosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:82742 biolink:NamedThing (8Z,11Z)-icosadienoyl-CoA monarch-merged.owl owl:Class CHEBI:82745 biolink:NamedThing (9Z,12Z)-tetradecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:82746 biolink:NamedThing (9Z,12Z)-pentadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:82747 biolink:NamedThing (9Z,12Z)-heptadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:85209 biolink:NamedThing 12-hydroxyoctadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:85211 biolink:NamedThing 15-hydroxypentadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:85213 biolink:NamedThing 16-hydroxyhexadecanoyl-CoA monarch-merged.owl owl:Class CHEBI:85443 biolink:NamedThing (3E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:85508 biolink:NamedThing (9Z,12Z)-18-hydroxyoctadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:85524 biolink:NamedThing (3E,5Z,8Z,11Z,14Z)-icosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:85554 biolink:NamedThing (2E,4E,8Z,11Z,14Z)-icosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:86132 biolink:NamedThing (9Z,12Z)-hexadeca-9,12,15-trienoyl-CoA monarch-merged.owl owl:Class CHEBI:86376 biolink:NamedThing (10E,12Z)-hexadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:87173 biolink:NamedThing (2R)-2-methyltetradecanoyl-CoA monarch-merged.owl owl:Class CHEBI:88067 biolink:NamedThing (2E,5Z)-tetradecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:88072 biolink:NamedThing (3S,5Z)-3-hydroxytetradec-5-enoyl-CoA monarch-merged.owl owl:Class CHEBI:88084 biolink:NamedThing (2E,4E)-tetradecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:88086 biolink:NamedThing (2E,7Z)-hexadecadienoyl-CoA monarch-merged.owl owl:Class CHEBI:85348 biolink:NamedThing 11,12-saturated fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:27402 biolink:NamedThing (S)-3-hydroxypalmitoyl-CoA monarch-merged.owl owl:Class CHEBI:27721 biolink:NamedThing trans-tetradec-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:52328 biolink:NamedThing 3-oxodocosanoyl-CoA monarch-merged.owl owl:Class CHEBI:52381 biolink:NamedThing hexadec-2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:53152 biolink:NamedThing palmitoleoyl-CoA monarch-merged.owl owl:Class CHEBI:62014 biolink:NamedThing cis-tetradec-3-enoyl-CoA monarch-merged.owl owl:Class CHEBI:74489 biolink:NamedThing (13Z,16Z,19Z,22Z)-octacosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74610 biolink:NamedThing (6Z)-hexadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:75360 biolink:NamedThing (6Z)-octadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:84584 biolink:NamedThing 3-oxodotriacontanoyl-CoA monarch-merged.owl owl:Class CHEBI:131957 biolink:NamedThing (5E)-tetradecenoyl-L-carnitine monarch-merged.owl owl:Class CHEBI:85449 biolink:NamedThing O-tetradecenoyl-L-carnitine monarch-merged.owl owl:Class CHEBI:84647 biolink:NamedThing O-[(9Z)-tetradecenoyl]-L-carnitine monarch-merged.owl owl:Class CHEBI:84649 biolink:NamedThing O-[(5Z)-tetradecenoyl]-L-carnitine monarch-merged.owl owl:Class CHEBI:131959 biolink:NamedThing phosphinomethylisomalic acid monarch-merged.owl owl:Class CHEBI:26044 biolink:NamedThing phosphinic acids monarch-merged.owl owl:Class CHEBI:142851 biolink:NamedThing 2-amino-4-[hydroxy(methyl)phosphoryl]butanoic acid monarch-merged.owl owl:Class CHEBI:18007 biolink:NamedThing 3-[hydroxy(oxido)phosphoranyl]pyruvic acid monarch-merged.owl owl:Class CHEBI:29031 biolink:NamedThing phosphinic acid monarch-merged.owl owl:Class CHEBI:81403 biolink:NamedThing 2-phosphinomethylmalic acid monarch-merged.owl owl:Class CHEBI:15583 biolink:NamedThing (R)-2-ethylmalic acid monarch-merged.owl owl:Class CHEBI:15584 biolink:NamedThing citramalic acid monarch-merged.owl owl:Class CHEBI:15587 biolink:NamedThing (R)-3,3-dimethylmalic acid monarch-merged.owl owl:Class CHEBI:15590 biolink:NamedThing 2,3-dimethylmalic acid monarch-merged.owl owl:Class CHEBI:15591 biolink:NamedThing 3-ethylmalic acid monarch-merged.owl owl:Class CHEBI:16369 biolink:NamedThing 5-dehydro-4-deoxy-D-glucaric acid monarch-merged.owl owl:Class CHEBI:17023 biolink:NamedThing 2-hydroxyadipic acid monarch-merged.owl owl:Class CHEBI:17084 biolink:NamedThing 2-hydroxyglutaric acid A 2-hydroxydicarboxylic acid that is glutaric acid in which one hydrogen alpha- to a carboxylic acid group is substituted by a hydroxy group. monarch-merged.owl 2-hydroxypentanedioic acid|alpha-hydroxyglutaric acid|2-hydroxyglutaric acid 0 C5H8O5 InChI=1S/C5H8O5/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10) HWXBTNAVRSUOJR-UHFFFAOYSA-N 148.11402 148.03717 OC(CCC(O)=O)C(O)=O Beilstein:1723805|CAS:2889-31-8|MetaCyc:2-HYDROXYGLUTARIC_ACID|PMID:17439666|Reaxys:1723805|Wikipedia:Alpha-Hydroxyglutaric_acid|KEGG:C02630 CHEBI:1160 chebi_ontology owl:Class CHEBI:35114 biolink:NamedThing 3-isopropylmalic acid monarch-merged.owl owl:Class CHEBI:4593 biolink:NamedThing dihydroxyfumaric acid monarch-merged.owl owl:Class CHEBI:53146 biolink:NamedThing (2Z,4E)-2-hydroxymuconic acid monarch-merged.owl owl:Class CHEBI:64037 biolink:NamedThing (2E,4Z)-2-hydroxymuconic acid monarch-merged.owl owl:Class CHEBI:6650 biolink:NamedThing malic acid monarch-merged.owl owl:Class CHEBI:84790 biolink:NamedThing trans-3-hexenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84793 biolink:NamedThing trans-dec-3-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85110 biolink:NamedThing (3E,5Z)-dienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85493 biolink:NamedThing 4-saturated-trans-3-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:131964 biolink:NamedThing (14S,15R)-EET(1-) monarch-merged.owl owl:Class CHEBI:131965 biolink:NamedThing (14R,15S)-EET(1-) monarch-merged.owl owl:Class CHEBI:131966 biolink:NamedThing (2Z,4S,5R)-2-amino-4,5,6-trihydroxyhex-2-enoic acid monarch-merged.owl owl:Class CHEBI:33704 biolink:NamedThing alpha-amino acid An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group. monarch-merged.owl alpha-amino carboxylic acids|alpha-amino acids|Amino acids|Amino acid|alpha-amino acid 0 C2H4NO2R 74.05870 74.02420 NC([*])C(O)=O KEGG:C00045|KEGG:C05167 CHEBI:13779|CHEBI:22442|CHEBI:2642|CHEBI:10208 chebi_ontology owl:Class CHEBI:15356 biolink:NamedThing cysteine A sulfur-containing amino acid that is propanoic acid with an amino group at position 2 and a sulfanyl group at position 3. monarch-merged.owl cysteine|C|Hcys|cisteina|2-amino-3-mercaptopropanoic acid|Cystein|Zystein|2-Amino-3-mercaptopropionic acid|Cys|2-amino-3-sulfanylpropanoic acid|Cysteine 0 C3H7NO2S InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6) XUJNEKJLAYXESH-UHFFFAOYSA-N 121.15922 121.01975 NC(CS)C(O)=O KEGG:C00736|Wikipedia:Cysteine|PMID:17439666|Reaxys:1721406|KNApSAcK:C00007323|KNApSAcK:C00001351|PMID:25181601|Gmelin:2933|Beilstein:1721406|CAS:3374-22-9 CHEBI:14061|CHEBI:4050|CHEBI:23508 chebi_ontology owl:Class CHEBI:15428 biolink:NamedThing glycine The simplest (and the only achiral) proteinogenic amino acid, with a hydrogen atom as its side chain. monarch-merged.owl G|Glyzin|Glycocoll|aminoacetic acid|Glycine|Hgly|Glycin|aminoethanoic acid|Glykokoll|H2N-CH2-COOH|GLYCINE|Aminoacetic acid|Aminoessigsaeure|glycine|Leimzucker|Gly 0 C2H5NO2 InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5) DHMQDGOQFOQNFH-UHFFFAOYSA-N 75.06664 75.03203 NCC(O)=O PMID:15710237|PMID:17970719|PMID:16444815|Drug_Central:1319|PMID:12631515|PMID:22234938|PMID:22079563|KEGG:C00037|PMID:15331688|PMID:11806864|PMID:22401276|PMID:18440992|DrugBank:DB00145|PMID:16417482|PMID:11019925|PMID:19120667|KEGG:D00011|PMID:12921899|PMID:11174716|PMID:19544666|PMID:16105183|PMID:18079355|PMID:16901953|PMID:19028609|PMID:18840508|Gmelin:1808|PMID:12754315|PDBeChem:GLY|PMID:22264337|PMID:22044190|PMID:16918424|ECMDB:ECMDB00123|MetaCyc:GLY|KNApSAcK:C00001361|PMID:22434786|YMDB:YMDB00016|PMID:16664855|PMID:19449910|PMID:16998855|PMID:15388434|Reaxys:635782|PMID:17582620|PMID:16151895|PMID:19738917|PMID:16214212|PMID:17154252|PMID:18396796|PMID:22293292|PMID:11542461|PMID:17383967|Wikipedia:Glycine|HMDB:HMDB0000123|PMID:18593588|PMID:16986325|PMID:19924257|Beilstein:635782|PMID:19526731|PMID:21751272|PMID:18816054|CAS:56-40-6|PMID:10930630|PMID:12770151|PMID:19916621 CHEBI:10792|CHEBI:5460|CHEBI:24368|CHEBI:14344|CHEBI:42964 chebi_ontology owl:Class CHEBI:15705 biolink:NamedThing L-alpha-amino acid Any alpha-amino acid having L-configuration at the alpha-carbon. monarch-merged.owl L-Amino acid|L-alpha-amino acid|L-2-Amino acid|L-alpha-amino acids 0 C2H4NO2R 74.05870 74.02420 N[C@@H]([*])C(O)=O KEGG:C00151 CHEBI:21224|CHEBI:13072|CHEBI:13797|CHEBI:13243|CHEBI:6175 chebi_ontology owl:Class CHEBI:16449 biolink:NamedThing alanine An alpha-amino acid that consists of propionic acid bearing an amino substituent at position 2. monarch-merged.owl alanine|2-aminopropanoic acid|A|alanina|Alanine|2-Aminopropionic acid|Alanin|ALA|2-Aminopropanoic acid 0 C3H7NO2 InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6) QNAYBMKLOCPYGJ-UHFFFAOYSA-N 89.09322 89.04768 CC(N)C(O)=O Drug_Central:4306|CAS:302-72-7|PMID:22264337|PMID:17439666|Reaxys:635807|Gmelin:2449|Wikipedia:Alanine|KEGG:C01401|Beilstein:635807 CHEBI:22277|CHEBI:13748|CHEBI:2539 chebi_ontology owl:Class CHEBI:16811 biolink:NamedThing methionine A sulfur-containing amino acid that is butyric acid bearing an amino substituent at position 2 and a methylthio substituent at position 4. monarch-merged.owl metionina|2-amino-4-(methylthio)butanoic acid|Met|DL-Methionine|alpha-amino-gamma-methylmercaptobutyric acid|2-Amino-4-(methylthio)butyric acid|M|Racemethionine|Methionine|methionine|2-amino-4-(methylsulfanyl)butanoic acid|Hmet|Methionin 0 C5H11NO2S InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8) FFEARJCKVFRZRR-UHFFFAOYSA-N 149.21238 149.05105 CSCCC(N)C(O)=O PMID:22264337|Gmelin:3117|Reaxys:636185|Beilstein:636185|PMID:2543976|UM-BBD_compID:c0094|Wikipedia:Methionine|CAS:59-51-8|KEGG:D04983|PMID:16702333|KEGG:C01733 CHEBI:6829|CHEBI:25229|CHEBI:14590 chebi_ontology owl:Class CHEBI:17822 biolink:NamedThing serine An alpha-amino acid that is alanine substituted at position 3 by a hydroxy group. monarch-merged.owl Serine|2-Amino-3-hydroxypropionic acid|serine|2-amino-3-hydroxypropanoic acid|3-Hydroxyalanine|Serin 0 C3H7NO3 InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7) MTCFGRXMJLQNBG-UHFFFAOYSA-N 105.09262 105.04259 NC(CO)C(O)=O Reaxys:1721402|Beilstein:1721402|Wikipedia:Serine|Gmelin:26429|KEGG:C00716|CAS:302-84-1|KNApSAcK:C00001393 CHEBI:9116|CHEBI:15081|CHEBI:26648 chebi_ontology owl:Class CHEBI:18186 biolink:NamedThing tyrosine An alpha-amino acid that is phenylalanine bearing a hydroxy substituent at position 4 on the phenyl ring. monarch-merged.owl tyrosine|Y|Tyrosin|2-amino-3-(4-hydroxyphenyl)propanoic acid|2-Amino-3-(p-hydroxyphenyl)propionic acid|Tyr|tirosina|Tyrosine|3-(p-Hydroxyphenyl)alanine 0 C9H11NO3 InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13) OUYCCCASQSFEME-UHFFFAOYSA-N 181.18858 181.07389 NC(Cc1ccc(O)cc1)C(O)=O CAS:556-03-6|Beilstein:515881|KNApSAcK:C00001397|KEGG:C01536|PMID:17190852|Reaxys:515881|Gmelin:27744|CAS:55520-40-6 CHEBI:27176|CHEBI:9800|CHEBI:15277 chebi_ontology owl:Class CHEBI:18237 biolink:NamedThing glutamic acid An alpha-amino acid that is glutaric acid bearing a single amino substituent at position 2. monarch-merged.owl Glutaminsaeure|2-aminopentanedioic acid|2-Aminoglutaric acid|Glu|DL-Glutamic acid|Glutamic acid|Glutaminic acid|glutamic acid|DL-Glutaminic acid|Glutamate|E 0 C5H9NO4 InChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10) WHUUTDBJXJRKMK-UHFFFAOYSA-N 147.12930 147.05316 NC(CCC(O)=O)C(O)=O Gmelin:101971|KNApSAcK:C00019577|PMID:17190852|KEGG:D04341|Reaxys:1723799|KEGG:C00302|Wikipedia:Glutamic_acid|PMID:15739367|KNApSAcK:C00001358|Beilstein:1723799|PMID:24616376|CAS:617-65-2|PMID:24984001 CHEBI:5431|CHEBI:24314 chebi_ontology owl:Class CHEBI:22653 biolink:NamedThing asparagine An alpha-amino acid in which one of the hydrogens attached to the alpha-carbon of glycine is substituted by a 2-amino-2-oxoethyl group. monarch-merged.owl 2,4-diamino-4-oxobutanoic acid|Hasp|DL-Asparagine|Asparagin|2-amino-3-carbamoylpropanoic acid|asparagina|Asn|asparagine|N|ASN 0 C4H8N2O3 InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9) DCXYFEDJOCDNAF-UHFFFAOYSA-N 132.11800 132.05349 NC(CC(N)=O)C(O)=O Beilstein:1723525|Gmelin:279043|CAS:3130-87-8|Wikipedia:Asparagine|PMID:22770225|PMID:22264337|Reaxys:1723525|KEGG:C16438 chebi_ontology owl:Class CHEBI:22660 biolink:NamedThing aspartic acid An alpha-amino acid that consists of succinic acid bearing a single alpha-amino substituent monarch-merged.owl DL-Aminosuccinic acid|D|aspartic acid|Asp|Aspartic acid|(+-)-Aspartic acid|DL-Asparagic acid|(R,S)-Aspartic acid|2-aminobutanedioic acid 0 C4H7NO4 InChI=1S/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9) CKLJMWTZIZZHCS-UHFFFAOYSA-N 133.10272 133.03751 NC(CC(O)=O)C(O)=O KEGG:C16433|Gmelin:185140|Beilstein:774618|Reaxys:774618|CAS:617-45-8|PMID:22264337|Wikipedia:Aspartic_acid chebi_ontology owl:Class CHEBI:25017 biolink:NamedThing leucine A branched-chain amino acid that consists of glycine in which one of the hydrogens attached to the alpha-carbon is substituted by an isobutyl group. monarch-merged.owl (+-)-Leucine|Leuzin|Leucin|leucine|2-amino-4-methylpentanoic acid|(RS)-Leucine|Leu|L|DL-Leucine|Hleu 0 C6H13NO2 InChI=1S/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9) ROHFNLRQFUQHCH-UHFFFAOYSA-N 131.17296 131.09463 CC(C)CC(N)C(O)=O LIPID_MAPS_instance:LMFA01100048|Gmelin:50203|Reaxys:636005|PMID:17439666|CAS:328-39-2|KEGG:C16439|Beilstein:636005|Wikipedia:Leucine chebi_ontology owl:Class CHEBI:25094 biolink:NamedThing lysine A diamino acid that is caproic (hexanoic) acid bearing two amino substituents at positions 2 and 6. monarch-merged.owl 2,6-diaminohexanoic acid|Lysin|LYS|K|lysine|alpha,epsilon-diaminocaproic acid 0 C6H14N2O2 InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10) KDXKERNSBIXSRK-UHFFFAOYSA-N 146.18764 146.10553 NCCCCC(N)C(O)=O Gmelin:279284|Wikipedia:Lysine|CAS:70-54-2|PMID:17439666|Reaxys:1616991|KEGG:C16440|Beilstein:1616991|PMID:22264337 chebi_ontology owl:Class CHEBI:26271 biolink:NamedThing proline An alpha-amino acid that is pyrrolidine bearing a carboxy substituent at position 2. monarch-merged.owl Prolin|DL-Proline|proline|Hpro|pyrrolidine-2-carboxylic acid|prolina 0 C5H9NO2 InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8) ONIBWKKTOPOVIA-UHFFFAOYSA-N 115.13050 115.06333 OC(=O)C1CCCN1 PMID:16534801|Reaxys:80809|CAS:609-36-9|Gmelin:26927|Wikipedia:Proline|PMID:21400017|PMID:21903295|Beilstein:80809|PMID:22280966|KEGG:C16435|PMID:22770225|PMID:22264337 chebi_ontology owl:Class CHEBI:27266 biolink:NamedThing valine A branched-chain amino acid that consists of glycine in which one of the hydrogens attached to the alpha-carbon is substituted by an isopropyl group. monarch-merged.owl 2-amino-3-methylbutanoic acid|DL-valine|Hval|Valin|valina|valine 0 C5H11NO2 InChI=1S/C5H11NO2/c1-3(2)4(6)5(7)8/h3-4H,6H2,1-2H3,(H,7,8) KZSNJWFQEVHDMF-UHFFFAOYSA-N 117.14638 117.07898 CC(C)C(N)C(O)=O PMID:17190852|PMID:22770225|CAS:516-06-3|Beilstein:506689|KEGG:C16436|Reaxys:506689|Wikipedia:Valine|Gmelin:49877 chebi_ontology owl:Class CHEBI:27897 biolink:NamedThing tryptophan An alpha-amino acid that is alanine bearing an indol-3-yl substituent at position 3. monarch-merged.owl tryptophane|Htrp|W|beta-3-indolylalanine|triptofano|2-amino-3-(1H-indol-3-yl)propanoic acid|Tryptophan|alpha-Amino-beta-(3-indolyl)-propionic acid|tryptophan|alpha-amino-beta-3-indolepropionic acid|Trp 0 C11H12N2O2 InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15) QIVBCDIJIAJPQS-UHFFFAOYSA-N 204.22526 204.08988 NC(Cc1c[nH]c2ccccc12)C(O)=O Wikipedia:Tryptophan|KNApSAcK:C00001396|Beilstein:86196|LINCS:LSM-36836|CAS:54-12-6|Reaxys:86196|PMID:22264337|PMID:17439666|Gmelin:4532|KEGG:C00806 CHEBI:27163|CHEBI:9769 chebi_ontology owl:Class CHEBI:28044 biolink:NamedThing phenylalanine An aromatic amino acid that is alanine in which one of the methyl hydrogens is substituted by a phenyl group. monarch-merged.owl DL-Phenylalanine|Phenylalanine|F|2-amino-3-phenylpropanoic acid|alpha-Amino-beta-phenylpropionic acid|Phenylalanin|PHE|fenilalanina|phenylalanine 0 C9H11NO2 InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12) COLNVLDHVKWLRT-UHFFFAOYSA-N 165.18918 165.07898 NC(Cc1ccccc1)C(O)=O PMID:17439666|Gmelin:50836|Beilstein:1910407|PMID:22264337|CAS:150-30-1|Wikipedia:Phenylalanine|KEGG:C02057|Reaxys:1910407 CHEBI:8089|CHEBI:25984 chebi_ontology owl:Class CHEBI:28300 biolink:NamedThing glutamine An alpha-amino acid that consists of butyric acid bearing an amino substituent at position 2 and a carbamoyl substituent at position 4. monarch-merged.owl 2-amino-4-carbamoylbutanoic acid|2-Aminoglutaramic acid|2,5-diamino-5-oxopentanoic acid|glutamic acid gamma-amide|Glutamin|Glutaminsaeure-5-amid|Hgln|Glutamine|glutamine 0 C5H10N2O3 InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10) ZDXPYRJPNDTMRX-UHFFFAOYSA-N 146.14458 146.06914 NC(CCC(N)=O)C(O)=O CAS:6899-04-3|KEGG:C00303|Beilstein:1723795|Wikipedia:Glutamine|Reaxys:1723795|CAS:585-21-7|Gmelin:27318|KNApSAcK:C00001359 CHEBI:24316|CHEBI:5432 chebi_ontology owl:Class CHEBI:29016 biolink:NamedThing arginine An alpha-amino acid that is glycine in which the alpha-is substituted by a 3-guanidinopropyl group. monarch-merged.owl arginine|Harg|Arginin|2-amino-5-(carbamimidamido)pentanoic acid|2-Amino-5-guanidinovaleric acid|Arginine|2-amino-5-guanidinopentanoic acid 0 C6H14N4O2 InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10) ODKSFYDXXFIFQN-UHFFFAOYSA-N 174.20112 174.11168 NC(CCCNC(N)=N)C(O)=O Wikipedia:L-Arginine|CAS:7200-25-1|KEGG:C02385|Beilstein:1725411|PMID:10848923|Reaxys:1725411 CHEBI:2643|CHEBI:22616 chebi_ontology owl:Class CHEBI:38263 biolink:NamedThing 2-amino-3-hydroxybutanoic acid An alpha-amino acid that is butanoic acid substituted by an amino group at position 2 and a hydroxy group at position 3. monarch-merged.owl 2-amino-3-hydroxybutanoic acid 0 C4H9NO3 InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8) AYFVYJQAPQTCCC-UHFFFAOYSA-N 119.11920 119.05824 CC(O)C(N)C(O)=O Beilstein:1098902 chebi_ontology owl:Class CHEBI:38264 biolink:NamedThing 2-amino-3-methylpentanoic acid A branched chain amino acid that consists of 3-methylpentanoic acid bearing an amino substituent at position 2. monarch-merged.owl 2-amino-3-methylpentanoic acid 0 C6H13NO2 InChI=1S/C6H13NO2/c1-3-4(2)5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9) AGPKZVBTJJNPAG-UHFFFAOYSA-N 131.17296 131.09463 CCC(C)C(N)C(O)=O CAS:443-79-8|PMID:10944265|KEGG:C16434|Reaxys:1721790 chebi_ontology owl:Class CHEBI:83925 biolink:NamedThing non-proteinogenic alpha-amino acid Any alpha-amino acid which is not a member of the group of 23 proteinogenic amino acids. monarch-merged.owl non-proteinogenic alpha-amino-acids|non-proteinogenic alpha-amino-acid|non-proteinogenic alpha-amino acids chebi_ontology owl:Class CHEBI:9093 biolink:NamedThing selenocysteine monarch-merged.owl owl:Class CHEBI:63442 biolink:NamedThing hexonic acid derivative monarch-merged.owl owl:Class CHEBI:131967 biolink:NamedThing (4S,5R)-4,5,6-trihydroxy-2-iminohexanoic acid monarch-merged.owl owl:Class CHEBI:23591 biolink:NamedThing dehydroamino acid monarch-merged.owl owl:Class CHEBI:145326 biolink:NamedThing 2,3-dehydroamino acid monarch-merged.owl owl:Class CHEBI:16352 biolink:NamedThing 4-hydroxy-1-pyrroline-2-carboxylic acid monarch-merged.owl owl:Class CHEBI:53647 biolink:NamedThing dehydroglycine monarch-merged.owl owl:Class CHEBI:33272 biolink:NamedThing ketimine monarch-merged.owl owl:Class CHEBI:50616 biolink:NamedThing iminoaspartic acid monarch-merged.owl owl:Class CHEBI:131969 biolink:NamedThing (11S,12R)-EET(1-) monarch-merged.owl owl:Class CHEBI:131970 biolink:NamedThing (11R,12S)-EET(1-) monarch-merged.owl owl:Class CHEBI:13197 biolink:NamedThing ribonucleoside 3'-monophosphate(2-) monarch-merged.owl owl:Class CHEBI:131974 biolink:NamedThing (8S,9R)-EET(1-) monarch-merged.owl owl:Class CHEBI:131975 biolink:NamedThing (8R,9S)-EET(1-) monarch-merged.owl owl:Class CHEBI:63473 biolink:NamedThing aromatic amino-acid anion An aromatic amino acid whose alpha-carboxylic acid group is ionized (non-protonated). monarch-merged.owl aromatic amino-acid anions chebi_ontology owl:Class CHEBI:17836 biolink:NamedThing 4-aminobenzoate monarch-merged.owl owl:Class CHEBI:36557 biolink:NamedThing N-methylanthranilate monarch-merged.owl owl:Class CHEBI:36559 biolink:NamedThing 3-hydroxyanthranilate monarch-merged.owl owl:Class CHEBI:60005 biolink:NamedThing 3-amino-4-hydroxybenzoate monarch-merged.owl owl:Class CHEBI:131987 biolink:NamedThing 2-docosahexaenoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:57875 biolink:NamedThing 2-acyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:137582 biolink:NamedThing 2-[(11R)-hydroxy-(5Z,8Z,12E,14Z)-icosatetraenoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:137583 biolink:NamedThing 2-[(15R)-hydroxy-(5Z,8Z,11Z,13E)-icosatetraenoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:137584 biolink:NamedThing 2-[(15S)-hydroxy-(5Z,8Z,11Z,13E)-icosatetraenoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:137585 biolink:NamedThing 2-[(5Z,13E,15S)-11alpha,15-dihydroxy-9-oxoprosta-5,13-dien-1-oyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:138100 biolink:NamedThing 2-[(9S,11R)-epidioxy-(15S)-hydroperoxy-(5Z,13E)-prostadienoyl]-sn-glycero-3- phosphocholine monarch-merged.owl owl:Class CHEBI:138266 biolink:NamedThing 2-heptanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:140082 biolink:NamedThing 2-octanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:140088 biolink:NamedThing 2-dodecanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:167119 biolink:NamedThing oxidized 2-acyl-sn-glycero-3-phosphocholine zwitterion monarch-merged.owl owl:Class CHEBI:76071 biolink:NamedThing 2-oleoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:91297 biolink:NamedThing lysophosphatidylcholine(0:0/16:0) monarch-merged.owl owl:Class CHEBI:91299 biolink:NamedThing lysophosphatidylcholine(0:0/18:0) monarch-merged.owl owl:Class CHEBI:91302 biolink:NamedThing lysophosphatidylcholine(0:0/18:2) monarch-merged.owl owl:Class CHEBI:91303 biolink:NamedThing lysophosphatidylcholine(0:0/20:4) monarch-merged.owl owl:Class CHEBI:61526 biolink:NamedThing (E)-hexadec-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62242 biolink:NamedThing trans-oct-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71412 biolink:NamedThing trans-2-octadecenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71460 biolink:NamedThing (E)-isopentadec-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71462 biolink:NamedThing (E)-isoheptadec-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74693 biolink:NamedThing trans-2-tetracosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76292 biolink:NamedThing trans-2-nonenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76360 biolink:NamedThing (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76364 biolink:NamedThing (2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76383 biolink:NamedThing trans-2-octacosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76385 biolink:NamedThing trans-2-triacontenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76393 biolink:NamedThing (2E,15Z)-tetracosadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76418 biolink:NamedThing (2E,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76421 biolink:NamedThing (2E,11Z,14Z,17Z,20Z)-hexacosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76428 biolink:NamedThing (2E,13Z,16Z,19Z,22Z)-octacosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76431 biolink:NamedThing (2E,15Z,18Z,21Z,24Z)-triacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76434 biolink:NamedThing (2E,17Z,20Z,23Z,26Z)-dotriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76436 biolink:NamedThing (2E,19Z,22Z,25Z,28Z)-tetratriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76438 biolink:NamedThing (2E,21Z,24Z,27Z,30Z)-hexatriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76441 biolink:NamedThing (2E,23Z,26Z,29Z,32Z)-octatriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76464 biolink:NamedThing (2E,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76467 biolink:NamedThing (2E,11Z,14Z,17Z,20Z,23Z)-hexacosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76469 biolink:NamedThing (2E,13Z,16Z,19Z,22Z,25Z)-octacosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76471 biolink:NamedThing (2E,15Z,18Z,21Z,24Z,27Z)-triacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76474 biolink:NamedThing (2E,17Z,20Z,23Z,26Z,29Z)-dotriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76476 biolink:NamedThing (2E,19Z,22Z,25Z,28Z,31Z)-tetratriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76479 biolink:NamedThing (2E,21Z,24Z,27Z,30Z,33Z)-hexatriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76483 biolink:NamedThing (2E,23Z,26Z,29Z,32Z,35Z)-octatriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76493 biolink:NamedThing (2E,8Z,11Z,14Z,17Z,20Z,23Z)-hexacosaheptaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76495 biolink:NamedThing (2E,10Z,13Z,16Z,19Z,22Z,25Z)-octacosaheptaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76497 biolink:NamedThing (2E,12Z,15Z,18Z,21Z,24Z,27Z)-triacontaheptaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76504 biolink:NamedThing (2E,14Z,17Z,20Z,23Z,26Z,29Z)-dotriacontaheptaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76506 biolink:NamedThing (2E,16Z,19Z,22Z,25Z,28Z,31Z)-tetratriacontaheptaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76514 biolink:NamedThing (2E,18Z,21Z,24Z,27Z,30Z,33Z)-hexatriacontaheptaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76558 biolink:NamedThing (2E,11Z)-octadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77552 biolink:NamedThing (2E,9E)-octadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77553 biolink:NamedThing (2E,9Z)-octadecadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77558 biolink:NamedThing (2E,9Z,12Z)-octadecatrienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77559 biolink:NamedThing (2E,4Z,7Z,10Z,13Z,16Z,19Z)-docosaheptaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83726 biolink:NamedThing medium-chain 2,3-trans-enoyl CoA(4-) monarch-merged.owl owl:Class CHEBI:83727 biolink:NamedThing long-chain 2,3-trans-enoyl CoA(4-) monarch-merged.owl owl:Class CHEBI:83728 biolink:NamedThing very long-chain 2,3-trans-enoyl CoA(4-) monarch-merged.owl owl:Class CHEBI:85097 biolink:NamedThing 4-saturated trans-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85099 biolink:NamedThing (2E,4Z)-dienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85101 biolink:NamedThing trans,trans-2,4-dienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86160 biolink:NamedThing (2E)-pentenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:87488 biolink:NamedThing short-chain 2,3-trans-enoyl CoA(4-) monarch-merged.owl owl:Class CHEBI:85100 biolink:NamedThing 4,5-saturated-trans-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:131992 biolink:NamedThing 5,6-EET(1-) monarch-merged.owl owl:Class CHEBI:131993 biolink:NamedThing lysophosphatidylethanolamine 22:5 monarch-merged.owl owl:Class CHEBI:64574 biolink:NamedThing lysophosphatidylethanolamine monarch-merged.owl owl:Class CHEBI:132559 biolink:NamedThing lysophosphatidylethanolamine 20:5 monarch-merged.owl owl:Class CHEBI:136141 biolink:NamedThing lysophosphatidylethanolamine 22:4 monarch-merged.owl owl:Class CHEBI:138532 biolink:NamedThing lysophosphatidylethanolamine 17:0 monarch-merged.owl owl:Class CHEBI:145245 biolink:NamedThing lysophosphatidylethanolamine 14:1 monarch-merged.owl owl:Class CHEBI:145247 biolink:NamedThing lysophosphatidylethanolamine 16:1 monarch-merged.owl owl:Class CHEBI:145255 biolink:NamedThing lysophosphatidylethanolamine 18:3 monarch-merged.owl owl:Class CHEBI:145264 biolink:NamedThing lysophosphatidylethanolamine 22:2 monarch-merged.owl owl:Class CHEBI:55493 biolink:NamedThing 1-O-acylglycerophosphoethanolamine monarch-merged.owl owl:Class CHEBI:64569 biolink:NamedThing lysophosphatidylethanolamine 20:4 monarch-merged.owl owl:Class CHEBI:64575 biolink:NamedThing lysophosphatidylethanolamine 18:1 monarch-merged.owl owl:Class CHEBI:64576 biolink:NamedThing lysophosphatidylethanolamine 18:0 monarch-merged.owl owl:Class CHEBI:72735 biolink:NamedThing lysophosphatidylethanolamine 20:3 monarch-merged.owl owl:Class CHEBI:90452 biolink:NamedThing lysophosphatidylethanolamine 16:0 monarch-merged.owl owl:Class CHEBI:132001 biolink:NamedThing cholesteryl octadecenoate monarch-merged.owl owl:Class CHEBI:17002 biolink:NamedThing cholesteryl ester A sterol ester obtained by formal condensation of the carboxy group of any carboxylic acid with the 3-hydroxy group of cholesterol. monarch-merged.owl Cholesterol ester|a cholesterol ester|cholesteryl esters|cholesterol esters 0 C28H45O2R 413.65570 413.34196 [H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4C[C@H](CC[C@]4(C)[C@@]3([H])CC[C@]12C)OC([*])=O)[C@H](C)CCCC(C)C KEGG:C02530|PMID:2474544 CHEBI:3660|CHEBI:13983|CHEBI:23205 chebi_ontology owl:Class CHEBI:132002 biolink:NamedThing cholesteryl octadecadienoate monarch-merged.owl owl:Class CHEBI:132004 biolink:NamedThing cholesteryl octadecatrienoate monarch-merged.owl owl:Class CHEBI:132006 biolink:NamedThing cholesteryl icosatetraenoate monarch-merged.owl owl:Class CHEBI:132007 biolink:NamedThing cholesteryl icosapentaenoate monarch-merged.owl owl:Class CHEBI:138331 biolink:NamedThing cholesteryl icosatrienoate monarch-merged.owl owl:Class CHEBI:3663 biolink:NamedThing cholesteryl palmitate monarch-merged.owl owl:Class CHEBI:82750 biolink:NamedThing cholesteryl stearate monarch-merged.owl owl:Class CHEBI:132008 biolink:NamedThing 5,10-dihydrophenazine monarch-merged.owl owl:Class CHEBI:39201 biolink:NamedThing phenazines monarch-merged.owl owl:Class CHEBI:132261 biolink:NamedThing (1R,5aS,6R)-1,4,5,5a,6,9-hexahydrophenazine-1,6-dicarboxylic acid monarch-merged.owl owl:Class CHEBI:132262 biolink:NamedThing (1R,10aS)-1,4,10,10a-tetrahydrophenazine-1,6-dicarboxylic acid monarch-merged.owl owl:Class CHEBI:132263 biolink:NamedThing (5aS)-5,5a-dihydrophenazine-1,6-dicarboxylic acid monarch-merged.owl owl:Class CHEBI:132264 biolink:NamedThing 5,10-dihydrophenazine-1,6-dicarboxylic acid monarch-merged.owl owl:Class CHEBI:132265 biolink:NamedThing (1R,10aS)-1,4,10,10a-tetrahydrophenazine-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:132266 biolink:NamedThing (10aS)-10,10a-dihydrophenazine-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:132306 biolink:NamedThing (1R)-1,4,5,10-tetrahydrophenazine-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:29118 biolink:NamedThing methanophenazine monarch-merged.owl owl:Class CHEBI:36674 biolink:NamedThing phenazine monarch-merged.owl owl:Class CHEBI:50375 biolink:NamedThing dihydromethanophenazine monarch-merged.owl owl:Class CHEBI:62216 biolink:NamedThing 1-hydroxyphenazine monarch-merged.owl owl:Class CHEBI:79181 biolink:NamedThing 5,10-dihydrophenazine-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:8653 biolink:NamedThing pyocyanine monarch-merged.owl owl:Class CHEBI:132011 biolink:NamedThing S-butyryl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132023 biolink:NamedThing S-acyl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132012 biolink:NamedThing S-hexanoyl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132013 biolink:NamedThing S-octanoyl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132014 biolink:NamedThing S-decanoyl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132015 biolink:NamedThing S-dodecanoyl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132017 biolink:NamedThing S-tetradecanoyl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132018 biolink:NamedThing S-hexadecanoyl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132020 biolink:NamedThing S-choloyl-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132021 biolink:NamedThing S-(3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl)-4'-phosphopantetheine(2-) monarch-merged.owl owl:Class CHEBI:132016 biolink:NamedThing 17-HETE(1-) monarch-merged.owl owl:Class CHEBI:132019 biolink:NamedThing 16-HETE(1-) monarch-merged.owl owl:Class CHEBI:133345 biolink:NamedThing 10-HETE(1-) monarch-merged.owl owl:Class CHEBI:136523 biolink:NamedThing 7-HETE(1-) monarch-merged.owl owl:Class CHEBI:136524 biolink:NamedThing 13-HETE(1-) monarch-merged.owl owl:Class CHEBI:65341 biolink:NamedThing 5-HETE(1-) An unsaturated fatty acid anion that is the conjugate base of 5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid, obtained by deprotonation of the carboxy group. monarch-merged.owl 5-hydroxy-6E,8Z,11Z,14Z-eicosatetraenoate|5-hydroxy-(6E,8Z,11Z,14Z)-eicosatetraenoate|(6E,8Z,11Z,14Z)-5-hydroxyeicosa-6,8,11,14-tetraenoate|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoate|(6E,8Z,11Z,14Z)-5-hydroxyicosa-6,8,11,14-tetraenoate -1 C20H31O3 InChI=1S/C20H32O3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-16-19(21)17-15-18-20(22)23/h6-7,9-10,12-14,16,19,21H,2-5,8,11,15,17-18H2,1H3,(H,22,23)/p-1/b7-6-,10-9-,13-12-,16-14+ KGIJOOYOSFUGPC-XTDASVJISA-M 319.45830 319.22787 CCCCC\C=C/C\C=C/C\C=C/C=C/C(O)CCCC([O-])=O chebi_ontology owl:Class CHEBI:132022 biolink:NamedThing 12-hydroxyjasmonate monarch-merged.owl owl:Class CHEBI:47942 biolink:NamedThing pantetheine 4'-phosphate(2-) monarch-merged.owl owl:Class CHEBI:140260 biolink:NamedThing (4Z,7Z,10Z,13Z,15E,19Z)-17-hydroxydocosahexaenoate monarch-merged.owl owl:Class CHEBI:132030 biolink:NamedThing glycoursodeoxycholate monarch-merged.owl owl:Class CHEBI:137818 biolink:NamedThing 7-oxoglycolithocholate monarch-merged.owl owl:Class CHEBI:137824 biolink:NamedThing 7-oxoglycodeoxycholate monarch-merged.owl owl:Class CHEBI:17179 biolink:NamedThing taurolithocholate monarch-merged.owl owl:Class CHEBI:29746 biolink:NamedThing glycocholate monarch-merged.owl owl:Class CHEBI:36252 biolink:NamedThing glycochenodeoxycholate monarch-merged.owl owl:Class CHEBI:132966 biolink:NamedThing hippurate An N-acylglycinate obtained by deprotonation of the carboxy group of hippuric acid (N-benzoylglycine) and its derivatives. monarch-merged.owl N-benzoylglycinate|hippurates|N-benzoylglycinates|N-benzoylglycine anions|N-benzoylglycine anion chebi_ontology owl:Class CHEBI:133992 biolink:NamedThing N-oleoylglycinate monarch-merged.owl owl:Class CHEBI:134041 biolink:NamedThing N-octadecanoylglycinate monarch-merged.owl owl:Class CHEBI:134042 biolink:NamedThing N-[(9Z)-hexadecenoyl]glycinate monarch-merged.owl owl:Class CHEBI:149742 biolink:NamedThing N-(fatty acyl)-glycine(1-) monarch-merged.owl owl:Class CHEBI:368997 biolink:NamedThing N-benzyloxycarbonylglycinate monarch-merged.owl owl:Class CHEBI:58236 biolink:NamedThing N-feruloylglycinate monarch-merged.owl owl:Class CHEBI:59002 biolink:NamedThing N-arachidonoylglycinate monarch-merged.owl owl:Class CHEBI:60007 biolink:NamedThing sulfoglycolithocholate(2-) monarch-merged.owl owl:Class CHEBI:60008 biolink:NamedThing glycolithocholate monarch-merged.owl owl:Class CHEBI:61887 biolink:NamedThing N-acetylglycinate monarch-merged.owl owl:Class CHEBI:82982 biolink:NamedThing glycodeoxycholate monarch-merged.owl owl:Class CHEBI:86500 biolink:NamedThing N-myristoylglycinate monarch-merged.owl owl:Class CHEBI:87391 biolink:NamedThing N-icosanoylglycinate monarch-merged.owl owl:Class CHEBI:87410 biolink:NamedThing N-docosanoylglycinate monarch-merged.owl owl:Class CHEBI:87414 biolink:NamedThing N-hexacosanoylglycinate monarch-merged.owl owl:Class CHEBI:132040 biolink:NamedThing fatty acid-taurine conjugate(1-) monarch-merged.owl owl:Class CHEBI:58246 biolink:NamedThing sulfonatoacetaldehyde monarch-merged.owl owl:Class CHEBI:77135 biolink:NamedThing 3-sulfolactaldehyde(1-) monarch-merged.owl owl:Class CHEBI:77138 biolink:NamedThing 3-sulfopropanediol(1-) monarch-merged.owl owl:Class CHEBI:132722 biolink:NamedThing N-arachidonoyl-gamma-aminobutyric acid monarch-merged.owl owl:Class CHEBI:134021 biolink:NamedThing N-oleoyl-L-phenylalanine monarch-merged.owl owl:Class CHEBI:136606 biolink:NamedThing N-arachidonoyl-L-phenylalanine monarch-merged.owl owl:Class CHEBI:136618 biolink:NamedThing N-[(9Z)-hexadecenoyl]glycine monarch-merged.owl owl:Class CHEBI:136623 biolink:NamedThing N-octadecanoylglycine monarch-merged.owl owl:Class CHEBI:136716 biolink:NamedThing N-(fatty acyl)-L-alpha-amino acid anion monarch-merged.owl owl:Class CHEBI:137043 biolink:NamedThing N-[(+)-7-isojasmonyl]-L-isoleucine monarch-merged.owl owl:Class CHEBI:137550 biolink:NamedThing N-(fatty acyl)-L-alpha-amino acid monarch-merged.owl owl:Class CHEBI:139302 biolink:NamedThing N-[(3R)-jasmonyl]-L-isoleucine monarch-merged.owl owl:Class CHEBI:156403 biolink:NamedThing hydroperoxy fatty amide monarch-merged.owl owl:Class CHEBI:15860 biolink:NamedThing N-methylhexanamide monarch-merged.owl owl:Class CHEBI:15897 biolink:NamedThing N-(long-chain-acyl)ethanolamine monarch-merged.owl owl:Class CHEBI:167098 biolink:NamedThing N-(fatty acyl)-ethanolamine monarch-merged.owl owl:Class CHEBI:18120 biolink:NamedThing 5-aminopentanamide monarch-merged.owl owl:Class CHEBI:22965 biolink:NamedThing butanamides monarch-merged.owl owl:Class CHEBI:58961 biolink:NamedThing N-arachidonoylglycine monarch-merged.owl owl:Class CHEBI:73723 biolink:NamedThing N-oleoylglycine monarch-merged.owl owl:Class CHEBI:85281 biolink:NamedThing N-(polyunsaturated fatty acyl)ethanolamine monarch-merged.owl owl:Class CHEBI:87142 biolink:NamedThing N-myristoylglycine monarch-merged.owl owl:Class CHEBI:87764 biolink:NamedThing N-docosanoylglycine monarch-merged.owl owl:Class CHEBI:87768 biolink:NamedThing N-hexacosanoylglycine monarch-merged.owl owl:Class CHEBI:132042 biolink:NamedThing N-dodecanoyltaurine(1-) monarch-merged.owl owl:Class CHEBI:132043 biolink:NamedThing N-tetradecanoyltaurine(1-) monarch-merged.owl owl:Class CHEBI:132045 biolink:NamedThing N-hexadecanoyltaurine(1-) monarch-merged.owl owl:Class CHEBI:132047 biolink:NamedThing N-stearoyltaurine(1-) monarch-merged.owl owl:Class CHEBI:132048 biolink:NamedThing N-icosanoyltaurine(1-) monarch-merged.owl owl:Class CHEBI:132049 biolink:NamedThing N-tetracosanoyltaurine(1-) monarch-merged.owl owl:Class CHEBI:132060 biolink:NamedThing N-arachidonoyltaurine(1-) monarch-merged.owl owl:Class CHEBI:132061 biolink:NamedThing N-[12(S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]taurine(1-) monarch-merged.owl owl:Class CHEBI:132062 biolink:NamedThing N-[15(S)-hydroperoxy-(5Z,8Z,11Z,13E)-icosatetraenoyl]taurine(1-) monarch-merged.owl owl:Class CHEBI:132044 biolink:NamedThing Deoxymethylsphingoid base monarch-merged.owl owl:Class CHEBI:35785 biolink:NamedThing sphingoid Sphinganine, its homologs and stereoisomers, and the hydroxy and unsaturated derivatives of these compounds. monarch-merged.owl sphingoids|sphingoid bases|sphingoid base|Spd|sphingoid LIPID_MAPS_class:LMSP01 chebi_ontology owl:Class CHEBI:132046 biolink:NamedThing Deoxysphingoid base monarch-merged.owl owl:Class CHEBI:46963 biolink:NamedThing 2-aminooctadecene-1,3-diol An aminodiol composed of any octadecene having hydroxy functional groups at positions 1 and 3 and an amino substituent at position 2. monarch-merged.owl 2-aminooctadecene-1,3-diol|2-aminooctadecene-1,3-diols 0 C18H37NO2 299.493 299.28243 chebi_ontology owl:Class CHEBI:46966 biolink:NamedThing 2-amino-1-hydroxyoctadecan-3-one monarch-merged.owl ketodihydrosphingosine|3-ketosphinganine|2-amino-1-hydroxy-3-octadecanone|2-amino-1-hydroxyoctadecan-3-one|1-hydroxy-2-amino-3-oxo-octadecane 0 C18H37NO2 InChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)17(19)16-20/h17,20H,2-16,19H2,1H3 KBUNOSOGGAARKZ-UHFFFAOYSA-N 299.49192 299.28243 CCCCCCCCCCCCCCCC(=O)C(N)CO Beilstein:1874784|CAS:16105-69-4 chebi_ontology owl:Class CHEBI:46968 biolink:NamedThing 2-aminooctadecane-1,3-diol An aminodiol that is octadecane bearing two hydroxy substituents at positions 1 and 3 as well as an amino substituent at position 2. monarch-merged.owl 2-aminooctadecane-1,3-diol|2-amino-1,3-octadecanediol 0 C18H39NO2 InChI=1S/C18H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)17(19)16-20/h17-18,20-21H,2-16,19H2,1H3 OTKJDMGTUTTYMP-UHFFFAOYSA-N 301.50780 301.29808 CCCCCCCCCCCCCCCC(O)C(N)CO Beilstein:1772584 chebi_ontology owl:Class CHEBI:64907 biolink:NamedThing 2-aminoicosane-1,3-diol monarch-merged.owl owl:Class CHEBI:64910 biolink:NamedThing C20 phytosphingosine monarch-merged.owl owl:Class CHEBI:65118 biolink:NamedThing C20 3-dehydrosphinganine monarch-merged.owl owl:Class CHEBI:67106 biolink:NamedThing 1-deoxysphinganine monarch-merged.owl owl:Class CHEBI:67176 biolink:NamedThing 1-deoxy-3-dehydrosphinganine monarch-merged.owl owl:Class CHEBI:67186 biolink:NamedThing 1-deoxymethyl-3-dehydrosphinganine monarch-merged.owl owl:Class CHEBI:67187 biolink:NamedThing 1-deoxymethylsphinganine monarch-merged.owl owl:Class CHEBI:70798 biolink:NamedThing 15-methylhexadecasphing-4-enine monarch-merged.owl owl:Class CHEBI:70843 biolink:NamedThing 3-dehydro-15-methylhexadecasphinganine monarch-merged.owl owl:Class CHEBI:70852 biolink:NamedThing 15-methylhexadecasphinganine monarch-merged.owl owl:Class CHEBI:71041 biolink:NamedThing 3-dehydrohexadecasphinganine monarch-merged.owl owl:Class CHEBI:71043 biolink:NamedThing 3-dehydrotetradecasphinganine monarch-merged.owl owl:Class CHEBI:71046 biolink:NamedThing tetradecasphinganine monarch-merged.owl owl:Class CHEBI:71050 biolink:NamedThing hexadecasphinganine monarch-merged.owl owl:Class CHEBI:71052 biolink:NamedThing hexadecasphing-4-enine monarch-merged.owl owl:Class CHEBI:71982 biolink:NamedThing C20 sphingosine monarch-merged.owl owl:Class CHEBI:72800 biolink:NamedThing sphinga-4E,8E-dienine monarch-merged.owl owl:Class CHEBI:74220 biolink:NamedThing C17 sphingosine monarch-merged.owl owl:Class CHEBI:84410 biolink:NamedThing sphingoid base(1+) A cationic sphingoid obtained by protonation of the amino group of any 2-amino-1,3-dihydroxysphingoid base. monarch-merged.owl a sphingoid base|2-amino-1,3-dihydroxysphingoid base(1+) +1 C3H9NO2R 91.10850 91.06333 [NH3+][C@@H](CO)[C@H](O)[*] chebi_ontology owl:Class CHEBI:67108 biolink:NamedThing 1-deoxymethylsphinganine(1+) monarch-merged.owl owl:Class CHEBI:67109 biolink:NamedThing 1-deoxysphinganine(1+) monarch-merged.owl owl:Class CHEBI:67177 biolink:NamedThing 1-deoxymethyl-3-dehydrosphinganine(1+) monarch-merged.owl owl:Class CHEBI:68828 biolink:NamedThing 1-deoxy-3-dehydrosphinganine(1+) monarch-merged.owl owl:Class CHEBI:77956 biolink:NamedThing L-erythro-sphingosine(1+) A cationic sphingoid resulting from the protonation of the amino group of L-erythro-sphingosine; major species at pH 7.3. monarch-merged.owl (2R,3S,4E)-1,3-dihydroxyoctadec-4-en-2-aminium|D-erythro-sphing-4-enine|L-erythro-sphing-4-enine(1+)|L-erythro-sphing-4-enine +1 C18H38NO2 InChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)17(19)16-20/h14-15,17-18,20-21H,2-13,16,19H2,1H3/p+1/b15-14+/t17-,18+/m1/s1 WWUZIQQURGPMPG-MCXRAWCPSA-O 300.49930 300.28971 CCCCCCCCCCCCC\C=C\[C@H](O)[C@H]([NH3+])CO PMID:12783875|PMID:632688 chebi_ontology owl:Class CHEBI:84411 biolink:NamedThing 3-dehydrosphingoid base(1+) A cationic sphingoid obtained by protonation of the amino group of any 3-dehydrosphingoid base. Major species at pH 7.3. monarch-merged.owl a 3-oxo-sphingoid base|3-oxosphingoid base(1+)|3-ketosphingoid base(1+) +1 C3H7NO2R 89.09260 89.04768 [NH3+][C@@H](CO)C([*])=O chebi_ontology owl:Class CHEBI:132063 biolink:NamedThing (12S)-hydroperoxy-(14R,15S)-epoxy-(5Z,8Z,10E)-icosatrienoate monarch-merged.owl owl:Class CHEBI:132065 biolink:NamedThing (12S)-hydroperoxy-(14S,15R)-epoxy-(5Z,8Z,10E)-icosatrienoate monarch-merged.owl owl:Class CHEBI:132067 biolink:NamedThing (5S)-hydroperoxy-(14R,15S)-epoxy-(6E,8Z,11Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:132068 biolink:NamedThing (8S)-hydroperoxy-(14S,15R)-epoxy-(5Z,9E,11Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:132066 biolink:NamedThing S-(1-hydroxy-2-methylbut-3-en-2-yl)glutathione monarch-merged.owl owl:Class CHEBI:24337 biolink:NamedThing glutathione derivative Any organonitrogen compound derived from the Glu-Cys-Gly tripeptide glutathione. monarch-merged.owl glutathione derivatives chebi_ontology owl:Class CHEBI:132118 biolink:NamedThing S-(2-carboxy-2-methylbut-3-en-2-yl)glutathione monarch-merged.owl owl:Class CHEBI:132122 biolink:NamedThing S-(2-methyl-1-oxobut-3-en-2-yl)glutathione monarch-merged.owl owl:Class CHEBI:145544 biolink:NamedThing S-nitrosoglutathione(1-) monarch-merged.owl owl:Class CHEBI:15694 biolink:NamedThing (R)-S-lactoylglutathione monarch-merged.owl owl:Class CHEBI:16613 biolink:NamedThing glutathionylspermidine monarch-merged.owl owl:Class CHEBI:17021 biolink:NamedThing S-substituted glutathione monarch-merged.owl owl:Class CHEBI:17491 biolink:NamedThing S-(2-hydroxyacyl)glutathione monarch-merged.owl owl:Class CHEBI:17586 biolink:NamedThing CoA-glutathione monarch-merged.owl owl:Class CHEBI:17842 biolink:NamedThing trypanothione monarch-merged.owl owl:Class CHEBI:17858 biolink:NamedThing glutathione disulfide monarch-merged.owl GSSG|Oxidized glutathione|Oxiglutatione|(2S,2'S)-5,5'-[disulfanediylbis({(2R)-3-[(carboxymethyl)amino]-3-oxopropane-1,2-diyl}imino)]bis(2-amino-5-oxopentanoic acid)|Glutathione disulfide|OXIDIZED GLUTATHIONE DISULFIDE|glutathione disulphide|oxidised glutathione 0 C20H32N6O12S2 InChI=1S/C20H32N6O12S2/c21-9(19(35)36)1-3-13(27)25-11(17(33)23-5-15(29)30)7-39-40-8-12(18(34)24-6-16(31)32)26-14(28)4-2-10(22)20(37)38/h9-12H,1-8,21-22H2,(H,23,33)(H,24,34)(H,25,27)(H,26,28)(H,29,30)(H,31,32)(H,35,36)(H,37,38)/t9-,10-,11-,12-/m0/s1 YPZRWBKMTBYPTK-BJDJZHNGSA-N 612.63332 612.15196 N[C@@H](CCC(=O)N[C@@H](CSSC[C@H](NC(=O)CC[C@H](N)C(O)=O)C(=O)NCC(O)=O)C(=O)NCC(O)=O)C(O)=O KEGG:D00031|Drug_Central:5130|KEGG:C00127|CAS:27025-41-8|DrugBank:DB03310|PDBeChem:GDS CHEBI:7840|CHEBI:42832|CHEBI:24336|CHEBI:14720|CHEBI:14328 chebi_ontology owl:Class CHEBI:22229 biolink:NamedThing acylglutathione monarch-merged.owl owl:Class CHEBI:24335 biolink:NamedThing glutathione conjugate monarch-merged.owl owl:Class CHEBI:26634 biolink:NamedThing selenodiglutathione monarch-merged.owl owl:Class CHEBI:43056 biolink:NamedThing L-gamma-glutamyl-S-nitroso-D-cysteinylglycine(2-) monarch-merged.owl owl:Class CHEBI:50091 biolink:NamedThing S-nitrosoglutathione monarch-merged.owl owl:Class CHEBI:59399 biolink:NamedThing glutathione amide monarch-merged.owl owl:Class CHEBI:59403 biolink:NamedThing glutathione amide disulfide monarch-merged.owl owl:Class CHEBI:64729 biolink:NamedThing glutathioselenol monarch-merged.owl owl:Class CHEBI:132069 biolink:NamedThing (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate monarch-merged.owl owl:Class CHEBI:36982 biolink:NamedThing cyclic purine nucleotide monarch-merged.owl cyclic purine nucleotides chebi_ontology owl:Class CHEBI:19217 biolink:NamedThing 2',3'-cyclic purine nucleotide monarch-merged.owl owl:Class CHEBI:19834 biolink:NamedThing 3',5'-cyclic purine nucleotide monarch-merged.owl 3',5'-cyclic purine nucleotides chebi_ontology owl:Class CHEBI:31445 biolink:NamedThing cyclic ADP-ribose monarch-merged.owl owl:Class CHEBI:47037 biolink:NamedThing cyclic purine dinucleotide monarch-merged.owl owl:Class CHEBI:76081 biolink:NamedThing 2'-phospho-cyclic ADP-ribose monarch-merged.owl owl:Class CHEBI:136439 biolink:NamedThing (5Z,11Z,14Z,17Z)-8,9-epoxyicosatetraenoate monarch-merged.owl owl:Class CHEBI:136441 biolink:NamedThing (5Z,8Z,14Z,17Z)-11,12-epoxyicosatetraenoate monarch-merged.owl owl:Class CHEBI:136443 biolink:NamedThing (5Z,8Z,11Z,17Z)-14,15-epoxyicosatetraenoate monarch-merged.owl owl:Class CHEBI:76634 biolink:NamedThing 17(R),18(S)-EETeTr(1-) monarch-merged.owl owl:Class CHEBI:76635 biolink:NamedThing 17(S),18(R)-EETeTr(1-) monarch-merged.owl owl:Class CHEBI:133346 biolink:NamedThing 12-oxo-20-hydroxyleukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:137390 biolink:NamedThing 19-hydroxyleukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:137391 biolink:NamedThing 18-hydroxyleukotriene B4(1-) monarch-merged.owl owl:Class CHEBI:132071 biolink:NamedThing N-arachidonoyl-L-alaninate monarch-merged.owl owl:Class CHEBI:134020 biolink:NamedThing N-oleoyl-L-phenylalaninate monarch-merged.owl owl:Class CHEBI:134022 biolink:NamedThing N-arachidonoyl-L-phenylalaninate monarch-merged.owl owl:Class CHEBI:134031 biolink:NamedThing N-oleoyl-L-serinate monarch-merged.owl owl:Class CHEBI:134033 biolink:NamedThing N-oleoyl-L-glutaminate monarch-merged.owl owl:Class CHEBI:134035 biolink:NamedThing N-oleoyl-L-leucinate monarch-merged.owl owl:Class CHEBI:134103 biolink:NamedThing N-arachidonoyl-L-leucinate monarch-merged.owl owl:Class CHEBI:134122 biolink:NamedThing N-oleoyl-L-glutamate(2-) monarch-merged.owl owl:Class CHEBI:136704 biolink:NamedThing N-propanoyl-L-methioninate monarch-merged.owl owl:Class CHEBI:149690 biolink:NamedThing N-(fatty acyl)-L-phenylalanine(1-) monarch-merged.owl owl:Class CHEBI:149737 biolink:NamedThing N-(fatty acyl)-L-methionine(1-) monarch-merged.owl owl:Class CHEBI:149740 biolink:NamedThing N-(fatty acyl)-L-leucine(1-) monarch-merged.owl owl:Class CHEBI:149741 biolink:NamedThing N-(fatty acyl)-L-isoleucine(1-) monarch-merged.owl owl:Class CHEBI:149743 biolink:NamedThing N-(fatty acyl)-L-glutamine(1-) monarch-merged.owl owl:Class CHEBI:176556 biolink:NamedThing N-(fatty acyl)-L-alaninate(1-) monarch-merged.owl owl:Class CHEBI:176557 biolink:NamedThing oxidized N-(fatty acyl)-L-alaninate(1-) monarch-merged.owl owl:Class CHEBI:132074 biolink:NamedThing N-[(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]alaninate monarch-merged.owl owl:Class CHEBI:132077 biolink:NamedThing N-[(15S)-hydroperoxy-(5Z,8Z,11Z,13E)-icosatetraenoyl]alaninate monarch-merged.owl owl:Class CHEBI:134121 biolink:NamedThing N-oleoyl-L-isoleucinate monarch-merged.owl owl:Class CHEBI:136183 biolink:NamedThing N-jasmonyl-L-alpha-amino acid anion monarch-merged.owl owl:Class CHEBI:138093 biolink:NamedThing N-acyl-aromatic L-alpha-amino-acid anion monarch-merged.owl owl:Class CHEBI:138374 biolink:NamedThing N-(12-hydroxyjasmonyl)-L-alpha-amino acid anion monarch-merged.owl owl:Class CHEBI:138463 biolink:NamedThing N-(12-oxojasmonyl)-L-alpha-amino acid anion monarch-merged.owl owl:Class CHEBI:138464 biolink:NamedThing N-(12-hydroxy-12-oxojasmonyl)-L-alpha-amino acid dianion monarch-merged.owl owl:Class CHEBI:21549 biolink:NamedThing N-acetyl-L-glutamate(1-) monarch-merged.owl owl:Class CHEBI:57702 biolink:NamedThing N-acetyl-L-phenylalaninate monarch-merged.owl owl:Class CHEBI:57722 biolink:NamedThing N(2),N(5)-dibenzoyl-L-ornithinate monarch-merged.owl owl:Class CHEBI:57772 biolink:NamedThing N-acetyl-L-histidinate monarch-merged.owl owl:Class CHEBI:57809 biolink:NamedThing N-formyl-L-methioninate monarch-merged.owl owl:Class CHEBI:58087 biolink:NamedThing N-(3-carboxylatopropionyl)-LL-2,6-diaminopimelate(2-) monarch-merged.owl owl:Class CHEBI:58154 biolink:NamedThing N-(2,3-dihydroxybenzoyl)-L-serinate monarch-merged.owl owl:Class CHEBI:58241 biolink:NamedThing N(2)-(3-carboxylatopropionyl)-L-arginine(1-) monarch-merged.owl owl:Class CHEBI:58270 biolink:NamedThing N-acetyl-L-leucinate monarch-merged.owl owl:Class CHEBI:58310 biolink:NamedThing N(2)-phenylacetyl-L-glutaminate monarch-merged.owl owl:Class CHEBI:58514 biolink:NamedThing N(2)-succinyl-L-ornithinate(1-) monarch-merged.owl owl:Class CHEBI:58558 biolink:NamedThing N-benzyloxycarbonyl-L-leucinate monarch-merged.owl owl:Class CHEBI:58765 biolink:NamedThing N-acetyl-L-citrullinate monarch-merged.owl owl:Class CHEBI:61511 biolink:NamedThing N-acetyl-L-2-aminoadipate semialdehyde monarch-merged.owl owl:Class CHEBI:66874 biolink:NamedThing carnosinate An N-acyl-L-alpha-amino acid anion that is the conjugate base of carnosine, obtained by deprotonation of the carboxy group. monarch-merged.owl N(alpha)-(beta-alanyl)-L-histidinate|(2S)-2-(beta-alanylamino)-3-(1H-imidazol-4-yl)propanoate|carnosinate anion|carnosinate(1-) -1 C9H13N4O3 InChI=1S/C9H14N4O3/c10-2-1-8(14)13-7(9(15)16)3-6-4-11-5-12-6/h4-5,7H,1-3,10H2,(H,11,12)(H,13,14)(H,15,16)/p-1/t7-/m0/s1 CQOVPNPJLQNMDC-ZETCQYMHSA-M 225.22450 225.09931 NCCC(=O)N[C@@H](Cc1c[nH]cn1)C([O-])=O Reaxys:6337985 chebi_ontology owl:Class CHEBI:67011 biolink:NamedThing folates An N-acyl-L-alpha-amino acid anion obtained by deprotonation of any folic acid. monarch-merged.owl folate anions|folate anion|folate chebi_ontology owl:Class CHEBI:76942 biolink:NamedThing beta-citrylglutamate(4-) monarch-merged.owl owl:Class CHEBI:87584 biolink:NamedThing N(2)-acyl-L-glutaminate monarch-merged.owl owl:Class CHEBI:87825 biolink:NamedThing N-acetylmethionine sulfone(1-) monarch-merged.owl owl:Class CHEBI:87827 biolink:NamedThing N-acetyl-L-methionine sulfoximine(1-) monarch-merged.owl owl:Class CHEBI:176568 biolink:NamedThing oxidized N-(fatty acyl)-gamma-aminobutyrate(1-) monarch-merged.owl owl:Class CHEBI:132083 biolink:NamedThing 18(S)-HEPE(1-) monarch-merged.owl owl:Class CHEBI:13209 biolink:NamedThing long-chain fatty acid ethyl ester monarch-merged.owl owl:Class CHEBI:18119 biolink:NamedThing ethyl 3-oxohexanoate monarch-merged.owl owl:Class CHEBI:23997 biolink:NamedThing ethyl 3-hydroxyhexanoate monarch-merged.owl owl:Class CHEBI:86055 biolink:NamedThing ethyl hexanoate monarch-merged.owl owl:Class CHEBI:132091 biolink:NamedThing (5S)-hydroperoxy-(18S)-hydroxy-(6E,8Z,11Z,14Z,16E)-icosapentaenoate monarch-merged.owl owl:Class CHEBI:132218 biolink:NamedThing 5(S)-hydroperoxy-18(R)-hydroxy-(6E,8Z,11Z,14Z,16E)-icosapentaenoate monarch-merged.owl owl:Class CHEBI:90826 biolink:NamedThing (5S)-hydroperoxy-18-hydroxy-EPE(1-) monarch-merged.owl owl:Class CHEBI:132093 biolink:NamedThing O(3)-(beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:64775 biolink:NamedThing organic anionic group An anionic group that contains carbon. monarch-merged.owl organic anionic groups chebi_ontology owl:Class CHEBI:132104 biolink:NamedThing O(3)-(N-acetyl-alpha-D-glucosaminyl-(1->4)-beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:132105 biolink:NamedThing O(3)-(N-acetyl-beta-D-galactosaminyl-(1->4)-beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:133063 biolink:NamedThing N(alpha)-acetyl-L-methionyl-L-aspartyl(1-) residue monarch-merged.owl owl:Class CHEBI:133360 biolink:NamedThing N(alpha)-acetyl-L-methionyl-L-glutamyl(1-) residue monarch-merged.owl owl:Class CHEBI:133968 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)(2-) residue monarch-merged.owl owl:Class CHEBI:133969 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)(2-) residue monarch-merged.owl owl:Class CHEBI:136412 biolink:NamedThing 5'-end 2'-deoxyribonucleotide(2-) residue monarch-merged.owl owl:Class CHEBI:136413 biolink:NamedThing adenosine-5'-diphospho-5'-(2'-deoxyribonucleotide) residue(2-) monarch-merged.owl owl:Class CHEBI:136414 biolink:NamedThing adenosine-5'-diphospho-5'-ribonucleotide-2'-deoxyribonucleotide residue(3-) monarch-merged.owl owl:Class CHEBI:136415 biolink:NamedThing 5'-phosphate ribonucleotide-(2'-deoxyribonucleotide) residue(3-) monarch-merged.owl owl:Class CHEBI:136418 biolink:NamedThing guanosine-5'-diphospho-5'-(2'-deoxyribonucleotide)(2-) residue monarch-merged.owl owl:Class CHEBI:136419 biolink:NamedThing 3'-end 2'-deoxyribonucleotide-3'-diphospho-5'-guanosine(3-) residue monarch-merged.owl owl:Class CHEBI:136420 biolink:NamedThing 3'-end 5'-phosphate-ribonucleotide(3-) residue monarch-merged.owl owl:Class CHEBI:136798 biolink:NamedThing 4-thiouridine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:136799 biolink:NamedThing 5-methyl-2-thiouridine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:136879 biolink:NamedThing 5-(carboxymethoxy)uridine 5'-phosphate(2-) residue monarch-merged.owl owl:Class CHEBI:136896 biolink:NamedThing 5'-(5'-triphosphoguanosine)-(purine-ribonucleotide)(3-) residue monarch-merged.owl owl:Class CHEBI:136977 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-(ribonucleotide)(3-) residue monarch-merged.owl owl:Class CHEBI:136978 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-(2'-O-methyl-ribonucleotide)(3-) residue monarch-merged.owl owl:Class CHEBI:136979 biolink:NamedThing isowyosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:137000 biolink:NamedThing C-terminal Xaa-Gly(1-) residue monarch-merged.owl owl:Class CHEBI:137003 biolink:NamedThing C-terminal Xaa-hydroxyglycino(1-) residue monarch-merged.owl owl:Class CHEBI:137356 biolink:NamedThing S-[5-carboxy-1-(5-O-phosphono-beta-D-ribofuranosyl)pyridinium-3-carbonyl]-L-cysteine(2-) residue monarch-merged.owl owl:Class CHEBI:137357 biolink:NamedThing S-[1-(5-O-phosphono-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridinium-3-carbonyl]-L-cysteine(2-) residue monarch-merged.owl owl:Class CHEBI:137387 biolink:NamedThing 4-O-methyl-dTMP(1-) residue monarch-merged.owl owl:Class CHEBI:137731 biolink:NamedThing 5-formyl-dCMP(1-) residue monarch-merged.owl owl:Class CHEBI:137732 biolink:NamedThing 5-carboxy-dCMP(2-) residue monarch-merged.owl owl:Class CHEBI:137923 biolink:NamedThing 5'-end ribonucleotide(1-) residue monarch-merged.owl owl:Class CHEBI:137933 biolink:NamedThing N(4)-methyl-dCMP(1-) residue monarch-merged.owl owl:Class CHEBI:137976 biolink:NamedThing S-acetyl-O-[2'-(5-phosphoribosyl)-3'-dephospho-CoA]-L-serine(3-) residue monarch-merged.owl owl:Class CHEBI:138075 biolink:NamedThing 5-formyl CMP(1-) residue monarch-merged.owl owl:Class CHEBI:138078 biolink:NamedThing 5'-(N(2),N(7)-dimethyl 5'-triphosphoguanosine)-(purine ribonucleotide)(2-) residue monarch-merged.owl owl:Class CHEBI:138079 biolink:NamedThing 5'-(N(2),N(2),N(7)-trimethyl 5'-triphosphoguanosine)-(purine ribonucleotide)(2-) residue monarch-merged.owl owl:Class CHEBI:138102 biolink:NamedThing 4-(ADP-D-ribosyl)-L-aspartyl(2-) residue monarch-merged.owl owl:Class CHEBI:138147 biolink:NamedThing 3'-end deoxyribonucleotide 3'-phosphate(3-) residue monarch-merged.owl owl:Class CHEBI:138148 biolink:NamedThing 3'-end deoxyribonucleotide(1-) residue monarch-merged.owl owl:Class CHEBI:138191 biolink:NamedThing 3'-end 3'-(N-acyl-L-alpha-aminoacyl)adenylyl(1-) residue monarch-merged.owl owl:Class CHEBI:138276 biolink:NamedThing 5'-end purine ribonucleoside 5'-diphosphate(3-) residue monarch-merged.owl owl:Class CHEBI:138278 biolink:NamedThing 5'-end GTP-ribonucleotide(5-) residue monarch-merged.owl owl:Class CHEBI:138280 biolink:NamedThing adenosine-5'-diphospho-5'-ribonucleotide(2-) residue monarch-merged.owl owl:Class CHEBI:138282 biolink:NamedThing 5'-end ribonucleotide(2-) residue monarch-merged.owl owl:Class CHEBI:138288 biolink:NamedThing 5'-end purine ribonucleotide 5'-triphosphate(4-) residue monarch-merged.owl owl:Class CHEBI:138309 biolink:NamedThing C-terminal L-alpha-amino-acid-L-tyrosinate residue monarch-merged.owl owl:Class CHEBI:139095 biolink:NamedThing 2'-deoxyribose 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:139518 biolink:NamedThing (5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine dimer(2-) residue monarch-merged.owl owl:Class CHEBI:139519 biolink:NamedThing thymidine dimer(2-) residue monarch-merged.owl owl:Class CHEBI:140284 biolink:NamedThing deoxyribonucleotide residue(1-) monarch-merged.owl owl:Class CHEBI:140495 biolink:NamedThing O(3)-(beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-2-O-phospho-xylosyl)-L-serine(3-) residue monarch-merged.owl owl:Class CHEBI:141855 biolink:NamedThing 5'-end NTP-ribonucleotide(5-) residue monarch-merged.owl owl:Class CHEBI:156461 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-ribonucleoside(2-) residue monarch-merged.owl owl:Class CHEBI:167609 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-ribonucleoside)(2-) residue monarch-merged.owl owl:Class CHEBI:167612 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-ribonucleoside)-(ribonucleotide)(3-) residue monarch-merged.owl owl:Class CHEBI:167614 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-ribonucleoside)-(2'-O-methyl-ribonucleotide)(3-) residue monarch-merged.owl owl:Class CHEBI:167616 biolink:NamedThing 5'-end ribonucleoside 5'-diphosphate(3-) residue monarch-merged.owl owl:Class CHEBI:167617 biolink:NamedThing 5'-(5'-triphosphoguanosine)-(ribonucleotide)(3-) residue monarch-merged.owl owl:Class CHEBI:167618 biolink:NamedThing 5'-end ribonucleotide 5'-triphosphate(4-) residue monarch-merged.owl owl:Class CHEBI:16901 biolink:NamedThing alpha-N-acetylneuraminyl-2,3-beta-D-galactosyl-1,3-N-acetyl-D-galactosaminyl group monarch-merged.owl owl:Class CHEBI:172880 biolink:NamedThing 5'-(N(2),N(7)-dimethyl 5'-triphosphoguanosine)-ribonucleoside(2-) residue monarch-merged.owl owl:Class CHEBI:47982 biolink:NamedThing pantetheine 4'-phosphate group monarch-merged.owl owl:Class CHEBI:51703 biolink:NamedThing glyoxylate group monarch-merged.owl owl:Class CHEBI:60525 biolink:NamedThing molybdenum cofactor(2-) Molybdenum cofactor MoCo protonated to pH 7.3. monarch-merged.owl MoCo -2 C10H11MoN5O8PS3 552.33000 553.85615 C1(NC(=NC2=C1N[C@]3(C4=C([C@H](O[C@]3(N2)[H])COP([O-])([O-])=O)S[Mo](S4)(=O)(O)S*)[H])N)=O PDB:3HBP|PDB:3HBQ|PMID:20356030|PDBeChem:MSS|PDB:3HBG chebi_ontology owl:Class CHEBI:64315 biolink:NamedThing 4-demethylwyosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:64898 biolink:NamedThing anionic amino-acid residue monarch-merged.owl owl:Class CHEBI:65261 biolink:NamedThing purine deoxyribonucleotide(1-) residue monarch-merged.owl owl:Class CHEBI:65262 biolink:NamedThing pyrimidine deoxyribonucleotide(1-) residue monarch-merged.owl owl:Class CHEBI:65263 biolink:NamedThing cyclobutadithymidine(2-) residue monarch-merged.owl owl:Class CHEBI:65314 biolink:NamedThing pseudouridine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:73542 biolink:NamedThing N(1)-methylguanosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:73543 biolink:NamedThing 7-[(3S)-3-amino-3-carboxypropyl]wyosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:73544 biolink:NamedThing wybutosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:73550 biolink:NamedThing 4-demethyl-7-(3-amino-3-carboxypropyl)wyosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:73603 biolink:NamedThing 7-(2-hydroxy-3-amino-3-carboxypropyl)wyosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74257 biolink:NamedThing FMN-L-threonine(2-) residue monarch-merged.owl owl:Class CHEBI:74415 biolink:NamedThing N(6)-dimethylallyladenine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74416 biolink:NamedThing 2-thio-N(6)-dimethylallyladenine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74417 biolink:NamedThing 2-methylthio-N(6)-dimethylallyladenine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74418 biolink:NamedThing N(6)-L-threonylcarbamoyladenine 5'-monophosphate(2-) residue monarch-merged.owl owl:Class CHEBI:74419 biolink:NamedThing 2-thio-N(6)-L-threonylcarbamoyladenine 5'-monophosphate(2-) residue monarch-merged.owl owl:Class CHEBI:74420 biolink:NamedThing 2-methylthio-N(6)-L-threonylcarbamoyladenine 5'-monophosphate(2-) residue monarch-merged.owl owl:Class CHEBI:74429 biolink:NamedThing 7-methylguanosine 5'-triphosphate(2-) group monarch-merged.owl owl:Class CHEBI:74432 biolink:NamedThing N(2),N(2),N(7)-trimethylguanosine 5'-triphosphate(2-) group monarch-merged.owl owl:Class CHEBI:74443 biolink:NamedThing 5,6-dihydrouridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74445 biolink:NamedThing 2'-O-methylguanosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74447 biolink:NamedThing 5-methyluridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74449 biolink:NamedThing N(6)-methyladenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74477 biolink:NamedThing 2'-O-methyladenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74478 biolink:NamedThing 2'-O-methyluridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74481 biolink:NamedThing N(2)-methylguanosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74483 biolink:NamedThing 5-methylcytidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74486 biolink:NamedThing N(3)-methylpseudouridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74491 biolink:NamedThing N(1)-methyladenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74493 biolink:NamedThing N(6),N(6)-dimethyladenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74495 biolink:NamedThing 2'-O-methylcytidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74497 biolink:NamedThing 2-methyladenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74502 biolink:NamedThing N(3)-methyluridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74506 biolink:NamedThing N(4)-methylcytidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74508 biolink:NamedThing 5-carboxymethylaminomethyluridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74511 biolink:NamedThing 5-carboxymethylaminomethyl-2'-O-methyluridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74513 biolink:NamedThing N(2),N(2)-dimethylguanosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74543 biolink:NamedThing 8-methyladenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74851 biolink:NamedThing 5-(2-methoxy-2-oxoethyl)uridine 5'-monophosphate residue(1-) monarch-merged.owl owl:Class CHEBI:74882 biolink:NamedThing 5-(carboxymethyl)uridine 5'-monophosphate(2-) residue monarch-merged.owl owl:Class CHEBI:74890 biolink:NamedThing N(1)-methylpseudouridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74894 biolink:NamedThing N(3)-methylcytidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74896 biolink:NamedThing 3'-end ribonucleotide(1-) residue monarch-merged.owl owl:Class CHEBI:74898 biolink:NamedThing 3'-end 2'-O-methylribonucleotide(1-) residue monarch-merged.owl owl:Class CHEBI:74900 biolink:NamedThing N(4)-acetylcytidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:75191 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-6-O-phosphonato-alpha-D-mannosyl group(2-) monarch-merged.owl owl:Class CHEBI:78515 biolink:NamedThing 3'-(L-asparaginyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78516 biolink:NamedThing 3'-(L-aspartate)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78520 biolink:NamedThing 3'-(L-glutamate)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78527 biolink:NamedThing 3'-(L-histidyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78531 biolink:NamedThing 3'-(L-phenylalanyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78533 biolink:NamedThing 3'-(L-seryl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78534 biolink:NamedThing 3'-(L-threonyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78535 biolink:NamedThing 3'-(L-tryptophyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78536 biolink:NamedThing 3'-(L-tyrosyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78551 biolink:NamedThing 3'-(O-phosphonato-L-seryl)adenylyl(2-) group monarch-merged.owl owl:Class CHEBI:78573 biolink:NamedThing 3'-(L-selenocysteinyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78612 biolink:NamedThing C-terminal L-Cys-L-Leu-L-Val-L-Cys(1-) residue monarch-merged.owl owl:Class CHEBI:78723 biolink:NamedThing 3'-(D-tyrosyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:78844 biolink:NamedThing 3'-(N-formyl-L-methionyl)adenylyl(1-) group monarch-merged.owl owl:Class CHEBI:79026 biolink:NamedThing molybdenum cofactor(3-) An organic anionic group derived from molybdenum cofactor(3-). It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.). monarch-merged.owl molybdenum cofactor -3 C10H10MoN5O8PS3 551.33000 552.84832 Nc1nc2N[C@@H]3O[C@H](COP([O-])([O-])=O)C4=C(S[Mo]([O-])(=O)(S-*)S4)[C@@H]3Nc2c(=O)[nH]1 chebi_ontology owl:Class CHEBI:82683 biolink:NamedThing O-[2'-(5-phosphoribosyl)-3'-dephospho-CoA]-L-serine(3-) residue monarch-merged.owl owl:Class CHEBI:82697 biolink:NamedThing N-(ADP-D-ribosyl)diphthamide(1-) residue monarch-merged.owl owl:Class CHEBI:82850 biolink:NamedThing 7-cyano-7-carbaguanine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:82852 biolink:NamedThing inosine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:82883 biolink:NamedThing nucleotide 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:82930 biolink:NamedThing 3-(3-amino-3-carboxypropyl)uridine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:83062 biolink:NamedThing 3'-end ribonucleotide 3'-phosphate(3-) residue monarch-merged.owl owl:Class CHEBI:83064 biolink:NamedThing 3'-end ribonucleotide 2',3'-cyclic phosphate(2-) residue monarch-merged.owl owl:Class CHEBI:83071 biolink:NamedThing tRNA 3'-terminal nucleotidyl-cytidyl-cytidyl-adenosine(4-) residue monarch-merged.owl owl:Class CHEBI:83145 biolink:NamedThing carboxybiotinyl-L-lysine(1-) residue monarch-merged.owl owl:Class CHEBI:83739 biolink:NamedThing ferroheme c di-L-cysteine(2-) residue monarch-merged.owl owl:Class CHEBI:83960 biolink:NamedThing N(omega)-alpha-(ADP-D-ribosyl)-L-arginine(1-) residue monarch-merged.owl owl:Class CHEBI:85027 biolink:NamedThing 2'-phospho-nucleotide 5'-phosphate(3-) residue monarch-merged.owl owl:Class CHEBI:85279 biolink:NamedThing S-3-[(2R)-phycoerythrobilin]-L-cysteine(2-) residue monarch-merged.owl owl:Class CHEBI:85280 biolink:NamedThing S-3-[(2R)-phycocyanobilin]-L-cysteine(2-) residue monarch-merged.owl owl:Class CHEBI:85288 biolink:NamedThing S-3-[(2R)-phycoviolobilin]-L-cysteine(2-) residue monarch-merged.owl owl:Class CHEBI:85305 biolink:NamedThing S-3-[(2R)-phycourobilin]-L-cysteine(2-) residue monarch-merged.owl owl:Class CHEBI:85448 biolink:NamedThing 6-O-methyl dGMP(1-) residue monarch-merged.owl owl:Class CHEBI:85643 biolink:NamedThing 3'-terminal pUpU(2-) residue monarch-merged.owl owl:Class CHEBI:85644 biolink:NamedThing UMP 2',3'-cyclic phosphate(2-) residue monarch-merged.owl owl:Class CHEBI:85958 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-2'-O-methyladenosine(2-) residue monarch-merged.owl owl:Class CHEBI:85959 biolink:NamedThing 5'-(N(7)-methyl 5'-triphosphoguanosine)-N(6)-methyl-2'-O-methyladenosine(2-) residue monarch-merged.owl owl:Class CHEBI:87170 biolink:NamedThing 2-thiouridine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:87171 biolink:NamedThing 5-taurinomethyl-2-thiouridine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:87172 biolink:NamedThing 5-taurinomethyluridine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:90616 biolink:NamedThing N(6)-methyl-2'-deoxyadenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:90618 biolink:NamedThing C-terminal Gly-Gly-AMP(1-) group monarch-merged.owl owl:Class CHEBI:90675 biolink:NamedThing ribonucleotide residue(1-) monarch-merged.owl owl:Class CHEBI:90676 biolink:NamedThing 2'-O-methylribonucleotide(1-) residue monarch-merged.owl owl:Class CHEBI:90778 biolink:NamedThing C-terminal Gly-Gly(1-) residue monarch-merged.owl owl:Class CHEBI:132114 biolink:NamedThing UDP-N-acetyl-alpha-D-galactosamine 4-sulfate(3-) monarch-merged.owl owl:Class CHEBI:132115 biolink:NamedThing UDP-N-acetyl-alpha-D-galactosamine 4,6-bissulfate(4-) monarch-merged.owl owl:Class CHEBI:132116 biolink:NamedThing 2-hydroxyisobutanoyl-CoA monarch-merged.owl owl:Class CHEBI:15501 biolink:NamedThing 5-hydroxypentanoyl-CoA monarch-merged.owl owl:Class CHEBI:15529 biolink:NamedThing lactoyl-CoA monarch-merged.owl owl:Class CHEBI:27855 biolink:NamedThing L-erythro-3-methylmalyl-CoA monarch-merged.owl owl:Class CHEBI:28522 biolink:NamedThing 4-hydroxybutyryl-CoA monarch-merged.owl owl:Class CHEBI:28578 biolink:NamedThing 2-hydroxyglutaryl-CoA monarch-merged.owl owl:Class CHEBI:49173 biolink:NamedThing 2-hydroxy-3-methylacyl-CoA monarch-merged.owl owl:Class CHEBI:49261 biolink:NamedThing 3-hydroxycyclohexa-1,5-diene-1-carbonyl-CoA monarch-merged.owl owl:Class CHEBI:61902 biolink:NamedThing hydroxy fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:65260 biolink:NamedThing 3-hydroxyacyl-CoA monarch-merged.owl owl:Class CHEBI:132117 biolink:NamedThing indolmycenic acid monarch-merged.owl owl:Class CHEBI:16373 biolink:NamedThing (S)-3-(imidazol-5-yl)lactic acid monarch-merged.owl owl:Class CHEBI:18129 biolink:NamedThing (S)-2-hydroxyoctadecanoic acid monarch-merged.owl owl:Class CHEBI:32800 biolink:NamedThing (S)-mandelic acid monarch-merged.owl owl:Class CHEBI:32802 biolink:NamedThing (S)-4-hydroxymandelic acid monarch-merged.owl owl:Class CHEBI:422 biolink:NamedThing (S)-lactic acid An optically active form of lactic acid having (S)-configuration. monarch-merged.owl L-(+)-lactic acid|(2S)-2-hydroxypropanoic acid|L-Lactic acid|(S)-2-hydroxypropanoic acid|(S)-2-hydroxypropionic acid|L-Milchsaeure|L-(+)-alpha-hydroxypropionic acid|(S)-(+)-lactic acid|(+)-lactic acid 0 C3H6O3 InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/t2-/m0/s1 JVTAAEKCZFNVCJ-REOHCLBHSA-N 90.07794 90.03169 C[C@H](O)C(O)=O PMID:22424924|HMDB:HMDB0000190|Beilstein:1720251|PMID:22578598|Gmelin:362717|PMID:22443585|PMID:22367529|Reaxys:1720251|PMID:22461545|KEGG:C00186|PMID:21996028|KNApSAcK:C00001191|CAS:79-33-4|PMID:22336740|PMID:22534372|Wikipedia:Lactic_Acid|PMID:22538963 chebi_ontology owl:Class CHEBI:43065 biolink:NamedThing (S)-3-phenyllactic acid monarch-merged.owl owl:Class CHEBI:44510 biolink:NamedThing (S)-2-hydroxy-4-methylpentanoic acid monarch-merged.owl owl:Class CHEBI:50613 biolink:NamedThing (S)-2-hydroxybutyric acid monarch-merged.owl owl:Class CHEBI:74324 biolink:NamedThing L-glyceric acid monarch-merged.owl owl:Class CHEBI:75977 biolink:NamedThing (S)-2-hydroxyhexadecanoic acid monarch-merged.owl owl:Class CHEBI:85937 biolink:NamedThing (2S)-2-hydroxytetradecanoic acid monarch-merged.owl owl:Class CHEBI:24810 biolink:NamedThing indol-3-yl carboxylic acid Any indolyl carboxylic acid carrying an indol-3-yl or substituted indol-3-yl group. monarch-merged.owl indol-3-yl carboxylic acids chebi_ontology owl:Class CHEBI:24803 biolink:NamedThing indole-3-acetic acids An indol-3-yl carboxylic acid in which the carboxylic acid specified is acetic acid. monarch-merged.owl chebi_ontology owl:Class CHEBI:24809 biolink:NamedThing indole-3-carboxylic acid monarch-merged.owl owl:Class CHEBI:24813 biolink:NamedThing 3-(indol-3-yl)lactic acid monarch-merged.owl owl:Class CHEBI:33070 biolink:NamedThing indole-3-butyric acid monarch-merged.owl owl:Class CHEBI:17522 biolink:NamedThing alditol A carbohydrate that is an acyclic polyol having the general formula HOCH2[CH(OH)]nCH2OH (formally derivable from an aldose by reduction of the carbonyl group). monarch-merged.owl Sugar alcohol|Alditol|alditol|alditols|Glycitol 0 (CH2O)nC2H6O2 KEGG:C00717|Wikipedia:Glycerin CHEBI:13754|CHEBI:2556|CHEBI:22298 chebi_ontology owl:Class CHEBI:34002 biolink:NamedThing (3S)-3-Hydroxyadipyl-CoA monarch-merged.owl owl:Class CHEBI:37205 biolink:NamedThing pentol monarch-merged.owl owl:Class CHEBI:37206 biolink:NamedThing hexol A polyol that contains 6 hydroxy groups. monarch-merged.owl hexol|hexols chebi_ontology owl:Class CHEBI:132123 biolink:NamedThing 1,2-benzoquinones monarch-merged.owl owl:Class CHEBI:22729 biolink:NamedThing benzoquinones Any quinone resulting from the formal oxidation of catechol, hydroquinone, or their C-substituted derivatives. monarch-merged.owl chebi_ontology owl:Class CHEBI:132124 biolink:NamedThing 1,4-benzoquinones Any member of the class of benzoquinones that is 1,4-benzoquinone or its C-substituted derivatives. monarch-merged.owl p-benzoquinones|a quinone|para-benzoquinones 0 C6O2R4 104.063 103.98983 O=C1C(*)=C(*)C(=O)C(*)=C1* chebi_ontology owl:Class CHEBI:39439 biolink:NamedThing benzoquinone monarch-merged.owl owl:Class CHEBI:25622 biolink:NamedThing orthoquinones monarch-merged.owl owl:Class CHEBI:15342 biolink:NamedThing acenaphthoquinone monarch-merged.owl owl:Class CHEBI:17036 biolink:NamedThing dibenzo[1,4]dioxine-2,3-dione monarch-merged.owl owl:Class CHEBI:18315 biolink:NamedThing pyrroloquinoline quinone monarch-merged.owl owl:Class CHEBI:27406 biolink:NamedThing indole-5,6-quinone monarch-merged.owl owl:Class CHEBI:49081 biolink:NamedThing 6-(2-amino-2-carboxyethyl)-7,8-dioxo-1,2,3,4,7,8-hexahydroquinoline-2,4-dicarboxylic acid monarch-merged.owl owl:Class CHEBI:49108 biolink:NamedThing dopachrome monarch-merged.owl owl:Class CHEBI:25830 biolink:NamedThing p-quinones A quinone in which the two oxo groups of the quinone are located para to each other on the 6-membered quinonoid ring. monarch-merged.owl para-quinones|p-quinone chebi_ontology owl:Class CHEBI:132142 biolink:NamedThing 1,4-naphthoquinones A naphthoquinone in which the oxo groups of the quinone moiety are at positions 1 and 4 of the parent naphthalene ring. monarch-merged.owl chebi_ontology owl:Class CHEBI:25357 biolink:NamedThing mitomycin monarch-merged.owl owl:Class CHEBI:26255 biolink:NamedThing prenylquinone A quinone substituted by a polyprenyl-derived side-chain. Prenylquinones occur in all living cells. Due to their amphiphilic character, they are mainly located in biological membranes where they function as electron and proton carriers in the photosynthetic and respiratory electron transport chains. Some prenylquinones also perform more specialised roles sucy as antioxidants and enzyme cofactors. Prenylquinones are classified according to ring structure: the main classes are menaquinones, phylloquinones, ubiquinones and plastoquinones. monarch-merged.owl polyprenylquinone|polyprenylquinones|prenylquinones PMID:3985624|PMID:21844348|PMID:19928587|PMID:22371323|PMID:21777468 CHEBI:72751 chebi_ontology owl:Class CHEBI:28192 biolink:NamedThing 2-demethylmenaquinone monarch-merged.owl owl:Class CHEBI:31057 biolink:NamedThing 13-deoxydaunorubicin monarch-merged.owl owl:Class CHEBI:31058 biolink:NamedThing (13R)-13-dihydrocarminomycin monarch-merged.owl owl:Class CHEBI:31059 biolink:NamedThing 13-dihydrodaunorubicin monarch-merged.owl owl:Class CHEBI:31359 biolink:NamedThing carminomycin monarch-merged.owl owl:Class CHEBI:41977 biolink:NamedThing daunorubicin monarch-merged.owl owl:Class CHEBI:5533 biolink:NamedThing granaticin monarch-merged.owl owl:Class CHEBI:71634 biolink:NamedThing hydroxyversicolorone monarch-merged.owl owl:Class CHEBI:71654 biolink:NamedThing versicolorone monarch-merged.owl owl:Class CHEBI:72674 biolink:NamedThing versicolorin B monarch-merged.owl owl:Class CHEBI:72676 biolink:NamedThing versicolorin A monarch-merged.owl owl:Class CHEBI:73387 biolink:NamedThing caldariellaquinone monarch-merged.owl owl:Class CHEBI:33752 biolink:NamedThing hexonic acid Any aldonic acid formed by oxidising the aldehyde group of an aldohexose to a carboxylic acid group. monarch-merged.owl hexonic acids|aldohexonic acids|hexonic acid chebi_ontology owl:Class CHEBI:137932 biolink:NamedThing 5-dehydro-L-gluconic acid monarch-merged.owl owl:Class CHEBI:16138 biolink:NamedThing 2-deoxy-D-gluconic acid monarch-merged.owl owl:Class CHEBI:21054 biolink:NamedThing mannonic acid monarch-merged.owl owl:Class CHEBI:21337 biolink:NamedThing idonic acid monarch-merged.owl owl:Class CHEBI:21376 biolink:NamedThing rhamnonic acid monarch-merged.owl owl:Class CHEBI:24116 biolink:NamedThing fuconic acid monarch-merged.owl owl:Class CHEBI:24149 biolink:NamedThing galactonic acid A hexonic acid that has been found to increase in red blood cells of galactosemic patients. monarch-merged.owl 0 C6H12O7 196.156 196.05830 PMID:14680973 chebi_ontology owl:Class CHEBI:24266 biolink:NamedThing gluconic acid monarch-merged.owl 0 C6H11O7 195.148 195.05048 DrugBank:DB04304 chebi_ontology owl:Class CHEBI:24462 biolink:NamedThing gulonic acid monarch-merged.owl owl:Class CHEBI:33532 biolink:NamedThing altronic acid monarch-merged.owl owl:Class CHEBI:33772 biolink:NamedThing gluconic acid derivative monarch-merged.owl owl:Class CHEBI:132127 biolink:NamedThing hepoxilin A3(1-) monarch-merged.owl owl:Class CHEBI:132201 biolink:NamedThing 11(S)-hydroxy-14(S),15(S)-hepoxilin A3(1-) monarch-merged.owl owl:Class CHEBI:78084 biolink:NamedThing hepoxilin B3(1-) monarch-merged.owl owl:Class CHEBI:26660 biolink:NamedThing sesterterpenoid monarch-merged.owl owl:Class CHEBI:138046 biolink:NamedThing sesterfisherol monarch-merged.owl owl:Class CHEBI:35952 biolink:NamedThing 5-oxo monocarboxylic acid monarch-merged.owl owl:Class CHEBI:15757 biolink:NamedThing (S)-4-amino-5-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:17646 biolink:NamedThing mevaldic acid monarch-merged.owl owl:Class CHEBI:1921 biolink:NamedThing 4-oxocyclohexanecarboxylic acid monarch-merged.owl owl:Class CHEBI:35969 biolink:NamedThing 3-hydroxy monocarboxylic acid A hydroxy monocarboxylic acid that has a hydroxy group beta to the carboxy group. monarch-merged.owl 3-hydroxy monocarboxylic acids|beta-hydroxy carboxylic acids|beta-hydroxy acid|beta-hydroxy carboxylic acid|beta-hydroxy acids|3-hydroxy acid chebi_ontology owl:Class CHEBI:16080 biolink:NamedThing gamma-amino-beta-hydroxybutyric acid A gamma-amino acid comprising 4-aminobutyric acid having a 2-hydroxy substituent. monarch-merged.owl 3-hydroxy-GABA|4-amino-3-hydroxybutanoic acid|4-amino-3-hydroxybutyric acid|GABOB|4-Amino-3-hydroxybutanoic acid|gamma-Amino-beta-hydroxybutyric acid 0 C4H9NO3 InChI=1S/C4H9NO3/c5-2-3(6)1-4(7)8/h3,6H,1-2,5H2,(H,7,8) YQGDEPYYFWUPGO-UHFFFAOYSA-N 119.11920 119.05824 NCC(O)CC(O)=O Drug_Central:1263|Beilstein:1721708|KEGG:D00174|KEGG:C03678|CAS:352-21-6|Beilstein:1752568 CHEBI:20311|CHEBI:1780 chebi_ontology owl:Class CHEBI:17413 biolink:NamedThing 2-(hydroxymethyl)-4-oxobutanoic acid monarch-merged.owl owl:Class CHEBI:18064 biolink:NamedThing 3-hydroxyisobutyric acid monarch-merged.owl owl:Class CHEBI:30765 biolink:NamedThing tropic acid monarch-merged.owl owl:Class CHEBI:37035 biolink:NamedThing 3-hydroxyhexanoic acid monarch-merged.owl owl:Class CHEBI:37051 biolink:NamedThing 3-hydroxy-2-methylbutanoic acid monarch-merged.owl owl:Class CHEBI:37084 biolink:NamedThing 3-hydroxyisovaleric acid monarch-merged.owl owl:Class CHEBI:37098 biolink:NamedThing 3-hydroxyoctanoic acid monarch-merged.owl owl:Class CHEBI:37276 biolink:NamedThing (1-hydroxycyclohexyl)acetic acid monarch-merged.owl owl:Class CHEBI:37371 biolink:NamedThing (S)-3-hydroxydecanoic acid monarch-merged.owl owl:Class CHEBI:52348 biolink:NamedThing 3-hydroxydocosanoic acid monarch-merged.owl owl:Class CHEBI:138969 biolink:NamedThing ent-cassa-12,15-dien-2-one monarch-merged.owl owl:Class CHEBI:23446 biolink:NamedThing cyclic monoterpene ketone monarch-merged.owl owl:Class CHEBI:50040 biolink:NamedThing thujone monarch-merged.owl owl:Class CHEBI:52464 biolink:NamedThing jasmonate ester monarch-merged.owl owl:Class CHEBI:63459 biolink:NamedThing shionone monarch-merged.owl owl:Class CHEBI:132129 biolink:NamedThing (8S)-hepoxilin A3(1-) monarch-merged.owl owl:Class CHEBI:25481 biolink:NamedThing naphthoquinone A polycyclic aromatic ketone metabolite of naphthalene. monarch-merged.owl naphthoquinones chebi_ontology owl:Class CHEBI:48129 biolink:NamedThing benzoisochromanequinone monarch-merged.owl owl:Class CHEBI:51285 biolink:NamedThing acenoquinone monarch-merged.owl owl:Class CHEBI:23778 biolink:NamedThing dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:140242 biolink:NamedThing 3-bromo-4,5-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:16068 biolink:NamedThing 2-(3,4-dihydroxybenzoyloxy)-4,6-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:16725 biolink:NamedThing 2,3-dihydroxy-p-cumic acid monarch-merged.owl owl:Class CHEBI:17189 biolink:NamedThing 2,5-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:18026 biolink:NamedThing 2,3-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:18081 biolink:NamedThing 3-hexaprenyl-4,5-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:68465 biolink:NamedThing 2,6-dihydroxybenzoic acid monarch-merged.owl owl:Class CHEBI:84446 biolink:NamedThing 3,4-dihydroxy-5-all-trans-heptaprenylbenzoic acid monarch-merged.owl owl:Class CHEBI:84451 biolink:NamedThing 3,4-dihydroxy-5-all-trans-octaprenylbenzoic acid monarch-merged.owl owl:Class CHEBI:132155 biolink:NamedThing hydroxynaphthoquinone monarch-merged.owl owl:Class CHEBI:26127 biolink:NamedThing phytylnaphthoquinone monarch-merged.owl owl:Class CHEBI:26254 biolink:NamedThing prenylnaphthoquinone monarch-merged.owl owl:Class CHEBI:132149 biolink:NamedThing prostaglandin D3(1-) monarch-merged.owl owl:Class CHEBI:59326 biolink:NamedThing prostaglandin carboxylic acid anion A prostanoid anion obtained by deprotonation of the carboxy group of any prostaglandin. monarch-merged.owl prostaglandin carboxylic acid anions chebi_ontology owl:Class CHEBI:133084 biolink:NamedThing prostaglandin G1(1-) monarch-merged.owl owl:Class CHEBI:133132 biolink:NamedThing prostaglandin E3(1-) monarch-merged.owl owl:Class CHEBI:133133 biolink:NamedThing prostaglandin G3(1-) monarch-merged.owl owl:Class CHEBI:133134 biolink:NamedThing prostaglandin H3(1-) monarch-merged.owl owl:Class CHEBI:133370 biolink:NamedThing prostaglandin A2(1-) monarch-merged.owl owl:Class CHEBI:133374 biolink:NamedThing 13,14-dihydro-15-keto-PGF2alpha(1-) monarch-merged.owl owl:Class CHEBI:133391 biolink:NamedThing prostaglandin B2(1-) monarch-merged.owl owl:Class CHEBI:133392 biolink:NamedThing prostaglandin C2(1-) monarch-merged.owl owl:Class CHEBI:133396 biolink:NamedThing prostaglandin J2(1-) monarch-merged.owl owl:Class CHEBI:133408 biolink:NamedThing 13,14-dihydro-15-oxoprostaglandin E1(1-) monarch-merged.owl owl:Class CHEBI:133409 biolink:NamedThing 15-oxoprostaglandin F2alpha(1-) monarch-merged.owl owl:Class CHEBI:133411 biolink:NamedThing 13,14-dihydro-15-keto-PGF1alpha(1-) monarch-merged.owl owl:Class CHEBI:133424 biolink:NamedThing 13,14-dihydro-Delta(12)-prostaglandin J2(1-) monarch-merged.owl owl:Class CHEBI:136653 biolink:NamedThing 20-hydroxyprostaglandin E2(1-) monarch-merged.owl owl:Class CHEBI:136661 biolink:NamedThing 20-hydroxyprostaglandin E1(1-) monarch-merged.owl owl:Class CHEBI:136663 biolink:NamedThing 20-hydroxyprostaglandin A1(1-) monarch-merged.owl owl:Class CHEBI:137987 biolink:NamedThing 19-hydroxyprostaglandin I2(1-) monarch-merged.owl owl:Class CHEBI:57397 biolink:NamedThing prostaglandin E1(1-) monarch-merged.owl owl:Class CHEBI:57398 biolink:NamedThing prostaglandin A1(1-) monarch-merged.owl owl:Class CHEBI:57399 biolink:NamedThing prostaglandin C1(1-) monarch-merged.owl owl:Class CHEBI:57400 biolink:NamedThing 15-dehydro-prostaglandin E2(1-) monarch-merged.owl owl:Class CHEBI:57401 biolink:NamedThing 15-dehydro-prostaglandin E1(1-) monarch-merged.owl owl:Class CHEBI:57402 biolink:NamedThing 13,14-dihydro-15-oxo-prostaglandin E2(1-) monarch-merged.owl owl:Class CHEBI:57403 biolink:NamedThing prostaglandin I2(1-) monarch-merged.owl owl:Class CHEBI:57404 biolink:NamedThing prostaglandin F2alpha(1-) A prostaglandin carboxylic acid anion that is the conjugate base of prostaglandin F2alpha, obtained by deprotonation of the carboxy group; major species at pH 7.3. monarch-merged.owl (5Z,13E,15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dien-1-oate|prostaglandin F2alpha|prostaglandin F2alpha anion -1 C20H33O5 InChI=1S/C20H34O5/c1-2-3-6-9-15(21)12-13-17-16(18(22)14-19(17)23)10-7-4-5-8-11-20(24)25/h4,7,12-13,15-19,21-23H,2-3,5-6,8-11,14H2,1H3,(H,24,25)/p-1/b7-4-,13-12+/t15-,16+,17+,18-,19+/m0/s1 PXGPLTODNUVGFL-YNNPMVKQSA-M 353.474 353.23335 [C@@H]1(/C=C/[C@@H](O)CCCCC)[C@H]([C@H](C[C@H]1O)O)C/C=C\CCCC([O-])=O Beilstein:6438364|MetaCyc:5Z13E-15S-9-ALPHA11-ALPHA15-TRIHY chebi_ontology owl:Class CHEBI:57405 biolink:NamedThing prostaglandin H2(1-) monarch-merged.owl owl:Class CHEBI:57406 biolink:NamedThing prostaglandin D2(1-) monarch-merged.owl owl:Class CHEBI:57407 biolink:NamedThing 15-dehydro-prostaglandin I2(1-) monarch-merged.owl owl:Class CHEBI:57408 biolink:NamedThing 15-dehydro-prostaglandin D2(1-) monarch-merged.owl owl:Class CHEBI:606564 biolink:NamedThing prostaglandin E2(1-) The conjugate base of prostaglandin E2; major species at pH 7.3. monarch-merged.owl prostaglandin E2|(5Z,13E,15S)-11alpha,15-dihydroxy-9-oxoprosta-5,13-dien-1-oate|prostaglandin E2 anion -1 C20H31O5 InChI=1S/C20H32O5/c1-2-3-6-9-15(21)12-13-17-16(18(22)14-19(17)23)10-7-4-5-8-11-20(24)25/h4,7,12-13,15-17,19,21,23H,2-3,5-6,8-11,14H2,1H3,(H,24,25)/p-1/b7-4-,13-12+/t15-,16+,17+,19+/m0/s1 XEYBRNLFEZDVAW-ARSRFYASSA-M 351.45710 351.21770 CCCCC[C@H](O)\C=C\[C@H]1[C@H](O)CC(=O)[C@@H]1C\C=C/CCCC([O-])=O Beilstein:8364130|MetaCyc:5Z13E-15S-1115-DIHYDROXY-9-OXOPROS chebi_ontology owl:Class CHEBI:79010 biolink:NamedThing prostaglandin D1(1-) monarch-merged.owl owl:Class CHEBI:79072 biolink:NamedThing 15-ketoprostaglandin F1alpha(1-) monarch-merged.owl owl:Class CHEBI:82629 biolink:NamedThing prostaglandin G2(1-) monarch-merged.owl owl:Class CHEBI:85072 biolink:NamedThing 15-dehydroprostaglandin A1(1-) monarch-merged.owl owl:Class CHEBI:85173 biolink:NamedThing 11-epi-prostaglandin F2alpha(1-) monarch-merged.owl owl:Class CHEBI:85236 biolink:NamedThing 15-deoxy-Delta(12,14)-prostaglandin J2(1-) monarch-merged.owl owl:Class CHEBI:90793 biolink:NamedThing prostaglandin H1(1-) monarch-merged.owl owl:Class CHEBI:90797 biolink:NamedThing 19-hydroxyprostaglandin H2(1-) monarch-merged.owl owl:Class CHEBI:90801 biolink:NamedThing 19-hydroxyprostaglandin H1(1-) monarch-merged.owl owl:Class CHEBI:132153 biolink:NamedThing hyaluronate A carbohydrate acid derivative anion obtained by deprotonation of the carboxy groups of hyaluronic acid; major species at pH 7.3. monarch-merged.owl hyaluronate polyanion|hyaluronan -1 (C14H20NO11)n.H2O chebi_ontology owl:Class CHEBI:132154 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->4)-[hyaluronate] monarch-merged.owl owl:Class CHEBI:132367 biolink:NamedThing beta-D-glucuronoside(1-) monarch-merged.owl owl:Class CHEBI:136545 biolink:NamedThing alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminide(1-) monarch-merged.owl owl:Class CHEBI:136589 biolink:NamedThing N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide(1-) monarch-merged.owl owl:Class CHEBI:136637 biolink:NamedThing steroid glucosiduronic acid anion monarch-merged.owl owl:Class CHEBI:137942 biolink:NamedThing alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-galactosaminide(2-) monarch-merged.owl owl:Class CHEBI:139186 biolink:NamedThing retinoid glucosiduronic acid anion monarch-merged.owl owl:Class CHEBI:140336 biolink:NamedThing glucuronoxylan 4-O-methyl-D-glucuronate polyanion monarch-merged.owl owl:Class CHEBI:146021 biolink:NamedThing N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-D-glucosaminide(1-) monarch-merged.owl owl:Class CHEBI:149714 biolink:NamedThing N-acetyl-alpha-neuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[N-acetyl-alpha-neuraminosyl-(2->6)]-N-acetyl-D-glucosaminide(1-) monarch-merged.owl owl:Class CHEBI:176431 biolink:NamedThing an alpha-Kdo-(2->4)-alpha-Kdo-(2->6)-lipid A(6-) monarch-merged.owl owl:Class CHEBI:33985 biolink:NamedThing muramates monarch-merged.owl owl:Class CHEBI:57815 biolink:NamedThing luteolin 7-O-[(beta-D-glucosiduronate)-(1->2)-(beta-D-glucosiduronate)] monarch-merged.owl owl:Class CHEBI:58899 biolink:NamedThing alpha-D-glucosiduronate monarch-merged.owl owl:Class CHEBI:60055 biolink:NamedThing dermatan 6'-sulfate anion monarch-merged.owl owl:Class CHEBI:60059 biolink:NamedThing dermatan anion A carbohydrate acid derivative anion obtained from dermatan by deprotonation of the carboxylic acid groups of the repeating units; the major species at pH 7.3. monarch-merged.owl dermatan polyanion|dermatan H2O(C14H20NO11)n CHEBI:58701 chebi_ontology owl:Class CHEBI:62196 biolink:NamedThing polysaccharide acid oxoanion monarch-merged.owl owl:Class CHEBI:63561 biolink:NamedThing ketoaldonate derivative A carbohydrate acid derivative anion that is formally obtained from a ketoaldonate. monarch-merged.owl ketoaldonate derivatives chebi_ontology owl:Class CHEBI:64848 biolink:NamedThing N-acetyl-beta-muramate(1-) monarch-merged.owl owl:Class CHEBI:64870 biolink:NamedThing (S)-malyl N-acetyl-alpha-D-glucosaminide(2-) monarch-merged.owl owl:Class CHEBI:64876 biolink:NamedThing bacillithiol(1-) monarch-merged.owl owl:Class CHEBI:66982 biolink:NamedThing mycophenolic acid O-acyl-glucuronide(1-) monarch-merged.owl owl:Class CHEBI:68669 biolink:NamedThing N,N-diacetyllegionaminate monarch-merged.owl owl:Class CHEBI:71399 biolink:NamedThing (beta-L-Ara4N)2-(KDO)2-lipid A(2-) monarch-merged.owl owl:Class CHEBI:72649 biolink:NamedThing cyanidin 3-O-[6-O-(4-O-beta-D-glucosyl-p-coumaroyl)-2-O-(2-O-sinapoyl-beta-D-xylosyl)-beta-D-glucosyl]-5-O-(6-O-malonyl-beta-D-glucoside)(1-) monarch-merged.owl owl:Class CHEBI:72650 biolink:NamedThing cyanidin 3-O-[6-O-(4-O-beta-D-glucosyl-p-coumaroyl)-2-O-(beta-D-xylosyl)-beta-D-glucosyl]-5-O-(6-O-malonyl-beta-D-glucoside)(1-) monarch-merged.owl owl:Class CHEBI:73110 biolink:NamedThing ganglioside GM1(1-) monarch-merged.owl owl:Class CHEBI:73194 biolink:NamedThing 17alpha-(N-acetyl-alpha-D-glucosaminyl)estradiol 3-glucosiduronate monarch-merged.owl owl:Class CHEBI:77671 biolink:NamedThing luteolin 7-O-beta-D-glucosiduronate(2-) monarch-merged.owl owl:Class CHEBI:77989 biolink:NamedThing luteolin 7-O-[(beta-D-glucosiduronate)-(1->2)-(beta-D-glucosiduronate)](3-) monarch-merged.owl owl:Class CHEBI:79346 biolink:NamedThing anionic ganglioside Any carbohydrate acid derivative anion obtained by deprotonation of at least one of the neuraminosyl carboxy groups of a ganglioside. monarch-merged.owl ganglioside anion chebi_ontology owl:Class CHEBI:83411 biolink:NamedThing beta-D-glucosiduronate monarch-merged.owl owl:Class CHEBI:139252 biolink:NamedThing [8)-alpha-Neu5Ac-(2->]n polyanion monarch-merged.owl owl:Class CHEBI:139285 biolink:NamedThing [(2->8)-N,O(7)-diacetyl-alpha-D-neuraminosyl]n polyanion monarch-merged.owl owl:Class CHEBI:139286 biolink:NamedThing [(2->8)-N,O(9)-diacetyl-alpha-D-neuraminosyl]n polyanion monarch-merged.owl owl:Class CHEBI:139287 biolink:NamedThing [(2->6)-alpha-D-glucosyl-(1->4)-N-acetyl-alpha-D-neuraminosyl]n polyanion monarch-merged.owl owl:Class CHEBI:139288 biolink:NamedThing [(2->6)-alpha-D-glucosyl-(1->4)-N,O(7)-diacetyl-alpha-D-neuraminosyl]n polyanion monarch-merged.owl owl:Class CHEBI:139289 biolink:NamedThing [(2->6)-alpha-D-glucosyl-(1->4)-N,O(9)-diacetyl-alpha-D-neuraminosyl]n polyanion monarch-merged.owl owl:Class CHEBI:140312 biolink:NamedThing [beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-N-(beta-D-Asp)-L-Lys-D-Ala-D-Ala)]n polyanion monarch-merged.owl owl:Class CHEBI:57652 biolink:NamedThing chondroitin D-glucuronate anion Anionic form of chondroitin D-glucuronate arising from deprotonation of the carboxylic acid groups of the repeating units; major species at pH 7.3. monarch-merged.owl chondroitin D-glucuronate|chondroitin D-glucuronate polyanion H2O(C14H20NO11)n chebi_ontology owl:Class CHEBI:68837 biolink:NamedThing pectate monarch-merged.owl owl:Class CHEBI:74589 biolink:NamedThing Ser-tRNA(Sec) polyanion monarch-merged.owl owl:Class CHEBI:74764 biolink:NamedThing Cys-tRNA(Sec) polyanion monarch-merged.owl owl:Class CHEBI:78435 biolink:NamedThing [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphospho-ditrans,polycis-undecaprenol polyanion monarch-merged.owl owl:Class CHEBI:132157 biolink:NamedThing hydroxy-1,4-naphthoquinone monarch-merged.owl owl:Class CHEBI:27418 biolink:NamedThing 1,4-naphthoquinone monarch-merged.owl owl:Class CHEBI:28384 biolink:NamedThing vitamin K Any member of a group of fat-soluble 2-methyl-1,4-napthoquinones that exhibit biological activity against vitamin K deficiency. Vitamin K is required for the synthesis of prothrombin and certain other blood coagulation factors. monarch-merged.owl vitamine K|vitamin K vitamer|vitamin K vitamers|vitamins K|Vitamin K PMID:26413183|PMID:33255760|Wikipedia:Vitamin_K|PMID:34109217|MetaCyc:CPD-11501|CAS:12001-79-5|KEGG:C01628 CHEBI:27301|CHEBI:27307|CHEBI:10009 chebi_ontology owl:Class CHEBI:28869 biolink:NamedThing menadione monarch-merged.owl owl:Class CHEBI:88158 biolink:NamedThing 1,4-naphthoquinone-2-carboxylic acid monarch-merged.owl owl:Class CHEBI:132174 biolink:NamedThing beta-D-glucosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:132183 biolink:NamedThing (3S)-hydroxyadipyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:133241 biolink:NamedThing omega-carboxyacyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:133901 biolink:NamedThing 3-aminobutyryl-CoA(3-) monarch-merged.owl owl:Class CHEBI:57253 biolink:NamedThing (R)-2-benzylsuccinyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57320 biolink:NamedThing citramalyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57321 biolink:NamedThing (3S)-citryl-CoA(6-) monarch-merged.owl owl:Class CHEBI:57326 biolink:NamedThing (R)-methylmalonyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57327 biolink:NamedThing (S)-methylmalonyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57339 biolink:NamedThing 3-(4-methylpent-3-en-1-yl)pent-2-enedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57346 biolink:NamedThing trans-3-methylglutaconyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57348 biolink:NamedThing 3-oxoadipyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57350 biolink:NamedThing 3-oxopimeloyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57352 biolink:NamedThing 4-aminobutanoyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:57353 biolink:NamedThing trans-4-carboxybut-2-enoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57358 biolink:NamedThing 5-hydroxythiophene-2-carbonyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57359 biolink:NamedThing 2,3-didehydropimeloyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57362 biolink:NamedThing beta-alanyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:57364 biolink:NamedThing 4-(2-carboxyphenyl)-4-oxobutanoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57365 biolink:NamedThing 5-hydroxy-2-furoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57366 biolink:NamedThing L-3-aminobutanoyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:57381 biolink:NamedThing itaconyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57384 biolink:NamedThing malonyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:58519 biolink:NamedThing (E)-2-benzylidenesuccinyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:58786 biolink:NamedThing cis-3,4-didehydroadipoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:59916 biolink:NamedThing methylmalonyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:60932 biolink:NamedThing (R)-carnitinyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:60933 biolink:NamedThing (E)-4-(trimethylammonio)but-2-enoyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:61513 biolink:NamedThing gamma-butyrobetainyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:61994 biolink:NamedThing sulfoacetyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:62047 biolink:NamedThing (S)-carnitinyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:62500 biolink:NamedThing methacrylyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62548 biolink:NamedThing 3-oxodecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62555 biolink:NamedThing 3-hydroxyisovaleryl-CoA(4-) monarch-merged.owl owl:Class CHEBI:63255 biolink:NamedThing 3-oxo-5,6-dehydrosuberyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:67261 biolink:NamedThing (Z)-2,3-dehydroadipyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:70990 biolink:NamedThing 3-hydroxyadipyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:71044 biolink:NamedThing 2,3-didehydroadipoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:71239 biolink:NamedThing (2Z)-4-carboxylato-2-sulfanylbut-2-enoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:71277 biolink:NamedThing 4-carboxylato-2-thioxobutanoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:75634 biolink:NamedThing L-erythro-3-methylmalyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76330 biolink:NamedThing trans-2-octenedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76333 biolink:NamedThing (S)-3-hydroxyoctanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76335 biolink:NamedThing 3-oxooctanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76340 biolink:NamedThing trans-2-dodecenedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76342 biolink:NamedThing (S)-3-hydroxydodecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76346 biolink:NamedThing 3-oxododecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76347 biolink:NamedThing trans-2-decenedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76348 biolink:NamedThing (S)-3-hydroxydecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76349 biolink:NamedThing 3-oxodecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77038 biolink:NamedThing (3S)-hydroxytetradecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77039 biolink:NamedThing (2E)-tetradecenedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77041 biolink:NamedThing 3-oxotetradecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77075 biolink:NamedThing (2E)-hexadecenedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77079 biolink:NamedThing (3R)-hydroxyhexadecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77080 biolink:NamedThing (3S)-hydroxyhexadecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77081 biolink:NamedThing 3-oxohexadecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77084 biolink:NamedThing tetradecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:77085 biolink:NamedThing hexadecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:78349 biolink:NamedThing 3-sulfinopropionyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:78628 biolink:NamedThing 2-hydroxyglutaryl-CoA(5-) monarch-merged.owl owl:Class CHEBI:79188 biolink:NamedThing (3R)-3-ammonio-3-phenylpropanoyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:84128 biolink:NamedThing 2-carboxyacyl CoA(5-) monarch-merged.owl owl:Class CHEBI:84866 biolink:NamedThing (2S)-methylsuccinyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:85404 biolink:NamedThing 3-dehydrocarnityl CoA(3-) monarch-merged.owl owl:Class CHEBI:85405 biolink:NamedThing N,N,N-trimethylglycyl-CoA(3-) monarch-merged.owl owl:Class CHEBI:132188 biolink:NamedThing methionine sulfone monarch-merged.owl owl:Class CHEBI:25230 biolink:NamedThing methionine derivative monarch-merged.owl owl:Class CHEBI:47833 biolink:NamedThing methionine sulfoximine monarch-merged.owl owl:Class CHEBI:49033 biolink:NamedThing methionine S-oxide monarch-merged.owl owl:Class CHEBI:84121 biolink:NamedThing L-methionine derivative monarch-merged.owl owl:Class CHEBI:84122 biolink:NamedThing D-methionine derivative monarch-merged.owl owl:Class CHEBI:35850 biolink:NamedThing sulfone monarch-merged.owl owl:Class CHEBI:90356 biolink:NamedThing dibenzothiophene sulfone monarch-merged.owl owl:Class CHEBI:9349 biolink:NamedThing sulfonyldimethane monarch-merged.owl owl:Class CHEBI:15914 biolink:NamedThing 2-amino-4-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:15916 biolink:NamedThing serine phosphoethanolamine monarch-merged.owl owl:Class CHEBI:16228 biolink:NamedThing 2,2-dialkylglycine monarch-merged.owl owl:Class CHEBI:16273 biolink:NamedThing 2-amino-3-oxo-4-(phosphonooxy)butanoic acid monarch-merged.owl owl:Class CHEBI:16733 biolink:NamedThing D-alpha-amino acid monarch-merged.owl D-alpha-amino acid|D-alpha-amino acids|D-Amino acid 0 C2H4NO2R 74.05870 74.02420 N[C@H]([*])C(O)=O KEGG:C00405 CHEBI:12909|CHEBI:13625|CHEBI:20906|CHEBI:4097 chebi_ontology owl:Class CHEBI:16770 biolink:NamedThing N(5)-(L-1-carboxyethyl)-L-ornithine monarch-merged.owl owl:Class CHEBI:16886 biolink:NamedThing 2-aminomuconic acid monarch-merged.owl owl:Class CHEBI:17027 biolink:NamedThing allysine An alpha-amino acid consisting of lysine having an oxo group in place of the side-chain amino group. monarch-merged.owl 2-amino-6-oxohexanoic acid|alpha-aminoadipic delta-semialdehyde|2-Aminoadipate 6-semialdehyde|allysine|Allysine|HCO-[CH2]3-CH(NH2)-COOH|alpha-aminoadipic acid delta-semialdehyde|6-oxonorleucine|2-amino-5-formylvaleric acid 0 C6H11NO3 InChI=1S/C6H11NO3/c7-5(6(9)10)3-1-2-4-8/h4-5H,1-3,7H2,(H,9,10) GFXYTQPNNXGICT-UHFFFAOYSA-N 145.15648 145.07389 [H]C(=O)CCCC(N)C(O)=O Beilstein:1857434|CAS:1962-83-0|KEGG:C01475 CHEBI:11519|CHEBI:2605|CHEBI:13764 chebi_ontology owl:Class CHEBI:17230 biolink:NamedThing homocysteine A sulfur-containing amino acid consisting of a glycine core with a 2-mercaptoethyl side-chain. monarch-merged.owl Hcy|Homocysteine|2-amino-4-sulfanylbutanoic acid|2-Amino-4-mercaptobutyric acid|homocysteine 0 C4H9NO2S InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7) FFFHZYDWPBMWHY-UHFFFAOYSA-N 135.18580 135.03540 NC(CCS)C(O)=O Wikipedia:Homocysteine|PMID:11133260|PMID:18370634|PMID:16596805|KEGG:C05330|HMDB:HMDB0000742 CHEBI:5751|CHEBI:14408 chebi_ontology owl:Class CHEBI:17339 biolink:NamedThing N(5)-acyl-L-ornithine monarch-merged.owl owl:Class CHEBI:17740 biolink:NamedThing 3-oxoalanine monarch-merged.owl owl:Class CHEBI:18257 biolink:NamedThing ornithine An alpha-amino acid that is pentanoic acid bearing two amino substituents at positions 2 and 5. monarch-merged.owl Ornithine|DL-Ornithine|Orn|2,5-Diaminovaleric acid|2,5-Diaminopentanoic acid|ornithine|2,5-diaminopentanoic acid 0 C5H12N2O2 InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9) AHLPHDHHMVZTML-UHFFFAOYSA-N 132.16106 132.08988 NCCCC(N)C(O)=O Gmelin:847696|PMID:17190852|KNApSAcK:C00001384|PMID:15449570|PMID:22264337|Reaxys:1722296|Beilstein:1722296|CAS:616-07-9|KEGG:C01602 CHEBI:7784 chebi_ontology owl:Class CHEBI:18377 biolink:NamedThing N-formylkynurenine monarch-merged.owl owl:Class CHEBI:19448 biolink:NamedThing 2-amino-3-(3-oxoprop-1-enyl)but-2-enedioic acid monarch-merged.owl owl:Class CHEBI:19475 biolink:NamedThing 2-aminopentanoic acid monarch-merged.owl owl:Class CHEBI:21239 biolink:NamedThing arogenic acid monarch-merged.owl owl:Class CHEBI:21260 biolink:NamedThing cysteic acid monarch-merged.owl owl:Class CHEBI:23127 biolink:NamedThing chloroalanine monarch-merged.owl owl:Class CHEBI:23324 biolink:NamedThing citrullines monarch-merged.owl chebi_ontology owl:Class CHEBI:24610 biolink:NamedThing homocysteines monarch-merged.owl chebi_ontology owl:Class CHEBI:24612 biolink:NamedThing homocystines A non-proteinogenic alpha-amino acid obtained by oxidative dimerisation of homocysteine and its derivatives. monarch-merged.owl chebi_ontology owl:Class CHEBI:24619 biolink:NamedThing homoserine derivative monarch-merged.owl owl:Class CHEBI:24662 biolink:NamedThing hydroxy-amino acid A non-proteinogenic alpha-amino acid bearing one or more hydroxy groups at unspecified positions. monarch-merged.owl chebi_ontology owl:Class CHEBI:24786 biolink:NamedThing iminodiacetic acid monarch-merged.owl owl:Class CHEBI:30660 biolink:NamedThing thyroxine An iodothyronine compound having iodo substituents at the 3-, 3'-, 5- and 5'-positions. monarch-merged.owl Thx|2-amino-3-[4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodophenyl]propanoic acid|DL-Thyroxine|thyroxine|O-(4-Hydroxy-3,5-diiodophenyl)-3,5-diiodo-DL-tyrosine 0 C15H11I4NO4 InChI=1S/C15H11I4NO4/c16-8-4-7(5-9(17)13(8)21)24-14-10(18)1-6(2-11(14)19)3-12(20)15(22)23/h1-2,4-5,12,21H,3,20H2,(H,22,23) XUIIKFGFIJCVMT-UHFFFAOYSA-N 776.87006 776.68669 NC(Cc1cc(I)c(Oc2cc(I)c(O)c(I)c2)c(I)c1)C(O)=O PMID:9824273|Beilstein:2228514|PMID:15206581|PMID:24375501|CAS:300-30-1 chebi_ontology owl:Class CHEBI:30885 biolink:NamedThing lupinic acid monarch-merged.owl owl:Class CHEBI:36405 biolink:NamedThing 2-aminohexanoic acid monarch-merged.owl owl:Class CHEBI:37024 biolink:NamedThing 2-aminoadipic acid An alpha-amino acid that is adipic acid bearing a single amino substituent at position 2. An intermediate in the formation of lysine. monarch-merged.owl DL-2-Aminoadipic acid|2-aminoadipic acid|(+/-)-2-Aminoadipic acid|alpha-aminoadipic acid|aminoadipic acid|Aad|2-aminohexanedioic acid|alpha-Aminoadipic acid|DL-alpha-Aminoadipic acid|DL-2-Aminohexanedioic acid 0 C6H11NO4 InChI=1S/C6H11NO4/c7-4(6(10)11)2-1-3-5(8)9/h4H,1-3,7H2,(H,8,9)(H,10,11) OYIFNHCXNCRBQI-UHFFFAOYSA-N 161.15588 161.06881 NC(CCCC(O)=O)C(O)=O Wikipedia:Alpha-Aminoadipic_acid|PMID:22264337|PMID:6462455|CAS:542-32-5|Beilstein:1773077|Reaxys:1724349|HMDB:HMDB0000510|Beilstein:1724349|PMID:31148 CHEBI:64698 chebi_ontology owl:Class CHEBI:37712 biolink:NamedThing O-phosphoserine monarch-merged.owl owl:Class CHEBI:48006 biolink:NamedThing gamma-glutamylputrescine monarch-merged.owl owl:Class CHEBI:48029 biolink:NamedThing 4-methyleneglutamic acid monarch-merged.owl owl:Class CHEBI:48305 biolink:NamedThing 2-aminobut-2-enoic acid monarch-merged.owl owl:Class CHEBI:49168 biolink:NamedThing dopa A hydroxyphenylalanine carrying hydroxy substituents at positions 3 and 4 of the benzene ring. monarch-merged.owl dl-beta-(3,4-dihydroxyphenyl)-alpha-alanine|3',4'-dihydroxyphenylalanine|3-hydroxytyrosine|(+-)-3-(3,4-dihydroxyphenyl)alanine|2-amino-3-(3,4-dihydroxyphenyl)propanoic acid|dopa|beta-(3,4-dihydroxyphenyl)-DL-alpha-alanine|3-hydroxy-DL-tyrosine|DL-beta-(3,4-dihydroxyphenyl)alanine|(+-)-dopa|DL-3,4-dopa|DL-dihydroxyphenylalanine|(R,S)-dopa|DL-dioxyphenylalanine owl:Class CHEBI:50707 biolink:NamedThing homomethionine monarch-merged.owl owl:Class CHEBI:50710 biolink:NamedThing dihomomethionine monarch-merged.owl owl:Class CHEBI:50711 biolink:NamedThing trihomomethionine monarch-merged.owl owl:Class CHEBI:50712 biolink:NamedThing tetrahomomethionine monarch-merged.owl owl:Class CHEBI:50713 biolink:NamedThing pentahomomethionine monarch-merged.owl owl:Class CHEBI:50714 biolink:NamedThing hexahomomethionine monarch-merged.owl owl:Class CHEBI:55484 biolink:NamedThing alpha-phenylglycine monarch-merged.owl owl:Class CHEBI:64307 biolink:NamedThing 2,4-diaminobutyric acid monarch-merged.owl owl:Class CHEBI:66933 biolink:NamedThing N-alkylglycine Any glycine derivative in which glycine is substituted at position 2 by an alkyl group. monarch-merged.owl N-alkylglycines 0 C2H4NO2R 74.059 74.02420 OC(=O)CN[*] PMID:9989229|MetaCyc:N-Alkylglycine chebi_ontology owl:Class CHEBI:70958 biolink:NamedThing 1-methylhistidine A methylhistidine in which the methyl group is located at N-1. monarch-merged.owl 1-methyl-DL-histidine|2-amino-3-(1-methyl-1H-imidazol-4-yl)propanoic acid|1-methylhistidine 0 C7H11N3O2 InChI=1S/C7H11N3O2/c1-10-3-5(9-4-10)2-6(8)7(11)12/h3-4,6H,2,8H2,1H3,(H,11,12) BRMWTNUJHUMWMS-UHFFFAOYSA-N 169.18110 169.08513 Cn1cnc(CC(N)C(O)=O)c1 PMID:22770225|Reaxys:611190 chebi_ontology owl:Class CHEBI:70959 biolink:NamedThing 3-methylhistidine A methylhistidine in which the methyl group is located at N-3. monarch-merged.owl 3-methylhistidine|3-methyl-DL-histidine|2-amino-3-(1-methyl-1H-imidazol-5-yl)propanoic acid 0 C7H11N3O2 InChI=1S/C7H11N3O2/c1-10-4-9-3-5(10)2-6(8)7(11)12/h3-4,6H,2,8H2,1H3,(H,11,12) JDHILDINMRGULE-UHFFFAOYSA-N 169.18110 169.08513 Cn1cncc1CC(N)C(O)=O PMID:24681531|PMID:22770225|Reaxys:83652|PMID:24009031 chebi_ontology owl:Class CHEBI:74956 biolink:NamedThing O(4)-phosphotyrosine monarch-merged.owl owl:Class CHEBI:7671 biolink:NamedThing O-acetylhomoserine monarch-merged.owl owl:Class CHEBI:77488 biolink:NamedThing (3S)-3-hydroxy-L-ornithine monarch-merged.owl owl:Class CHEBI:904 biolink:NamedThing 2,4-diaminopentanoic acid monarch-merged.owl owl:Class CHEBI:9068 biolink:NamedThing Se-methylselenocysteine monarch-merged.owl owl:Class CHEBI:132198 biolink:NamedThing pentahydroxyanthraquinone monarch-merged.owl owl:Class CHEBI:37483 biolink:NamedThing monohydroxyanthraquinone monarch-merged.owl owl:Class CHEBI:37484 biolink:NamedThing dihydroxyanthraquinone monarch-merged.owl owl:Class CHEBI:37488 biolink:NamedThing trihydroxyanthraquinone monarch-merged.owl owl:Class CHEBI:37496 biolink:NamedThing tetrahydroxyanthraquinone monarch-merged.owl owl:Class CHEBI:134610 biolink:NamedThing N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate(2-) monarch-merged.owl owl:Class CHEBI:35808 biolink:NamedThing citrate(2-) A tricarboxylic acid dianion obtained by deprotonation of two of the three carboxy groups of citric acid. monarch-merged.owl hydrogen citrate|Hcit|Hcit(2-) -2 C6H6O7 190.10764 190.01135 chebi_ontology owl:Class CHEBI:36453 biolink:NamedThing isocitrate(2-) monarch-merged.owl owl:Class CHEBI:36455 biolink:NamedThing homoisocitrate(2-) monarch-merged.owl owl:Class CHEBI:36458 biolink:NamedThing homocitrate(2-) monarch-merged.owl owl:Class CHEBI:39056 biolink:NamedThing nitrilotriacetate(2-) monarch-merged.owl owl:Class CHEBI:57556 biolink:NamedThing S-(3-carboxylatopropanoyl)glutathionate(2-) monarch-merged.owl owl:Class CHEBI:58684 biolink:NamedThing 3-epi-3-hydroxy-2'-deoxymugineate monarch-merged.owl owl:Class CHEBI:58778 biolink:NamedThing 6-(2-azaniumyl-2-carboxylatoethyl)-7,8-dioxo-1,2,3,4,7,8-hexahydroquinoline-2,4-dicarboxylate monarch-merged.owl owl:Class CHEBI:132202 biolink:NamedThing (2R)-CDP-glycerol monarch-merged.owl owl:Class CHEBI:17885 biolink:NamedThing CDP-glycerol monarch-merged.owl owl:Class CHEBI:132210 biolink:NamedThing N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate(2-) monarch-merged.owl owl:Class CHEBI:134661 biolink:NamedThing 5(S),6(S)-epoxy-18(S)-hydroxy-(7E,9E,11Z,14Z,16E)-icosapentaenoate monarch-merged.owl owl:Class CHEBI:61498 biolink:NamedThing epoxy fatty acid monarch-merged.owl owl:Class CHEBI:88457 biolink:NamedThing 14,15-EpETE monarch-merged.owl owl:Class CHEBI:132232 biolink:NamedThing ethylenediaminetriacetic acid monarch-merged.owl owl:Class CHEBI:24373 biolink:NamedThing glycine derivative A proteinogenic amino acid derivative resulting from reaction of glycine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. monarch-merged.owl chebi_ontology owl:Class CHEBI:132240 biolink:NamedThing ethylenediaminediacetic acid monarch-merged.owl owl:Class CHEBI:137652 biolink:NamedThing N-acetyl-L-alpha-phenylglycine monarch-merged.owl owl:Class CHEBI:15737 biolink:NamedThing N-carbamoylsarcosine monarch-merged.owl owl:Class CHEBI:16919 biolink:NamedThing creatine A glycine derivative having methyl and amidino groups attached to the nitrogen. monarch-merged.owl Creatin|N-methyl-N-guanylglycine|Methylglycocyamine|alpha-Methylguanidino acetic acid|((amino(imino)methyl)(methyl)amino)acetic acid|N-Methyl-N-guanylglycine|N-carbamimidoyl-N-methylglycine|(alpha-methylguanido)acetic acid|Kreatin|N-(aminoiminomethyl)-N-methylglycine|N-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE|N-[amino(imino)methyl]-N-methylglycine|(N-methylcarbamimidamido)acetic acid|N-amidinosarcosine|Creatine 0 C4H9N3O2 InChI=1S/C4H9N3O2/c1-7(4(5)6)2-3(8)9/h2H2,1H3,(H3,5,6)(H,8,9) CVSVTCORWBXHQV-UHFFFAOYSA-N 131.13328 131.06948 CN(CC(O)=O)C(N)=N Wikipedia:Creatine|PMID:22386973|PMID:22347384|PMID:7752905|PDBeChem:CRN|PMID:22101931|PMID:21660517|PMID:12184144|PMID:19651674|DrugBank:DB00148|PMID:19741514|PMID:21556832|PMID:17416441|PMID:21698493|PMID:22465051|PMID:11483809|PMID:22038587|PMID:22196490|PMID:12085493|PMID:17190852|HMDB:HMDB0000064|PMID:22429992|MetaCyc:CREATINE|PMID:22422801|PMID:11356982|Chemspider:566|Drug_Central:4661|PMID:16445883|KEGG:C00300|PMID:22252611|CAS:57-00-1|PMID:17253521|PMID:19968328|Beilstein:907175|Gmelin:240513|PMID:12878267|PMID:22521466|Reaxys:907175|PMID:18555535|PMID:11867929|PMID:19082141 CHEBI:41678|CHEBI:23404|CHEBI:3909|CHEBI:14028 chebi_ontology owl:Class CHEBI:18415 biolink:NamedThing N-formimidoylglycine monarch-merged.owl owl:Class CHEBI:24108 biolink:NamedThing fructosylglycine monarch-merged.owl owl:Class CHEBI:24372 biolink:NamedThing glycine cholesterol esters monarch-merged.owl owl:Class CHEBI:24439 biolink:NamedThing guanidinoacetic acids monarch-merged.owl owl:Class CHEBI:25921 biolink:NamedThing peptidyl-glycine monarch-merged.owl owl:Class CHEBI:26965 biolink:NamedThing thioglycines monarch-merged.owl owl:Class CHEBI:27744 biolink:NamedThing glyphosate monarch-merged.owl owl:Class CHEBI:36255 biolink:NamedThing bile acid glycine conjugate monarch-merged.owl owl:Class CHEBI:71209 biolink:NamedThing N-(cyanomethyl)glycine monarch-merged.owl owl:Class CHEBI:74782 biolink:NamedThing 5-carboxymethylaminomethyluridine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74785 biolink:NamedThing 5-carboxymethylaminomethyl-2'-O-methyluridine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:86649 biolink:NamedThing Guanidineacetic acid monarch-merged.owl owl:Class CHEBI:136987 biolink:NamedThing N-[(2S)-2-amino-2-carboxyethyl]-L-glutamic acid monarch-merged.owl owl:Class CHEBI:15608 biolink:NamedThing (2S,3S)-2-hydroxytridecane-1,2,3-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:15615 biolink:NamedThing (3S,4S)-3-hydroxytetradecane-1,3,4-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:15668 biolink:NamedThing (1E)-4-oxobut-1-ene-1,2,4-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:15749 biolink:NamedThing 3-carboxy-cis,cis-muconic acid monarch-merged.owl owl:Class CHEBI:16166 biolink:NamedThing 2-caffeoylisocitric acid monarch-merged.owl owl:Class CHEBI:16281 biolink:NamedThing 3-(2-carboxyethenyl)-cis,cis-muconic acid monarch-merged.owl owl:Class CHEBI:16717 biolink:NamedThing (Z)-but-2-ene-1,2,3-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:17040 biolink:NamedThing (carboxymethoxy)succinic acid monarch-merged.owl owl:Class CHEBI:17250 biolink:NamedThing 2-hydroxy-4-oxobutane-1,2,4-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:17279 biolink:NamedThing N-succinyl-LL-2,6-diaminopimelic acid monarch-merged.owl owl:Class CHEBI:17344 biolink:NamedThing 2-carboxy-cis,cis-muconic acid monarch-merged.owl owl:Class CHEBI:17516 biolink:NamedThing but-1-ene-1,2,4-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:17852 biolink:NamedThing homocitric acid monarch-merged.owl owl:Class CHEBI:18356 biolink:NamedThing pyrroloquinoline quinol monarch-merged.owl owl:Class CHEBI:19274 biolink:NamedThing 2'-deoxymugineic acid monarch-merged.owl owl:Class CHEBI:20013 biolink:NamedThing 3-epi-3-hydroxymugineic acid monarch-merged.owl owl:Class CHEBI:22211 biolink:NamedThing aconitic acid monarch-merged.owl owl:Class CHEBI:25311 biolink:NamedThing methylisocitric acid monarch-merged.owl owl:Class CHEBI:25427 biolink:NamedThing mugineic acids monarch-merged.owl owl:Class CHEBI:29094 biolink:NamedThing homoisocitric acid monarch-merged.owl owl:Class CHEBI:30769 biolink:NamedThing citric acid A tricarboxylic acid that is propane-1,2,3-tricarboxylic acid bearing a hydroxy substituent at position 2. It is an important metabolite in the pathway of all aerobic organisms. monarch-merged.owl CITRIC ACID|2-hydroxypropane-1,2,3-tricarboxylic acid|H3cit|3-Carboxy-3-hydroxypentane-1,5-dioic acid|2-Hydroxytricarballylic acid|Citronensaeure|E330|Citric acid|2-Hydroxy-1,2,3-propanetricarboxylic acid 0 C6H8O7 InChI=1S/C6H8O7/c7-3(8)1-6(13,5(11)12)2-4(9)10/h13H,1-2H2,(H,7,8)(H,9,10)(H,11,12) KRKNYBCHXYNGOX-UHFFFAOYSA-N 192.123 192.02700 OC(=O)CC(O)(CC(O)=O)C(O)=O PMID:22192423|MetaCyc:CIT|KNApSAcK:C00007619|CAS:77-92-9|KEGG:D00037|Drug_Central:666|PMID:22373571|PMID:15311880|PMID:11762832|PMID:18298573|BPDB:1359|DrugBank:DB04272|PMID:11782123|HMDB:HMDB0000094|PMID:16232627|KEGG:C00158|PMID:11857437|PDBeChem:CIT|Reaxys:782061|PMID:14537820|PMID:22115968|Beilstein:782061|PMID:17190852|PMID:19288211|Wikipedia:Citric_Acid|PMID:22264346|PMID:18960216|Gmelin:4240|PMID:17357118|PMID:17604395|PMID:22509852|PMID:15934243 CHEBI:41523|CHEBI:23322|CHEBI:3727 chebi_ontology owl:Class CHEBI:30835 biolink:NamedThing 2-methylcitric acid monarch-merged.owl owl:Class CHEBI:30926 biolink:NamedThing 3-oxalomalic acid monarch-merged.owl owl:Class CHEBI:35266 biolink:NamedThing L-2-succinylamino-6-oxoheptanedioic acid monarch-merged.owl owl:Class CHEBI:44557 biolink:NamedThing nitrilotriacetic acid monarch-merged.owl owl:Class CHEBI:45969 biolink:NamedThing tricarballylic acid monarch-merged.owl owl:Class CHEBI:47959 biolink:NamedThing 5-hydroxypenta-2,4-diene-1,2,5-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:48957 biolink:NamedThing N(2)-succinyl-L-glutamic acid monarch-merged.owl owl:Class CHEBI:50271 biolink:NamedThing (1R,2S,5S,6S)-2-(3-carboxypropanoyl)-5-[(1-carboxyvinyl)oxy]-6-hydroxycyclohex-3-ene-1-carboxylic acid monarch-merged.owl owl:Class CHEBI:55353 biolink:NamedThing (2E)-but-2-ene-1,2,3-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:72698 biolink:NamedThing (2R)-trihomocitric acid monarch-merged.owl owl:Class CHEBI:7815 biolink:NamedThing oxalosuccinic acid monarch-merged.owl owl:Class CHEBI:87509 biolink:NamedThing (2R,3E)-5-oxopent-3-ene-1,2,5-tricarboxylic acid monarch-merged.owl owl:Class CHEBI:31577 biolink:NamedThing ethylenediamine derivative monarch-merged.owl owl:Class CHEBI:42191 biolink:NamedThing ethylenediaminetetraacetic acid monarch-merged.owl owl:Class CHEBI:60892 biolink:NamedThing polyamino carboxylic acid monarch-merged.owl owl:Class CHEBI:132233 biolink:NamedThing 1-phenylpropan-2-amine A primary amine that is isopropylamine in which a hydrogen attached to one of the methyl groups has been replaced by a phenyl group. monarch-merged.owl 1-phenylpropan-2-amine owl:Class CHEBI:13759 biolink:NamedThing alkylamine monarch-merged.owl owl:Class CHEBI:17062 biolink:NamedThing primary aliphatic amine monarch-merged.owl primary aliphatic amines|RCH2NH2 0 CH4NR 30.04920 30.03437 NC[*] KEGG:C00375 CHEBI:13431|CHEBI:8749 chebi_ontology owl:Class CHEBI:40538 biolink:NamedThing benzylamine monarch-merged.owl owl:Class CHEBI:50048 biolink:NamedThing phenylethylamine monarch-merged.owl owl:Class CHEBI:50471 biolink:NamedThing primary arylamine monarch-merged.owl owl:Class CHEBI:55436 biolink:NamedThing 2-arylethylamine monarch-merged.owl owl:Class CHEBI:134286 biolink:NamedThing O-succinyl-L-serine monarch-merged.owl owl:Class CHEBI:15337 biolink:NamedThing beta-alanopine monarch-merged.owl owl:Class CHEBI:15427 biolink:NamedThing N(2)-(2-carboxyethyl)-L-arginine monarch-merged.owl owl:Class CHEBI:17475 biolink:NamedThing aminomalonic acid monarch-merged.owl owl:Class CHEBI:23673 biolink:NamedThing 2,6-diaminopimelic acid monarch-merged.owl owl:Class CHEBI:32976 biolink:NamedThing 2,3,4,5-tetrahydrodipicolinic acid monarch-merged.owl owl:Class CHEBI:49004 biolink:NamedThing N-acetyl-LL-2,6-diaminopimelic acid monarch-merged.owl owl:Class CHEBI:49259 biolink:NamedThing (2S)-2-[(R)-1-carboxyethylamino]pentanoic acid monarch-merged.owl owl:Class CHEBI:49260 biolink:NamedThing 4-(L-gamma-glutamylamino)butanoic acid monarch-merged.owl owl:Class CHEBI:83981 biolink:NamedThing 3-hydroxyaspartic acid monarch-merged.owl owl:Class CHEBI:857 biolink:NamedThing 2,2'-iminodipropanoic acid monarch-merged.owl owl:Class CHEBI:132245 biolink:NamedThing (2R,3S)-glycosmisic acid monarch-merged.owl owl:Class CHEBI:15367 biolink:NamedThing all-trans-retinoic acid monarch-merged.owl owl:Class CHEBI:17336 biolink:NamedThing all-trans-retinol monarch-merged.owl owl:Class CHEBI:17898 biolink:NamedThing all-trans-retinal monarch-merged.owl owl:Class CHEBI:63410 biolink:NamedThing all-trans-retinyl ester monarch-merged.owl owl:Class CHEBI:16547 biolink:NamedThing coniferyl aldehyde monarch-merged.owl owl:Class CHEBI:17745 biolink:NamedThing coniferol monarch-merged.owl owl:Class CHEBI:18353 biolink:NamedThing vanillyl alcohol monarch-merged.owl owl:Class CHEBI:28591 biolink:NamedThing guaiacol monarch-merged.owl owl:Class CHEBI:8225 biolink:NamedThing pinoresinol monarch-merged.owl owl:Class CHEBI:25036 biolink:NamedThing lignan monarch-merged.owl owl:Class CHEBI:136542 biolink:NamedThing (+)-sesamin monocatechol monarch-merged.owl owl:Class CHEBI:136543 biolink:NamedThing (+)-sesamin dicatechol monarch-merged.owl owl:Class CHEBI:4429 biolink:NamedThing deoxypodophyllotoxin monarch-merged.owl owl:Class CHEBI:50305 biolink:NamedThing podophyllotoxin monarch-merged.owl owl:Class CHEBI:66470 biolink:NamedThing (+)-sesamin monarch-merged.owl owl:Class CHEBI:6698 biolink:NamedThing (-)-matairesinol monarch-merged.owl owl:Class CHEBI:67154 biolink:NamedThing (+)-3'-hydroxylarreatricin monarch-merged.owl owl:Class CHEBI:67250 biolink:NamedThing secoisolariciresinol monarch-merged.owl owl:Class CHEBI:38830 biolink:NamedThing 1-benzofurans monarch-merged.owl owl:Class CHEBI:50542 biolink:NamedThing menthofuran monarch-merged.owl owl:Class CHEBI:72576 biolink:NamedThing aurones monarch-merged.owl owl:Class CHEBI:132253 biolink:NamedThing 12,18-didecarboxysirohaem monarch-merged.owl owl:Class CHEBI:30413 biolink:NamedThing heme A heme is any tetrapyrrolic chelate of iron. monarch-merged.owl haem|heme|hem|hemos|haeme|hemes|Haem COMe:MOL000025|DrugBank:DB03014|KEGG:C00032 CHEBI:14386|CHEBI:24491 chebi_ontology owl:Class CHEBI:24479 biolink:NamedThing heme a monarch-merged.owl owl:Class CHEBI:24480 biolink:NamedThing heme o monarch-merged.owl owl:Class CHEBI:26355 biolink:NamedThing heme b A metalloprotoporphyrin in which the four pyrrole nitrogens of the protoporphyrin moiety are coordinated to iron. It is the most abundant of the heme compounds. monarch-merged.owl heme|heme b|PROTOPORPHYRIN IX CONTAINING FE|(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron|(protoporphyrinato)iron|Heme B|protoheme|Protoheme|[3,7,12,17-tetramethyl-8,13-divinylporphyrin-2,18-dipropanoato(2-)]iron|haem b|Haem|Protoheme IX 0 C34H32FeN4O4 InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-; KABFMIBPWCXCRK-RGGAHWMASA-L 616.48700 616.17729 CC1=C(CCC(O)=O)C2=[N]3C1=Cc1c(C)c(C=C)c4C=C5C(C)=C(C=C)C6=[N]5[Fe]3(n14)n1c(=C6)c(C)c(CCC(O)=O)c1=C2 PMID:20546754|Wikipedia:Heme_B|PDB:3KS0|PMID:29286160|ECMDB:ECMDB03178|KEGG:C00032|COMe:MOL000013|PDBeChem:HEM|CAS:14875-96-8 chebi_ontology owl:Class CHEBI:28599 biolink:NamedThing siroheme monarch-merged.owl owl:Class CHEBI:38573 biolink:NamedThing ferroheme monarch-merged.owl owl:Class CHEBI:38574 biolink:NamedThing ferriheme monarch-merged.owl owl:Class CHEBI:134059 biolink:NamedThing N-palmitoylserotonin monarch-merged.owl owl:Class CHEBI:134064 biolink:NamedThing N-oleoylserotonin monarch-merged.owl owl:Class CHEBI:134065 biolink:NamedThing N-stearoylserotonin monarch-merged.owl owl:Class CHEBI:51006 biolink:NamedThing unsaturated fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:139064 biolink:NamedThing (15Z)-12-oxophyto-10,15-dienoyl-CoA monarch-merged.owl owl:Class CHEBI:139105 biolink:NamedThing (9S,13S)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoyl-CoA monarch-merged.owl owl:Class CHEBI:139107 biolink:NamedThing (9S,13S)-1a,1b-dinor-12-oxo-10,15-phytodienoyl-CoA monarch-merged.owl owl:Class CHEBI:15464 biolink:NamedThing (E,E)-piperonyl-CoA monarch-merged.owl owl:Class CHEBI:15514 biolink:NamedThing arachidonoyl-CoA monarch-merged.owl owl:Class CHEBI:17157 biolink:NamedThing trans,trans-2,3,4,5-tetradehydroacyl-CoA monarch-merged.owl owl:Class CHEBI:19573 biolink:NamedThing 2-enoyl-CoA monarch-merged.owl owl:Class CHEBI:20012 biolink:NamedThing 3-enoyl-CoA monarch-merged.owl owl:Class CHEBI:52831 biolink:NamedThing Delta(11)-fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:63540 biolink:NamedThing (6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:63543 biolink:NamedThing (9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:63546 biolink:NamedThing (6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:63548 biolink:NamedThing (9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:65139 biolink:NamedThing (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74358 biolink:NamedThing (11Z,14Z,17Z,20Z,23Z)-hexacosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74360 biolink:NamedThing (13Z,16Z,19Z,22Z,25Z)-3-oxooctacosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74399 biolink:NamedThing (15Z,18Z,21Z,24Z,27Z)-3-oxotriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74400 biolink:NamedThing (15Z,18Z,21Z,24Z,27Z)-triacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74401 biolink:NamedThing (19Z,22Z,25Z,28Z,31Z)-3-oxotetratriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74402 biolink:NamedThing (17Z,20Z,23Z,26Z,29Z)-3-oxodotriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74409 biolink:NamedThing (17Z,20Z,23Z,26Z,29Z)-dotriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74413 biolink:NamedThing (13Z,16Z,19Z,22Z,25Z)-octacosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74428 biolink:NamedThing (19Z,22Z,25Z,28Z,31Z)-tetratriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74431 biolink:NamedThing (21Z,24Z,27Z,30Z,33Z)-3-oxohexatriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74436 biolink:NamedThing (21Z,24Z,27Z,30Z,33Z)-hexatriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74442 biolink:NamedThing (23Z,26Z,29Z,32Z,35Z)-3-oxooctatriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74476 biolink:NamedThing (11Z,14Z,17Z,20Z)-hexacosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74485 biolink:NamedThing (13Z,16Z,19Z,22Z)-3-oxooctacosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74496 biolink:NamedThing (15Z,18Z,21Z,24Z)-3-oxotriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74499 biolink:NamedThing (15Z,18Z,21Z,24Z)-triacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74504 biolink:NamedThing (17Z,20Z,23Z,26Z)-3-oxodotriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74512 biolink:NamedThing (17Z,20Z,23Z,26Z)-dotriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74515 biolink:NamedThing (19Z,22Z,25Z,28Z)-3-oxotetratriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74519 biolink:NamedThing (19Z,22Z,25Z,28Z)-tetratriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74522 biolink:NamedThing (21Z,24Z,27Z,30Z)-3-oxohexatriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74525 biolink:NamedThing (21Z,24Z,27Z,30Z)-hexatriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74572 biolink:NamedThing (23Z,26Z,29Z,32Z)-3-oxooctatriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74585 biolink:NamedThing (8Z,11Z,14Z,17Z,20Z,23Z)-3-oxohexacosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74587 biolink:NamedThing (8Z,11Z,14Z,17Z,20Z,23Z)-hexacosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74588 biolink:NamedThing (10Z,13Z,16Z,19Z,22Z,25Z)-3-oxooctacosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74590 biolink:NamedThing (10Z,13Z,16Z,19Z,22Z,25Z)-octacosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74592 biolink:NamedThing (12Z,15Z,18Z,21Z,24Z,27Z)-3-oxotriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74593 biolink:NamedThing (12Z,15Z,18Z,21Z,24Z,27Z)-triacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74595 biolink:NamedThing (14Z,17Z,20Z,23Z,26Z,29Z)-3-oxodotriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74600 biolink:NamedThing (14Z,17Z,20Z,23Z,26Z,29Z)-dotriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74601 biolink:NamedThing (16Z,19Z,22Z,25Z,28Z,31Z)-3-oxotetratriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74602 biolink:NamedThing (16Z,19Z,22Z,25Z,28Z,31Z)-tetratriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74603 biolink:NamedThing (18Z,21Z,24Z,27Z,30Z,33Z)-3-oxohexatriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:74665 biolink:NamedThing (10Z,13Z,16Z)-3-oxodocosatrienoyl-CoA monarch-merged.owl owl:Class CHEBI:74666 biolink:NamedThing (12Z,15Z,18Z,21Z)-3-oxotetracosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:74972 biolink:NamedThing (11Z,14Z,17Z,20Z,23Z)-3-oxohexacosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76447 biolink:NamedThing (2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76449 biolink:NamedThing (6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76523 biolink:NamedThing (2E,15Z)-tetracosadienoyl-CoA monarch-merged.owl owl:Class CHEBI:76547 biolink:NamedThing (2E,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76548 biolink:NamedThing (11Z,14Z,17Z,20Z)-3-oxohexacosatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76550 biolink:NamedThing (2E,11Z,14Z,17Z,20Z)-hexacosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76554 biolink:NamedThing (2E,13Z,16Z,19Z,22Z)-octacosapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76560 biolink:NamedThing (2E,15Z,18Z,21Z,24Z)-triacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76566 biolink:NamedThing (2E,17Z,20Z,23Z,26Z)-dotriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76569 biolink:NamedThing (2E,19Z,22Z,25Z,28Z)-tetratriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76571 biolink:NamedThing (2E,21Z,24Z,27Z,30Z)-hexatriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76623 biolink:NamedThing (2E,23Z,26Z,29Z,32Z)-octatriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76626 biolink:NamedThing (23Z,26Z,29Z,32Z)-octatriacontatetraenoyl-CoA monarch-merged.owl owl:Class CHEBI:76646 biolink:NamedThing (2E,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76651 biolink:NamedThing (2E,11Z,14Z,17Z,20Z,23Z)-hexacosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76653 biolink:NamedThing (2E,13Z,16Z,19Z,22Z,25Z)-octacosahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76656 biolink:NamedThing (2E,15Z,18Z,21Z,24Z,27Z)-triacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76658 biolink:NamedThing (2E,17Z,20Z,23Z,26Z,29Z)-dotriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76664 biolink:NamedThing (2E,19Z,22Z,25Z,28Z,31Z)-tetratriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76667 biolink:NamedThing (2E,21Z,24Z,27Z,30Z,33Z)-hexatriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76670 biolink:NamedThing (2E,23Z,26Z,29Z,32Z,35Z)-octatriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76671 biolink:NamedThing (23Z,26Z,29Z,32Z,35Z)-octatriacontapentaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76673 biolink:NamedThing (2E,8Z,11Z,14Z,17Z,20Z,23Z)-hexacosaheptaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76678 biolink:NamedThing (2E,10Z,13Z,16Z,19Z,22Z,25Z)-octacosaheptaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76680 biolink:NamedThing (2E,12Z,15Z,18Z,21Z,24Z,27Z)-triacontaheptaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76683 biolink:NamedThing (2E,14Z,17Z,20Z,23Z,26Z,29Z)-dotriacontaheptaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76685 biolink:NamedThing (2E,16Z,19Z,22Z,25Z,28Z,31Z)-tetratriacontaheptaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76687 biolink:NamedThing (2E,18Z,21Z,24Z,27Z,30Z,33Z)-hexatriacontaheptaenoyl-CoA monarch-merged.owl owl:Class CHEBI:76688 biolink:NamedThing (18Z,21Z,24Z,27Z,30Z,33Z)-hexatriacontahexaenoyl-CoA monarch-merged.owl owl:Class CHEBI:88087 biolink:NamedThing (3S,7Z)-3-hydroxyhexadecenoyl-CoA monarch-merged.owl owl:Class CHEBI:33856 biolink:NamedThing aromatic amino acid An amino acid whose structure includes an aromatic ring. monarch-merged.owl aromatic amino acids|Aromatic amino acid 0 C2H4NO2R 88.085 74.02420 Wikipedia:Aromatic_amino_acid|KEGG:C01021 CHEBI:13820|CHEBI:2835|CHEBI:22623 chebi_ontology owl:Class CHEBI:16394 biolink:NamedThing N-methylanthranilic acid monarch-merged.owl owl:Class CHEBI:22495 biolink:NamedThing aminobenzoic acid monarch-merged.owl owl:Class CHEBI:24734 biolink:NamedThing hydroxyphenylalanine monarch-merged.owl owl:Class CHEBI:74959 biolink:NamedThing O(4)-phospho-D-tyrosine monarch-merged.owl owl:Class CHEBI:132274 biolink:NamedThing (14S,15R)-EET monarch-merged.owl owl:Class CHEBI:34157 biolink:NamedThing 14,15-EET monarch-merged.owl owl:Class CHEBI:132275 biolink:NamedThing (14R,15S)-EET monarch-merged.owl owl:Class CHEBI:132276 biolink:NamedThing (11S,12R)-EET monarch-merged.owl owl:Class CHEBI:34130 biolink:NamedThing 11,12-EET monarch-merged.owl owl:Class CHEBI:132277 biolink:NamedThing (11R,12S)-EET monarch-merged.owl owl:Class CHEBI:167116 biolink:NamedThing oxidized 1-acyl-sn-glycero-3-phosphocholine zwitterion monarch-merged.owl owl:Class CHEBI:132297 biolink:NamedThing methamphetamine(1+) monarch-merged.owl owl:Class CHEBI:142544 biolink:NamedThing tamsulosin(1+) monarch-merged.owl owl:Class CHEBI:142549 biolink:NamedThing ent-tamsulosin(1+) monarch-merged.owl owl:Class CHEBI:58855 biolink:NamedThing secondary aliphatic ammonium ion monarch-merged.owl owl:Class CHEBI:589779 biolink:NamedThing piperidinium The conjugate acid of piperidine; major species at pH 7.3. monarch-merged.owl piperidine|piperidinium cation|piperidinium|hexahydropyridinium|piperidinium(1+) owl:Class CHEBI:132302 biolink:NamedThing (8S,9R)-EET monarch-merged.owl owl:Class CHEBI:34490 biolink:NamedThing 8,9-EET monarch-merged.owl owl:Class CHEBI:132303 biolink:NamedThing (8R,9S)-EET monarch-merged.owl owl:Class CHEBI:132309 biolink:NamedThing S-butyryl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132310 biolink:NamedThing S-acyl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132311 biolink:NamedThing S-hexanoyl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132312 biolink:NamedThing S-octanoyl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132313 biolink:NamedThing S-decanoyl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132316 biolink:NamedThing S-dodecanoyl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132319 biolink:NamedThing S-tetradecanoyl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132320 biolink:NamedThing S-hexadecanoyl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132321 biolink:NamedThing S-choloyl-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:132322 biolink:NamedThing S-(3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl)-4'-phosphopantetheine monarch-merged.owl owl:Class CHEBI:16858 biolink:NamedThing pantetheine 4'-phosphate monarch-merged.owl owl:Class CHEBI:28228 biolink:NamedThing S-acetylphosphopantotheine monarch-merged.owl owl:Class CHEBI:134526 biolink:NamedThing S-(long-chain fatty acyl)-L-cysteine monarch-merged.owl owl:Class CHEBI:15880 biolink:NamedThing S-methyl 3-phospho-1-thio-D-glycerate monarch-merged.owl owl:Class CHEBI:17163 biolink:NamedThing S-methyl D-thioglycerate monarch-merged.owl owl:Class CHEBI:17853 biolink:NamedThing S-acetylcysteamine monarch-merged.owl owl:Class CHEBI:18126 biolink:NamedThing S-acylglutathione monarch-merged.owl owl:Class CHEBI:51280 biolink:NamedThing S-methyl thioacetate monarch-merged.owl methyl ethanethioate|thioacetic acid S-methyl ester|S-methyl ethanethioate|methyl thioacetate|methanethiol acetate|CH3C(O)SCH3|methylthioacetate|ethanethioic acid, S-methyl ester 0 C3H6OS InChI=1S/C3H6OS/c1-3(4)5-2/h1-2H3 OATSQCXMYKYFQO-UHFFFAOYSA-N 90.14514 90.01394 CSC(C)=O Beilstein:1736664|Gmelin:1316927|CAS:1534-08-3 CHEBI:38533|CHEBI:51279 chebi_ontology owl:Class CHEBI:132323 biolink:NamedThing 19-HETrE monarch-merged.owl owl:Class CHEBI:72793 biolink:NamedThing HETrE monarch-merged.owl owl:Class CHEBI:132325 biolink:NamedThing 21-HDoHE monarch-merged.owl owl:Class CHEBI:76937 biolink:NamedThing 11-hydroxylauric acid monarch-merged.owl owl:Class CHEBI:35343 biolink:NamedThing 17beta-hydroxy steroid A 17-hydroxy steroid in which the hydroxy group at position 17 has a beta-configuration. monarch-merged.owl 17beta-Hydroxysteroid|17beta-hydroxy steroids KEGG:C03051 CHEBI:19176|CHEBI:794 chebi_ontology owl:Class CHEBI:137110 biolink:NamedThing 17beta-hydroxy-5alpha-estr-1(10)-en-3-one monarch-merged.owl owl:Class CHEBI:137911 biolink:NamedThing 4-hydroxy-17beta-estradiol 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:16330 biolink:NamedThing 17beta-hydroxy-5alpha-androstan-3-one A 17beta-hydroxy steroid that is testosterone in which the 4,5 double bond has been reduced to a single bond with alpha-configuration at position 5. monarch-merged.owl dihydrotestosterone|17beta-Hydroxyandrostan-3-one|5alpha-DHT|4,5alpha-dihydrotestosterone|Stanolone|androstanolona|5alpha-Dihydrotestosterone|androstanolone|DIHYDROTESTOSTERONE|5alpha-dihydrotestosterone|Androstanolone|DHT|17beta-hydroxy-5alpha-androstan-3-one|androstanolonum|Dihydrotestosteron|17beta-hydroxyandrostan-3-one|17beta-Hydroxy-5alpha-androstan-3-one 0 C19H30O2 InChI=1S/C19H30O2/c1-18-9-7-13(20)11-12(18)3-4-14-15-5-6-17(21)19(15,2)10-8-16(14)18/h12,14-17,21H,3-11H2,1-2H3/t12-,14-,15-,16-,17-,18-,19-/m0/s1 NVKAWKQGWWIWPM-ABEVXSGRSA-N 290.44030 290.22458 [H][C@@]12CC[C@@]3([H])[C@]4([H])CC[C@H](O)[C@@]4(C)CC[C@]3([H])[C@@]1(C)CCC(=O)C2 KEGG:D07456|Drug_Central:3927|HMDB:HMDB0002961|PMID:15251265|CAS:521-18-6|MetaCyc:17-BETA-HYDROXY-5ALPHA-ANDROSTAN-3-O|PMID:15811352|PMID:18076420|LIPID_MAPS_instance:LMST02020042|KEGG:C03917|DrugBank:DB02901|PDBeChem:DHT|Wikipedia:Dihydrotestosterone CHEBI:19175|CHEBI:11342|CHEBI:11341|CHEBI:793|CHEBI:41876 chebi_ontology owl:Class CHEBI:16469 biolink:NamedThing 17beta-estradiol The 17beta-isomer of estradiol. monarch-merged.owl 17beta-oestradiol|beta-Estradiol|17beta-estra-1,3,5(10)-triene-3,17-diol|Estradiol-17beta|ESTRADIOL|17beta-estradiol|estra-1,3,5(10)-triene-3,17beta-diol|Estradiol|17beta oestradiol|(17beta)-estra-1,3,5(10)-triene-3,17-diol|cis-estradiol 0 C18H24O2 InChI=1S/C18H24O2/c1-18-9-8-14-13-5-3-12(19)10-11(13)2-4-15(14)16(18)6-7-17(18)20/h3,5,10,14-17,19-20H,2,4,6-9H2,1H3/t14-,15-,16+,17+,18+/m1/s1 VOXZDWNPVJITMN-ZBRFXRBCSA-N 272.38200 272.17763 [H][C@]12CC[C@]3(C)[C@@H](O)CC[C@@]3([H])[C@]1([H])CCc1cc(O)ccc21 Gmelin:290805|KEGG:D00105|Drug_Central:1057|DrugBank:DB00783|LINCS:LSM-2421|PMID:24449492|PDBeChem:EST|PMID:3621671|Reaxys:1914275|PMID:14681337|HMDB:HMDB0000151|Beilstein:1914275|LIPID_MAPS_instance:LMST02010001|PMID:10438974|Wikipedia:Estradiol|KEGG:C00951|PMID:23901460|CAS:50-28-2 CHEBI:4864|CHEBI:23963|CHEBI:42475|CHEBI:14219 chebi_ontology owl:Class CHEBI:18011 biolink:NamedThing androstane-3alpha,17beta-diol monarch-merged.owl owl:Class CHEBI:18329 biolink:NamedThing 5alpha-androstane-3beta,17beta-diol monarch-merged.owl owl:Class CHEBI:34584 biolink:NamedThing boldenone monarch-merged.owl owl:Class CHEBI:36489 biolink:NamedThing 17beta-estradiol 3-glucosiduronic acid monarch-merged.owl owl:Class CHEBI:45869 biolink:NamedThing estriol 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:7466 biolink:NamedThing nandrolone monarch-merged.owl owl:Class CHEBI:798 biolink:NamedThing 19-hydroxytestosterone monarch-merged.owl owl:Class CHEBI:85278 biolink:NamedThing 17beta-hydroxyandrostan-3-one A 17beta-hydroxy steroid that is testosterone in which the 4-5 double bond has been reduced to a single bond with unspecified configuration at position 5. monarch-merged.owl (17beta)-17-hydroxyandrostan-3-one|17beta-hydroxyandrostanone|dihydrotestosterone 0 C19H30O2 InChI=1S/C19H30O2/c1-18-9-7-13(20)11-12(18)3-4-14-15-5-6-17(21)19(15,2)10-8-16(14)18/h12,14-17,21H,3-11H2,1-2H3/t12?,14-,15-,16-,17-,18-,19-/m0/s1 NVKAWKQGWWIWPM-QHDNXLQLSA-N 290.44030 290.22458 C[C@]12CC[C@H]3[C@@H](CCC4CC(=O)CC[C@]34C)[C@@H]1CC[C@@H]2O CAS:29873-50-5 chebi_ontology owl:Class CHEBI:87331 biolink:NamedThing 17beta-hydroxy-5beta-androst-1-en-3-one monarch-merged.owl owl:Class CHEBI:87333 biolink:NamedThing 17beta-hydroxy-5beta-estran-3-one monarch-merged.owl owl:Class CHEBI:13601 biolink:NamedThing 3-oxo-5alpha-steroid A 3-oxo steroid that has alpha configuration at position 5. monarch-merged.owl a 3-oxo-5alpha-steroid|3-oxo 5alpha-steroids|3-oxo 5alpha- steroid|3-oxo 5alpha- steroids 0 C19H29OR 273.434 273.22184 C12C(C3C(C(CC3)*)(C)CC1)CC[C@@]4(C2(CCC(C4)=O)C)[H] KEGG:C02940|MetaCyc:3-Oxo-5-Alpha-Steroids CHEBI:20150|CHEBI:1622 chebi_ontology owl:Class CHEBI:1624 biolink:NamedThing 3-oxo-5beta-steroid monarch-merged.owl owl:Class CHEBI:16485 biolink:NamedThing 18-hydroxycorticosterone monarch-merged.owl owl:Class CHEBI:18534 biolink:NamedThing campest-4-en-3-one monarch-merged.owl owl:Class CHEBI:23736 biolink:NamedThing 4,5-dihydrocortisone monarch-merged.owl owl:Class CHEBI:47907 biolink:NamedThing 3-oxo-Delta(5)-steroid monarch-merged.owl owl:Class CHEBI:52386 biolink:NamedThing zymosterol intermediate 2 monarch-merged.owl owl:Class CHEBI:71598 biolink:NamedThing 3-oxo Delta(7)-steroid monarch-merged.owl owl:Class CHEBI:71017 biolink:NamedThing 1-hydroxy steroid monarch-merged.owl owl:Class CHEBI:132362 biolink:NamedThing citrate(4-) A citrate anion obtained by deprotonation of the three carboxy groups as well as the hydroxy group of citric acid. monarch-merged.owl citric acid tetraanion|2-oxidopropane-1,2,3-tricarboxylate|2-oxido-1,2,3-propanetricarboxylate -4 C6H4O7 InChI=1S/C6H7O7/c7-3(8)1-6(13,5(11)12)2-4(9)10/h1-2H2,(H,7,8)(H,9,10)(H,11,12)/q-1/p-3 KSXLKRAZYZIYCZ-UHFFFAOYSA-K 188.092 187.99790 C(=O)([O-])C(CC(=O)[O-])(CC(=O)[O-])[O-] Chemspider:34552020 chebi_ontology owl:Class CHEBI:35804 biolink:NamedThing citrate(1-) A tricarboxylic acid monoanion that is the conjugate base of citric acid, obtained by deprotonation of one of the three carboxy groups. monarch-merged.owl H2cit|dihydrogen citrate|H2cit(-) -1 C6H7O7 191.11558 191.01918 chebi_ontology owl:Class CHEBI:132365 biolink:NamedThing EC 1.14.11.2 (procollagen-proline dioxygenase) inhibitor monarch-merged.owl owl:Class CHEBI:76902 biolink:NamedThing EC 1.14.11.* (oxidoreductase acting on paired donors, 2-oxoglutarate as one donor, incorporating 1 atom each of oxygen into both donors) inhibitor monarch-merged.owl owl:Class CHEBI:132449 biolink:NamedThing wax ester 36:1 monarch-merged.owl owl:Class CHEBI:138721 biolink:NamedThing tetradecyl tetradecanoate monarch-merged.owl owl:Class CHEBI:75608 biolink:NamedThing 2-palmitoyloxypalmityl palmitate monarch-merged.owl owl:Class CHEBI:75620 biolink:NamedThing decyl oleate monarch-merged.owl owl:Class CHEBI:75622 biolink:NamedThing palmityl oleate monarch-merged.owl owl:Class CHEBI:75624 biolink:NamedThing palmitoleyl oleate monarch-merged.owl owl:Class CHEBI:75626 biolink:NamedThing oleyl oleate monarch-merged.owl owl:Class CHEBI:75628 biolink:NamedThing arachidyl oleate monarch-merged.owl owl:Class CHEBI:75629 biolink:NamedThing palmityl palmitoleate monarch-merged.owl owl:Class CHEBI:75631 biolink:NamedThing palmityl stearate monarch-merged.owl owl:Class CHEBI:84059 biolink:NamedThing octyl palmitate monarch-merged.owl owl:Class CHEBI:84062 biolink:NamedThing nonyl palmitate monarch-merged.owl owl:Class CHEBI:84063 biolink:NamedThing decyl palmitate monarch-merged.owl owl:Class CHEBI:84064 biolink:NamedThing myristyl palmitate monarch-merged.owl owl:Class CHEBI:84065 biolink:NamedThing arachidyl palmitate monarch-merged.owl owl:Class CHEBI:84066 biolink:NamedThing stearyl palmitate monarch-merged.owl owl:Class CHEBI:84072 biolink:NamedThing hexadecyl elaidate monarch-merged.owl owl:Class CHEBI:84080 biolink:NamedThing palmityl laurate monarch-merged.owl owl:Class CHEBI:33551 biolink:NamedThing organosulfonic acid An organic derivative of sulfonic acid in which the sulfo group is linked directly to carbon. monarch-merged.owl sulfonic acids|organosulfonic acids 0 HO3SR 81.07100 80.96464 OS([*])(=O)=O chebi_ontology owl:Class CHEBI:16461 biolink:NamedThing tauropine monarch-merged.owl owl:Class CHEBI:17228 biolink:NamedThing taurocyamine monarch-merged.owl owl:Class CHEBI:17717 biolink:NamedThing sulfoacetaldehyde monarch-merged.owl owl:Class CHEBI:17905 biolink:NamedThing coenzyme M monarch-merged.owl owl:Class CHEBI:23356 biolink:NamedThing S-substituted coenzyme M monarch-merged.owl owl:Class CHEBI:28947 biolink:NamedThing (5-oxo-2-sulfo-2,5-dihydrofuran-2-yl)acetic acid monarch-merged.owl owl:Class CHEBI:33555 biolink:NamedThing arenesulfonic acid monarch-merged.owl owl:Class CHEBI:37793 biolink:NamedThing amino sulfonic acid An organosulfonic acid containing one or more amino groups. monarch-merged.owl aminosulfonic acids|aminosulfonic acid|amino sulfonic acids chebi_ontology owl:Class CHEBI:38029 biolink:NamedThing carbohydrate sulfonate monarch-merged.owl owl:Class CHEBI:38031 biolink:NamedThing carboxyalkanesulfonic acid monarch-merged.owl owl:Class CHEBI:132475 biolink:NamedThing N-dodecanoyltaurine monarch-merged.owl owl:Class CHEBI:132476 biolink:NamedThing N-tetradecanoyltaurine monarch-merged.owl owl:Class CHEBI:132477 biolink:NamedThing N-hexadecanoyltaurine monarch-merged.owl owl:Class CHEBI:132479 biolink:NamedThing N-stearoyltaurine monarch-merged.owl owl:Class CHEBI:132480 biolink:NamedThing N-icosanoyltaurine monarch-merged.owl owl:Class CHEBI:132505 biolink:NamedThing N-tetracosanoyltaurine monarch-merged.owl owl:Class CHEBI:132506 biolink:NamedThing N-arachidonoyltaurine monarch-merged.owl owl:Class CHEBI:132507 biolink:NamedThing N-[12(S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]taurine monarch-merged.owl owl:Class CHEBI:132508 biolink:NamedThing N-[15(S)-hydroperoxy-(5Z,8Z,11Z,13E)-icosatetraenoyl]taurine monarch-merged.owl owl:Class CHEBI:13248 biolink:NamedThing anilide monarch-merged.owl owl:Class CHEBI:22712 biolink:NamedThing benzenes Any benzenoid aromatic compound consisting of the benzene skeleton and its substituted derivatives. monarch-merged.owl chebi_ontology owl:Class CHEBI:136829 biolink:NamedThing 1-aci-nitro-2-(phenyl)ethane monarch-merged.owl owl:Class CHEBI:137674 biolink:NamedThing benzyl thiol monarch-merged.owl owl:Class CHEBI:137675 biolink:NamedThing thiobenzaldehyde monarch-merged.owl owl:Class CHEBI:140310 biolink:NamedThing phenyl acetates An acetate ester obtained by formal condensation of the carboxy group of acetic acid with the hydroxy group of any phenol. monarch-merged.owl phenyl acetate derivatives|a phenyl acetate|phenyl acetate derivative owl:Class CHEBI:16716 biolink:NamedThing benzene A six-carbon aromatic annulene in which each carbon atom donates one of its two 2p electrons into a delocalised pi system. A toxic, flammable liquid byproduct of coal distillation, it is used as an industrial solvent. Benzene is a carcinogen that also damages bone marrow and the central nervous system. monarch-merged.owl benzole|BENZENE|Benzine|Pyrobenzol|Coal naphtha|Pyrobenzole|Bicarburet of hydrogen|[6]annulene|Mineral naphtha|phenyl hydride|cyclohexatriene|Phene|benzene|Benzene|Benzol|Benzen 0 C6H6 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N 78.11184 78.04695 c1ccccc1 KEGG:C01407|PMID:14677922|PMID:11993966|PMID:12857942|PMID:18836923|Wikipedia:Benzene|Beilstein:969212|Gmelin:1671|PMID:21325737|HMDB:HMDB0001505|PMID:6353911|PMID:17373369|PMID:15935818|PMID:18409691|PMID:23222815|PMID:23534829|PMID:18407866|PDBeChem:BNZ|PMID:16161967|PMID:19228219|PMID:23088855|PMID:11684179|UM-BBD_compID:c0142|PMID:18072742|CAS:71-43-2|PMID:8124204|Reaxys:969212|PMID:15468289 CHEBI:41187|CHEBI:22703|CHEBI:13876|CHEBI:3025 chebi_ontology owl:Class CHEBI:17097 biolink:NamedThing biphenyl monarch-merged.owl owl:Class CHEBI:17127 biolink:NamedThing glucotropeolin monarch-merged.owl owl:Class CHEBI:22562 biolink:NamedThing anilines Any aromatic amine that is benzene carrying at least one amino substituent and its substituted derivatives. monarch-merged.owl chebi_ontology owl:Class CHEBI:22682 biolink:NamedThing azobenzenes monarch-merged.owl owl:Class CHEBI:22723 biolink:NamedThing benzoic acids Any aromatic carboxylic acid that consists of benzene in which at least a single hydrogen has been substituted by a carboxy group. monarch-merged.owl owl:Class CHEBI:25979 biolink:NamedThing phenylacetonitrile monarch-merged.owl owl:Class CHEBI:27024 biolink:NamedThing toluenes Any member of the class of benzenes that is a substituted benzene in which the substituents include one (and only one) methyl group. monarch-merged.owl chebi_ontology owl:Class CHEBI:27684 biolink:NamedThing phenylmercury acetate monarch-merged.owl owl:Class CHEBI:27986 biolink:NamedThing nitrosobenzene monarch-merged.owl owl:Class CHEBI:27991 biolink:NamedThing benzonitrile monarch-merged.owl owl:Class CHEBI:28064 biolink:NamedThing cyanidin 3-O-rutinoside monarch-merged.owl owl:Class CHEBI:35484 biolink:NamedThing phthalate ester monarch-merged.owl owl:Class CHEBI:37149 biolink:NamedThing bromobenzenes monarch-merged.owl owl:Class CHEBI:38976 biolink:NamedThing alkylbenzene A monocyclic arene that is benzene substituted with one or more alkyl groups. monarch-merged.owl alkylbenzenes|Alkylbenzol|alkylbenzene chebi_ontology owl:Class CHEBI:48109 biolink:NamedThing nitrobenzenes monarch-merged.owl owl:Class CHEBI:8058 biolink:NamedThing phencyclidine A member of the class of piperidines that is piperidine in which the nitrogen is substituted with a 1-phenylcyclohexyl group. Formerly used as an anaesthetic agent, it exhibits both hallucinogenic and neurotoxic effects. monarch-merged.owl PCP|1-(1-phenylcyclohexyl)piperidine|Phencyclidine|phencyclidinum|phencyclidine|fenciclidina owl:Class CHEBI:85426 biolink:NamedThing 3-phenylpropionitrile monarch-merged.owl owl:Class CHEBI:62733 biolink:NamedThing aromatic amide monarch-merged.owl owl:Class CHEBI:3015 biolink:NamedThing benomyl monarch-merged.owl owl:Class CHEBI:48536 biolink:NamedThing amidopyrimidine monarch-merged.owl owl:Class CHEBI:132499 biolink:NamedThing fatty acid 16:3 monarch-merged.owl owl:Class CHEBI:132502 biolink:NamedThing fatty acid 18:3 monarch-merged.owl owl:Class CHEBI:36971 biolink:NamedThing dodecatrienoic acid monarch-merged.owl owl:Class CHEBI:48905 biolink:NamedThing (9Z,11E,13S,15Z)-13-hydroperoxyoctadeca-9,11,15-trienoic acid monarch-merged.owl owl:Class CHEBI:132510 biolink:NamedThing alpha-D-Man-(1->3)-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61935 biolink:NamedThing alpha-D-Man-(1->3)-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132511 biolink:NamedThing alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61937 biolink:NamedThing alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132515 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61942 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132516 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61943 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132517 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61944 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132519 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61945 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132520 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61946 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132521 biolink:NamedThing alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61947 biolink:NamedThing alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132522 biolink:NamedThing alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61948 biolink:NamedThing alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132523 biolink:NamedThing alpha-D-Glc-(1->2)-alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:61949 biolink:NamedThing alpha-D-Glc-(1->2)-alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol)(2-) monarch-merged.owl owl:Class CHEBI:132537 biolink:NamedThing N(4)-(alpha-D-Glc-(1->2)-alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc)-L-asparaginyl residue monarch-merged.owl owl:Class CHEBI:26607 biolink:NamedThing saturated fatty acid Any fatty acid containing no carbon to carbon multiple bonds. Known to produce adverse biological effects when ingested to excess. monarch-merged.owl saturated fatty acids|SFAs|saturated fatty acid|SFA PMID:19763019|PMID:20237329|PMID:16492686 chebi_ontology owl:Class CHEBI:26666 biolink:NamedThing short-chain fatty acid An aliphatic monocarboxylic acid with a chain length of less than C6. If any non-hydrocarbon substituent is present, the compound is not normally regarded as a short-chain fatty acid. monarch-merged.owl SCFA|SCFAs|short-chain fatty acids 0 CH2OR 45.017 44.99765 OC([*])=O PMID:20148677|PMID:18203540|PMID:16633129|PMID:16870803 chebi_ontology owl:Class CHEBI:27208 biolink:NamedThing unsaturated fatty acid Any fatty acid containing at least one C=C or C#C bond. monarch-merged.owl alkene acid|unsaturated fatty acids|olefinic acid LIPID_MAPS_class:LMFA0103|PMID:5322381 chebi_ontology owl:Class CHEBI:27283 biolink:NamedThing very long-chain fatty acid A fatty acid which has a chain length greater than C22. Very long-chain fatty acids which have a chain length greater than C27 are also known as ultra-long-chain fatty acids. monarch-merged.owl very long-chain fatty acids|VLCFAs|VLCFA|higher fatty acid 0 CH2OR 45.017 44.99765 OC([*])=O LIPID_MAPS_instance:LMFA01010025 chebi_ontology owl:Class CHEBI:35819 biolink:NamedThing branched-chain fatty acid Any fatty acid in which the parent hydrocarbon chain has one or more alkyl substituents; a common component in animal and bacterial lipids. The fatty acyl chain is usually saturated and the substituent a methyl group; however, unsaturated BCFAs are found in marine animals, and branches other than methyl are found in microbial lipids. monarch-merged.owl BCFA|branched fatty acids|branched fatty acid|Branched chain fatty acid|branched-chain fatty acids|BCFAs PMID:18318842|KEGG:C05996 CHEBI:3166|CHEBI:22919 chebi_ontology owl:Class CHEBI:59202 biolink:NamedThing straight-chain fatty acid Any fatty acid whose skeletal carbon atoms form an unbranched open chain. monarch-merged.owl straight-chain fatty acids chebi_ontology owl:Class CHEBI:59238 biolink:NamedThing cyclic fatty acid Any fatty acid containing anywhere in its structure a ring of atoms. monarch-merged.owl cyclic fatty acids|acides gras cycliques|zyklische Fettsaeuren|acidos grasos ciclicos PMID:17113094|PMID:9300789 chebi_ontology owl:Class CHEBI:59554 biolink:NamedThing medium-chain fatty acid Any fatty acid with a chain length of between C6 and C12. monarch-merged.owl MCFAs|MCFA|medium-chain fatty acids 0 CHO2R 45.01740 44.99765 OC([*])=O chebi_ontology owl:Class CHEBI:59643 biolink:NamedThing thia fatty acid monarch-merged.owl owl:Class CHEBI:59913 biolink:NamedThing thio-fatty acid monarch-merged.owl owl:Class CHEBI:60690 biolink:NamedThing nitrogen-containing fatty acid monarch-merged.owl owl:Class CHEBI:61121 biolink:NamedThing oxylipin monarch-merged.owl owl:Class CHEBI:61410 biolink:NamedThing oxa fatty acid monarch-merged.owl owl:Class CHEBI:64009 biolink:NamedThing hydroperoxy fatty acid Any fatty acid carrying one or more hydroperoxy substituents. monarch-merged.owl hydroperoxy fatty acids chebi_ontology owl:Class CHEBI:76929 biolink:NamedThing 2,3-saturated fatty acid Any fatty acid in which the first two carbons of the chain attached to the carboxy group are saturated and unbranched. monarch-merged.owl 0 C3H5O2R 73.071 73.02895 OC(=O)CC[*] chebi_ontology owl:Class CHEBI:132554 biolink:NamedThing oligomer monarch-merged.owl owl:Class CHEBI:25367 biolink:NamedThing molecule Any polyatomic entity that is an electrically neutral entity consisting of more than one atom. monarch-merged.owl neutral molecular compounds|molecula|molecule|Molekuel|molecules chebi_ontology owl:Class CHEBI:25362 biolink:NamedThing elemental molecule A molecule all atoms of which have the same atomic number. monarch-merged.owl homoatomic molecule|homoatomic molecules chebi_ontology owl:Class CHEBI:33595 biolink:NamedThing cyclic compound Any molecule that consists of a series of atoms joined together to form a ring. monarch-merged.owl cyclic compounds Wikipedia:Cyclic_compound chebi_ontology owl:Class CHEBI:132561 biolink:NamedThing PE(O-18:1/0:0) monarch-merged.owl owl:Class CHEBI:136142 biolink:NamedThing lysophosphatidylethanolamine O-18:1 monarch-merged.owl owl:Class CHEBI:132562 biolink:NamedThing lysophosphatidylethanolamine O-34:4 monarch-merged.owl owl:Class CHEBI:18244 biolink:NamedThing 1-alkyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:72824 biolink:NamedThing 1-(Z-alk-1-enyl)-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:79283 biolink:NamedThing 1-hexadecyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:132564 biolink:NamedThing phosphatidic acid 14:0 monarch-merged.owl owl:Class CHEBI:16337 biolink:NamedThing phosphatidic acid monarch-merged.owl owl:Class CHEBI:132565 biolink:NamedThing phosphatidic acid 16:0 monarch-merged.owl owl:Class CHEBI:132567 biolink:NamedThing phosphatidic acid 18:0 monarch-merged.owl owl:Class CHEBI:132568 biolink:NamedThing phosphatidic acid 37:0 monarch-merged.owl owl:Class CHEBI:134236 biolink:NamedThing phosphatidic acid (16:0/18:1) monarch-merged.owl owl:Class CHEBI:134237 biolink:NamedThing phosphatidic acid 36:2 monarch-merged.owl owl:Class CHEBI:134288 biolink:NamedThing phosphatidic acid 18:3 monarch-merged.owl owl:Class CHEBI:137103 biolink:NamedThing phosphatidic acid 32:7 monarch-merged.owl owl:Class CHEBI:137164 biolink:NamedThing phosphatidic acid 36:3 monarch-merged.owl owl:Class CHEBI:137449 biolink:NamedThing phosphatidic acid 30:1 monarch-merged.owl owl:Class CHEBI:137849 biolink:NamedThing phosphatidic acid 32:5 monarch-merged.owl owl:Class CHEBI:137890 biolink:NamedThing phosphatidic acid 38:0 monarch-merged.owl owl:Class CHEBI:137891 biolink:NamedThing phosphatidic acid 39:1 monarch-merged.owl owl:Class CHEBI:137892 biolink:NamedThing phosphatidic acid 39:2 monarch-merged.owl owl:Class CHEBI:137893 biolink:NamedThing phosphatidic acid 40:2 monarch-merged.owl owl:Class CHEBI:137894 biolink:NamedThing phosphatidic acid 41:1 monarch-merged.owl owl:Class CHEBI:137895 biolink:NamedThing phosphatidic acid 41:2 monarch-merged.owl owl:Class CHEBI:137896 biolink:NamedThing phosphatidic acid 41:3 monarch-merged.owl owl:Class CHEBI:137897 biolink:NamedThing phosphatidic acid 41:5 monarch-merged.owl owl:Class CHEBI:137898 biolink:NamedThing phosphatidic acid 43:5 monarch-merged.owl owl:Class CHEBI:137899 biolink:NamedThing phosphatidic acid 44:6 monarch-merged.owl owl:Class CHEBI:138905 biolink:NamedThing phosphatidic acid 36:4 monarch-merged.owl owl:Class CHEBI:140353 biolink:NamedThing phosphatidic acid 40:6 monarch-merged.owl owl:Class CHEBI:140354 biolink:NamedThing phosphatidic acid 38:4 monarch-merged.owl owl:Class CHEBI:29089 biolink:NamedThing 1,2-diacyl-sn-glycerol 3-phosphate monarch-merged.owl owl:Class CHEBI:83774 biolink:NamedThing 1,2-dioctadecanoyl-sn-glycerol-3-phosphate monarch-merged.owl owl:Class CHEBI:90458 biolink:NamedThing PA(18:0/22:4) monarch-merged.owl owl:Class CHEBI:132570 biolink:NamedThing O-(S-[2R,4R,6R]-2,4,6-trimethyl-very-long-chain fatty acyl-pantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:64479 biolink:NamedThing O-(pantetheine-4'-phosphoryl)serine(1-) residue monarch-merged.owl owl:Class CHEBI:15365 biolink:NamedThing acetylsalicylic acid A member of the class of benzoic acids that is salicylic acid in which the hydrogen that is attached to the phenolic hydroxy group has been replaced by an acetoxy group. A non-steroidal anti-inflammatory drug with cyclooxygenase inhibitor activity. monarch-merged.owl Acetylsalicylate|Acetylsalicylsaeure|acidum acetylsalicylicum|Azetylsalizylsaeure|2-(ACETYLOXY)BENZOIC ACID|o-acetoxybenzoic acid|Easprin|2-(acetyloxy)benzoic acid|acide acetylsalicylique|ASA|acide 2-(acetyloxy)benzoique|O-acetylsalicylic acid|2-acetoxybenzoic acid|2-Acetoxybenzenecarboxylic acid|o-carboxyphenyl acetate|Acetylsalicylic acid|salicylic acid acetate|acido acetilsalicilico|Aspirin owl:Class CHEBI:23134 biolink:NamedThing chlorobenzoic acid monarch-merged.owl owl:Class CHEBI:23412 biolink:NamedThing cumic acid monarch-merged.owl owl:Class CHEBI:25238 biolink:NamedThing methoxybenzoic acid monarch-merged.owl owl:Class CHEBI:25280 biolink:NamedThing methylbenzoic acid monarch-merged.owl owl:Class CHEBI:26825 biolink:NamedThing sulfobenzoic acid monarch-merged.owl owl:Class CHEBI:30746 biolink:NamedThing benzoic acid A compound comprising a benzene ring core carrying a carboxylic acid substituent. monarch-merged.owl Benzenemethanoic acid|Benzenecarboxylic acid|Phenylcarboxylic acid|BENZOIC ACID|Benzeneformic acid|Phenylformic acid|Aromatic carboxylic acid|Dracylic acid|benzoic acid|E210|acide benzoique|Benzoic acid|Benzoesaeure owl:Class CHEBI:48948 biolink:NamedThing demethylsulochrin monarch-merged.owl owl:Class CHEBI:51312 biolink:NamedThing dehypoxanthine futalosine monarch-merged.owl owl:Class CHEBI:64252 biolink:NamedThing cyclic dehypoxanthinylfutalosine monarch-merged.owl owl:Class CHEBI:64921 biolink:NamedThing 3,4-dihydroxy-5-polyprenylbenzoic acid monarch-merged.owl owl:Class CHEBI:70862 biolink:NamedThing 2-halobenzoic acid monarch-merged.owl owl:Class CHEBI:17747 biolink:NamedThing bis(2-ethylhexyl) phthalate monarch-merged.owl owl:Class CHEBI:34687 biolink:NamedThing dibutyl phthalate monarch-merged.owl owl:Class CHEBI:60819 biolink:NamedThing diphenyl phthalate monarch-merged.owl owl:Class CHEBI:132623 biolink:NamedThing nodakenetin monarch-merged.owl owl:Class CHEBI:6695 biolink:NamedThing (+)-marmesin monarch-merged.owl owl:Class CHEBI:132671 biolink:NamedThing (12S)-hydroperoxy-(14R,15S)-epoxy-(5Z,8Z,10E)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:132681 biolink:NamedThing (12S)-hydroperoxy-(14S,15R)-epoxy-(5Z,8Z,10E)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:132683 biolink:NamedThing (5S)-hydroperoxy-(14R,15S)-epoxy-(6E,8Z,11Z)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:132808 biolink:NamedThing (8S)-hydroperoxy-(14S,15R)-epoxy-(5Z,9E,11Z)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:36326 biolink:NamedThing octadecanoid Unsaturated C18 fatty acids and skeletally related compounds. monarch-merged.owl octadecanoids chebi_ontology owl:Class CHEBI:15658 biolink:NamedThing 7(S),8(S)-DiHODE monarch-merged.owl owl:Class CHEBI:167055 biolink:NamedThing Jasmonate derivatives monarch-merged.owl owl:Class CHEBI:34485 biolink:NamedThing 8(R)-HPODE monarch-merged.owl owl:Class CHEBI:36329 biolink:NamedThing HPODE Hydroperoxy-octadecadienoic acids, formed in mammalian cells by peroxidation of linoleic acid. monarch-merged.owl HPODEs PMID:23680403 chebi_ontology owl:Class CHEBI:63216 biolink:NamedThing 5(S),8(R)-DiHODE monarch-merged.owl owl:Class CHEBI:132684 biolink:NamedThing phosphatidylglycerol 13:0 monarch-merged.owl owl:Class CHEBI:17517 biolink:NamedThing phosphatidylglycerol monarch-merged.owl owl:Class CHEBI:132685 biolink:NamedThing phosphatidylglycerol 36:0 monarch-merged.owl owl:Class CHEBI:132686 biolink:NamedThing phosphatidylglycerol 37:0 monarch-merged.owl owl:Class CHEBI:132687 biolink:NamedThing phosphatidylglycerol 38:1 monarch-merged.owl owl:Class CHEBI:134448 biolink:NamedThing phosphatidylglycerol 38:4 monarch-merged.owl owl:Class CHEBI:136220 biolink:NamedThing phosphatidylglycerol 32:1 monarch-merged.owl owl:Class CHEBI:137195 biolink:NamedThing phosphatidylglycerol 43:6 monarch-merged.owl owl:Class CHEBI:137198 biolink:NamedThing phosphatidylglycerol 37:4 monarch-merged.owl owl:Class CHEBI:145833 biolink:NamedThing phosphatidylglycerol 27:2 monarch-merged.owl owl:Class CHEBI:156029 biolink:NamedThing phosphatidylglycerol 38:6 monarch-merged.owl owl:Class CHEBI:156030 biolink:NamedThing phosphatidylglycerol 40:5 monarch-merged.owl owl:Class CHEBI:156031 biolink:NamedThing phosphatidylglycerol 40:6 monarch-merged.owl owl:Class CHEBI:156033 biolink:NamedThing phosphatidylglycerol 38:2 monarch-merged.owl owl:Class CHEBI:156034 biolink:NamedThing phosphatidylglycerol 38:3 monarch-merged.owl owl:Class CHEBI:156035 biolink:NamedThing phosphatidylglycerol 38:5 monarch-merged.owl owl:Class CHEBI:156036 biolink:NamedThing phosphatidylglycerol 40:7 monarch-merged.owl owl:Class CHEBI:156037 biolink:NamedThing phosphatidylglycerol 42:8 monarch-merged.owl owl:Class CHEBI:156039 biolink:NamedThing phosphatidylglycerol 44:12 monarch-merged.owl owl:Class CHEBI:17264 biolink:NamedThing phosphatidylglycerol phosphate monarch-merged.owl owl:Class CHEBI:17511 biolink:NamedThing 3-O-L-alanyl-1-O-phosphatidylglycerol monarch-merged.owl owl:Class CHEBI:28494 biolink:NamedThing cardiolipin monarch-merged.owl owl:Class CHEBI:29039 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phospho-1'-(3'-O-L-lysyl)-sn-glycerol monarch-merged.owl owl:Class CHEBI:34080 biolink:NamedThing 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol monarch-merged.owl owl:Class CHEBI:60291 biolink:NamedThing L-alpha-phosphatidylglycerol monarch-merged.owl owl:Class CHEBI:60430 biolink:NamedThing 2-monolysocardiolipin monarch-merged.owl owl:Class CHEBI:60431 biolink:NamedThing 2,2'-dilysocardiolipin monarch-merged.owl owl:Class CHEBI:60724 biolink:NamedThing dipalmitoyl phosphatidylglycerol monarch-merged.owl owl:Class CHEBI:64961 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) monarch-merged.owl owl:Class CHEBI:65106 biolink:NamedThing 1-monolysocardiolipin monarch-merged.owl owl:Class CHEBI:132708 biolink:NamedThing N-arachidonoyl-L-alanine monarch-merged.owl owl:Class CHEBI:132736 biolink:NamedThing N-[(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]alanine monarch-merged.owl owl:Class CHEBI:132746 biolink:NamedThing N-[(15S)-hydroperoxy-(5Z,8Z,11Z,13E)-icosatetraenoyl]alanine monarch-merged.owl owl:Class CHEBI:136614 biolink:NamedThing N-oleoyl-L-serine monarch-merged.owl owl:Class CHEBI:136615 biolink:NamedThing N-oleoyl-L-glutamine monarch-merged.owl owl:Class CHEBI:136616 biolink:NamedThing N-oleoyl-L-leucine monarch-merged.owl owl:Class CHEBI:136683 biolink:NamedThing N-arachidonoyl-L-leucine monarch-merged.owl owl:Class CHEBI:136711 biolink:NamedThing N-oleoyl-L-isoleucine monarch-merged.owl owl:Class CHEBI:136713 biolink:NamedThing N-oleoyl-L-glutamic acid monarch-merged.owl owl:Class CHEBI:137541 biolink:NamedThing N-propanoyl-L-methionine monarch-merged.owl owl:Class CHEBI:21745 biolink:NamedThing N-(long-chain-fatty-acyl)-L-glutamic acid monarch-merged.owl owl:Class CHEBI:132717 biolink:NamedThing bleaching agent A reagent that lightens or whitens a substrate through chemical reaction. Bleaching reactions usually involve oxidative or reductive processes that degrade colour systems. Bleaching can occur by destroying one or more of the double bonds in the conjugated chain, by cleaving the conjugated chain, or by oxidation of one of the other moieties in the conjugated chain. Their reactivity results in many bleaches having strong bactericidal, disinfecting, and sterilising properties. monarch-merged.owl Wikipedia:Bleach chebi_ontology owl:Class CHEBI:33893 biolink:NamedThing reagent A substance used in a chemical reaction to detect, measure, examine, or produce other substances. monarch-merged.owl reagent|reagents|reactif|reactivo chebi_ontology owl:Class CHEBI:50684 biolink:NamedThing cross-linking reagent monarch-merged.owl owl:Class CHEBI:59739 biolink:NamedThing electrophilic reagent monarch-merged.owl owl:Class CHEBI:59740 biolink:NamedThing nucleophilic reagent A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons. monarch-merged.owl nucleophiles|nucleophilic reagents|nucleophile chebi_ontology owl:Class CHEBI:132740 biolink:NamedThing N-[(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]-gamma-aminobutanoic acid monarch-merged.owl owl:Class CHEBI:132747 biolink:NamedThing N-[(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]-gamma-aminobutyric acid monarch-merged.owl owl:Class CHEBI:132725 biolink:NamedThing N-[(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-icosatetraenoyl]glycine monarch-merged.owl owl:Class CHEBI:132738 biolink:NamedThing N-[(15S)-hydroperoxy-(5Z,8Z,11Z,13E)-icosatetraenoyl]glycine monarch-merged.owl owl:Class CHEBI:134150 biolink:NamedThing N-acylglycine 16:1 monarch-merged.owl owl:Class CHEBI:134151 biolink:NamedThing N-acylglycine 18:0 monarch-merged.owl owl:Class CHEBI:134152 biolink:NamedThing N-acylglycine 18:1 monarch-merged.owl owl:Class CHEBI:16532 biolink:NamedThing N-benzyloxycarbonylglycine monarch-merged.owl owl:Class CHEBI:17691 biolink:NamedThing N-feruloylglycine monarch-merged.owl owl:Class CHEBI:18089 biolink:NamedThing N-benzoylglycine An N-acylglycine in which the acyl group is specified as benzoyl. monarch-merged.owl Benzoylaminoessigsaeure|Phenylcarbonylaminoacetic acid|Hippurate|N-Benzoylglycine|Benzamidoessigsaeure|Hippursaeure|Hippuric acid|N-benzoylglycine|Benzoylaminoacetic acid|Benzamidoacetic acid 0 C9H9NO3 InChI=1S/C9H9NO3/c11-8(12)6-10-9(13)7-4-2-1-3-5-7/h1-5H,6H2,(H,10,13)(H,11,12) QIAFMBKCNZACKA-UHFFFAOYSA-N 179.17270 179.05824 OC(=O)CNC(=O)c1ccccc1 PMID:15879000|PMID:9120876|MetaCyc:CPD-425|PMID:19891605|Wikipedia:Hippuric_acid|PMID:7153346|PMID:8734460|PMID:20405919|PMID:16760132|PMID:17190852|KEGG:C01586|PMID:9609721|PMID:14646363|Reaxys:1073987|CAS:495-69-2|PMID:22770225|KNApSAcK:C00030483|HMDB:HMDB0000714|PMID:19283696 CHEBI:5725|CHEBI:24595|CHEBI:14400|CHEBI:12492 chebi_ontology owl:Class CHEBI:37998 biolink:NamedThing glycolithocholic acid monarch-merged.owl owl:Class CHEBI:40410 biolink:NamedThing N-acetylglycine monarch-merged.owl owl:Class CHEBI:64390 biolink:NamedThing N-hexanoylglycine An N-acylglycine in which the acyl group is specified as hexanoyl. monarch-merged.owl n-Hexanoylglycine|N-hexanoylglycine|N-(1-oxohexyl)glycine|Hexanoylglycine|Caproylglycine|N-caproylglycine 0 C8H15NO3 InChI=1S/C8H15NO3/c1-2-3-4-5-7(10)9-6-8(11)12/h2-6H2,1H3,(H,9,10)(H,11,12) UPCKIPHSXMXJOX-UHFFFAOYSA-N 173.20960 173.10519 CCCCCC(=O)NCC(O)=O Patent:EP415598|PMID:22770225|Patent:EP226304|Patent:US4757066|Reaxys:1773416|Patent:EP572167|Patent:EP517371|Patent:US5112863|HMDB:HMDB0000701|Patent:EP580409|Patent:US5559092|CAS:24003-67-6|Patent:US5238917|PMID:17190852 chebi_ontology owl:Class CHEBI:70979 biolink:NamedThing N-isobutyrylglycine An N-acylglycine in which the acyl group is specified as isobutryl. monarch-merged.owl N-(2-methylpropanoyl)glycine|isobutyrylglycine|[(2-methylpropanoyl)amino]acetic acid|isobutanoylglycine|N-isobutanoylglycine 0 C6H11NO3 InChI=1S/C6H11NO3/c1-4(2)6(10)7-3-5(8)9/h4H,3H2,1-2H3,(H,7,10)(H,8,9) DCICDMMXFIELDF-UHFFFAOYSA-N 145.15640 145.07389 CC(C)C(=O)NCC(O)=O PMID:8548022|PMID:22770225|PMID:23062437|Reaxys:1762789|PMID:7408214|PMID:20528888|PMID:20836999|PMID:17712735|PMID:14723814|HMDB:HMDB0000730|PMID:7360517 chebi_ontology owl:Class CHEBI:87606 biolink:NamedThing N-icosanoylglycine monarch-merged.owl owl:Class CHEBI:89929 biolink:NamedThing glycoursodeoxycholic acid monarch-merged.owl owl:Class CHEBI:132734 biolink:NamedThing 6-methylpretetramide(1-) monarch-merged.owl owl:Class CHEBI:132735 biolink:NamedThing 4-hydroxy-6-methylpretetramide(1-) monarch-merged.owl owl:Class CHEBI:134289 biolink:NamedThing xanthohumol(1-) monarch-merged.owl owl:Class CHEBI:134302 biolink:NamedThing desmethylxanthohumol(1-) monarch-merged.owl owl:Class CHEBI:134308 biolink:NamedThing xanthogalenol(1-) monarch-merged.owl owl:Class CHEBI:134309 biolink:NamedThing 4'-O-methylxanthohumol(1-) monarch-merged.owl owl:Class CHEBI:134346 biolink:NamedThing 2-acyl-4,6-diprenylphloroglucinol(1-) monarch-merged.owl owl:Class CHEBI:134371 biolink:NamedThing 2-acyl-4-prenylphloroglucinol(1-) monarch-merged.owl owl:Class CHEBI:134386 biolink:NamedThing 2-acylphloroglucinol(1-) monarch-merged.owl owl:Class CHEBI:134391 biolink:NamedThing 3,4,6-trichlorocatechol(1-) monarch-merged.owl owl:Class CHEBI:139273 biolink:NamedThing 4-O-methylxanthohumol(1-) monarch-merged.owl owl:Class CHEBI:140426 biolink:NamedThing 2,4,6-trichlorophenolate monarch-merged.owl owl:Class CHEBI:140662 biolink:NamedThing 2,4-diacetylphloroglucinol(1-) monarch-merged.owl owl:Class CHEBI:145992 biolink:NamedThing orlandin(1-) monarch-merged.owl owl:Class CHEBI:32402 biolink:NamedThing catecholate(2-) monarch-merged.owl owl:Class CHEBI:38150 biolink:NamedThing enterobactin(6-) monarch-merged.owl owl:Class CHEBI:50524 biolink:NamedThing catecholate(1-) monarch-merged.owl owl:Class CHEBI:50526 biolink:NamedThing phenolate monarch-merged.owl owl:Class CHEBI:57703 biolink:NamedThing 2-nitrophenolate monarch-merged.owl owl:Class CHEBI:57730 biolink:NamedThing 2-hydroxy-4-nitrophenolate monarch-merged.owl owl:Class CHEBI:57917 biolink:NamedThing 4-nitrophenolate monarch-merged.owl owl:Class CHEBI:57994 biolink:NamedThing 2,3,5,6-tetrachlorobenzene-1,4-bis(olate) monarch-merged.owl owl:Class CHEBI:58046 biolink:NamedThing 3,5-dibromo-4-oxidobenzonitrile(1-) monarch-merged.owl owl:Class CHEBI:58217 biolink:NamedThing pentachlorophenolate monarch-merged.owl owl:Class CHEBI:59815 biolink:NamedThing 2,3,5,6-tetrachlorophenolate monarch-merged.owl owl:Class CHEBI:61323 biolink:NamedThing pratensein(1-) monarch-merged.owl owl:Class CHEBI:61339 biolink:NamedThing 5-hydroxypseudobaptigenin(1-) monarch-merged.owl owl:Class CHEBI:71287 biolink:NamedThing 4-hydroxy-3-nitrophenylacetaldehyde(1-) monarch-merged.owl owl:Class CHEBI:77621 biolink:NamedThing 2',3,4,4',6'-pentahydroxychalcone(1-) monarch-merged.owl owl:Class CHEBI:77622 biolink:NamedThing 2',3,4,4',6'-pentahydroxychalcone 4'-O-beta-D-glucoside(1-) monarch-merged.owl owl:Class CHEBI:77639 biolink:NamedThing sulochrin(1-) monarch-merged.owl owl:Class CHEBI:77642 biolink:NamedThing 2'-O-methyllicodione(1-) monarch-merged.owl owl:Class CHEBI:77643 biolink:NamedThing protoaphin aglucone(1-) monarch-merged.owl owl:Class CHEBI:77645 biolink:NamedThing 2',4,4',6'-tetrahydroxychalcone(1-) monarch-merged.owl owl:Class CHEBI:77647 biolink:NamedThing 2,3',4,6-tetrahydroxybenzophenone(1-) monarch-merged.owl owl:Class CHEBI:77659 biolink:NamedThing emodin(1-) monarch-merged.owl owl:Class CHEBI:77711 biolink:NamedThing licodione(1-) monarch-merged.owl owl:Class CHEBI:77712 biolink:NamedThing xanthoaphin(1-) monarch-merged.owl owl:Class CHEBI:77728 biolink:NamedThing bergaptol(1-) monarch-merged.owl owl:Class CHEBI:77765 biolink:NamedThing 2,4,6-trihydroxybenzophenone(1-) monarch-merged.owl owl:Class CHEBI:77767 biolink:NamedThing 3,6-dichlorocatechol(1-) monarch-merged.owl owl:Class CHEBI:77805 biolink:NamedThing enterobactin(1-) monarch-merged.owl owl:Class CHEBI:77899 biolink:NamedThing (S)-averantin(1-) monarch-merged.owl owl:Class CHEBI:77900 biolink:NamedThing (1'S,5'S)-5'-hydroxyaverantin(1-) monarch-merged.owl owl:Class CHEBI:77904 biolink:NamedThing norsolorinic acid anthrone(1-) monarch-merged.owl owl:Class CHEBI:77907 biolink:NamedThing hydroxyversicolorone(1-) monarch-merged.owl owl:Class CHEBI:77931 biolink:NamedThing cyanidin 3-O-{6-O-[6-O-(4-coumaroyl)-beta-D-glucosyl]-2-O-beta-D-xylosyl-beta-D-galactoside}(1-) monarch-merged.owl owl:Class CHEBI:77933 biolink:NamedThing (S)-5'-oxoaverantin(1-) monarch-merged.owl owl:Class CHEBI:77935 biolink:NamedThing cyanidin 3-O-beta-D-galactoside(1-) monarch-merged.owl owl:Class CHEBI:77947 biolink:NamedThing (S)-versiconol(1-) monarch-merged.owl owl:Class CHEBI:77948 biolink:NamedThing isoliquiritigenin(1-) monarch-merged.owl owl:Class CHEBI:77950 biolink:NamedThing (2S-3S)-versiconal hemiacetal(1-) monarch-merged.owl owl:Class CHEBI:77951 biolink:NamedThing versicolorin B(1-) monarch-merged.owl owl:Class CHEBI:77975 biolink:NamedThing (2S,3S)-versiconal hemiacetal acetate(1-) monarch-merged.owl owl:Class CHEBI:77976 biolink:NamedThing versicolorin A(1-) monarch-merged.owl owl:Class CHEBI:77977 biolink:NamedThing noreugenin(1-) monarch-merged.owl owl:Class CHEBI:77978 biolink:NamedThing 2',4,4',6'-tetrahydroxychalcone 4'-O-beta-D-glucoside(1-) monarch-merged.owl owl:Class CHEBI:77988 biolink:NamedThing methyl aklanonate(1-) monarch-merged.owl owl:Class CHEBI:77994 biolink:NamedThing aklaviketone(1-) monarch-merged.owl owl:Class CHEBI:78326 biolink:NamedThing 5-hydroxyxanthotoxin(1-) monarch-merged.owl owl:Class CHEBI:79174 biolink:NamedThing 2,2',3-trihydroxydiphenyl ether(2-) monarch-merged.owl owl:Class CHEBI:84342 biolink:NamedThing nogalaviketone(1-) monarch-merged.owl owl:Class CHEBI:84345 biolink:NamedThing methyl nogalonate(1-) monarch-merged.owl owl:Class CHEBI:84561 biolink:NamedThing 2,4-dinitrophenol(1-) monarch-merged.owl owl:Class CHEBI:84571 biolink:NamedThing rifamycin SV(1-) monarch-merged.owl owl:Class CHEBI:84572 biolink:NamedThing 27-O-demethylrifamycin SV(1-) monarch-merged.owl owl:Class CHEBI:84952 biolink:NamedThing 7-demethylmitomycin B(2-) monarch-merged.owl owl:Class CHEBI:84955 biolink:NamedThing 7-demethylmitomycin A(2-) monarch-merged.owl owl:Class CHEBI:90397 biolink:NamedThing 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one(1-) monarch-merged.owl owl:Class CHEBI:90398 biolink:NamedThing (3,5-dichloro-2,4,6-trihydroxyphenyl)hexan-1-one(1-) monarch-merged.owl owl:Class CHEBI:132742 biolink:NamedThing lysophosphatidic acid monarch-merged.owl owl:Class CHEBI:32957 biolink:NamedThing lysophosphatidic acids monarch-merged.owl owl:Class CHEBI:60815 biolink:NamedThing lysobisphosphatidic acid monarch-merged.owl owl:Class CHEBI:22754 biolink:NamedThing berberine alkaloid monarch-merged.owl owl:Class CHEBI:15920 biolink:NamedThing columbamine monarch-merged.owl owl:Class CHEBI:16096 biolink:NamedThing palmatine monarch-merged.owl owl:Class CHEBI:16118 biolink:NamedThing berberine monarch-merged.owl owl:Class CHEBI:16233 biolink:NamedThing (S)-cheilanthifoline monarch-merged.owl owl:Class CHEBI:16563 biolink:NamedThing tetrahydropalmatine monarch-merged.owl owl:Class CHEBI:17129 biolink:NamedThing (S)-scoulerine monarch-merged.owl owl:Class CHEBI:17772 biolink:NamedThing (S)-tetrahydrocolumbamine monarch-merged.owl owl:Class CHEBI:18285 biolink:NamedThing (S)-stylopine monarch-merged.owl owl:Class CHEBI:38164 biolink:NamedThing organic heteropentacyclic compound monarch-merged.owl organic heteropentacyclic compounds owl:Class CHEBI:16470 biolink:NamedThing glyceollin monarch-merged.owl owl:Class CHEBI:16714 biolink:NamedThing codeine monarch-merged.owl owl:Class CHEBI:16776 biolink:NamedThing tabersonine monarch-merged.owl owl:Class CHEBI:17303 biolink:NamedThing morphine monarch-merged.owl owl:Class CHEBI:17699 biolink:NamedThing 16-hydroxytabersonine monarch-merged.owl owl:Class CHEBI:26759 biolink:NamedThing sterigmatocystins monarch-merged.owl owl:Class CHEBI:28201 biolink:NamedThing rotenone monarch-merged.owl owl:Class CHEBI:28833 biolink:NamedThing gibberellin A3 monarch-merged.owl owl:Class CHEBI:48210 biolink:NamedThing cyclopentafurofurochromene monarch-merged.owl cyclopentafurofurochromenes owl:Class CHEBI:48626 biolink:NamedThing pyranoindolizinoquinoline monarch-merged.owl owl:Class CHEBI:52130 biolink:NamedThing benzofuropyranochromene monarch-merged.owl owl:Class CHEBI:64531 biolink:NamedThing fumitremorgin B monarch-merged.owl owl:Class CHEBI:71537 biolink:NamedThing (1'S,5'S)-averufin monarch-merged.owl owl:Class CHEBI:72767 biolink:NamedThing demethoxyfumitremorgin C monarch-merged.owl owl:Class CHEBI:7510 biolink:NamedThing neopinone monarch-merged.owl owl:Class CHEBI:769 biolink:NamedThing 16-methoxytabersonine monarch-merged.owl owl:Class CHEBI:9519 biolink:NamedThing thebaine monarch-merged.owl owl:Class CHEBI:50996 biolink:NamedThing tertiary amino compound A compound formally derived from ammonia by replacing three hydrogen atoms by organyl groups. monarch-merged.owl tertiary amino compounds chebi_ontology owl:Class CHEBI:134486 biolink:NamedThing dimethylphosphatidylethanolamine 32:0 monarch-merged.owl owl:Class CHEBI:17104 biolink:NamedThing 6-hydroxyprotopine monarch-merged.owl owl:Class CHEBI:27958 biolink:NamedThing cocaine A tropane alkaloid obtained from leaves of the South American shrub Erythroxylon coca. monarch-merged.owl 2-methyl-3beta-hydroxy-1alphaH,5alphaH-tropane-2beta-carboxylate benzoate (ester)|(1R,2R,3S,5S)-2-(methoxycarbonyl)tropan-3-yl benzoate|cocainum|Cocain|[1R-(exo,exo)]-3-(benzoyloxy)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylic acid, methyl ester|methyl benzoylecgonine|l-cocaine|Cocaina|(-)-cocaine|Benzoylmethylecgonine|methyl [1R-(exo,exo)]-3-(benzoyloxy)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate|Kokain|COCAINE|beta-Cocain|methyl (1R,2R,3S,5S)-3-(benzoyloxy)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate|l-Cocain|Cocaine|Neurocaine owl:Class CHEBI:28948 biolink:NamedThing gramine monarch-merged.owl owl:Class CHEBI:31529 biolink:NamedThing ecgonine methyl ester monarch-merged.owl owl:Class CHEBI:32876 biolink:NamedThing tertiary amine A compound formally derived from ammonia by replacing three hydrogen atoms by hydrocarbyl groups. monarch-merged.owl Tertiary amine|R3N|tertiaeres Amin|tertiary amines 0 NR3 14.00670 14.00307 [*]N([*])[*] KEGG:C02196 CHEBI:26879|CHEBI:9458 chebi_ontology owl:Class CHEBI:35643 biolink:NamedThing aporphine monarch-merged.owl owl:Class CHEBI:39054 biolink:NamedThing NTA monarch-merged.owl owl:Class CHEBI:46775 biolink:NamedThing N-alkylpyrrolidine monarch-merged.owl N-alkylpyrrolidines chebi_ontology owl:Class CHEBI:46920 biolink:NamedThing N-methylpiperazine monarch-merged.owl owl:Class CHEBI:5373 biolink:NamedThing (S)-glaucine monarch-merged.owl owl:Class CHEBI:59990 biolink:NamedThing N,N-dimethyl-4-nitrosoaniline monarch-merged.owl owl:Class CHEBI:64610 biolink:NamedThing tenocyclidine monarch-merged.owl owl:Class CHEBI:8614 biolink:NamedThing psilocybin monarch-merged.owl owl:Class CHEBI:2571 biolink:NamedThing aliphatic alcohol An alcohol derived from an aliphatic compound. monarch-merged.owl an aliphatic alcohol|aliphatic alcohols|Aliphatic alcohol 0 HOR 17.007 17.00274 O* KEGG:C02525 chebi_ontology owl:Class CHEBI:37868 biolink:NamedThing octanol A fatty alcohol consisting of a hydroxy function at any position of an unbranched saturated chain of eight carbon atoms. monarch-merged.owl n-octanol|octyl alcohol|Oktylalkohol|octanol|Oktanol 0 C8H18O 130.228 130.13577 CAS:29063-28-3 chebi_ontology owl:Class CHEBI:50584 biolink:NamedThing alkyl alcohol An aliphatic alcohol in which the aliphatic alkane chain is substituted by a hydroxy group at unspecified position. monarch-merged.owl hydroxyalkanes|hydroxyalkane|alkyl alcohols CHEBI:22937|CHEBI:50581 chebi_ontology owl:Class CHEBI:132801 biolink:NamedThing 18(S)-HEPE monarch-merged.owl owl:Class CHEBI:81563 biolink:NamedThing 18(R)-HEPE monarch-merged.owl owl:Class CHEBI:132802 biolink:NamedThing (5S)-hydroperoxy-(18S)-hydroxy-(6E,8Z,11Z,14Z,16E)-icosapentaenoic acid monarch-merged.owl owl:Class CHEBI:132908 biolink:NamedThing 5(S)-hydroperoxy-18(R)-hydroxy-(6E,8Z,11Z,14Z,16E)-icosapentaenoic acid monarch-merged.owl owl:Class CHEBI:91287 biolink:NamedThing (5S)-hydroperoxy-18-hydroxy-EPE monarch-merged.owl owl:Class CHEBI:132803 biolink:NamedThing UDP-N-acetyl-alpha-D-galactosamine 4,6-bissulfate monarch-merged.owl owl:Class CHEBI:16544 biolink:NamedThing UDP-N-acetyl-D-galactosamine 4,6-bissulfate monarch-merged.owl owl:Class CHEBI:132804 biolink:NamedThing UDP-N-acetyl-alpha-D-galactosamine 4-sulfate monarch-merged.owl owl:Class CHEBI:17550 biolink:NamedThing UDP-N-acetyl-D-galactosamine 4-sulfate monarch-merged.owl owl:Class CHEBI:22480 biolink:NamedThing amino disaccharide A disaccharide derivative that is a disaccharide having one or more substituted or unsubstituted amino groups in place of hydroxy groups at unspecified positions. monarch-merged.owl amino-disaccharides chebi_ontology owl:Class CHEBI:139508 biolink:NamedThing beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-glucosaminide monarch-merged.owl owl:Class CHEBI:16655 biolink:NamedThing N-acetyl-3-O-(4-deoxy-alpha-L-threo-hex-4-enopyranosyluronic acid)-D-galactosamine monarch-merged.owl owl:Class CHEBI:17446 biolink:NamedThing 3-D-glucuronosyl-N(2),6-disulfo-beta-D-glucosamine monarch-merged.owl owl:Class CHEBI:18113 biolink:NamedThing D-galactosyl-(1->3)-N-acetyl-beta-D-galactosamine monarch-merged.owl owl:Class CHEBI:23101 biolink:NamedThing N,N'-diacetylchitobioses monarch-merged.owl owl:Class CHEBI:25002 biolink:NamedThing lactosamines monarch-merged.owl owl:Class CHEBI:50674 biolink:NamedThing chitobioses monarch-merged.owl owl:Class CHEBI:546807 biolink:NamedThing beta-D-Galp-(1->3)-D-GalpNAc An amino disaccharide consisting of D-galactopyranose at the non-reducing end joined by a (1->3) glycosidic linkage to N-acetyl-D-galactopyranosamine. monarch-merged.owl beta-D-Galp-(1->3)-D-GalpNAc|beta-D-Gal-(1->3)-D-GalNAc|beta-D-galactopyranosyl-(1->3)-2-acetamido-2-deoxy-D-galactopyranose|Thomsen-Friedenreich epitope|TF epitope|2-acetamido-2-deoxy-3-O-beta-D-galactopyranosyl-D-galactopyranose|WURCS=2.0/2,2,1/[a2112h-1x_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2/a3-b1|beta-D-galactosyl-3-N-acetyl-D-galactosamine|2-(acetylamino)-2-deoxy-3-O-beta-D-galactopyranosyl-D-galactopyranose|beta-D-galactosyl-(1->3)-N-acetyl-D-galactosamine|(Gal)1 (GalNAc)1|beta-D-Galactopyranosyl-(1->3)-N-acetyl-D-galactosamine|Galbeta1-3GalNAc|Galbeta1->3GalNAc 0 C14H25NO11 InChI=1S/C14H25NO11/c1-4(18)15-7-12(9(20)6(3-17)24-13(7)23)26-14-11(22)10(21)8(19)5(2-16)25-14/h5-14,16-17,19-23H,2-3H2,1H3,(H,15,18)/t5-,6-,7-,8+,9+,10+,11-,12-,13?,14+/m1/s1 HMQPEDMEOBLSQB-UITYFYQISA-N 383.34840 383.14276 CC(=O)N[C@H]1C(O)O[C@H](CO)[C@H](O)[C@@H]1O[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O PMID:2461959|PMID:28188832|PMID:1933953|PMID:19221437|PMID:2584393|PMID:7757427|PMID:19913595|Beilstein:4788642|PMID:3360006|PMID:11459848|CAS:20972-29-6|KEGG:G10607|GlyTouCan:G78436BB|PMID:16776550|PMID:15963963|PMID:19506091|PMID:59831|PMID:1291050|PMID:11294842|PMID:19443021|GlyGen:G78436BB|PMID:11425800|PMID:12472179|PMID:2470785|PMID:2055602|PMID:2457603|KEGG:C07278|Reaxys:4788642|PMID:9405387 CHEBI:22782|CHEBI:10382|CHEBI:27716|CHEBI:22773|CHEBI:62468 chebi_ontology owl:Class CHEBI:61190 biolink:NamedThing beta-D-GalpNAc-(1->4)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:61596 biolink:NamedThing alpha-Neu5Ac-(2->3)-D-Gal monarch-merged.owl owl:Class CHEBI:64024 biolink:NamedThing beta-D-GlcpA-(1->3)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:132809 biolink:NamedThing (8S)-hepoxilin A3 monarch-merged.owl owl:Class CHEBI:132814 biolink:NamedThing beta-D-Galp-(1->3)-beta-D-GalpNAc-(1->4)-beta-D-Galp-(1->4)-D-Glcp monarch-merged.owl owl:Class CHEBI:59412 biolink:NamedThing amino tetrasaccharide monarch-merged.owl owl:Class CHEBI:59216 biolink:NamedThing beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->4)-beta-D-Galp-(1->4)-beta-D-Glcp monarch-merged.owl owl:Class CHEBI:62130 biolink:NamedThing beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-D-GlcpNAc monarch-merged.owl owl:Class CHEBI:50018 biolink:NamedThing glycosyloxyflavone monarch-merged.owl owl:Class CHEBI:14268 biolink:NamedThing flavonol 3-O-glycoside monarch-merged.owl owl:Class CHEBI:16658 biolink:NamedThing flavonol 3-O-[beta-D-xylosyl-(1->2)-beta-D-glycoside]s monarch-merged.owl owl:Class CHEBI:17952 biolink:NamedThing flavonol 3-O-[alpha-L-rhamnosyl-(1->6)-beta-D-glucoside]s monarch-merged.owl owl:Class CHEBI:18128 biolink:NamedThing luteolin 7-O-beta-D-glucosiduronic acid monarch-merged.owl owl:Class CHEBI:25091 biolink:NamedThing luteolin O-glucuronoside monarch-merged.owl owl:Class CHEBI:31742 biolink:NamedThing kaempferol 3-O-beta-D-galactoside monarch-merged.owl owl:Class CHEBI:61278 biolink:NamedThing scutellarin monarch-merged.owl owl:Class CHEBI:64634 biolink:NamedThing kaempferol O-glucoside monarch-merged.owl owl:Class CHEBI:76294 biolink:NamedThing kaempferol 3-O-beta-D-xyloside monarch-merged.owl owl:Class CHEBI:76424 biolink:NamedThing quercetin O-glycoside monarch-merged.owl owl:Class CHEBI:63367 biolink:NamedThing monosaccharide derivative A carbohydrate derivative that is formally obtained from a monosaccharide. monarch-merged.owl monosaccharide derivatives chebi_ontology owl:Class CHEBI:15579 biolink:NamedThing (25S)-5beta-spirostan-3beta-yl beta-D-glucoside monarch-merged.owl owl:Class CHEBI:16546 biolink:NamedThing 1-O-sinapoyl-beta-D-glucose monarch-merged.owl owl:Class CHEBI:17391 biolink:NamedThing 5-O-(indol-3-ylacetyl)-myo-inositol D-galactoside monarch-merged.owl owl:Class CHEBI:17438 biolink:NamedThing O-beta-D-xylosylzeatin monarch-merged.owl owl:Class CHEBI:17495 biolink:NamedThing cholesteryl beta-D-glucoside monarch-merged.owl owl:Class CHEBI:17505 biolink:NamedThing alpha-D-galactosyl-(1->3)-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:17540 biolink:NamedThing methyl beta-D-galactoside monarch-merged.owl owl:Class CHEBI:17558 biolink:NamedThing quercitrin monarch-merged.owl owl:Class CHEBI:24589 biolink:NamedThing monosaccharide sulfate monarch-merged.owl owl:Class CHEBI:25609 biolink:NamedThing nucleotide-sugar monarch-merged.owl owl:Class CHEBI:27475 biolink:NamedThing cyanidin 3-O-beta-D-galactoside monarch-merged.owl owl:Class CHEBI:27590 biolink:NamedThing 7-hydroxyflavanone 7-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:28000 biolink:NamedThing N-acetyl-D-hexosaminide monarch-merged.owl owl:Class CHEBI:28071 biolink:NamedThing (indol-3-ylacetyl)-myo-inositol 3-L-arabinoside monarch-merged.owl owl:Class CHEBI:28401 biolink:NamedThing N-acetyl-D-glucosaminide monarch-merged.owl owl:Class CHEBI:28680 biolink:NamedThing cytarabine monarch-merged.owl owl:Class CHEBI:28761 biolink:NamedThing N-acetyl-D-galactosaminide monarch-merged.owl owl:Class CHEBI:29706 biolink:NamedThing 10-deoxymethymycin monarch-merged.owl owl:Class CHEBI:31467 biolink:NamedThing descarbamoylnovobiocin monarch-merged.owl owl:Class CHEBI:31469 biolink:NamedThing desmethyldescarbamoylnovobiocin monarch-merged.owl owl:Class CHEBI:33447 biolink:NamedThing phospho sugar Any monosaccharide containing an alcoholic hydroxy group esterified with phosphoric acid. monarch-merged.owl phosphosugar|phospho sugar|phosphorylated sugar|phospho sugars|monosaccharide phosphates|phosphorylated sugars|phosphosugars PMID:18186488|KEGG:C00934 CHEBI:26086|CHEBI:15132|CHEBI:9320|CHEBI:25406 chebi_ontology owl:Class CHEBI:42202 biolink:NamedThing daidzein 7-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:42896 biolink:NamedThing 1-thio-beta-D-glucopyranose monarch-merged.owl owl:Class CHEBI:44230 biolink:NamedThing 6-(alpha-D-glucosaminyl)-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:52426 biolink:NamedThing 6-(alpha-D-glucosaminyl)-1D-myo-inositol 1,2-cyclic phosphate monarch-merged.owl owl:Class CHEBI:52973 biolink:NamedThing ergosteryl 3-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:59475 biolink:NamedThing 6-O-acyl-D-glucose monarch-merged.owl owl:Class CHEBI:60982 biolink:NamedThing methyl galactoside monarch-merged.owl owl:Class CHEBI:61338 biolink:NamedThing bacillithiol monarch-merged.owl owl:Class CHEBI:63368 biolink:NamedThing aldose derivative monarch-merged.owl owl:Class CHEBI:63378 biolink:NamedThing anhydro sugar derivative monarch-merged.owl owl:Class CHEBI:63383 biolink:NamedThing heptose derivative monarch-merged.owl owl:Class CHEBI:63385 biolink:NamedThing hexose derivative A monosaccharide derivative that is formally obtained from a hexose. monarch-merged.owl hexose derivatives chebi_ontology owl:Class CHEBI:63394 biolink:NamedThing ketoaldonic acid derivative A monosaccharide derivative that is formally obtained from a ketoaldonic acid. monarch-merged.owl ketoaldonic acid derivatives chebi_ontology owl:Class CHEBI:63402 biolink:NamedThing ketose derivative monarch-merged.owl owl:Class CHEBI:63409 biolink:NamedThing pentose derivative A monosaccharide derivative that is formally obtained from a pentose. monarch-merged.owl pentose derivatives chebi_ontology owl:Class CHEBI:63413 biolink:NamedThing triose derivative monarch-merged.owl owl:Class CHEBI:64888 biolink:NamedThing (S)-malyl alpha-D-glucosaminide monarch-merged.owl owl:Class CHEBI:74020 biolink:NamedThing diosgenin 3-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:7775 biolink:NamedThing ononin monarch-merged.owl owl:Class CHEBI:8113 biolink:NamedThing phlorizin monarch-merged.owl owl:Class CHEBI:90769 biolink:NamedThing 3-(beta-D-galactosyl)monooctanoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:90770 biolink:NamedThing 3-(beta-D-galactosyl)mono(long-chain acyl)-sn-glycerol monarch-merged.owl owl:Class CHEBI:75759 biolink:NamedThing beta-L-glucoside monarch-merged.owl owl:Class CHEBI:132875 biolink:NamedThing N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:16073 biolink:NamedThing N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-D-glucosaminyl undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:132876 biolink:NamedThing beta-D-glucosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:15696 biolink:NamedThing beta-D-glucosyl-(1->4)-N-acetyl-D-glucosaminyl undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:132877 biolink:NamedThing 4-O-[(2R)-1-glycerylphosphono]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:26186 biolink:NamedThing polyprenyl phospho oligosaccharide monarch-merged.owl owl:Class CHEBI:134527 biolink:NamedThing alpha-D-Gal-(1->3)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol monarch-merged.owl owl:Class CHEBI:136078 biolink:NamedThing 4-O-[di(2R)-1-glycerylphosphono]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:136396 biolink:NamedThing 4-O-[1-D-ribitylphosphono-(2R)-1-glycerylphosphono]-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl ditrans,octacis-undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:138020 biolink:NamedThing alpha-D-mannosyl-(1->3)-N-acetyl-alpha-D-glucosaminyl-1-diphospho-ditrans,polycis-undecaprenol monarch-merged.owl owl:Class CHEBI:138109 biolink:NamedThing alpha-D-mannosyl-(1->3)-alpha-D-mannosyl-(1->3)-alpha-D-mannosyl-(1->3)-N-acetyl-alpha-D-glucosaminyl-1-diphospho-ditrans,polycis-undecaprenol monarch-merged.owl owl:Class CHEBI:15926 biolink:NamedThing dolichyl diphosphooligosaccharide monarch-merged.owl owl:Class CHEBI:27194 biolink:NamedThing undecaprenyldiphospho-N-acetylmuramoyl peptide monarch-merged.owl owl:Class CHEBI:61201 biolink:NamedThing beta-D-GlcA-(1->2)-alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol monarch-merged.owl owl:Class CHEBI:61211 biolink:NamedThing beta-D-Man-(1->4)-beta-D-GlcA-(1->2)-alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol monarch-merged.owl owl:Class CHEBI:61240 biolink:NamedThing beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol monarch-merged.owl owl:Class CHEBI:61251 biolink:NamedThing alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol monarch-merged.owl owl:Class CHEBI:61533 biolink:NamedThing alpha-D-FucNAc4-(1->4)-beta-D-ManNAcA-(1->4)-D-GlcNAc-undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:61561 biolink:NamedThing beta-D-ManNAcA-(1->4)-alpha-D-GlcNAc-1-diphospho-ditrans,polycis-undecaprenol monarch-merged.owl owl:Class CHEBI:62858 biolink:NamedThing 4,6-Me(COOH)C-beta-D-Man-(1->4)-beta-D-GlcA-(1->2)-alpha-D-Man-(1->3)-beta-D-Glc-(1->4)-alpha-D-Glc-1-diphospho-ditrans,polycis-undecaprenol monarch-merged.owl owl:Class CHEBI:68826 biolink:NamedThing N-acetyl-alpha-D-galactosaminyl-(1->3)-N,N'-diacetyl-alpha-D-bacillosaminyl-tritrans,heptacis-undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:68827 biolink:NamedThing alpha-D-GalNAc-(1->4)-alpha-D-GalNAc-(1->3)-alpha-D-diNAcBac-tritrans,heptacis-undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:68829 biolink:NamedThing [alpha-D-GalNAc-(1->4)]4-alpha-D-GalNAc-(1->3)-alpha-D-diNAcBac-tritrans,heptacis-undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:68831 biolink:NamedThing [alpha-D-GalNAc-(1->4)]2-[beta-D-Glc-(1->3)]-[alpha-D-GalNAc-(1->4)]2-alpha-D-GalNAc-(1->3)-alpha-D-diNAcBac-tritrans,heptacis-undecaprenyl diphosphate monarch-merged.owl owl:Class CHEBI:74028 biolink:NamedThing beta-D-Gal-(1->3)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol monarch-merged.owl owl:Class CHEBI:74032 biolink:NamedThing beta-D-Gal-(1->4)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol monarch-merged.owl owl:Class CHEBI:74033 biolink:NamedThing beta-D-Glc-(1->3)-alpha-D-GlcNAc-diphospho-ditrans,octacis-undecaprenol monarch-merged.owl owl:Class CHEBI:74036 biolink:NamedThing alpha-D-GalNAc-(1->3)-alpha-D-GalNAc-diphospho-ditrans,octacis-undecaprenol monarch-merged.owl owl:Class CHEBI:74038 biolink:NamedThing beta-D-Gal-(1->3)-alpha-D-GalNAc-(1->3)-alpha-D-GalNAc-diphospho-ditrans,octacis-undecaprenol monarch-merged.owl owl:Class CHEBI:74040 biolink:NamedThing alpha-L-Fuc-(1->2)-beta-D-Gal-(1->3)-alpha-D-GalNAc-(1->3)-alpha-D-GalNAc-diphospho-ditrans,octacis-undecaprenol monarch-merged.owl owl:Class CHEBI:74041 biolink:NamedThing alpha-D-Gal-(1->3)-[alpha-L-Fuc-(1->2)]-beta-D-Gal-(1->3)-alpha-D-GalNAc-(1->3)-alpha-D-GalNAc-diphospho-ditrans,octacis-undecaprenol monarch-merged.owl owl:Class CHEBI:132883 biolink:NamedThing 11(S),15(S)-dihydroxy-14(R)-(S-glutathionyl)-5(Z),8(Z),12(E)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:136105 biolink:NamedThing (R)-PGA2-S-glutathione conjugate monarch-merged.owl owl:Class CHEBI:136106 biolink:NamedThing (S)-PGA2-S-glutathione conjugate monarch-merged.owl owl:Class CHEBI:136110 biolink:NamedThing (R)-PGJ2-S-glutathione conjugate monarch-merged.owl owl:Class CHEBI:136112 biolink:NamedThing (S)-PGJ2-S-glutathione conjugate monarch-merged.owl owl:Class CHEBI:136994 biolink:NamedThing 2-(glutathion-S-yl)-1,4-hydroquinone monarch-merged.owl owl:Class CHEBI:137281 biolink:NamedThing (Z)-1-(glutathione-S-yl)-2-phenylacetohydroximate monarch-merged.owl owl:Class CHEBI:8927 biolink:NamedThing S-(2,4-dinitrophenyl)glutathione monarch-merged.owl owl:Class CHEBI:149498 biolink:NamedThing (7Z,10Z,13Z,16Z)-docosatetraenoyl derivative monarch-merged.owl owl:Class CHEBI:149499 biolink:NamedThing (7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl derivative monarch-merged.owl owl:Class CHEBI:149500 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl derivative monarch-merged.owl owl:Class CHEBI:149502 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl derivative monarch-merged.owl owl:Class CHEBI:36200 biolink:NamedThing hepoxilin monarch-merged.owl owl:Class CHEBI:22975 biolink:NamedThing cadinane sesquiterpenoid monarch-merged.owl owl:Class CHEBI:132933 biolink:NamedThing intermediate-density lipoprotein A class of lipoproteins with a density between that of low-density and very-low-density lipoproteins. They are formed by the degradatiion of very-low-density lipoproteins. monarch-merged.owl IDL|intermediate-density lipoproteins|intermediate density lipoprotein|intermediate density lipoproteins PMID:9740500|PMID:24353240|PMID:24680982|Wikipedia:Intermediate-density_lipoprotein|PMID:15698598|PMID:9133510 chebi_ontology owl:Class CHEBI:6495 biolink:NamedThing lipoprotein A clathrate complex consisting of a lipid enwrapped in a protein host without covalent binding in such a way that the complex has a hydrophilic outer surface consisting of all the protein and the polar ends of any phospholipids. monarch-merged.owl lipoprotein particle|lipoproteins|Lipoprotein KEGG:C01834 chebi_ontology owl:Class CHEBI:39025 biolink:NamedThing high-density lipoprotein A class of lipoproteins of small size (4-13 nm) and dense (greater than 1.063 g/ml) particles. They are synthesized in the liver without a lipid core, accumulate cholesterol esters from peripheral tissues and transport them to the liver for re-utilization or elimination from the body (the reverse cholesterol transport). monarch-merged.owl HDL|high-density lipoproteins|alpha-lipoproteins chebi_ontology owl:Class CHEBI:39026 biolink:NamedThing low-density lipoprotein A class of lipoproteins of small size (18-25 nm) and low density (1.019-1.063 g/ml) particles with a core composed mainly of cholesterol esters and smaller amounts of triglycerides. The surface monolayer consists mostly of phospholipids, a single copy of apolipoprotein B-100, and free cholesterol molecules. The main function of LDL is to transport cholesterol and cholesterol esters from the liver. Excessive levels are associated with cardiovascular disease. monarch-merged.owl low-density lipoproteins|LDL|beta-lipoproteins PMID:15583011|PMID:28847800|PMID:28870972|PMID:15913955|PMID:11082530|Wikipedia:Low-density_lipoprotein|PMID:28401639|PMID:28792690|PMID:28827781|PMID:28859941|PMID:19349632|PMID:28432662 chebi_ontology owl:Class CHEBI:39027 biolink:NamedThing very-low-density lipoprotein A class of lipoproteins of large size (30-80 nm), very low density (0.93-1.006 g/ml) particles with a core composed mainly of triglycerides and a surface monolayer of phospholipids and cholesterol into which are imbedded the apolipoproteins B, E, and C. VLDL facilitate the transport of endogenously made triglycerides to extrahepatic tissues. monarch-merged.owl pre-beta-lipoproteins|very-low-density lipoproteins|VLDL chebi_ontology owl:Class CHEBI:60151 biolink:NamedThing oxidised LDL monarch-merged.owl owl:Class CHEBI:132944 biolink:NamedThing octadec-9-enoate monarch-merged.owl owl:Class CHEBI:30827 biolink:NamedThing cis-vaccenate(1-) monarch-merged.owl owl:Class CHEBI:30828 biolink:NamedThing trans-vaccenate(1-) monarch-merged.owl owl:Class CHEBI:132946 biolink:NamedThing (R)-2-hydroxyglutaryl-CoA(5-) monarch-merged.owl owl:Class CHEBI:132948 biolink:NamedThing pyridoxate A pyridinemonocarboxylate obtained by deprotonation of the carboxy group of any pyridoxic acid. monarch-merged.owl pyridoxic acid anions|pyridoxic acid anion|pyridoxates|pyridoxate anion|pyridoxate anions chebi_ontology owl:Class CHEBI:140633 biolink:NamedThing 5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate monarch-merged.owl owl:Class CHEBI:32544 biolink:NamedThing nicotinate monarch-merged.owl owl:Class CHEBI:38184 biolink:NamedThing picolinate monarch-merged.owl owl:Class CHEBI:38186 biolink:NamedThing isonicotinate monarch-merged.owl owl:Class CHEBI:33798 biolink:NamedThing tetraric acid anion monarch-merged.owl owl:Class CHEBI:15778 biolink:NamedThing N-acyl-D-amino acid Any N-acyl-amino acid in which the amino acid moiety has D configuration. monarch-merged.owl 0 C3H3NO3R2 101.06080 101.01129 OC(=O)[C@@H]([*])NC([*])=O CHEBI:12474|CHEBI:7224|CHEBI:21631 chebi_ontology owl:Class CHEBI:17355 biolink:NamedThing (S)-2-acetamido-6-oxopimelic acid monarch-merged.owl owl:Class CHEBI:21644 biolink:NamedThing N-acyl-L-amino acid Any N-acylamino acid having L-configuration. monarch-merged.owl chebi_ontology owl:Class CHEBI:27470 biolink:NamedThing folic acid An N-acyl-amino acid that is a form of the water-soluble vitamin B9. Its biologically active forms (tetrahydrofolate and others) are essential for nucleotide biosynthesis and homocysteine remethylation. monarch-merged.owl pteroyl-L-monoglutamic acid|vitamin Bc|vitamin M|Folsaeure|folic acid|pteroylglutamic acid|FOLIC ACID|PGA|pteroyl-L-glutamic acid|PteGlu|vitamin Be|Folicet|N-(4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid|vitamin B11|acido folico|N-[(4-{[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino}phenyl)carbonyl]-L-glutamic acid|acide folique|(2S)-2-(4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}benzamido)pentanedioic acid|Pteroylglutamic acid|pteroylmonoglutamic acid|Acfol|N-pteroyl-L-glutamic acid|Folate|vitamin B9|acidum folicum|Folic acid 0 C19H19N7O6 InChI=1S/C19H19N7O6/c20-19-25-15-14(17(30)26-19)23-11(8-22-15)7-21-10-3-1-9(2-4-10)16(29)24-12(18(31)32)5-6-13(27)28/h1-4,8,12,21H,5-7H2,(H,24,29)(H,27,28)(H,31,32)(H3,20,22,25,26,30)/t12-/m0/s1 OVBPIULPVIDEAO-LBPRGKRZSA-N 441.39750 441.13968 Nc1nc2ncc(CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)nc2c(=O)[nH]1 DrugBank:DB00158|PMID:15797531|PMID:9040515|PMID:16277678|PMID:15797685|PMID:10897644|PMID:16093404|PMID:14387833|PMID:15990733|PMID:11959400|PDBeChem:FOL|PMID:15754725|LINCS:LSM-5355|PMID:19355913|PMID:9683174|PMID:16380297|AGR:IND606960789|Reaxys:100781|PMID:11451208|KEGG:C00504|FooDB:FDB014504|PMID:10138938|PMID:33624660|PMID:9808640|Chemspider:5815|PMID:11261364|PMID:9420019|PMID:9565830|PMID:34207319|PMID:19121630|Wikipedia:Folic_Acid|PMID:8235383|PMID:15321809|PMID:10958818|PMID:15831910|CAS:59-30-3|PMID:34219855|PMID:18788725|KNApSAcK:C00001539|PMID:16871332|PMID:17784727|PMID:19335717|KEGG:D00070|PMID:33968971|Beilstein:100781|Drug_Central:1231|PMID:33965562|PMID:7738698|PMID:9781393|MetaCyc:CPD-12826|HMDB:HMDB0000121|PMID:9808641|PMID:15523939|PMID:24650098 CHEBI:42610|CHEBI:24075|CHEBI:5140|CHEBI:569217 chebi_ontology owl:Class CHEBI:50759 biolink:NamedThing N-formyl amino acid monarch-merged.owl owl:Class CHEBI:55399 biolink:NamedThing L-aminoacyl-L-amino acid monarch-merged.owl owl:Class CHEBI:55414 biolink:NamedThing N-acylhomoserine monarch-merged.owl owl:Class CHEBI:81405 biolink:NamedThing N-Acetyldemethylphosphinothricin monarch-merged.owl owl:Class CHEBI:83985 biolink:NamedThing N(2)-acylglutamine monarch-merged.owl owl:Class CHEBI:86315 biolink:NamedThing methyl sulfide Any aliphatic sulfide in which at least one of the organyl groups attached to the sulfur is a methyl group. monarch-merged.owl methyl thioether|methyl sulfides|a methyl thioether|methyl thioethers 0 CH3SR 47.101 46.99555 CS[*] MetaCyc:Methyl-thioethers CHEBI:25260 chebi_ontology owl:Class CHEBI:134680 biolink:NamedThing omega-(methylsulfanyl)-(E)-alkanal oxime monarch-merged.owl owl:Class CHEBI:136065 biolink:NamedThing 1-aci-nitro-omega-(methylsulfanyl)alkane monarch-merged.owl owl:Class CHEBI:137006 biolink:NamedThing N-hydroxy-L-polyhomomethionine monarch-merged.owl owl:Class CHEBI:38534 biolink:NamedThing 1-(methylsulfanyl)acetaldoxime monarch-merged.owl Methyl N-hydroxyethanimidothioate|Methomyl oxime|methyl N-hydroxyethanimidothioate|1-(Methylthio)acetaldehyde oxime|1-(Methylthio)acetaldoxime|Methyl N-hydroxyacetimidothioate|Methyl thioacetohydroxamate 0 C3H7NOS InChI=1S/C3H7NOS/c1-3(4-5)6-2/h5H,1-2H3 TYEVWCPZVQACAE-UHFFFAOYSA-N 105.15982 105.02484 CSC(C)=NO CAS:13749-94-5|Beilstein:1901214 chebi_ontology owl:Class CHEBI:49019 biolink:NamedThing 3-methylthiopropanol monarch-merged.owl owl:Class CHEBI:50700 biolink:NamedThing 5-(methylsulfanyl)pentanal oxime monarch-merged.owl owl:Class CHEBI:60330 biolink:NamedThing 2-methyl-2-(methylsulfanyl)propanal oxime The oxime resulting from the formal condensation of 2-methyl-2-(methylsulfanyl)propanal with hydroxylamine. Addition of the oxime group to methyl isocyanate forms the final step in the synthesis of the systemic insecticide aldicarb. monarch-merged.owl 2-methyl-2-(methylthio)propanal oxime|Temik oxime|2-(methylthio)isobutyraldehyde oxime|2-methyl-2-(methylthio)propionaldehyde oxime|N-hydroxy-2-methyl-2-(methylsulfanyl)propan-1-imine|2-methyl-2-(methylthio)propionaldoxime|2-(methylthio)-2-methylpropionaldehyde oxime|2-methyl-2-(methylsulfanyl)propanaldoxime|ADO|aldicarb oxime 0 C5H11NOS InChI=1S/C5H11NOS/c1-5(2,8-3)4-6-7/h4,7H,1-3H3 ZFGMCJAXIZTVJA-UHFFFAOYSA-N 133.21200 133.05614 [H]C(=NO)C(C)(C)SC Reaxys:2038299|Beilstein:2038299|Patent:US3217037|CAS:1646-75-9 chebi_ontology owl:Class CHEBI:132970 biolink:NamedThing 5-ammoniolevulinic acid A primary ammonium ion obtained by protonation of the amino group of 5-aminolevulinic acid. monarch-merged.owl 4-carboxy-2-oxobutan-1-aminium|5-aminolevulinic acid cation|5-aminolevulinic acid(1+) +1 C5H10NO3 InChI=1S/C5H9NO3/c6-3-4(7)1-2-5(8)9/h1-3,6H2,(H,8,9)/p+1 ZGXJTSGNIOSYLO-UHFFFAOYSA-O 132.138 132.06552 C(C(=O)C[NH3+])CC(=O)O chebi_ontology owl:Class CHEBI:133427 biolink:NamedThing omega-ammonioaldehyde monarch-merged.owl owl:Class CHEBI:136514 biolink:NamedThing indol-3-ylmethylamine(1+) monarch-merged.owl owl:Class CHEBI:141668 biolink:NamedThing L-tyrosinal(1+) A primary ammonium ion resulting from the protonation of the amino group of L-tyrosinal. monarch-merged.owl L-tyrosinal|(2S)-1-(4-hydroxyphenyl)-3-oxopropan-2-aminium|(2S)-1-(p-hydroxyphenyl)-3-oxopropan-2-aminium +1 C9H12NO2 InChI=1S/C9H11NO2/c10-8(6-11)5-7-1-3-9(12)4-2-7/h1-4,6,8,12H,5,10H2/p+1/t8-/m0/s1 DXGAIOIQACHYRK-QMMMGPOBSA-O 166.197 166.08626 O=C[C@@H]([NH3+])CC=1C=CC(=CC1)O MetaCyc:CPD-21526|PMID:23281040 chebi_ontology owl:Class CHEBI:142408 biolink:NamedThing arylkylammonium monarch-merged.owl owl:Class CHEBI:144817 biolink:NamedThing 2-ammonio-2-deoxy-D-galactopyranose monarch-merged.owl owl:Class CHEBI:17664 biolink:NamedThing alkylaminium monarch-merged.owl owl:Class CHEBI:49107 biolink:NamedThing thiamine(2+) monarch-merged.owl owl:Class CHEBI:57671 biolink:NamedThing 1-ammonio-1-deoxy-scyllo-inositol monarch-merged.owl owl:Class CHEBI:58001 biolink:NamedThing primary aliphatic ammonium ion The conjugate acid of a primary aliphatic amine. monarch-merged.owl an aliphatic amine|primary aliphatic ammonium cations|primary aliphatic ammonium ions|primary aliphatic ammonium cation +1 CH5NR 31.05710 31.04220 [NH3+]C[*] chebi_ontology owl:Class CHEBI:58731 biolink:NamedThing gamma-L-glutamylputrescinium(1+) monarch-merged.owl owl:Class CHEBI:58918 biolink:NamedThing beta-alaninium amide monarch-merged.owl owl:Class CHEBI:65086 biolink:NamedThing gamma-L-glutamylbutirosin B(3+) monarch-merged.owl owl:Class CHEBI:83234 biolink:NamedThing beta-D-galactosyl-(1<->1')-sphinganine(1+) monarch-merged.owl owl:Class CHEBI:83410 biolink:NamedThing alpha-amino acid ester(1+) monarch-merged.owl owl:Class CHEBI:83412 biolink:NamedThing N(5)-acyl-L-ornithine ester(1+) monarch-merged.owl owl:Class CHEBI:85422 biolink:NamedThing (S)-2-aminopropan-1-ol(1+) monarch-merged.owl owl:Class CHEBI:88332 biolink:NamedThing aralkylammonium monarch-merged.owl owl:Class CHEBI:132987 biolink:NamedThing alliin zwitterion monarch-merged.owl owl:Class CHEBI:133538 biolink:NamedThing L-lysine zwitterion An L-alpha-amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of L-lysine; major species at pH 7.3. monarch-merged.owl Lys|lysine zwitterion|L-lysine|(2S)-6-amino-2-azaniumylhexanoate 0 C6H14N2O2 InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1 KDXKERNSBIXSRK-YFKPBYRVSA-N 146.188 146.10553 [O-]C([C@H](CCCCN)[NH3+])=O chebi_ontology owl:Class CHEBI:133752 biolink:NamedThing epsilon-(gamma-glutamyl)lysine dizwitterion monarch-merged.owl owl:Class CHEBI:134278 biolink:NamedThing S-adenosyl-S-carboxymethyl-L-homocysteine dizwitterion monarch-merged.owl owl:Class CHEBI:134467 biolink:NamedThing L-vinylglycine zwitterion monarch-merged.owl owl:Class CHEBI:134631 biolink:NamedThing L-polyhomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:136765 biolink:NamedThing L-alpha-phenylglycine zwitterion monarch-merged.owl owl:Class CHEBI:136985 biolink:NamedThing S-prenyl-L-cysteine zwitterion monarch-merged.owl owl:Class CHEBI:137935 biolink:NamedThing S-polyprenyl-L-cysteine zwitterion monarch-merged.owl owl:Class CHEBI:139332 biolink:NamedThing 5-chloro-L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:139335 biolink:NamedThing 6-chloro-L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:139336 biolink:NamedThing 6,7-dichloro-L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:142510 biolink:NamedThing isonocardicin A zwitterion monarch-merged.owl owl:Class CHEBI:143285 biolink:NamedThing L-propargylglycine zwitterion monarch-merged.owl owl:Class CHEBI:144729 biolink:NamedThing L-beta-ethynylserine zwitterion monarch-merged.owl owl:Class CHEBI:537519 biolink:NamedThing L-aspartic acid 4-semialdehyde zwitterion monarch-merged.owl owl:Class CHEBI:57555 biolink:NamedThing L-2-amino-4-chloropent-4-enoic acid zwitterion monarch-merged.owl owl:Class CHEBI:57762 biolink:NamedThing L-valine zwitterion monarch-merged.owl owl:Class CHEBI:57912 biolink:NamedThing L-tryptophan zwitterion monarch-merged.owl owl:Class CHEBI:58045 biolink:NamedThing L-isoleucine zwitterion monarch-merged.owl owl:Class CHEBI:58375 biolink:NamedThing trans-4-hydroxy-L-proline zwitterion An L-alpha-amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of trans-4-hydroxy-L-proline; major species at pH 7.3. monarch-merged.owl trans-4-hydroxy-L-proline|(2S,4R)-4-hydroxypyrrolidinium-2-carboxylate|hydroxyproline zwitterion 0 C5H9NO3 InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m1/s1 PMMYEEVYMWASQN-DMTCNVIQSA-N 131.12990 131.05824 O[C@H]1C[NH2+][C@@H](C1)C([O-])=O chebi_ontology owl:Class CHEBI:58441 biolink:NamedThing L-2-aminopentanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:58455 biolink:NamedThing L-2-aminohexanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:58585 biolink:NamedThing L-allothreonine zwitterion monarch-merged.owl owl:Class CHEBI:62637 biolink:NamedThing L-4-hydroxyglutamate semialdehyde zwitterion monarch-merged.owl owl:Class CHEBI:73389 biolink:NamedThing O-ureido-L-serine zwitterion monarch-merged.owl owl:Class CHEBI:74359 biolink:NamedThing L-alpha-aminobutyrate zwitterion monarch-merged.owl owl:Class CHEBI:77860 biolink:NamedThing 3-cyano-L-alanine zwitterion monarch-merged.owl owl:Class CHEBI:78290 biolink:NamedThing L-m-tyrosine zwitterion monarch-merged.owl owl:Class CHEBI:78948 biolink:NamedThing L-2-amino-3-oxobutanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:79191 biolink:NamedThing L-Cys(IAN) zwitterion monarch-merged.owl owl:Class CHEBI:82705 biolink:NamedThing hercynylselenocysteine zwitterion monarch-merged.owl owl:Class CHEBI:82706 biolink:NamedThing hercynylcysteine sulfoxide zwitterion monarch-merged.owl owl:Class CHEBI:82728 biolink:NamedThing S-(5-histidyl)cysteine sulfoxide dizwitterion monarch-merged.owl owl:Class CHEBI:83425 biolink:NamedThing gamma-glutamyltyramine zwitterion monarch-merged.owl owl:Class CHEBI:84310 biolink:NamedThing anticapsin zwitterion monarch-merged.owl owl:Class CHEBI:84331 biolink:NamedThing N(3)-fumaramoyl-(S)-2,3-diaminopropanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:84358 biolink:NamedThing L-dihydroanticapsin zwitterion monarch-merged.owl owl:Class CHEBI:84824 biolink:NamedThing aromatic L-alpha-amino acid zwitterion monarch-merged.owl owl:Class CHEBI:84850 biolink:NamedThing L-selenohomocysteine zwitterion monarch-merged.owl owl:Class CHEBI:87824 biolink:NamedThing methionine sulfone zwitterion monarch-merged.owl owl:Class CHEBI:87826 biolink:NamedThing L-methionine sulfoximine zwitterion monarch-merged.owl owl:Class CHEBI:132988 biolink:NamedThing bradykinin(2+) A peptide cation obtained by deprotonation of the carboxy group and protonation of the amino and guanidino groups of bradykinin; major species at pH 7.3. monarch-merged.owl 1-[(2S)-2-azaniumyl-5-{[azaniumyl(imino)methyl]amino}pentanoyl]-L-prolyl-L-prolylglycyl-L-phenylalanyl-L-seryl-L-prolyl-N-[(1S)-4-{[azaniumyl(imino)methyl]amino}-1-carboxylatobutyl]-L-phenylalaninamide|1-[(2S)-2-azaniumyl-5-carbamimidamidopentanoyl]-L-prolyl-L-prolylglycyl-L-phenylalanyl-L-seryl-L-prolyl-N-[(1S)-4-carbamimidamido-1-carboxylatobutyl]-L-phenylalaninamide +2 C50H75N15O11 InChI=1S/C50H73N15O11/c51-32(16-7-21-56-49(52)53)45(72)65-25-11-20-39(65)47(74)64-24-9-18-37(64)43(70)58-28-40(67)59-34(26-30-12-3-1-4-13-30)41(68)62-36(29-66)46(73)63-23-10-19-38(63)44(71)61-35(27-31-14-5-2-6-15-31)42(69)60-33(48(75)76)17-8-22-57-50(54)55/h1-6,12-15,32-39,66H,7-11,16-29,51H2,(H,58,70)(H,59,67)(H,60,69)(H,61,71)(H,62,68)(H,75,76)(H4,52,53,56)(H4,54,55,57)/p+2/t32-,33-,34-,35-,36-,37-,38-,39-/m0/s1 QXZGBUJJYSLZLT-FDISYFBBSA-P 1062.226 1061.57595 C(=[NH2+])(NCCC[C@@H](C(=O)N1[C@H](C(N2[C@H](C(=O)NCC(N[C@H](C(N[C@H](C(=O)N3[C@H](C(=O)N[C@H](C(N[C@H](C([O-])=O)CCCNC(=[NH2+])N)=O)CC=4C=CC=CC4)CCC3)CO)=O)CC=5C=CC=CC5)=O)CCC2)=O)CCC1)[NH3+])N chebi_ontology owl:Class CHEBI:155837 biolink:NamedThing tripeptide zwitterion A peptide zwitterion obtained from the tranfer of a proton from the carboxy group to the amino group of any tripeptide. It contains an equal number of positively-charged and negatively-charged functional groups. Major structure at pH 7.3. monarch-merged.owl amino acid tripeptide zwitterions|an L-amino acid tripeptide|L-amino acid tripeptide zwitterions|L-amino acid tripeptide zwitterion|amino acid tripeptide zwitterion 0 C6H8N3O4R3 186.146 186.05148 C(=O)([C@@H]([NH3+])*)N[C@H](C(=O)N[C@H](C(=O)[O-])*)* chebi_ontology owl:Class CHEBI:75953 biolink:NamedThing devancoaminyl vancomycin zwitterion monarch-merged.owl owl:Class CHEBI:75954 biolink:NamedThing vancomycin aglycone zwitterion monarch-merged.owl owl:Class CHEBI:84320 biolink:NamedThing dapdiamide A zwitterion monarch-merged.owl owl:Class CHEBI:84321 biolink:NamedThing dapdiamide B zwitterion monarch-merged.owl owl:Class CHEBI:84322 biolink:NamedThing dapdiamide C zwitterion monarch-merged.owl owl:Class CHEBI:84912 biolink:NamedThing dapdiamide E zwitterion monarch-merged.owl owl:Class CHEBI:90799 biolink:NamedThing dipeptide zwitterion Any peptide zwitterion comprising two amino acid residues. Major structure at pH 7.3. monarch-merged.owl a dipeptide 0 C4H6N2O3R2 130.102 130.03784 [NH3+]C(C(NC(C([O-])=O)*)=O)* chebi_ontology owl:Class CHEBI:132992 biolink:NamedThing radiosensitizing agent A drug that makes increases the sensitivity of tumour cells to radiation therapy. monarch-merged.owl radiosensitiser|radiosensitizers|radiosensitizer|radiosensitising agent|radiosensitising agents|radiosensitisers|radiosensitizing agents PMID:12520460|Wikipedia:Radiosensitizer chebi_ontology owl:Class CHEBI:23888 biolink:NamedThing drug Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances. monarch-merged.owl medicine|drugs chebi_ontology owl:Class CHEBI:149552 biolink:NamedThing emetic Any agent that induces nausea and vomiting. monarch-merged.owl emetics chebi_ontology owl:Class CHEBI:35441 biolink:NamedThing antiinfective agent A substance used in the prophylaxis or therapy of infectious diseases. monarch-merged.owl antiinfective drug|anti-infective agents|antiinfective agents|anti-infective drugs chebi_ontology owl:Class CHEBI:35470 biolink:NamedThing central nervous system drug A class of drugs producing both physiological and psychological effects through a variety of mechanisms involving the central nervous system. monarch-merged.owl CNS drugs|central nervous system agents|CNS agent chebi_ontology owl:Class CHEBI:35472 biolink:NamedThing anti-inflammatory drug A substance that reduces or suppresses inflammation. monarch-merged.owl anti-inflammatory drugs|antiinflammatory drugs|antiinflammatory drug|antiinflammatory agent chebi_ontology owl:Class CHEBI:35480 biolink:NamedThing analgesic An agent capable of relieving pain without the loss of consciousness or without producing anaesthesia. In addition, analgesic is a role played by a compound which is exhibited by a capability to cause a reduction of pain symptoms. monarch-merged.owl chebi_ontology owl:Class CHEBI:35493 biolink:NamedThing antipyretic A drug that prevents or reduces fever by lowering the body temperature from a raised state. An antipyretic will not affect the normal body temperature if one does not have fever. Antipyretics cause the hypothalamus to override an interleukin-induced increase in temperature. The body will then work to lower the temperature and the result is a reduction in fever. monarch-merged.owl anti-pyretic owl:Class CHEBI:35498 biolink:NamedThing diuretic An agent that promotes the excretion of urine through its effects on kidney function. monarch-merged.owl diuretics chebi_ontology owl:Class CHEBI:35523 biolink:NamedThing bronchodilator agent An agent that causes an increase in the expansion of a bronchus or bronchial tubes. monarch-merged.owl bronchodilator|broncholytic agent|bronchodilator agents chebi_ontology owl:Class CHEBI:35526 biolink:NamedThing hypoglycemic agent A drug which lowers the blood glucose level. monarch-merged.owl hypoglycemic drugs|hypoglycemic agents|antihyperglycemic agent|antihyperglycemic drugs|antihyperglycemic agents|antihyperglycemic|antihyperglycemics|hypoglycemic drug|antihyperglycemic drug|antidiabetic chebi_ontology owl:Class CHEBI:35554 biolink:NamedThing cardiovascular drug A drug that affects the rate or intensity of cardiac contraction, blood vessel diameter or blood volume. monarch-merged.owl cardiovascular agent|cardiovascular drugs chebi_ontology owl:Class CHEBI:35679 biolink:NamedThing antilipemic drug A substance used to treat hyperlipidemia (an excess of lipids in the blood). monarch-merged.owl lipid-lowering drug|antilipemic|antihyperlipidemic drug|hypolipidemic agent|antihyperlipidemic agent|antihyperlipidemic agents|antihyperlipidaemic agent|antihyperlipemic|hypolipidemic agents|antilipemic drugs|lipid-lowering agents|antihyperlipidaemic drugs|antihyperlipemics|antihyperlipidaemic agents|lipid-lowering agent|antihyperlipidemics|lipid-lowering drugs|antihyperlipidemic drugs|antihyperlipidemic|antihyperlipidaemic drug|antilipemics Wikipedia:Hypolipidemic_agent chebi_ontology owl:Class CHEBI:35842 biolink:NamedThing antirheumatic drug A drug used to treat rheumatoid arthritis. monarch-merged.owl antirheumatic drugs|antirheumatic agent|anti-rheumatic drugs chebi_ontology owl:Class CHEBI:35942 biolink:NamedThing neurotransmitter agent A substance used for its pharmacological action on any aspect of neurotransmitter systems. Neurotransmitter agents include agonists, antagonists, degradation inhibitors, uptake inhibitors, depleters, precursors, and modulators of receptor function. monarch-merged.owl neurotransmitter agents chebi_ontology owl:Class CHEBI:36063 biolink:NamedThing oxytocic A drug that stimulates contraction of the myometrium. Oxytocics are used to induce labour, obstetric at term, to prevent or control postpartum or postabortion haemorrhage, and to assess foetal status in high risk pregnancies. They may also be used alone or with other drugs to induce abortions (abortifacients). monarch-merged.owl oxytocic|uterine stimulants|oxytocic agents|oxytocic drugs chebi_ontology owl:Class CHEBI:38867 biolink:NamedThing anaesthetic Substance which produces loss of feeling or sensation. monarch-merged.owl anesthetic agent|Anaesthetikum|anesthetic drug|Anaesthetika|anaesthetics|anesthetics|anaesthetic chebi_ontology owl:Class CHEBI:47868 biolink:NamedThing photosensitizing agent A chemical compound that can be excited by light of a specific wavelength and subsequently transfer energy to a chosen reactant. This is commonly molecular oxygen within a cancer tissue, which is converted to (highly rective) singlet state oxygen. This rapidly reacts with any nearby biomolecules, ultimately killing the cancer cells. monarch-merged.owl photosensitising agent chebi_ontology owl:Class CHEBI:48676 biolink:NamedThing fibrin modulating drug monarch-merged.owl owl:Class CHEBI:49110 biolink:NamedThing peripheral nervous system drug A drug that acts principally at one or more sites within the peripheral neuroeffector systems, the autonomic system, and motor nerve-skeletal system. monarch-merged.owl peripheral nervous system drugs|peripheral nervous system agent chebi_ontology owl:Class CHEBI:49167 biolink:NamedThing anti-asthmatic drug A drug used to treat asthma. monarch-merged.owl anti-asthmatic drugs|anti-asthmatic agents|anti-asthmatic agent chebi_ontology owl:Class CHEBI:50141 biolink:NamedThing bronchoconstrictor agent monarch-merged.owl owl:Class CHEBI:50177 biolink:NamedThing dermatologic drug A drug used to treat or prevent skin disorders or for the routine care of skin. monarch-merged.owl dermatologic drugs|dermatologic agent|dermatological agent chebi_ontology owl:Class CHEBI:50248 biolink:NamedThing hematologic agent Drug that acts on blood and blood-forming organs and those that affect the hemostatic system. monarch-merged.owl hematologic agents chebi_ontology owl:Class CHEBI:50266 biolink:NamedThing prodrug A compound that, on administration, must undergo chemical conversion by metabolic processes before becoming the pharmacologically active drug for which it is a prodrug. monarch-merged.owl Prodrugs PMID:25269430|PMID:28215138|PMID:26184144|PMID:24329110|PMID:24709544|PMID:25391982|Wikipedia:Prodrug|PMID:28070577|PMID:23998799|PMID:24628402|PMID:25795057|PMID:28329729|PMID:28319647|PMID:28219047|PMID:28334528|PMID:25157234|PMID:23993918|PMID:25591121|PMID:28259775|PMID:25144792|PMID:26028253|PMID:25620096 chebi_ontology owl:Class CHEBI:50267 biolink:NamedThing protective agent Synthetic or natural substance which is given to prevent a disease or disorder or are used in the process of treating a disease or injury due to a poisonous agent. monarch-merged.owl chemoprotective agent|chemoprotectants|protective agents|chemoprotective agents|chemoprotectant chebi_ontology owl:Class CHEBI:50503 biolink:NamedThing laxative An agent that produces a soft formed stool, and relaxes and loosens the bowels, typically used over a protracted period, to relieve constipation. Compare with cathartic, which is a substance that accelerates defecation. A substances can be both a laxative and a cathartic. monarch-merged.owl purgatives|aperients|laxante|purgative|laxatives|aperient chebi_ontology owl:Class CHEBI:50513 biolink:NamedThing mydriatic agent Agent that dilates the pupil. Used in eye diseases and to facilitate eye examination. It may be either a sympathomimetic or parasympatholytic. The latter cause cycloplegia or paralysis of accommodation at high doses and may precipitate glaucoma. monarch-merged.owl mydriatics chebi_ontology owl:Class CHEBI:50646 biolink:NamedThing bone density conservation agent An agent that inhibits bone resorption and/or favor bone mineralization and bone regeneration. Used to heal bone fractures and to treat bone diseases such as osteopenia and osteoporosis. monarch-merged.owl anti-osteoporosis agents|antiosteoporotic|bone density conservation drugs|anti-osteoporotic|anti-osteoporotic drugs|anti-osteoporotic agents|anti-osteopenia agents|anti-osteoporotic drug|anti-osteopenia drug|anti-osteoporosis drug|anti-osteoporosis drugs|bone density conservation agents|anti-osteopenia drugs|anti-osteoporotic agent|anti-osteoporotics|anti-osteoporosis agent|anti-osteopenia agent|bone density conservation drug|antiosteoporotics Wikipedia:Osteoporosis CHEBI:72497 chebi_ontology owl:Class CHEBI:50689 biolink:NamedThing reproductive control drug A substance used either in the prevention or facilitation of pregnancy. monarch-merged.owl reproductive control agent|reproductive control drugs chebi_ontology owl:Class CHEBI:50733 biolink:NamedThing nutraceutical A product in capsule, tablet or liquid form that provide essential nutrients, such as a vitamin, an essential mineral, a protein, an herb, or similar nutritional substance. monarch-merged.owl Dietary Supplement|Food Supplementation|Nutritional supplement chebi_ontology owl:Class CHEBI:50751 biolink:NamedThing anti-estrogen monarch-merged.owl owl:Class CHEBI:50780 biolink:NamedThing appetite regulator An agent which regulates the physiologic mechanisms that control the appetite and food intake. monarch-merged.owl appetite regulators chebi_ontology owl:Class CHEBI:50846 biolink:NamedThing immunomodulator Biologically active substance whose activity affects or plays a role in the functioning of the immune system. monarch-merged.owl immunomodulators|Immune factor|Immunologic factor|Biomodulator|Immunological factor Wikipedia:Immunotherapy chebi_ontology owl:Class CHEBI:50857 biolink:NamedThing anti-allergic agent A drug used to treat allergic reactions. monarch-merged.owl anti-allergic drug|anti-allergic drugs|anti-allergic agents chebi_ontology owl:Class CHEBI:50919 biolink:NamedThing antiemetic monarch-merged.owl owl:Class CHEBI:50926 biolink:NamedThing angiogenesis modulating agent monarch-merged.owl owl:Class CHEBI:51061 biolink:NamedThing hormone receptor modulator A drug that modulates the function of the endocrine glands, the biosynthesis of their secreted hormones, or the action of hormones upon their specific sites. monarch-merged.owl hormone receptor modulators chebi_ontology owl:Class CHEBI:51177 biolink:NamedThing antitussive monarch-merged.owl owl:Class CHEBI:51372 biolink:NamedThing neuromuscular agent A drug used for its actions on skeletal muscle. monarch-merged.owl chebi_ontology owl:Class CHEBI:52726 biolink:NamedThing proteasome inhibitor monarch-merged.owl owl:Class CHEBI:59864 biolink:NamedThing depigmentation drug monarch-merged.owl owl:Class CHEBI:65265 biolink:NamedThing antacid Any substance which is used to neutralise stomach acidity. monarch-merged.owl antacids Wikipedia:Antacid chebi_ontology owl:Class CHEBI:66956 biolink:NamedThing antidyskinesia agent Any compound which can be used to treat or alleviate the symptoms of dyskinesia. monarch-merged.owl antidyskinesia drug|antidyskinetic drugs|antidyskinetic agents|antidyskinetic agent|antidyskinesia agents|antidyskinesia drugs|antidyskinetic drug owl:Class CHEBI:66980 biolink:NamedThing nootropic agent monarch-merged.owl owl:Class CHEBI:66981 biolink:NamedThing ophthalmology drug monarch-merged.owl owl:Class CHEBI:73336 biolink:NamedThing vulnerary A drug used in treating and healing of wounds. monarch-merged.owl wound-healing agent|wound-healing drug|vulneraries|wound-healing agents|wound-healing drugs Wikipedia:Wound_healing chebi_ontology owl:Class CHEBI:74783 biolink:NamedThing astringent A compound that causes the contraction of body tissues, typically used to reduce bleeding from minor abrasions. monarch-merged.owl adstringents|adstringent|astringents Wikipedia:Astringent chebi_ontology owl:Class CHEBI:77034 biolink:NamedThing mucolytic monarch-merged.owl owl:Class CHEBI:77035 biolink:NamedThing expectorant Compounds that are considered to increase the volume of secretions in the respiratory tract, so facilitating their removal by ciliary action and coughing. Compare with mucolytics, which decrease the viscosity of mucus, facilitating its removal by ciliary action and expectoration, and antitussives, which suppress the cough reflex. monarch-merged.owl expectorants PMID:17594730 chebi_ontology owl:Class CHEBI:77715 biolink:NamedThing nasal decongestant monarch-merged.owl owl:Class CHEBI:86327 biolink:NamedThing antifungal drug Any antifungal agent used to prevent or treat fungal infections in humans or animals. monarch-merged.owl anti-fungal drug|antifungal medication|anti-fungal medication|antifungal drugs|pharmaceutical fungicides|pharmaceutical fungicide|antifungal medications|anti-fungal medications|anti-fungal drugs Wikipedia:Antifungal chebi_ontology owl:Class CHEBI:88188 biolink:NamedThing drug allergen Any drug which causes the onset of an allergic reaction. monarch-merged.owl allergenic drug chebi_ontology owl:Class CHEBI:90710 biolink:NamedThing receptor modulator A drug that acts as an antagonist, agonist, reverse agonist, or in some other fashion when interacting with cellular receptors. monarch-merged.owl receptor modulators chebi_ontology owl:Class CHEBI:133000 biolink:NamedThing pregnenolone sulfate(1-) monarch-merged.owl owl:Class CHEBI:59696 biolink:NamedThing steroid sulfate oxoanion monarch-merged.owl owl:Class CHEBI:133105 biolink:NamedThing (3alpha,5alpha,17beta)-3-hydroxyandrostan-17-yl sulfate(1-) monarch-merged.owl owl:Class CHEBI:133940 biolink:NamedThing lithocholate sulfate(2-) monarch-merged.owl owl:Class CHEBI:136566 biolink:NamedThing (24S)-hydroxycholesterol 24-sulfate(1-) monarch-merged.owl owl:Class CHEBI:136567 biolink:NamedThing (24S)-hydroxycholesterol 3-sulfate(1-) monarch-merged.owl owl:Class CHEBI:136568 biolink:NamedThing (24S)-hydroxycholesterol 3,24-disulfate(2-) monarch-merged.owl owl:Class CHEBI:136579 biolink:NamedThing cholesterol sulfate(1-) monarch-merged.owl owl:Class CHEBI:136582 biolink:NamedThing 17beta-estradiol 3-sulfate(1-) monarch-merged.owl owl:Class CHEBI:136982 biolink:NamedThing 5alpha-dihydrotestosterone sulfate(1-) monarch-merged.owl owl:Class CHEBI:136983 biolink:NamedThing (3beta,5alpha,17beta)-3-hydroxyandrostan-17-yl sulfate(1-) monarch-merged.owl owl:Class CHEBI:57782 biolink:NamedThing cortisol 21-sulfate(1-) monarch-merged.owl owl:Class CHEBI:57905 biolink:NamedThing dehydroepiandrosterone sulfate(1-) monarch-merged.owl owl:Class CHEBI:58301 biolink:NamedThing taurolithocholic acid sulfate(2-) monarch-merged.owl owl:Class CHEBI:58808 biolink:NamedThing 5beta-scymnol sulfate(1-) monarch-merged.owl owl:Class CHEBI:58809 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5alpha-cholan-24-yl sulfate(1-) monarch-merged.owl owl:Class CHEBI:58877 biolink:NamedThing glycochenodeoxycholate 7-sulfate(2-) monarch-merged.owl owl:Class CHEBI:60050 biolink:NamedThing estrone 3-sulfate(1-) monarch-merged.owl owl:Class CHEBI:87538 biolink:NamedThing 16alpha-hydroxydehydroepiandrosterone 3-sulfate(1-) monarch-merged.owl owl:Class CHEBI:133004 biolink:NamedThing bisbenzylisoquinoline alkaloid monarch-merged.owl owl:Class CHEBI:22750 biolink:NamedThing benzylisoquinoline alkaloid monarch-merged.owl owl:Class CHEBI:134199 biolink:NamedThing (S)-tembetarine monarch-merged.owl owl:Class CHEBI:134209 biolink:NamedThing aporphine alkaloid monarch-merged.owl owl:Class CHEBI:23347 biolink:NamedThing coclaurine monarch-merged.owl owl:Class CHEBI:25591 biolink:NamedThing norcoclaurine monarch-merged.owl owl:Class CHEBI:26533 biolink:NamedThing reticuline monarch-merged.owl owl:Class CHEBI:28770 biolink:NamedThing norlaudanosoline monarch-merged.owl owl:Class CHEBI:144644 biolink:NamedThing a tetracycline zwittterion monarch-merged.owl a tetracycline owl:Class CHEBI:67265 biolink:NamedThing beta-diketone monarch-merged.owl owl:Class CHEBI:137015 biolink:NamedThing 3-dehydro-scyllo-inosose monarch-merged.owl owl:Class CHEBI:14750 biolink:NamedThing acetylacetone monarch-merged.owl owl:Class CHEBI:1506 biolink:NamedThing 3-fumarylpyruvic acid monarch-merged.owl owl:Class CHEBI:16111 biolink:NamedThing nonane-4,6-dione monarch-merged.owl owl:Class CHEBI:16558 biolink:NamedThing triacetic acid monarch-merged.owl owl:Class CHEBI:17766 biolink:NamedThing cyclohexane-1,3-dione monarch-merged.owl owl:Class CHEBI:2424 biolink:NamedThing acetylpyruvic acid monarch-merged.owl owl:Class CHEBI:30859 biolink:NamedThing 3-maleylpyruvic acid monarch-merged.owl owl:Class CHEBI:30907 biolink:NamedThing 4-fumarylacetoacetic acid monarch-merged.owl owl:Class CHEBI:47904 biolink:NamedThing 4-maleylacetoacetic acid monarch-merged.owl owl:Class CHEBI:47940 biolink:NamedThing 4,6-dioxohept-2-enedioic acid monarch-merged.owl owl:Class CHEBI:67263 biolink:NamedThing tetrahydrocurcumin monarch-merged.owl owl:Class CHEBI:9440 biolink:NamedThing tenuazonic acid monarch-merged.owl owl:Class CHEBI:76224 biolink:NamedThing aromatic ketone monarch-merged.owl owl:Class CHEBI:134316 biolink:NamedThing 2-acylphloroglucinol monarch-merged.owl owl:Class CHEBI:22187 biolink:NamedThing acetophenones monarch-merged.owl owl:Class CHEBI:22726 biolink:NamedThing benzophenones monarch-merged.owl owl:Class CHEBI:34892 biolink:NamedThing nocodazole monarch-merged.owl owl:Class CHEBI:425902 biolink:NamedThing propiophenone monarch-merged.owl owl:Class CHEBI:51507 biolink:NamedThing benzil monarch-merged.owl owl:Class CHEBI:51586 biolink:NamedThing benzoins monarch-merged.owl owl:Class CHEBI:51853 biolink:NamedThing benzoyl cyanide monarch-merged.owl owl:Class CHEBI:63552 biolink:NamedThing 1-phenyl-1,2-propanedione monarch-merged.owl owl:Class CHEBI:64344 biolink:NamedThing 2',4',6'-trihydroxyacetophenone monarch-merged.owl owl:Class CHEBI:64497 biolink:NamedThing cspyrone B1 monarch-merged.owl owl:Class CHEBI:66879 biolink:NamedThing 4-oxo-4-(pyridin-3-yl)butanal monarch-merged.owl owl:Class CHEBI:66946 biolink:NamedThing 4-(6-hydroxypyridin-3-yl)-4-oxobutyric acid monarch-merged.owl owl:Class CHEBI:71230 biolink:NamedThing dihydrochalcones monarch-merged.owl owl:Class CHEBI:78688 biolink:NamedThing 2,4-diacetylphloroglucinol monarch-merged.owl owl:Class CHEBI:90396 biolink:NamedThing (3,5-dichloro-2,4,6-trihydroxyphenyl)hexan-1-one monarch-merged.owl owl:Class CHEBI:133041 biolink:NamedThing L-leucyl-L-glutamyl zwitterionic residue monarch-merged.owl owl:Class CHEBI:64768 biolink:NamedThing zwitterionic group monarch-merged.owl owl:Class CHEBI:133042 biolink:NamedThing L-leucyl-L-aspartyl zwitterionic residue monarch-merged.owl owl:Class CHEBI:133045 biolink:NamedThing L-methionyl-L-aspartyl zwitterionic residue monarch-merged.owl owl:Class CHEBI:133359 biolink:NamedThing L-methionyl-L-glutamyl zwitterionic residue monarch-merged.owl owl:Class CHEBI:137997 biolink:NamedThing O-[S-4-(aminobutanoyl)pantetheine-4'-phosphoryl]serine zwitterionic residue monarch-merged.owl owl:Class CHEBI:138175 biolink:NamedThing O-[S-(L-alpha-aminoacyl)pantetheine-4'-phosphoryl]serine zwitterionic residue monarch-merged.owl owl:Class CHEBI:138334 biolink:NamedThing N(tele)-(N(7)-methylguanosine 5'-phosphonato)-L-histidine zwitterion residue monarch-merged.owl owl:Class CHEBI:138803 biolink:NamedThing archaeosine 5'-phosphate zwitterionic residue monarch-merged.owl owl:Class CHEBI:140632 biolink:NamedThing 5-methylaminomethyl-S-(2E)-geranyl-thiouridine 5'-monophosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:64720 biolink:NamedThing L-alpha-aspartyl zwitterionic group monarch-merged.owl owl:Class CHEBI:64721 biolink:NamedThing L-alpha-glutamyl zwitterionic group monarch-merged.owl owl:Class CHEBI:74275 biolink:NamedThing 7-[(3S)-(3-amino-3-methoxycarbonyl)propyl]wyosine 5'-phosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:74454 biolink:NamedThing 5-aminomethyl-2-thiouridine 5'-monophosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:74455 biolink:NamedThing 5-methylaminomethyl-2-thiouridine 5'-monophosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:74480 biolink:NamedThing N(7)-methylguanosine 5'-phosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:78494 biolink:NamedThing 3'-(L-leucyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78497 biolink:NamedThing 3'-(L-alanyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78517 biolink:NamedThing 3'-(L-cysteinyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78521 biolink:NamedThing 3'-(L-glutaminyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78522 biolink:NamedThing 3'-glycyladenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78528 biolink:NamedThing 3'-(L-isoleucyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78530 biolink:NamedThing 3'-(L-methionyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78532 biolink:NamedThing 3'-(L-prolyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78537 biolink:NamedThing 3'-(L-valyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78556 biolink:NamedThing 3'-(L-pyrrolysyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:78599 biolink:NamedThing (gamma-L-glutamyl) N-terminal alpha-amino-acid zwitterionic residue monarch-merged.owl owl:Class CHEBI:79333 biolink:NamedThing 3'-(D-alpha-aminoacyl)adenylyl zwitterionic group monarch-merged.owl owl:Class CHEBI:82696 biolink:NamedThing diphthine betaine residue monarch-merged.owl owl:Class CHEBI:82743 biolink:NamedThing 5-methylaminomethyl-2-selenouridine 5'-monophosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:82831 biolink:NamedThing queuosine 5'-phosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:82833 biolink:NamedThing 7-aminomethyl-7-carbaguanine 5'-phosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:82834 biolink:NamedThing epoxyqueuosine 5'-phosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:83665 biolink:NamedThing lysidine monophosphate zwitterion residue monarch-merged.owl owl:Class CHEBI:85339 biolink:NamedThing O-[S-(L-alloisoleucyl)pantetheine-4'-phosphoryl]serine zwitterionic residue monarch-merged.owl owl:Class CHEBI:90783 biolink:NamedThing C-terminal S-(Gly-Gly)-L-Cys zwitterion residue monarch-merged.owl owl:Class CHEBI:133043 biolink:NamedThing L-leucyl-L-lysyl(2+) group monarch-merged.owl owl:Class CHEBI:134400 biolink:NamedThing cationic peptidyl group monarch-merged.owl owl:Class CHEBI:133044 biolink:NamedThing L-leucyl-L-arginyl(2+) group monarch-merged.owl owl:Class CHEBI:133356 biolink:NamedThing L-methionyl-L-asparaginyl(1+) residue monarch-merged.owl owl:Class CHEBI:133361 biolink:NamedThing L-methionyl-L-glutaminyl(1+) residue monarch-merged.owl owl:Class CHEBI:133377 biolink:NamedThing L-methionyl-L-leucyl(1+) residue monarch-merged.owl owl:Class CHEBI:133380 biolink:NamedThing L-methionyl-L-isoleucyl(1+) residue monarch-merged.owl owl:Class CHEBI:133383 biolink:NamedThing L-methionyl-L-phenylalanyl(1+) residue monarch-merged.owl owl:Class CHEBI:133385 biolink:NamedThing L-methionyl-L-tyrosyl(1+) residue monarch-merged.owl owl:Class CHEBI:133387 biolink:NamedThing L-methionyl-L-tryptophyl(1+) residue monarch-merged.owl owl:Class CHEBI:133398 biolink:NamedThing L-methionyl-L-alanyl(1+) residue monarch-merged.owl owl:Class CHEBI:133401 biolink:NamedThing L-methionyl-L-seryl(1+) residue monarch-merged.owl owl:Class CHEBI:133403 biolink:NamedThing L-methionyl-L-valyl(1+) residue monarch-merged.owl owl:Class CHEBI:133405 biolink:NamedThing L-methionyl-L-threonyl(1+) residue monarch-merged.owl owl:Class CHEBI:133406 biolink:NamedThing N-acetyl-L-methionyl-L-lysyl(1+) residue monarch-merged.owl owl:Class CHEBI:133407 biolink:NamedThing L-methionyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138057 biolink:NamedThing N-terminal L-alanyl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138058 biolink:NamedThing N-terminal N-methyl-L-alanyl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138059 biolink:NamedThing N-terminal L-prolyl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138060 biolink:NamedThing N-terminal N-methyl-L-prolyl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138061 biolink:NamedThing N-terminal L-seryl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138062 biolink:NamedThing N-terminal N-methyl-L-seryl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138286 biolink:NamedThing N-terminal N,N-dimethyl-L-alanyl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138315 biolink:NamedThing N-terminal N,N,N-trimethyl-L-alanyl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138316 biolink:NamedThing N-terminal N,N-dimethyl-L-seryl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138317 biolink:NamedThing N-terminal N,N,N-trimethyl-L-seryl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:138318 biolink:NamedThing N-terminal N,N-dimethyl-L-prolyl-L-prolyl-L-lysyl(2+) residue monarch-merged.owl owl:Class CHEBI:133050 biolink:NamedThing N-tetradecanoylglycyl group monarch-merged.owl owl:Class CHEBI:27207 biolink:NamedThing univalent carboacyl group A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid. monarch-merged.owl univalent carboxylic acyl groups|univalent acyl group|univalent carboacyl groups chebi_ontology owl:Class CHEBI:134472 biolink:NamedThing N-acyl-alpha-aminoacyl group monarch-merged.owl owl:Class CHEBI:22487 biolink:NamedThing alpha-aminoacyl group monarch-merged.owl owl:Class CHEBI:23004 biolink:NamedThing carbamoyl group The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid. monarch-merged.owl carbamyl group|carboxamide|-C(O)NH2|carbamoyl|carbamyl|-CONH2|aminocarbonyl 0 CH2NO 44.03272 44.01364 *C(N)=O PMID:24168430 chebi_ontology owl:Class CHEBI:24027 biolink:NamedThing fatty-acyl group monarch-merged.owl owl:Class CHEBI:24190 biolink:NamedThing gamma-glutamyl group monarch-merged.owl owl:Class CHEBI:25613 biolink:NamedThing nucleotidyl group monarch-merged.owl owl:Class CHEBI:25907 biolink:NamedThing peptidyl group monarch-merged.owl owl:Class CHEBI:42485 biolink:NamedThing formyl group monarch-merged.owl FORMYL GROUP|H-CO-|carbaldehyde|aldehyde group|Fo|-CH(O)|methanoyl|-CHO|formyl 0 CHO 29.01804 29.00274 [H]C(*)=O PDBeChem:FOR CHEBI:42480|CHEBI:24089 chebi_ontology owl:Class CHEBI:133103 biolink:NamedThing (3alpha,5alpha,17beta)-3-hydroxyandrostan-17-yl sulfate monarch-merged.owl owl:Class CHEBI:138032 biolink:NamedThing (3beta,5alpha,17beta)-3-hydroxyandrostan-17-yl sulfate monarch-merged.owl owl:Class CHEBI:133517 biolink:NamedThing 5alpha-androstane-3alpha,17beta-diol 17-glucosiduronic acid monarch-merged.owl owl:Class CHEBI:134216 biolink:NamedThing muricholic acids monarch-merged.owl owl:Class CHEBI:138401 biolink:NamedThing 3alpha,7beta-dihydroxy-12-oxo-5beta-cholanic acid monarch-merged.owl owl:Class CHEBI:16359 biolink:NamedThing cholic acid monarch-merged.owl owl:Class CHEBI:16496 biolink:NamedThing 5beta-cholestane-3alpha,7alpha,12alpha-triol monarch-merged.owl owl:Class CHEBI:17278 biolink:NamedThing 5beta-cholestane-3alpha,7alpha,12alpha,26-tetrol monarch-merged.owl owl:Class CHEBI:18402 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oic acid monarch-merged.owl owl:Class CHEBI:28047 biolink:NamedThing 5beta-cholestane-3alpha,7alpha-diol monarch-merged.owl owl:Class CHEBI:363227 biolink:NamedThing 6alpha,20xi-murideoxycholic acid monarch-merged.owl owl:Class CHEBI:48742 biolink:NamedThing 3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestan-26-oic acid monarch-merged.owl owl:Class CHEBI:50106 biolink:NamedThing 5beta-scymnol monarch-merged.owl owl:Class CHEBI:50108 biolink:NamedThing 5alpha-cholane-3alpha,7alpha,12alpha,24-tetrol monarch-merged.owl owl:Class CHEBI:52022 biolink:NamedThing taurohyocholic acid monarch-merged.owl owl:Class CHEBI:52030 biolink:NamedThing murideoxycholic acid monarch-merged.owl owl:Class CHEBI:81240 biolink:NamedThing ursocholic acid monarch-merged.owl owl:Class CHEBI:81276 biolink:NamedThing allodeoxycholic acid monarch-merged.owl owl:Class CHEBI:81308 biolink:NamedThing allocholic acid monarch-merged.owl owl:Class CHEBI:82679 biolink:NamedThing 7-oxolithocholic acid monarch-merged.owl owl:Class CHEBI:37948 biolink:NamedThing oxaspiro compound A spiro compound in which at least one of the cyclic components is an oxygen heterocyle. monarch-merged.owl oxaspiro compounds chebi_ontology owl:Class CHEBI:138233 biolink:NamedThing 9,13(R)-epoxylabd-14-ene monarch-merged.owl owl:Class CHEBI:26745 biolink:NamedThing spirostan monarch-merged.owl owl:Class CHEBI:64535 biolink:NamedThing pseurotin A monarch-merged.owl owl:Class CHEBI:64551 biolink:NamedThing fumiquinazoline C monarch-merged.owl owl:Class CHEBI:72600 biolink:NamedThing spiroketal A cyclic ketal in which the ketal carbon is the only common atom of two rings. monarch-merged.owl spiroacetal|spiroketals|spiroacetals PMID:21604735|PMID:22421755|PMID:19262920|PMID:21860857|PMID:21076755|PMID:20024126 chebi_ontology owl:Class CHEBI:133135 biolink:NamedThing chromenochromene monarch-merged.owl owl:Class CHEBI:38166 biolink:NamedThing organic heteropolycyclic compound monarch-merged.owl organic heteropolycyclic compounds CHEBI:38075|CHEBI:25429 chebi_ontology owl:Class CHEBI:22720 biolink:NamedThing benzodiazepine monarch-merged.owl owl:Class CHEBI:22727 biolink:NamedThing benzopyran monarch-merged.owl benzopyrans Wikipedia:Benzopyran chebi_ontology owl:Class CHEBI:24922 biolink:NamedThing isoquinolines A class of organic heteropolycyclic compound consisting of isoquinoline and its substitution derivatives. monarch-merged.owl chebi_ontology owl:Class CHEBI:26979 biolink:NamedThing organic heterotricyclic compound An organic tricyclic compound in which at least one of the rings of the tricyclic skeleton contains one or more heteroatoms. monarch-merged.owl organic heterotricyclic compounds|heterotricyclic compounds chebi_ontology owl:Class CHEBI:27171 biolink:NamedThing organic heterobicyclic compound monarch-merged.owl organic heterobicyclic compounds|heterobicyclic compounds chebi_ontology owl:Class CHEBI:35259 biolink:NamedThing benzofurans monarch-merged.owl owl:Class CHEBI:38163 biolink:NamedThing organic heterotetracyclic compound monarch-merged.owl owl:Class CHEBI:38165 biolink:NamedThing organic heterooctacyclic compound monarch-merged.owl owl:Class CHEBI:38518 biolink:NamedThing benzophenanthridine monarch-merged.owl owl:Class CHEBI:38834 biolink:NamedThing benzofurochromene monarch-merged.owl owl:Class CHEBI:39203 biolink:NamedThing dibenzopyran monarch-merged.owl owl:Class CHEBI:51914 biolink:NamedThing organic heterohexacyclic compound monarch-merged.owl owl:Class CHEBI:51915 biolink:NamedThing indolocarbazole monarch-merged.owl owl:Class CHEBI:52157 biolink:NamedThing organic heteroheptacyclic compound monarch-merged.owl owl:Class CHEBI:59535 biolink:NamedThing pyrimidoquinolines monarch-merged.owl owl:Class CHEBI:64545 biolink:NamedThing fumiquinazoline monarch-merged.owl owl:Class CHEBI:91003 biolink:NamedThing asperlicins monarch-merged.owl owl:Class CHEBI:133172 biolink:NamedThing 2-hydroxydecanoic acid monarch-merged.owl owl:Class CHEBI:37258 biolink:NamedThing 2-hydroxyphytanic acid monarch-merged.owl owl:Class CHEBI:59783 biolink:NamedThing 2-hydroxy-4-methylvaleric acid monarch-merged.owl owl:Class CHEBI:61302 biolink:NamedThing cerebronic acid monarch-merged.owl owl:Class CHEBI:76036 biolink:NamedThing (R)-2-hydroxylignoceric acid monarch-merged.owl owl:Class CHEBI:76234 biolink:NamedThing (R)-2-hydroxy-alpha-linolenic acid monarch-merged.owl owl:Class CHEBI:76986 biolink:NamedThing 2-hydroxyhexacosanoic acid monarch-merged.owl owl:Class CHEBI:84854 biolink:NamedThing 2-hydroxyheptadecanoic acid monarch-merged.owl owl:Class CHEBI:17130 biolink:NamedThing 10-oxocapric acid monarch-merged.owl owl:Class CHEBI:28837 biolink:NamedThing octanoic acid monarch-merged.owl owl:Class CHEBI:29019 biolink:NamedThing nonanoic acid monarch-merged.owl owl:Class CHEBI:30776 biolink:NamedThing hexanoic acid A C6, straight-chain saturated fatty acid. monarch-merged.owl capronic acid|1-hexanoic acid|butylacetic acid|pentiformic acid|Hexanoate|n-hexoic acid|1-pentanecarboxylic acid|n-hexanoic acid|6:0|pentylformic acid|n-hexylic acid|n-Caproic acid|CH3-[CH2]4-COOH|Hexylic acid|HEXANOIC ACID|Hexanoic acid|hexanoic acid|caproic acid|C6:0|Pentanecarboxylic acid|hexoic acid 0 C6H12O2 InChI=1S/C6H12O2/c1-2-3-4-5-6(7)8/h2-5H2,1H3,(H,7,8) FUZZWVXGSFPDMH-UHFFFAOYSA-N 116.15830 116.08373 CCCCCC(O)=O MetaCyc:HEXANOATE|CAS:142-62-1|Reaxys:773837|Wikipedia:Hexanoic_acid|LIPID_MAPS_instance:LMFA01010006|KEGG:C01585|Beilstein:773837|YMDB:YMDB01424|Gmelin:185066|ECMDB:ECMDB21229|PMID:1556177|PDBeChem:6NA|PMID:24357269|PMID:10685018|KNApSAcK:C00001218|HMDB:HMDB0000535|PMID:24924750 CHEBI:24571|CHEBI:5702|CHEBI:40213 chebi_ontology owl:Class CHEBI:30805 biolink:NamedThing dodecanoic acid monarch-merged.owl owl:Class CHEBI:30813 biolink:NamedThing decanoic acid monarch-merged.owl owl:Class CHEBI:32368 biolink:NamedThing undecanoic acid monarch-merged.owl owl:Class CHEBI:36206 biolink:NamedThing 3-hydroxylauric acid monarch-merged.owl owl:Class CHEBI:37108 biolink:NamedThing 7-methyloctanoic acid monarch-merged.owl owl:Class CHEBI:45571 biolink:NamedThing heptanoic acid monarch-merged.owl owl:Class CHEBI:63864 biolink:NamedThing 4,8-dimethylnonanoic acid monarch-merged.owl owl:Class CHEBI:74903 biolink:NamedThing isocaproic acid monarch-merged.owl owl:Class CHEBI:78700 biolink:NamedThing 9-oxononanoic acid monarch-merged.owl owl:Class CHEBI:85059 biolink:NamedThing 3-methylundecanoic acid monarch-merged.owl owl:Class CHEBI:133514 biolink:NamedThing 2-hydroxyoctanoate monarch-merged.owl owl:Class CHEBI:133577 biolink:NamedThing 2-hydroxy-4-methylvalerate monarch-merged.owl owl:Class CHEBI:133791 biolink:NamedThing 2-hydroxybutyrates monarch-merged.owl owl:Class CHEBI:139187 biolink:NamedThing 2-hydroxy fatty acid anion 14:0 monarch-merged.owl owl:Class CHEBI:139189 biolink:NamedThing 2-hydroxy fatty acid anion 16:0 monarch-merged.owl owl:Class CHEBI:139191 biolink:NamedThing 2-hydroxy fatty acid anion 18:0 monarch-merged.owl owl:Class CHEBI:139195 biolink:NamedThing 2-hydroxy fatty acid anion 22:0 monarch-merged.owl owl:Class CHEBI:139197 biolink:NamedThing 2-hydroxy fatty acid anion 24:0 monarch-merged.owl owl:Class CHEBI:139199 biolink:NamedThing 2-hydroxy fatty acid anion 26:0 monarch-merged.owl owl:Class CHEBI:141772 biolink:NamedThing 2-hydroxydodecanoate monarch-merged.owl owl:Class CHEBI:19641 biolink:NamedThing 2-hydroxyisobutyrate monarch-merged.owl owl:Class CHEBI:37319 biolink:NamedThing 2-hydroxypenta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:60886 biolink:NamedThing (2E)-2-hydroxypenta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:139300 biolink:NamedThing (+)-jasmonic acid monarch-merged.owl owl:Class CHEBI:17094 biolink:NamedThing 2-dehydropantoic acid monarch-merged.owl owl:Class CHEBI:18292 biolink:NamedThing jasmonic acid monarch-merged.owl owl:Class CHEBI:27819 biolink:NamedThing clavaldehyde monarch-merged.owl owl:Class CHEBI:31178 biolink:NamedThing aklanonic acid monarch-merged.owl owl:Class CHEBI:31915 biolink:NamedThing nogalonic acid monarch-merged.owl owl:Class CHEBI:35950 biolink:NamedThing 4-oxo monocarboxylic acid monarch-merged.owl 4-oxo acid|4-oxo monocarboxylic acids chebi_ontology owl:Class CHEBI:35951 biolink:NamedThing dioxo monocarboxylic acid monarch-merged.owl owl:Class CHEBI:35983 biolink:NamedThing 7-oxo monocarboxylic acid monarch-merged.owl owl:Class CHEBI:52669 biolink:NamedThing 2-amino-4,5-dihydroxy-6-oxo-7-(phosphonooxy)heptanoic acid monarch-merged.owl owl:Class CHEBI:16486 biolink:NamedThing cyclopentanone monarch-merged.owl owl:Class CHEBI:27823 biolink:NamedThing (5-hydroxyindol-3-yl)acetic acid A member of the class of indole-3-acetic acids that is indole-3-acetic acid substituted by a hydroxy group at C-5. monarch-merged.owl 5-Hydroxyindol-3-ylacetic acid|5-Hydroxyindole-3-acetic acid|(5-hydroxy-1H-indol-3-yl)acetic acid|5-Hydroxy-1H-indole-3-acetic acid|5-HIAA|5-Hydroxyindoleacetic acid 0 C10H9NO3 InChI=1S/C10H9NO3/c12-7-1-2-9-8(4-7)6(5-11-9)3-10(13)14/h1-2,4-5,11-12H,3H2,(H,13,14) DUUGKQCEGZLZNO-UHFFFAOYSA-N 191.18340 191.05824 OC(=O)Cc1c[nH]c2ccc(O)cc12 PMID:11063613|Wikipedia:5-Hydroxyindoleacetic_acid|KEGG:C05635|PMID:22770225|Reaxys:168797|Beilstein:168797|MetaCyc:5-HYDROXYINDOLE_ACETATE|HMDB:HMDB0000763|CAS:54-16-0|KNApSAcK:C00000104|PMID:11113939 CHEBI:20585|CHEBI:2071 chebi_ontology owl:Class CHEBI:133249 biolink:NamedThing saturated fatty aldehyde monarch-merged.owl owl:Class CHEBI:142621 biolink:NamedThing medium-chain fatty aldehyde monarch-merged.owl owl:Class CHEBI:17176 biolink:NamedThing long-chain fatty aldehyde monarch-merged.owl owl:Class CHEBI:49188 biolink:NamedThing 2-methyl-branched fatty aldehyde monarch-merged.owl owl:Class CHEBI:61870 biolink:NamedThing monounsaturated fatty aldehyde monarch-merged.owl owl:Class CHEBI:72692 biolink:NamedThing polyunsaturated fatty aldehyde monarch-merged.owl owl:Class CHEBI:84587 biolink:NamedThing 2,3-saturated fatty aldehyde monarch-merged.owl owl:Class CHEBI:84588 biolink:NamedThing trans-2,3-unsaturated fatty aldehyde monarch-merged.owl owl:Class CHEBI:13332 biolink:NamedThing GDP-beta-L-fucose monarch-merged.owl owl:Class CHEBI:17009 biolink:NamedThing GDP-L-fucose monarch-merged.owl owl:Class CHEBI:133331 biolink:NamedThing metal oxide monarch-merged.owl owl:Class CHEBI:24836 biolink:NamedThing inorganic oxide monarch-merged.owl inorganic oxides chebi_ontology owl:Class CHEBI:24837 biolink:NamedThing inorganic peroxide Compounds of structure ROOR' in which R and R' are inorganic groups. monarch-merged.owl inorganic peroxides|inorganic peroxide chebi_ontology owl:Class CHEBI:33327 biolink:NamedThing silicon oxide monarch-merged.owl oxides of silicon|silicon oxides owl:Class CHEBI:35196 biolink:NamedThing nitrogen oxide monarch-merged.owl nitrogen oxides|oxides of nitrogen chebi_ontology owl:Class CHEBI:37749 biolink:NamedThing halogen oxide monarch-merged.owl halogen oxides|halogen oxide chebi_ontology owl:Class CHEBI:46725 biolink:NamedThing oxide mineral monarch-merged.owl oxide minerals owl:Class CHEBI:48154 biolink:NamedThing sulfur oxide monarch-merged.owl oxides of sulfur|sulfur oxides|Schwefeloxide chebi_ontology owl:Class CHEBI:133358 biolink:NamedThing N(alpha)-acetyl-L-methionyl-L-asparaginyl residue monarch-merged.owl owl:Class CHEBI:133362 biolink:NamedThing N-acetyl-L-methionyl-L-glutaminyl residue monarch-merged.owl owl:Class CHEBI:133378 biolink:NamedThing N-acetyl-L-methionyl-L-leucyl residue monarch-merged.owl owl:Class CHEBI:133379 biolink:NamedThing N-acetyl-L-methionyl-L-isoleucyl residue monarch-merged.owl owl:Class CHEBI:133382 biolink:NamedThing N-acetyl-L-methionyl-L-phenylalanyl residue monarch-merged.owl owl:Class CHEBI:133384 biolink:NamedThing N-acetyl-L-methionyl-L-tyrosyl residue monarch-merged.owl owl:Class CHEBI:133386 biolink:NamedThing N-acetyl-L-methionyl-L-tryptophyl residue monarch-merged.owl owl:Class CHEBI:133399 biolink:NamedThing N-acetyl-L-methionyl-L-alanyl residue monarch-merged.owl owl:Class CHEBI:133400 biolink:NamedThing N-acetyl-L-methionyl-L-seryl residue monarch-merged.owl owl:Class CHEBI:133402 biolink:NamedThing N-acetyl-L-methionyl-L-valyl residue monarch-merged.owl owl:Class CHEBI:133404 biolink:NamedThing N-acetyl-L-methionyl-L-threonyl residue monarch-merged.owl owl:Class CHEBI:133369 biolink:NamedThing N-acetylglycyl residue monarch-merged.owl owl:Class CHEBI:133371 biolink:NamedThing N-acetyl-L-valyl residue monarch-merged.owl owl:Class CHEBI:133372 biolink:NamedThing N-acetyl-L-cysteinyl residue monarch-merged.owl owl:Class CHEBI:133375 biolink:NamedThing N-acetyl-L-threonyl residue monarch-merged.owl owl:Class CHEBI:27624 biolink:NamedThing prostaglandin B1 monarch-merged.owl owl:Class CHEBI:28099 biolink:NamedThing prostaglandin B2 monarch-merged.owl owl:Class CHEBI:133414 biolink:NamedThing N-acetyl-L-methionyl residue monarch-merged.owl owl:Class CHEBI:78598 biolink:NamedThing N-acetylamino-acid residue monarch-merged.owl owl:Class CHEBI:133419 biolink:NamedThing 2-isobutyrylphloroglucinol monarch-merged.owl owl:Class CHEBI:134326 biolink:NamedThing 2-(2-methylbutanoyl)phloroglucinol monarch-merged.owl owl:Class CHEBI:15951 biolink:NamedThing 3-methyl-1-(2,4,6-trihydroxyphenyl)butan-1-one monarch-merged.owl owl:Class CHEBI:133442 biolink:NamedThing (5R)-5-hydroxy-L-lysine(1+) residue monarch-merged.owl owl:Class CHEBI:58942 biolink:NamedThing amino-acid cation residue monarch-merged.owl owl:Class CHEBI:58943 biolink:NamedThing alpha-amino-acid cation residue monarch-merged.owl owl:Class CHEBI:78294 biolink:NamedThing (3R)-3-hydroxy-L-argininium residue monarch-merged.owl owl:Class CHEBI:78296 biolink:NamedThing (3S)-3-ammonio-3-(3-chloro-4,5-dihydroxyphenyl)propanoyl residue monarch-merged.owl owl:Class CHEBI:78297 biolink:NamedThing (3S)-3-ammonio-3-(3-chloro-4-hydroxyphenyl)propanoyl residue monarch-merged.owl owl:Class CHEBI:133443 biolink:NamedThing (5R)-5-(beta-D-galactosyloxy)-L-lysine(1+) residue monarch-merged.owl owl:Class CHEBI:133452 biolink:NamedThing (5R)-5-[(alpha-D-glucosyl-(1->2)-beta-D-galactosyl)oxy]-L-lysine(1+) residue monarch-merged.owl owl:Class CHEBI:57280 biolink:NamedThing N(6)-lipoyl-L-lysinium(1+) residue monarch-merged.owl owl:Class CHEBI:57281 biolink:NamedThing N(6)-(S(8)-ammoniomethyldihydrolipoyl)-L-lysinium(2+) residue monarch-merged.owl owl:Class CHEBI:57616 biolink:NamedThing L-methioninium residue monarch-merged.owl owl:Class CHEBI:57750 biolink:NamedThing N(tele)-methyl-L-histidinium residue monarch-merged.owl owl:Class CHEBI:57862 biolink:NamedThing diphthamide(2+) residue monarch-merged.owl owl:Class CHEBI:58699 biolink:NamedThing L-methioninium (S)-S-oxide residue monarch-merged.owl owl:Class CHEBI:58706 biolink:NamedThing L-methioninium (R)-S-oxide residue monarch-merged.owl owl:Class CHEBI:58839 biolink:NamedThing N(6)-dihydrolipoyl-L-lysinium(1+) residue monarch-merged.owl owl:Class CHEBI:78597 biolink:NamedThing N-terminal alpha-amino-acid(1+) residue monarch-merged.owl owl:Class CHEBI:83561 biolink:NamedThing N-terminal L-phenylalanyl-L-alpha-amino acid(1+) residue monarch-merged.owl owl:Class CHEBI:83562 biolink:NamedThing N-terminal L-arginyl-L-alpha-amino acid(2+) residue monarch-merged.owl owl:Class CHEBI:133444 biolink:NamedThing 1-O-acylceramide monarch-merged.owl owl:Class CHEBI:17761 biolink:NamedThing ceramide Ceramides (N-acyl-sphingoid bases) are a major subclass of sphingoid base derivatives with an amide-linked fatty acid. The fatty acids are typically saturated or monounsaturated with chain lengths from 14 to 26 carbon atoms; the presence of a hydroxyl group on carbon 2 is fairly common. Ceramides are generally precursors of more complex sphingolipids. In the illustrated generalised structure, R(1) = OH, OX (where X = acyl, glycosyl, phosphate, phosphonate, etc.), or H. monarch-merged.owl ceramides|N-acylated sphingoid|a ceramide|Cer|Ceramide 0 C4H6NO2R3 100.09590 100.03985 O[C@H]([*])[C@H](C[*])NC([*])=O PMID:7542630|Wikipedia:Ceramide|KEGG:C00195|LIPID_MAPS_class:LMSP02 CHEBI:23074|CHEBI:12487|CHEBI:7242|CHEBI:13954 chebi_ontology owl:Class CHEBI:13956 biolink:NamedThing ceramide 1-phosphate monarch-merged.owl owl:Class CHEBI:176642 biolink:NamedThing oxidized ceramide monarch-merged.owl owl:Class CHEBI:23079 biolink:NamedThing cerebroside Any member of a group of glycosphingolipids, also known as monoglycosylceramides, which are important components in animal muscle and nerve cell membranes. monarch-merged.owl cerebrosides|monoglycosylceramides|monoglycosylceramide chebi_ontology owl:Class CHEBI:28892 biolink:NamedThing ganglioside A molecule composed of a glycosphingolipid (ceramide and oligosaccharide) with one or more sialic acids linked on the sugar chain. monarch-merged.owl Ganglioside|gangliosides|sialoglycosphingolipids PMID:16158191|PMID:2088646|LIPID_MAPS_class:LMSP0601|Wikipedia:Ganglioside|KEGG:C01808 CHEBI:36525|CHEBI:5274|CHEBI:26669 chebi_ontology owl:Class CHEBI:36520 biolink:NamedThing oligoglycosylceramide monarch-merged.owl CHEBI:24253|CHEBI:25672 chebi_ontology owl:Class CHEBI:62941 biolink:NamedThing glycosylceramide A ceramide compound formed by the replacement of the glycosidic hydroxy group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. monarch-merged.owl glycosylceramides chebi_ontology owl:Class CHEBI:70846 biolink:NamedThing N-acyl-15-methylhexadecasphing-4-enine monarch-merged.owl owl:Class CHEBI:74185 biolink:NamedThing N-tetracosenoyl-C17-sphingosine monarch-merged.owl owl:Class CHEBI:76222 biolink:NamedThing 1-O-acyl-N-acylsphingosine monarch-merged.owl owl:Class CHEBI:77836 biolink:NamedThing N-[omega-(acylyloxy)]acylsphin-4-enine monarch-merged.owl owl:Class CHEBI:83273 biolink:NamedThing N-acylsphingoid A ceramide consisting of an undefined sphingoid base linked to an undefined fatty acid via an amide bond. monarch-merged.owl N-acyl-D-erythro-sphingoid base|N-acyl-sphingoid base|N-acylsphingoids 0 C4H7NO3R2 117.103 117.04259 OC[C@H](NC([*])=O)[C@H](O)[*] chebi_ontology owl:Class CHEBI:84403 biolink:NamedThing phytoceramides monarch-merged.owl owl:Class CHEBI:84445 biolink:NamedThing N-acylheptadecasphingosine monarch-merged.owl owl:Class CHEBI:85953 biolink:NamedThing N-acyl-(4E,8E)-sphinga-4,8-dienine monarch-merged.owl owl:Class CHEBI:86294 biolink:NamedThing N-acyl-(4E,8E,10E)-sphinga-4,8,10-trienine monarch-merged.owl owl:Class CHEBI:87033 biolink:NamedThing N-acyl-(4E,8E)-9-methylsphinga-4,8-dienine monarch-merged.owl owl:Class CHEBI:133445 biolink:NamedThing saturated fatty acyl-L-carnitine monarch-merged.owl owl:Class CHEBI:176910 biolink:NamedThing fatty acyl-L-carnitine monarch-merged.owl owl:Class CHEBI:133446 biolink:NamedThing monounsaturated fatty acyl-L-carnitine monarch-merged.owl owl:Class CHEBI:133447 biolink:NamedThing methyl-branched fatty acyl-L-carnitine monarch-merged.owl owl:Class CHEBI:133448 biolink:NamedThing oxo-fatty acyl-L-carnitine monarch-merged.owl owl:Class CHEBI:133449 biolink:NamedThing hydroxy-fatty acyl-L-carnitine monarch-merged.owl owl:Class CHEBI:77087 biolink:NamedThing O-hexadecanedioyl-L-carnitine(1-) monarch-merged.owl owl:Class CHEBI:75659 biolink:NamedThing O-acyl-L-carnitine monarch-merged.owl owl:Class CHEBI:133450 biolink:NamedThing (2E)-enoyl-L-carnitine monarch-merged.owl owl:Class CHEBI:77237 biolink:NamedThing O-hexadecanedioyl-L-carnitine monarch-merged.owl owl:Class CHEBI:84841 biolink:NamedThing (R)-acetoacetylcarnitine monarch-merged.owl owl:Class CHEBI:85480 biolink:NamedThing O-butenoyl-L-carnitine monarch-merged.owl owl:Class CHEBI:133455 biolink:NamedThing (2E)-dec-2-enal monarch-merged.owl owl:Class CHEBI:61727 biolink:NamedThing dec-2-enal monarch-merged.owl owl:Class CHEBI:133470 biolink:NamedThing beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminide monarch-merged.owl owl:Class CHEBI:24400 biolink:NamedThing glycoside A glycosyl compound resulting from the attachment of a glycosyl group to a non-acyl group RO-, RS-, RSe-, etc. The bond between the glycosyl group and the non-acyl group is called a glycosidic bond. By extension, the terms N-glycosides and C-glycosides are used as class names for glycosylamines and for compounds having a glycosyl group attached to a hydrocarbyl group respectively. These terms are misnomers and should not be used. The preferred terms are glycosylamines and C-glycosyl compounds, respectively. monarch-merged.owl O-glycoside|glycosides|O-glycosides chebi_ontology owl:Class CHEBI:133506 biolink:NamedThing beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:133507 biolink:NamedThing beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:133509 biolink:NamedThing alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:133510 biolink:NamedThing alpha-L-fucosyl-(1->2)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:134090 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:136588 biolink:NamedThing beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide monarch-merged.owl owl:Class CHEBI:136857 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:137553 biolink:NamedThing 2-O-[6-O-octanoyl-alpha-D-glucosyl-(1->6)-alpha-D-glucosyl]-D-glyceric acid monarch-merged.owl owl:Class CHEBI:137558 biolink:NamedThing 2-O-[alpha-D-glucosyl-(1->6)-alpha-D-glucosyl]-D-glyceric acid monarch-merged.owl owl:Class CHEBI:137941 biolink:NamedThing beta-D-galactosyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:138024 biolink:NamedThing alpha-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:138025 biolink:NamedThing N-acetyl-beta-D-glucosaminyl-(1->6)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:138027 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:138371 biolink:NamedThing beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:138372 biolink:NamedThing beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:139604 biolink:NamedThing beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminide monarch-merged.owl owl:Class CHEBI:140303 biolink:NamedThing beta-D-galactosyl-(1->4)-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:140304 biolink:NamedThing beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-N-acetyl-beta-D-glucosaminide monarch-merged.owl owl:Class CHEBI:145470 biolink:NamedThing sophoroside monarch-merged.owl owl:Class CHEBI:16358 biolink:NamedThing (R)-vicianin monarch-merged.owl owl:Class CHEBI:19946 biolink:NamedThing xylosylglycoside monarch-merged.owl owl:Class CHEBI:2220 biolink:NamedThing 6-O-(beta-D-xylopyranosyl)-beta-D-glucopyranoside monarch-merged.owl owl:Class CHEBI:23436 biolink:NamedThing cyanogenic glycoside monarch-merged.owl owl:Class CHEBI:24215 biolink:NamedThing gentiobioside monarch-merged.owl owl:Class CHEBI:24406 biolink:NamedThing glycosylglycerol monarch-merged.owl owl:Class CHEBI:24587 biolink:NamedThing hexosaminide monarch-merged.owl owl:Class CHEBI:25302 biolink:NamedThing methyl glycoside monarch-merged.owl owl:Class CHEBI:26548 biolink:NamedThing rhamnosylglucoside monarch-merged.owl owl:Class CHEBI:26605 biolink:NamedThing saponin A glycoside that is a compound containing one or more hydrophilic glycoside moieties combined with a lipophilic triterpenoid or steroid derivative. Found in particular abundance in plant species. monarch-merged.owl saponins|sapogenin glycosides|sapogenin glycoside owl:Class CHEBI:35218 biolink:NamedThing anthocyanin cation monarch-merged.owl owl:Class CHEBI:35312 biolink:NamedThing pentoside monarch-merged.owl owl:Class CHEBI:35313 biolink:NamedThing hexoside monarch-merged.owl hexosides|hexoside chebi_ontology owl:Class CHEBI:35314 biolink:NamedThing glycosiduronic acid monarch-merged.owl owl:Class CHEBI:35315 biolink:NamedThing deoxy hexoside monarch-merged.owl deoxy hexosides|deoxy hexoside chebi_ontology owl:Class CHEBI:61777 biolink:NamedThing terpene glycoside monarch-merged.owl owl:Class CHEBI:62603 biolink:NamedThing 2-O-[alpha-D-mannopyranosyl-(1->2)-alpha-D-glucopyranosyl]-3-O-phospho-D-glyceric acid monarch-merged.owl owl:Class CHEBI:67989 biolink:NamedThing ginsenoside Rb1 monarch-merged.owl owl:Class CHEBI:67991 biolink:NamedThing (20S)-ginsenoside Rg3 monarch-merged.owl owl:Class CHEBI:71583 biolink:NamedThing anthocyanidin glycoside monarch-merged.owl owl:Class CHEBI:72730 biolink:NamedThing flavanone glycoside monarch-merged.owl owl:Class CHEBI:74630 biolink:NamedThing glycosyloxyisoflavone monarch-merged.owl owl:Class CHEBI:75504 biolink:NamedThing pyranoside monarch-merged.owl owl:Class CHEBI:79202 biolink:NamedThing ascaroside monarch-merged.owl owl:Class CHEBI:83970 biolink:NamedThing cardiac glycoside Steroid lactones containing sugar residues that act on the contractile force of the cardiac muscles. monarch-merged.owl cardiac glycosides Wikipedia:Cardiac_glycoside chebi_ontology owl:Class CHEBI:88152 biolink:NamedThing 2-O-[alpha-D-mannosyl-(1->2)-alpha-D-glucosyl]-D-glyceric acid monarch-merged.owl owl:Class CHEBI:63353 biolink:NamedThing disaccharide derivative A carbohydrate derivative that is formally obtained from a disaccharide. monarch-merged.owl disaccharide derivatives chebi_ontology owl:Class CHEBI:13714 biolink:NamedThing 1-O-acetylmaltose monarch-merged.owl owl:Class CHEBI:137856 biolink:NamedThing 5alpha-dihydrotestosterone 17-O-[beta-D-glucuronosyl-(1->2)-glucuronide] monarch-merged.owl owl:Class CHEBI:140327 biolink:NamedThing alpha-L-fucosyl-(1->2)-beta-D-galactoside monarch-merged.owl owl:Class CHEBI:16596 biolink:NamedThing cyanidin 3-O-rutinoside 5-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:16631 biolink:NamedThing vitexin 2''-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:17379 biolink:NamedThing isovitexin 2''-O-beta-D-glucoside monarch-merged.owl owl:Class CHEBI:17512 biolink:NamedThing methyl 2-O-alpha-L-fucopyranosyl-beta-D-galactoside monarch-merged.owl owl:Class CHEBI:25441 biolink:NamedThing mycothiols monarch-merged.owl owl:Class CHEBI:27613 biolink:NamedThing amygdalin monarch-merged.owl owl:Class CHEBI:28775 biolink:NamedThing hesperidin monarch-merged.owl owl:Class CHEBI:29556 biolink:NamedThing chloroeremomycin monarch-merged.owl owl:Class CHEBI:31968 biolink:NamedThing pelargonidin 3-O-rutinoside monarch-merged.owl owl:Class CHEBI:569624 biolink:NamedThing papulacandin B monarch-merged.owl owl:Class CHEBI:63360 biolink:NamedThing glycosylgalactose derivative monarch-merged.owl owl:Class CHEBI:63361 biolink:NamedThing glycosylglucose derivative monarch-merged.owl owl:Class CHEBI:71587 biolink:NamedThing cyanidin 3-O-[beta-D-xylosyl-(1->2)-beta-D-galactoside] monarch-merged.owl owl:Class CHEBI:79068 biolink:NamedThing crocin-1 monarch-merged.owl owl:Class CHEBI:79985 biolink:NamedThing flavanone 7-O-[alpha-L-rhamnosyl-(1->2)-beta-D-glucoside] monarch-merged.owl owl:Class CHEBI:82682 biolink:NamedThing vitexin 2''-O-beta-L-rhamnoside monarch-merged.owl owl:Class CHEBI:85901 biolink:NamedThing epivancomycin monarch-merged.owl owl:Class CHEBI:87260 biolink:NamedThing O-[N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-serine monarch-merged.owl owl:Class CHEBI:90337 biolink:NamedThing 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-1,2-didodecanoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:90359 biolink:NamedThing 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-monododecanoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:90457 biolink:NamedThing 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-1,2-dioctoanoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:90463 biolink:NamedThing 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-1,2-bis(long-chain acyl)-sn-glycerol monarch-merged.owl owl:Class CHEBI:90469 biolink:NamedThing 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-2-mono(long-chain acyl)-sn-glycerol monarch-merged.owl owl:Class CHEBI:90493 biolink:NamedThing 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-2-octoanoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:90768 biolink:NamedThing 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-monooctanoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:90774 biolink:NamedThing 3-[alpha-D-galactosyl-(1->6)-beta-D-galactosyl]-mono(long-chain acyl)-sn-glycerol monarch-merged.owl owl:Class CHEBI:133490 biolink:NamedThing saturated fatty acyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:136562 biolink:NamedThing long-chain fatty acyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:83623 biolink:NamedThing dodecanoyl-AMP(1-) monarch-merged.owl owl:Class CHEBI:133497 biolink:NamedThing 3-(2-methylthioethyl)malate(2-) monarch-merged.owl owl:Class CHEBI:133501 biolink:NamedThing 3-(3-methylthio)propylmalate(2-) monarch-merged.owl owl:Class CHEBI:133499 biolink:NamedThing 2-(2-methylthio)ethylmaleate(2-) monarch-merged.owl owl:Class CHEBI:133500 biolink:NamedThing 2-(2-methylthio)propylmaleate(2-) monarch-merged.owl owl:Class CHEBI:63571 biolink:NamedThing trisaccharide derivative An oligosaccharide derivative that is formally obtained from a trisaccharide. monarch-merged.owl trisaccharide derivatives chebi_ontology owl:Class CHEBI:140328 biolink:NamedThing alpha-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->2)]-beta-D-galactoside monarch-merged.owl owl:Class CHEBI:27898 biolink:NamedThing cyanidin 3-O-(6-O-glucosyl-2-O-xylosylgalactoside) monarch-merged.owl owl:Class CHEBI:71499 biolink:NamedThing cyanidin 3-O-{6-O-[6-O-(4-coumaroyl)-beta-D-glucosyl]-2-O-beta-D-xylosyl-beta-D-galactoside} monarch-merged.owl owl:Class CHEBI:74023 biolink:NamedThing dioscin monarch-merged.owl owl:Class CHEBI:75932 biolink:NamedThing 26-desglucoavenacoside A monarch-merged.owl owl:Class CHEBI:133511 biolink:NamedThing 3-hydroxyoctanoate monarch-merged.owl owl:Class CHEBI:138608 biolink:NamedThing (S)-3-hydroxypentanoate monarch-merged.owl owl:Class CHEBI:85634 biolink:NamedThing (3R)-3-hydroxy fatty acid anion monarch-merged.owl owl:Class CHEBI:137701 biolink:NamedThing 17-epiestriol 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137702 biolink:NamedThing 17-epiestriol 17-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137706 biolink:NamedThing 17-epiestriol 16-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137720 biolink:NamedThing 16-epiestriol 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137723 biolink:NamedThing 16-epiestriol 16-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137790 biolink:NamedThing chenodeoxycholic acid 24-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137791 biolink:NamedThing cholic acid 24-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137799 biolink:NamedThing deoxycholic acid 24-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137807 biolink:NamedThing lithocholic acid 24-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137812 biolink:NamedThing hyodeoxycholic acid 24-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:137817 biolink:NamedThing hyocholic acid 24-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:139600 biolink:NamedThing calcitriol 25-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:139610 biolink:NamedThing calcidiol 25-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:139613 biolink:NamedThing calcidiol 3-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:15822 biolink:NamedThing 17alpha-estradiol 3-glucosiduronic acid monarch-merged.owl owl:Class CHEBI:73201 biolink:NamedThing 17alpha-(N-acetyl-alpha-D-glucosaminyl)estradiol 3-glucuronoside monarch-merged.owl owl:Class CHEBI:89417 biolink:NamedThing 5alpha-dihydrotestosterone 17-O-(beta-D-glucuronide) monarch-merged.owl owl:Class CHEBI:133518 biolink:NamedThing (E)-3-methylglutaconate anion monarch-merged.owl owl:Class CHEBI:133525 biolink:NamedThing N-acylphytosphingosine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:84404 biolink:NamedThing ceramide 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57674 biolink:NamedThing N-acylsphingosine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:71156 biolink:NamedThing N-acyl-15-methylhexadecasphing-4-enine-1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:133574 biolink:NamedThing 5-hydroxylysinium monarch-merged.owl owl:Class CHEBI:33719 biolink:NamedThing alpha-amino-acid cation monarch-merged.owl alpha-amino acid cations|alpha-amino-acid cations|alpha-amino-acid cation chebi_ontology owl:Class CHEBI:133775 biolink:NamedThing dimethylargininium(1+) monarch-merged.owl owl:Class CHEBI:134344 biolink:NamedThing ergothioneine(1+) monarch-merged.owl owl:Class CHEBI:137487 biolink:NamedThing (2R,5S)-2,5-diammoniohexanoate monarch-merged.owl owl:Class CHEBI:141496 biolink:NamedThing 4-hydroxy-L-lysine(1+) monarch-merged.owl owl:Class CHEBI:17311 biolink:NamedThing N(6),N(6),N(6)-trimethyl-L-lysine monarch-merged.owl owl:Class CHEBI:32440 biolink:NamedThing alaninium An alpha-amino-acid cation that is the conjugate acid of alanine. monarch-merged.owl 1-carboxyethanaminium|alaninium|alanine cation +1 C3H8NO2 InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/p+1 QNAYBMKLOCPYGJ-UHFFFAOYSA-O 90.10116 90.05495 CC([NH3+])C(O)=O Gmelin:362663 chebi_ontology owl:Class CHEBI:32458 biolink:NamedThing cysteinium monarch-merged.owl cysteinium|1-carboxy-2-sulfanylethanaminium|1-carboxy-2-mercaptoethanaminium|cysteine cation|H2cys(+) +1 C3H8NO2S InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p+1 XUJNEKJLAYXESH-UHFFFAOYSA-O 122.16716 122.02703 [NH3+]C(CS)C(O)=O Gmelin:325859 chebi_ontology owl:Class CHEBI:32505 biolink:NamedThing phenylalaninium An alpha-amino-acid cation that is the conjugate acid of phenylalanine, arising from protonation of the amino group. monarch-merged.owl phenylalaninium|1-carboxy-2-phenylethanaminium|phenylalanine cation +1 C9H12NO2 InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)/p+1 COLNVLDHVKWLRT-UHFFFAOYSA-O 166.19710 166.08626 [NH3+]C(Cc1ccccc1)C(O)=O chebi_ontology owl:Class CHEBI:32507 biolink:NamedThing glycinium An alpha-amino-acid cation that is the conjugate acid of glycine, arising from protonation of the amino. monarch-merged.owl H2gly(+)|carboxymethanaminium|glycinium|NH3(+)-CH2-COOH|glycine cation +1 C2H6NO2 InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)/p+1 DHMQDGOQFOQNFH-UHFFFAOYSA-O 76.07458 76.03930 [NH3+]CC(O)=O Gmelin:323509 chebi_ontology owl:Class CHEBI:32531 biolink:NamedThing histidinium(1+) monarch-merged.owl 2-ammonio-3-(1H-imidazol-3-ium-4-yl)propanoate|histidinium|histidine monocation|histidinium(1+) +1 C6H10N3O2 InChI=1S/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11)/p+1 HNDVDQJCIGZPNO-UHFFFAOYSA-O 156.16262 156.07675 [NH3+]C(Cc1c[nH]c[nH+]1)C([O-])=O chebi_ontology owl:Class CHEBI:32532 biolink:NamedThing histidinium(2+) monarch-merged.owl histidine dication|histidinium(2+)|histidinediium|4-(2-ammonio-2-carboxyethyl)-1H-imidazol-3-ium +2 C6H11N3O2 InChI=1S/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11)/p+2 HNDVDQJCIGZPNO-UHFFFAOYSA-P 157.17056 157.08403 [NH3+]C(Cc1c[nH]c[nH+]1)C(O)=O Gmelin:1151904 chebi_ontology owl:Class CHEBI:32564 biolink:NamedThing lysinium(1+) An alpha-amino-acid cation that is the conjugate acid of lysine, having two cationic amino groups and an anionic carboxy group. monarch-merged.owl 2,6-diammoniohexanoate|lysinium|lysinium(1+)|lysine monocation +1 C6H15N2O2 InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+1 KDXKERNSBIXSRK-UHFFFAOYSA-O 147.19558 147.11280 [NH3+]CCCCC([NH3+])C([O-])=O chebi_ontology owl:Class CHEBI:32565 biolink:NamedThing lysinium(2+) An alpha-amino-acid cation obtained by protonation of both amino groups of lysine. monarch-merged.owl lysine dication|lysinediium|lysinium(2+)|1-carboxypentane-1,5-diaminium +2 C6H16N2O2 InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+2 KDXKERNSBIXSRK-UHFFFAOYSA-P 148.20352 148.12008 [NH3+]CCCCC([NH3+])C(O)=O chebi_ontology owl:Class CHEBI:32613 biolink:NamedThing isoleucinium monarch-merged.owl isoleucine cation|H2ile(+)|rel-(1R,2R)-1-carboxy-2-methylbutan-1-aminium|isoleucinium Gmelin:1651827 chebi_ontology owl:Class CHEBI:32628 biolink:NamedThing leucinium An alpha-amino-acid cation that is the conjugate acid of leucine, arising from protonation of the amino group. monarch-merged.owl H2leu(+)|leucine cation|1-carboxy-3-methylbutan-1-aminium|leucinium +1 C6H14NO2 InChI=1S/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/p+1 ROHFNLRQFUQHCH-UHFFFAOYSA-O 132.18090 132.10191 CC(C)CC([NH3+])C(O)=O Gmelin:1651836 chebi_ontology owl:Class CHEBI:32646 biolink:NamedThing methioninium A sulfur-containing amino-acid anion that is the conjugate acid of methionine, arising from protonation of the amino group. monarch-merged.owl 1-carboxy-3-(methylsulfanyl)propan-1-aminium|methioninium|methionine cation|H2met(+) +1 C5H12NO2S InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/p+1 FFEARJCKVFRZRR-UHFFFAOYSA-O 150.22032 150.05833 CSCCC([NH3+])C(O)=O Gmelin:326567 chebi_ontology owl:Class CHEBI:32661 biolink:NamedThing asparaginium monarch-merged.owl 3-amino-1-carboxy-3-oxopropan-1-aminium|H2asp(+)|asparagine cation|asparaginium +1 C4H9N2O3 InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/p+1 DCXYFEDJOCDNAF-UHFFFAOYSA-O 133.12594 133.06077 NC(=O)CC([NH3+])C(O)=O chebi_ontology owl:Class CHEBI:32679 biolink:NamedThing glutaminium An alpha-amino-acid cation that is the conjugate acid of glutamine, arising from protonation of the amino group. monarch-merged.owl 4-amino-1-carboxy-4-oxobutan-1-aminium|glutamine cation|H2gln(+)|glutaminium +1 C5H11N2O3 InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/p+1 ZDXPYRJPNDTMRX-UHFFFAOYSA-O 147.15252 147.07642 NC(=O)CCC([NH3+])C(O)=O chebi_ontology owl:Class CHEBI:32696 biolink:NamedThing argininium(1+) monarch-merged.owl H2arg(+)|arginine|2-ammonio-5-guanidiniopentanoate|argininium(1+)|argininium|arginine monocation +1 C6H15N4O2 InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1 ODKSFYDXXFIFQN-UHFFFAOYSA-O 175.20906 175.11895 NC(=[NH2+])NCCCC([NH3+])C([O-])=O Gmelin:1345599 chebi_ontology owl:Class CHEBI:32697 biolink:NamedThing argininium(2+) monarch-merged.owl argininediium|H3arg(2+)|argininium(2+)|(1-carboxy-4-guanidiniobutyl)ammonium|arginine dication +2 C6H16N4O2 InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+2 ODKSFYDXXFIFQN-UHFFFAOYSA-P 176.21700 176.12623 NC(=[NH2+])NCCCC([NH3+])C(O)=O chebi_ontology owl:Class CHEBI:32728 biolink:NamedThing tryptophanium An alpha-amino-acid cation that is the conjugate acid of tryptophan, arising from protonation of the alpha-amino group. monarch-merged.owl Htrp(+)|tryptophan cation|1-carboxy-2-(1H-indol-3-yl)ethanaminium|tryptophanium +1 C11H13N2O2 InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/p+1 QIVBCDIJIAJPQS-UHFFFAOYSA-O 205.23320 205.09715 [NH3+]C(Cc1c[nH]c2ccccc12)C(O)=O chebi_ontology owl:Class CHEBI:32754 biolink:NamedThing selenocysteinium monarch-merged.owl owl:Class CHEBI:32786 biolink:NamedThing tyrosinium An alpha-amino-acid cation that is the conjugate acid of tyrosine, arising from protonation of the amino group. monarch-merged.owl tyrosine cation|1-carboxy-2-(4-hydroxyphenyl)ethanaminium|tyrosinium +1 C9H12NO3 InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/p+1 OUYCCCASQSFEME-UHFFFAOYSA-O 182.19652 182.08117 [NH3+]C(Cc1ccc(O)cc1)C(O)=O chebi_ontology owl:Class CHEBI:32833 biolink:NamedThing threoninium monarch-merged.owl rel-(1R,2S)-1-carboxy-2-hydroxypropan-1-aminium|threonine cation|threoninium 0 C4H10NO3 120.127 120.06607 chebi_ontology owl:Class CHEBI:32846 biolink:NamedThing serinium An alpha-amino-acid cation that is the conjugate acid of serine. monarch-merged.owl 1-carboxy-2-hydroxyethanaminium|serine cation|serinium +1 C3H8NO3 InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/p+1 MTCFGRXMJLQNBG-UHFFFAOYSA-O 106.10056 106.04987 [NH3+]C(CO)C(O)=O Gmelin:1925675 chebi_ontology owl:Class CHEBI:32860 biolink:NamedThing valinium monarch-merged.owl 1-carboxy-2-methylpropan-1-aminium|H2val(+)|valine cation|valinium +1 C5H12NO2 InChI=1S/C5H11NO2/c1-3(2)4(6)5(7)8/h3-4H,6H2,1-2H3,(H,7,8)/p+1 KZSNJWFQEVHDMF-UHFFFAOYSA-O 118.15432 118.08626 CC(C)C([NH3+])C(O)=O Gmelin:1651060 chebi_ontology owl:Class CHEBI:32872 biolink:NamedThing prolinium An alpha-amino-acid cation that is the conjugate acid of proline, arising from protonation of the amino group. monarch-merged.owl H2pro(+)|2-carboxypyrrolidinium|proline cation|prolinium +1 C5H10NO2 InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/p+1 ONIBWKKTOPOVIA-UHFFFAOYSA-O 116.13840 116.07060 OC(=O)C1CCC[NH2+]1 chebi_ontology owl:Class CHEBI:42164 biolink:NamedThing 3-ammonio-L-alanine monarch-merged.owl owl:Class CHEBI:46842 biolink:NamedThing sarcosinium An alpha-amino-acid cation that is the conjugate acid of sarcosine, arising from protonation of the amino group. monarch-merged.owl carboxy-N-methylmethanaminium +1 C3H8NO2 InChI=1S/C3H7NO2/c1-4-2-3(5)6/h4H,2H2,1H3,(H,5,6)/p+1 FSYKKLYZXJSNPZ-UHFFFAOYSA-O 90.10116 90.05495 [H][N+]([H])(C)CC(O)=O Gmelin:323778 chebi_ontology owl:Class CHEBI:46912 biolink:NamedThing ornithinium(1+) monarch-merged.owl ornithinium(1+)|ornithinium|2,5-diammoniopentanoate|ornithine monocation +1 C5H13N2O2 InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/p+1 AHLPHDHHMVZTML-UHFFFAOYSA-O 133.16900 133.09715 [NH3+]CCCC([NH3+])C([O-])=O chebi_ontology owl:Class CHEBI:46913 biolink:NamedThing ornithinium(2+) monarch-merged.owl ornithinium(2+)|1-carboxybutane-1,4-diaminium|ornithine dication|ornithinediium +2 C5H14N2O2 InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/p+2 AHLPHDHHMVZTML-UHFFFAOYSA-P 134.17694 134.10443 [NH3+]CCCC([NH3+])C(O)=O chebi_ontology owl:Class CHEBI:53132 biolink:NamedThing Se-methylselenocysteinium monarch-merged.owl owl:Class CHEBI:57515 biolink:NamedThing 3-hydroxy-N(6),N(6),N(6)-trimethyl-L-lysine zwitterion monarch-merged.owl owl:Class CHEBI:58100 biolink:NamedThing N(6),N(6),N(6)-trimethyl-L-lysine zwitterion monarch-merged.owl owl:Class CHEBI:58202 biolink:NamedThing N(6)-methyl-L-lysinium(1+) monarch-merged.owl owl:Class CHEBI:58344 biolink:NamedThing 3-(3,4-dioxidopyridinium-1-yl)-L-alanine(1-) monarch-merged.owl owl:Class CHEBI:58357 biolink:NamedThing erythro-5-hydroxy-L-lysinium(1+) monarch-merged.owl owl:Class CHEBI:58697 biolink:NamedThing (2R,4S)-2,4-diazaniumylpentanoate monarch-merged.owl owl:Class CHEBI:58761 biolink:NamedThing L-2,4-diazaniumylbutyrate monarch-merged.owl owl:Class CHEBI:60107 biolink:NamedThing N(5)-[(hydroxyamino)(imino)methyl]-L-ornithinium(1+) monarch-merged.owl owl:Class CHEBI:65070 biolink:NamedThing carboxynorspermidine(2+) monarch-merged.owl owl:Class CHEBI:65072 biolink:NamedThing carboxyspermidine(2+) monarch-merged.owl owl:Class CHEBI:65258 biolink:NamedThing L-pyrrolysinium monarch-merged.owl owl:Class CHEBI:73936 biolink:NamedThing L-enduracididine(1+) monarch-merged.owl owl:Class CHEBI:73937 biolink:NamedThing (3S)-3-hydroxy-L-enduracididine(1+) monarch-merged.owl owl:Class CHEBI:73938 biolink:NamedThing (3S)-3-hydroxy-L-arginine(1+) monarch-merged.owl owl:Class CHEBI:75665 biolink:NamedThing (2S,3R)-capreomycidine(1+) monarch-merged.owl owl:Class CHEBI:77409 biolink:NamedThing (3S)-3-hydroxy-L-lysine(1+) monarch-merged.owl owl:Class CHEBI:77410 biolink:NamedThing (4R)-4-hydroxy-L-lysine(1+) monarch-merged.owl owl:Class CHEBI:77411 biolink:NamedThing (3S)-3-hydroxy-L-ornithine(1+) monarch-merged.owl owl:Class CHEBI:78902 biolink:NamedThing L-canavanine(1+) monarch-merged.owl owl:Class CHEBI:84374 biolink:NamedThing 3-ammonio-L-alanine(1+) monarch-merged.owl owl:Class CHEBI:88055 biolink:NamedThing (4-{4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine(1+) monarch-merged.owl owl:Class CHEBI:83972 biolink:NamedThing 3-methyl fatty acid anion A methyl-branched fatty acid anion obtained by deprotonation of the carboxy group of any 3-methyl fatty acid; major species at pH 7.3. monarch-merged.owl 3-methyl-branched fatty acid(1-)|3-methyl-branched fatty acid anion|3-methyl fatty acid -1 C4H6O2R 86.089 86.03678 CC([*])CC([O-])=O chebi_ontology owl:Class CHEBI:83976 biolink:NamedThing 2-methyl fatty acid anion monarch-merged.owl owl:Class CHEBI:133603 biolink:NamedThing methanesulfinate monarch-merged.owl owl:Class CHEBI:140741 biolink:NamedThing hypotaurine(1-) monarch-merged.owl owl:Class CHEBI:18218 biolink:NamedThing 2'-hydroxybiphenyl-2-sulfinate monarch-merged.owl owl:Class CHEBI:22319 biolink:NamedThing alkanesulfinate monarch-merged.owl owl:Class CHEBI:133606 biolink:NamedThing 1-octadecanoyl-2-arachidonoyl-sn-glycero-3-phospho-D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:65055 biolink:NamedThing 1-octadecanoyl-2-acyl-sn-glycero-3-phospho-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:74245 biolink:NamedThing 1-octadecanoyl-2-(5Z,8Z,11Z,14Z,17Z-eicosapentaenoyl)-sn-glycero-3-phospho-D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:77158 biolink:NamedThing 1-stearoyl-2-linoleoyl-sn-glycero-3-phospho-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:77163 biolink:NamedThing 1-stearoyl-2-oleoyl-sn-glycero-3-phospho-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:74240 biolink:NamedThing phosphatidylinositol 38:4(1-) monarch-merged.owl owl:Class CHEBI:75243 biolink:NamedThing 1-acyl-2-arachidonoyl-sn-glycero-3-phospho-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:72834 biolink:NamedThing 1-hexadecanoyl-2-(5Z,8Z,11Z,14Z-icosatetraenoyl)-sn-glycero-3-phospho-D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:78765 biolink:NamedThing 1-oleoyl-2-arachidonoyl-sn-glycero-3-phospho-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:133631 biolink:NamedThing 1-palmitoyl-2-icosatrienoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:64523 biolink:NamedThing phosphatidylcholine 36:3 monarch-merged.owl owl:Class CHEBI:74670 biolink:NamedThing 1-oleoyl-2-linoleoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:77369 biolink:NamedThing 1-palmitoyl-2-acyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:137411 biolink:NamedThing 1-hexadecanoyl-2-[(11Z,14Z,17Z)-icosatrienoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:138199 biolink:NamedThing 1-hexadecanoyl-2-heptanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:133677 biolink:NamedThing hexadecanoylcholine An acylcholine obtained by formal condensation of the carboxy group of hexadecanoic acid with the hydroxy group of choline. monarch-merged.owl 2-(hexadecanoyloxy)-N,N,N-trimethylethan-1-aminium|choline palmitate|palmitoylcholine|O-hexadecanoylcholine|O-palmitoylcholine|choline hexadecanoate +1 C21H44NO2 InChI=1S/C21H44NO2/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-21(23)24-20-19-22(2,3)4/h5-20H2,1-4H3/q+1 ODYPFMHOOQOHEF-UHFFFAOYSA-N 342.580 342.33666 C(CCCCCCCCCCCCC(OCC[N+](C)(C)C)=O)CC Reaxys:1801641|CAS:13100-90-8 chebi_ontology owl:Class CHEBI:35287 biolink:NamedThing acylcholine A choline ester formed from choline and a carboxylic acid. monarch-merged.owl acylcholines|an acylcholine +1 C6H13NO2R 131.17290 131.09463 C[N+](C)(C)CCOC([*])=O KEGG:C01777 CHEBI:22227|CHEBI:13245|CHEBI:2463 chebi_ontology owl:Class CHEBI:15355 biolink:NamedThing acetylcholine Actylcholine is an ester of acetic acid and choline, which acts as a neurotransmitter. monarch-merged.owl Acetylcholine|O-Acetylcholine|2-acetyloxy-N,N,N-trimethylethanaminium|ACh|acetylcholine|ACETYLCHOLINE|choline acetate|Azetylcholin +1 C7H16NO2 InChI=1S/C7H16NO2/c1-7(9)10-6-5-8(2,3)4/h5-6H2,1-4H3/q+1 OIPILFWXSMYKGL-UHFFFAOYSA-N 146.20748 146.11756 CC(=O)OCC[N+](C)(C)C Wikipedia:Acetylcholine|Drug_Central:65|LINCS:LSM-5888|PMID:21545631|PMID:21601579|Beilstein:1764436|PMID:21130809|PMID:19255787|PMID:14764638|PMID:15231705|PMID:15361288|PMID:20963497|Gmelin:326108|PDBeChem:ACH|PMID:18050502|PMID:15014918|DrugBank:DB03128|PMID:18407448|CAS:51-84-3|PMID:21246223|KEGG:C01996 CHEBI:22197|CHEBI:12686|CHEBI:13715|CHEBI:2416|CHEBI:40559 chebi_ontology owl:Class CHEBI:16353 biolink:NamedThing sinapine monarch-merged.owl owl:Class CHEBI:94442 biolink:NamedThing [3-carboxy-2-(1-oxohexadecoxy)propyl]-trimethylammonium monarch-merged.owl owl:Class CHEBI:133723 biolink:NamedThing naphthalene-1,2,4,8-tetrol monarch-merged.owl owl:Class CHEBI:26925 biolink:NamedThing naphthalenetetrol monarch-merged.owl owl:Class CHEBI:18365 biolink:NamedThing naphthalene-1,3,6,8-tetrol monarch-merged.owl owl:Class CHEBI:51475 biolink:NamedThing naphthohydroquinone monarch-merged.owl owl:Class CHEBI:134357 biolink:NamedThing 8-methylmenaquinol-6 monarch-merged.owl owl:Class CHEBI:18094 biolink:NamedThing 1,4-dihydroxy-2-naphthoic acid monarch-merged.owl owl:Class CHEBI:18151 biolink:NamedThing menaquinol monarch-merged.owl owl:Class CHEBI:28433 biolink:NamedThing phyllohydroquinone monarch-merged.owl owl:Class CHEBI:34063 biolink:NamedThing naphthalene-1,4-diol monarch-merged.owl owl:Class CHEBI:55437 biolink:NamedThing 2-demethylmenaquinol monarch-merged.owl owl:Class CHEBI:6746 biolink:NamedThing menadiol monarch-merged.owl owl:Class CHEBI:133741 biolink:NamedThing (E)-dodec-2-enal monarch-merged.owl owl:Class CHEBI:138631 biolink:NamedThing heptadecanal monarch-merged.owl owl:Class CHEBI:17302 biolink:NamedThing pentadecanal monarch-merged.owl owl:Class CHEBI:17600 biolink:NamedThing hexadecanal monarch-merged.owl owl:Class CHEBI:27836 biolink:NamedThing dodecanal monarch-merged.owl owl:Class CHEBI:50626 biolink:NamedThing 2-hydroxyhexadecanal monarch-merged.owl owl:Class CHEBI:71034 biolink:NamedThing 13-methyltetradecanal monarch-merged.owl owl:Class CHEBI:84067 biolink:NamedThing tetradecanal monarch-merged.owl owl:Class CHEBI:17585 biolink:NamedThing trans-hexadec-2-enal monarch-merged.owl owl:Class CHEBI:133768 biolink:NamedThing (R)-PGA2-S-glutathione conjugate(2-) monarch-merged.owl owl:Class CHEBI:133769 biolink:NamedThing (S)-PGA2-S-glutathione conjugate(2-) monarch-merged.owl owl:Class CHEBI:133771 biolink:NamedThing (R)-PGJ2-S-glutathione conjugate(2-) monarch-merged.owl owl:Class CHEBI:133772 biolink:NamedThing (S)-PGJ2-S-glutathione conjugate(2-) monarch-merged.owl owl:Class CHEBI:62945 biolink:NamedThing thromboxane anion A prostanoid anion that is the conjugate base of a thromboxane. monarch-merged.owl thromboxane anions chebi_ontology owl:Class CHEBI:137046 biolink:NamedThing 6beta,16alpha,17alpha-trihydroxyprogesterone monarch-merged.owl owl:Class CHEBI:139269 biolink:NamedThing 6beta-hydroxycortisone monarch-merged.owl owl:Class CHEBI:139271 biolink:NamedThing 6beta-hydroxycortisol monarch-merged.owl owl:Class CHEBI:16076 biolink:NamedThing 11alpha-hydroxyprogesterone monarch-merged.owl owl:Class CHEBI:16744 biolink:NamedThing pregna-4,9(11)-diene-3,20-dione monarch-merged.owl owl:Class CHEBI:16827 biolink:NamedThing corticosterone A 21-hydroxy steroid that consists of pregn-4-ene substituted by hydroxy groups at positions 11 and 21 and oxo groups at positions 3 and 20. Corticosterone is a 21-carbon steroid hormone of the corticosteroid type produced in the cortex of the adrenal glands. monarch-merged.owl Reichstein's substance H|(11beta)-11,21-dihydroxypregn-4-ene-3,20-dione|11beta,21-dihydroxypregn-4-ene-3,20-dione|17-deoxycortisol|Corticosterone|11beta,21-Dihydroxy-4-pregnene-3,20-dione|11beta,21-dihydroxyprogesterone|Kendall's compound B|corticosterone|CORTICOSTERONE 0 C21H30O4 InChI=1S/C21H30O4/c1-20-8-7-13(23)9-12(20)3-4-14-15-5-6-16(18(25)11-22)21(15,2)10-17(24)19(14)20/h9,14-17,19,22,24H,3-8,10-11H2,1-2H3/t14-,15-,16+,17-,19+,20-,21-/m0/s1 OMFXVFTZEKFJBZ-HJTSIMOOSA-N 346.46050 346.21441 [H][C@@]1(CC[C@@]2([H])[C@]3([H])CCC4=CC(=O)CC[C@]4(C)[C@@]3([H])[C@@H](O)C[C@]12C)C(=O)CO PMID:24446162|PDBeChem:C0R|MetaCyc:CORTICOSTERONE|KEGG:C02140|LINCS:LSM-5814|PMID:11448093|PMID:16817814|HMDB:HMDB0001547|Beilstein:2339601|LIPID_MAPS_instance:LMST02030186|PMID:10438974|Wikipedia:Corticosterone|CAS:50-22-6 CHEBI:3891|CHEBI:19131|CHEBI:57911|CHEBI:41361|CHEBI:14022 chebi_ontology owl:Class CHEBI:16962 biolink:NamedThing cortisone monarch-merged.owl owl:Class CHEBI:16973 biolink:NamedThing 11-deoxycorticosterone A mineralocorticoid that is progesterone substituted at position 21 by a hydroxy group. monarch-merged.owl Deoxycorticosterone|21-Hydroxy-4-pregnene-3,20-dione|Reichstein's substance Q|4-pregnen-21-ol-3,20-dione|21-hydroxypregn-4-ene-3,20-dione|desoxycortone|21-hydroxyprogesterone|DOC|11-Deoxycorticosterone|Cortexone|DESOXYCORTICOSTERONE|Desoxycortone|Kendall's desoxy compound B 0 C21H30O3 InChI=1S/C21H30O3/c1-20-9-7-14(23)11-13(20)3-4-15-16-5-6-18(19(24)12-22)21(16,2)10-8-17(15)20/h11,15-18,22H,3-10,12H2,1-2H3/t15-,16-,17-,18+,20-,21-/m0/s1 ZESRJSPZRDMNHY-YFWFAHHUSA-N 330.46110 330.21949 [H][C@@]1(CC[C@@]2([H])[C@]3([H])CCC4=CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)C(=O)CO PMID:22770225|CAS:64-85-7|Wikipedia:Desoxycorticosterone|PDBeChem:1CA|Reaxys:2062123|Drug_Central:820|LIPID_MAPS_instance:LMST02030087|KEGG:D07792|KEGG:C03205|Beilstein:2062123|MetaCyc:11-DEOXYCORTICOSTERONE CHEBI:713|CHEBI:39642|CHEBI:19123|CHEBI:11314|CHEBI:86536 chebi_ontology owl:Class CHEBI:17026 biolink:NamedThing progesterone A C21-steroid hormone in which a pregnane skeleton carries oxo substituents at positions 3 and 20 and is unsaturated at C(4)-C(5). As a hormone, it is involved in the female menstrual cycle, pregnancy and embryogenesis of humans and other species. monarch-merged.owl luteohormone|Crinone|Progesterone|Gelbkoerperhormon|Progesteron|17alpha-progesterone|(S)-Progesterone|Akrolutin|Agolutin|(S)-Pregn-4-en-3,20-dione|(S)-4-Pregnene-3,20-dione|pregn-4-ene-3,20-dione|progesterone|4-Pregnene-3,20-dione|Delta(4)-pregnene-3,20-dione|PROGESTERONE|corpus luteum hormone 0 C21H30O2 InChI=1S/C21H30O2/c1-13(22)17-6-7-18-16-5-4-14-12-15(23)8-10-20(14,2)19(16)9-11-21(17,18)3/h12,16-19H,4-11H2,1-3H3/t16-,17+,18-,19-,20-,21+/m0/s1 RJKFOVLPORLFTN-LEKSSAKUSA-N 314.46170 314.22458 [H][C@@]12CCC3=CC(=O)CC[C@]3(C)[C@@]1([H])CC[C@]1(C)[C@H](CC[C@@]21[H])C(C)=O Reaxys:1915950|Beilstein:1915950|KEGG:C00410|PMID:9506942|Gmelin:708590|KEGG:D00066|Drug_Central:2279|DrugBank:DB00396|MetaCyc:PROGESTERONE|PDBeChem:STR|Wikipedia:Progesterone|CAS:57-83-0|PMID:10438974|HMDB:HMDB0001830 CHEBI:26269|CHEBI:14896|CHEBI:439|CHEBI:18798|CHEBI:45786|CHEBI:8453 chebi_ontology owl:Class CHEBI:17206 biolink:NamedThing 9,11alpha-epoxypregn-4-ene-3,20-dione monarch-merged.owl owl:Class CHEBI:17650 biolink:NamedThing cortisol A 17alpha-hydroxy-C21-steroid that is pregn-4-ene substituted by oxo groups at positions 3 and 20 and hydroxy groups at positions 11, 17 and 21. Cortisol is a corticosteroid hormone or glucocorticoid produced by zona fasciculata of the adrenal cortex, which is a part of the adrenal gland. It is usually referred to as the "stress hormone" as it is involved in response to stress and anxiety, controlled by corticotropin-releasing hormone (CRH). It increases blood pressure and blood sugar, and reduces immune responses monarch-merged.owl 4-pregnen-11beta,17alpha,21-triol-3,20-dione|11beta,17alpha,21-Trihydroxy-4-pregnene-3,20-dione|17-hydroxycorticosterone|hydrocortisonum|11beta-hydrocortisone|hydrocortisone|cortisol|(11beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione|11beta,17alpha,21-trihydroxy-4-pregnene-3,20-dione|Kendall's compound F|11beta,17,21-trihydroxypregn-4-ene-3,20-dione|Reichstein's substance M|Cortisol|Hydrocortisone|hidrocortisona 0 C21H30O5 InChI=1S/C21H30O5/c1-19-7-5-13(23)9-12(19)3-4-14-15-6-8-21(26,17(25)11-22)20(15,2)10-16(24)18(14)19/h9,14-16,18,22,24,26H,3-8,10-11H2,1-2H3/t14-,15-,16-,18+,19-,20-,21-/m0/s1 JYGXADMDTFJGBT-VWUMJDOOSA-N 362.45990 362.20932 [H][C@@]12CCC3=CC(=O)CC[C@]3(C)[C@@]1([H])[C@@H](O)C[C@@]1(C)[C@@]2([H])CC[C@]1(O)C(=O)CO DrugBank:DB00741|CAS:50-23-7|KEGG:C00735|Wikipedia:Hydrocortisone|PDBeChem:HCY|KEGG:D00088|LIPID_MAPS_instance:LMST02030001|PMID:10438974|Patent:US2602769|LINCS:LSM-5980|Beilstein:1354819|Drug_Central:1388|PMID:2268561 CHEBI:14023|CHEBI:58221|CHEBI:24633|CHEBI:3893 chebi_ontology owl:Class CHEBI:18084 biolink:NamedThing testololactone monarch-merged.owl owl:Class CHEBI:23618 biolink:NamedThing deoxycortisol A 3,20-dioxo steroid having the structure of cortisol but lacking one or more of its hydroxy groups. monarch-merged.owl deoxycortisols chebi_ontology owl:Class CHEBI:27584 biolink:NamedThing aldosterone A pregnane-based steroidal hormone produced by the outer-section (zona glomerulosa) of the adrenal cortex in the adrenal gland, and acts on the distal tubules and collecting ducts of the kidney to cause the conservation of sodium, secretion of potassium, increased water retention, and increased blood pressure. The overall effect of aldosterone is to increase reabsorption of ions and water in the kidney. monarch-merged.owl 11beta,21-Dihydroxy-3,20-dioxo-4-pregnen-18-al|(+)-aldosterone|11beta,21-dihydroxy-3,20-dioxopregn-4-en-18-al|aldosterone|Aldosterone|ALDOSTERONE|(11beta)-11,21-dihydroxy-3,20-dioxopregn-4-en-18-al 0 C21H28O5 InChI=1S/C21H28O5/c1-20-7-6-13(24)8-12(20)2-3-14-15-4-5-16(18(26)10-22)21(15,11-23)9-17(25)19(14)20/h8,11,14-17,19,22,25H,2-7,9-10H2,1H3/t14-,15-,16+,17-,19+,20-,21+/m0/s1 PQSUYGKTWSAVDQ-ZVIOFETBSA-N 360.44400 360.19367 [H][C@@]1(CC[C@@]2([H])[C@]3([H])CCC4=CC(=O)CC[C@]4(C)[C@@]3([H])[C@@H](O)C[C@]12C=O)C(=O)CO KEGG:C01780|Wikipedia:Aldosterone|HMDB:HMDB0000037|LIPID_MAPS_instance:LMST02030026|Beilstein:3224996|Drug_Central:111|CAS:52-39-1|Reaxys:3224996|PMID:10438974|DrugBank:DB04630|PDBeChem:AS4|LINCS:LSM-42770 CHEBI:40919|CHEBI:22306|CHEBI:2563 chebi_ontology owl:Class CHEBI:49269 biolink:NamedThing 7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oic acid monarch-merged.owl owl:Class CHEBI:49270 biolink:NamedThing 12alpha-hydroxy-3-oxochola-4,6-dien-24-oic acid monarch-merged.owl owl:Class CHEBI:59418 biolink:NamedThing 15beta-hydroxyprogesterone monarch-merged.owl owl:Class CHEBI:62117 biolink:NamedThing 6beta-hydroxyprogesterone monarch-merged.owl owl:Class CHEBI:763 biolink:NamedThing algestone monarch-merged.owl owl:Class CHEBI:77166 biolink:NamedThing 3-oxo-Delta(1),Delta(4)-steroid monarch-merged.owl owl:Class CHEBI:78595 biolink:NamedThing 21-dehydrocortisol monarch-merged.owl owl:Class CHEBI:78596 biolink:NamedThing 21-dehydrocortisone monarch-merged.owl owl:Class CHEBI:78600 biolink:NamedThing 11-dehydrocorticosterone monarch-merged.owl owl:Class CHEBI:78601 biolink:NamedThing 11,21-dioxoprogesterone monarch-merged.owl owl:Class CHEBI:78686 biolink:NamedThing Delta(4)-dafachronic acid monarch-merged.owl owl:Class CHEBI:83776 biolink:NamedThing 3-oxo-23,24-bisnorchol-4-en-22-oic acid monarch-merged.owl owl:Class CHEBI:85910 biolink:NamedThing 9alpha-hydroxy-3-oxo-23,24-bisnorchol-4-en-22-oic acid monarch-merged.owl owl:Class CHEBI:88109 biolink:NamedThing 7alpha-hydroxy-3-oxochol-4-en-24-oic acid monarch-merged.owl owl:Class CHEBI:88112 biolink:NamedThing 3-oxochola-4,6-dien-24-oic acid monarch-merged.owl owl:Class CHEBI:59203 biolink:NamedThing straight-chain fatty acid anion A fatty acid anion formed by deprotonation of the carboxylic acid functional group of a straight-chain fatty acid. monarch-merged.owl straight-chain FA anion|straight-chain fatty acid anions|straight-chain FA anions chebi_ontology owl:Class CHEBI:18322 biolink:NamedThing 6-oxohexanoate monarch-merged.owl owl:Class CHEBI:27647 biolink:NamedThing prostaglandin G2 monarch-merged.owl owl:Class CHEBI:147343 biolink:NamedThing 2-hydroperoxy fatty acid monarch-merged.owl owl:Class CHEBI:165279 biolink:NamedThing 11-HpETE monarch-merged.owl owl:Class CHEBI:133819 biolink:NamedThing 13-HODE(1-) monarch-merged.owl owl:Class CHEBI:133820 biolink:NamedThing 9-HODE(1-) A HODE(1-) that is the conjugate base of 9-HODE, obtained by deprotonation of the carboxy group; major species at pH 7.3. monarch-merged.owl (10E,12Z)-9-hydroxyoctadeca-10,12-dienoate|(10E,12Z)-9-hydroxyoctadecadienoate|9-hydroxy-(10E,12Z)-octadecadienoate -1 C18H31O3 InChI=1S/C18H32O3/c1-2-3-4-5-6-8-11-14-17(19)15-12-9-7-10-13-16-18(20)21/h6,8,11,14,17,19H,2-5,7,9-10,12-13,15-16H2,1H3,(H,20,21)/p-1/b8-6-,14-11+ NPDSHTNEKLQQIJ-ZJHFMPGASA-M 295.438 295.22787 C(=C/C=C/C(CCCCCCCC([O-])=O)O)/CCCCC PMID:11192938 chebi_ontology owl:Class CHEBI:136522 biolink:NamedThing (9Z,12Z)-11-hydroxyoctadecadienoate monarch-merged.owl owl:Class CHEBI:133860 biolink:NamedThing polyunsaturated hydroxylipid monarch-merged.owl owl:Class CHEBI:1467 biolink:NamedThing (2S)-2-isopropyl-3-oxosuccinic acid monarch-merged.owl owl:Class CHEBI:15753 biolink:NamedThing 2-oxoadipic acid monarch-merged.owl owl:Class CHEBI:16666 biolink:NamedThing prephenic acid monarch-merged.owl owl:Class CHEBI:17801 biolink:NamedThing 4-hydroxy-4-methyl-2-oxoglutaric acid monarch-merged.owl owl:Class CHEBI:28245 biolink:NamedThing (S)-2-amino-6-oxopimelic acid monarch-merged.owl owl:Class CHEBI:30744 biolink:NamedThing oxaloacetic acid monarch-merged.owl owl:Class CHEBI:30842 biolink:NamedThing oxomalonic acid monarch-merged.owl owl:Class CHEBI:30915 biolink:NamedThing 2-oxoglutaric acid An oxo dicarboxylic acid that consists of glutaric acid bearing an oxo substituent at position 2. It is an intermediate metabolite in Krebs cycle. monarch-merged.owl 2-oxopentanedioic acid|Oxoglutaric acid|alpha-ketoglutaric acid|alpha-Ketoglutaric acid|2-Ketoglutaric acid 0 C5H6O5 InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10) KPGXRSRHYNQIFN-UHFFFAOYSA-N 146.09810 146.02152 OC(=O)CCC(=O)C(O)=O PMID:20200292|CAS:328-50-7|PMID:21964641|Wikipedia:Alpha-Ketoglutaric_acid|Reaxys:1705689|Gmelin:602480|PMID:20155414|PDBeChem:AKG|KNApSAcK:C00000769|PMID:18990406|PMID:20636327|MetaCyc:2-KETOGLUTARATE|HMDB:HMDB0000208|DrugBank:DB02926|Beilstein:1705689|PMID:20583149|PMID:17439666|KEGG:C00026 CHEBI:40661|CHEBI:19749|CHEBI:1253 chebi_ontology owl:Class CHEBI:30923 biolink:NamedThing 4-hydroxy-2-oxoglutaric acid monarch-merged.owl owl:Class CHEBI:32808 biolink:NamedThing (Z)-5-oxohex-2-enedioic acid monarch-merged.owl owl:Class CHEBI:37259 biolink:NamedThing 3-oxopimelic acid monarch-merged.owl owl:Class CHEBI:37440 biolink:NamedThing 3-oxoadipic acid monarch-merged.owl owl:Class CHEBI:64927 biolink:NamedThing 2-oxohex-3-enedioic acid monarch-merged.owl owl:Class CHEBI:67104 biolink:NamedThing 4-nitro-6-oxohepta-2,4-dienedioic acid monarch-merged.owl owl:Class CHEBI:72700 biolink:NamedThing 2-oxopimelic acid monarch-merged.owl owl:Class CHEBI:73089 biolink:NamedThing 4-hydroxy-2-oxoheptanedioic acid monarch-merged.owl owl:Class CHEBI:13389 biolink:NamedThing NAD Abbreviation for nicotinamide-adenine dinucleotide when its oxidation state is unknown or unspecified. It is used in metabolic pathways like glycolysis and citric acid cycle. monarch-merged.owl nicotinamide-adenine dinucleotide Wikipedia:Nicotinamide_adenine_dinucleotide|HMDB:HMDB0000902 chebi_ontology owl:Class CHEBI:25524 biolink:NamedThing NAD(P) A coenzyme that may be NAD or NADP. monarch-merged.owl chebi_ontology owl:Class CHEBI:13390 biolink:NamedThing NAD(P)(+) A coenzyme that may be NAD(+) or NADP(+). monarch-merged.owl chebi_ontology owl:Class CHEBI:13392 biolink:NamedThing NAD(P)H A coenzyme that may be NADH or NADPH. monarch-merged.owl chebi_ontology owl:Class CHEBI:25523 biolink:NamedThing NADP Abbreviation for nicotinamide-adenine dinucleotide phosphate when its oxidation state is unknown or unspecified. monarch-merged.owl nicotinamide-adenine dinucleotide phosphate chebi_ontology owl:Class CHEBI:133897 biolink:NamedThing methanesulfinic acid monarch-merged.owl owl:Class CHEBI:37783 biolink:NamedThing organosulfinic acid monarch-merged.owl owl:Class CHEBI:16209 biolink:NamedThing hypotaurocyamine monarch-merged.owl owl:Class CHEBI:16345 biolink:NamedThing 3-sulfino-L-alanine monarch-merged.owl owl:Class CHEBI:37794 biolink:NamedThing aminosulfinic acid monarch-merged.owl owl:Class CHEBI:44576 biolink:NamedThing 2'-hydroxybiphenyl-2-sulfinic acid monarch-merged.owl owl:Class CHEBI:137543 biolink:NamedThing (5S,15S)-dihydroperoxy-(6E,8Z,11Z,13E)-icosatetraenoate monarch-merged.owl owl:Class CHEBI:133902 biolink:NamedThing dUMP residue(1-) monarch-merged.owl owl:Class CHEBI:137386 biolink:NamedThing thymidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:85445 biolink:NamedThing 2'-deoxyguanosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:85452 biolink:NamedThing 2'-deoxycytidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:90615 biolink:NamedThing 2'-deoxyadenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:137542 biolink:NamedThing (5S,6R)-dihydroxy-(7E,9E,11Z,14Z)-icosatetraenoate monarch-merged.owl owl:Class CHEBI:133910 biolink:NamedThing 2-trans-abscisic acid D-glucosyl ester monarch-merged.owl owl:Class CHEBI:24278 biolink:NamedThing glucoside monarch-merged.owl glucosides chebi_ontology owl:Class CHEBI:35436 biolink:NamedThing D-glucoside Any glucoside in which the glycoside group is derived from D-glucose. monarch-merged.owl D-glucosides|D-Glucoside|a D-glucoside 0 C6H11O6R 179.148 179.05556 [C@@H]1(OC([C@H](O)[C@H]([C@@H]1O)O)O*)CO KEGG:C01798 CHEBI:21009|CHEBI:4173 chebi_ontology owl:Class CHEBI:60979 biolink:NamedThing alpha-glucoside monarch-merged.owl owl:Class CHEBI:60980 biolink:NamedThing beta-glucoside monarch-merged.owl owl:Class CHEBI:71352 biolink:NamedThing L-glucoside monarch-merged.owl owl:Class CHEBI:18013 biolink:NamedThing 4-O-feruloyl-D-quinic acid monarch-merged.owl owl:Class CHEBI:2814 biolink:NamedThing arecoline A tetrahydropyridine that is 1,2,5,6-tetrahydropyridine with a methyl group at position 1, and a methoxycarbonyl group at position 3. An alkaloid found in the areca nut, it acts as an agonist of muscarinic acetylcholine. monarch-merged.owl arekolin|methylarecaidin|methylarecaiden|arecaline|arecholine|methyl 1-methyl-1,2,5,6-tetrahydropyridine-3-carboxylate|arecaidine methyl ester 0 C8H13NO2 InChI=1S/C8H13NO2/c1-9-5-3-4-7(6-9)8(10)11-2/h4H,3,5-6H2,1-2H3 HJJPJSXJAXAIPN-UHFFFAOYSA-N 155.19430 155.09463 COC(=O)C1=CCCN(C)C1 HMDB:HMDB0030353|PMID:22493525|Patent:CN101411705|KNApSAcK:C00002020|PMID:23895157|Patent:CN102464607|Wikipedia:Arecoline|PMID:23525646|Reaxys:123045|Patent:US2506458|LINCS:LSM-15214|CAS:63-75-2|KEGG:C10129|DrugBank:DB04365|PMID:21809341 chebi_ontology owl:Class CHEBI:35486 biolink:NamedThing maleate ester monarch-merged.owl owl:Class CHEBI:36087 biolink:NamedThing cinnamate ester monarch-merged.owl owl:Class CHEBI:80535 biolink:NamedThing methyl farnesoate monarch-merged.owl owl:Class CHEBI:87124 biolink:NamedThing 6-tuliposide B monarch-merged.owl owl:Class CHEBI:52782 biolink:NamedThing O-acyl carbohydrate monarch-merged.owl owl:Class CHEBI:16279 biolink:NamedThing 1-O-trans-cinnamoyl-beta-D-glucopyranose monarch-merged.owl owl:Class CHEBI:16590 biolink:NamedThing O-feruloylgalactaric acid monarch-merged.owl owl:Class CHEBI:16681 biolink:NamedThing O-sinapoylglucaric acid monarch-merged.owl owl:Class CHEBI:27083 biolink:NamedThing trehalose mycolate monarch-merged.owl owl:Class CHEBI:27993 biolink:NamedThing 1,2-di-O-sinapoyl-beta-D-glucose monarch-merged.owl owl:Class CHEBI:71498 biolink:NamedThing 1-O-(4-coumaroyl)-beta-D-glucose monarch-merged.owl owl:Class CHEBI:71512 biolink:NamedThing 1-O-vanilloyl-beta-D-glucose monarch-merged.owl owl:Class CHEBI:133911 biolink:NamedThing alpha-D-Man-(1->3)-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:133912 biolink:NamedThing alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61900 biolink:NamedThing alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:38758 biolink:NamedThing isocoumarins monarch-merged.owl owl:Class CHEBI:38759 biolink:NamedThing isocoumarin monarch-merged.owl owl:Class CHEBI:38762 biolink:NamedThing isochromanes monarch-merged.owl owl:Class CHEBI:16252 biolink:NamedThing 6-methoxymellein monarch-merged.owl owl:Class CHEBI:16368 biolink:NamedThing 6-hydroxymellein monarch-merged.owl owl:Class CHEBI:38760 biolink:NamedThing mellein monarch-merged.owl owl:Class CHEBI:133939 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z)-20-hydroxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:90824 biolink:NamedThing (7Z,10Z,13R,14E,16Z,19Z)-13-hydroxydocosapentaenoate monarch-merged.owl owl:Class CHEBI:16968 biolink:NamedThing 1,8-diazacyclotetradecane-2,9-dione monarch-merged.owl owl:Class CHEBI:18044 biolink:NamedThing dialkyl ketone monarch-merged.owl owl:Class CHEBI:22951 biolink:NamedThing butanone Any ketone that is butane substituted by an oxo group at unspecified position. monarch-merged.owl butanones chebi_ontology owl:Class CHEBI:24523 biolink:NamedThing heptenone monarch-merged.owl owl:Class CHEBI:24573 biolink:NamedThing hexanone monarch-merged.owl owl:Class CHEBI:25579 biolink:NamedThing nonanone Any ketone that is nonane substituted by an oxo group at unspecified position. monarch-merged.owl nonanones chebi_ontology owl:Class CHEBI:25892 biolink:NamedThing pentanone monarch-merged.owl owl:Class CHEBI:26292 biolink:NamedThing propanones A ketone that is propane carrying at least one oxo substituent. monarch-merged.owl chebi_ontology owl:Class CHEBI:26872 biolink:NamedThing terpene ketone monarch-merged.owl owl:Class CHEBI:46640 biolink:NamedThing diketone A compound that contains two ketone functionalities. monarch-merged.owl diketones Wikipedia:Diketone chebi_ontology owl:Class CHEBI:51721 biolink:NamedThing alpha,beta-unsaturated ketone A ketone of general formula R(1)R(2)C=CR(3)-C(=O)R(4) (R(4) =/= H) or R(1)C#C-C(=O)R(2) (R(2) =/= H) in which the ketonic C=O function is conjugated to an unsaturated C-C bond at the alpha,beta position. monarch-merged.owl alpha,beta-unsaturated ketones chebi_ontology owl:Class CHEBI:51847 biolink:NamedThing ketoester monarch-merged.owl owl:Class CHEBI:51851 biolink:NamedThing ketonitrile monarch-merged.owl owl:Class CHEBI:51867 biolink:NamedThing methyl ketone A ketone of formula RC(=O)CH3 (R =/= H). monarch-merged.owl methyl ketones chebi_ontology owl:Class CHEBI:52395 biolink:NamedThing oxyketone A compound with the general formula R2C=O (R=/=H) where one or more of the R groups contains an oxy (-O-) group. monarch-merged.owl oxyketones chebi_ontology owl:Class CHEBI:55380 biolink:NamedThing beta-hydroxy ketone monarch-merged.owl owl:Class CHEBI:63976 biolink:NamedThing 13,14-dihydro-15-keto-PGF2alpha monarch-merged.owl owl:Class CHEBI:30245 biolink:NamedThing linoleate An octadecadienoate with cis- double bonds at the 9- and 12- positions; the conjugate base of linoleic acid. monarch-merged.owl cis-Delta(9,12)-octadecadienoate|(9Z,12Z)-octadeca-9,12-dienoate|cis,cis-linoleate|cis,cis-9,12-octadecadienoate|(Z,Z)-9,12-octadecadienoic acid, ion(1-)|(9Z,12Z)-octadecadienoate|linoleic acid, ion(1-)|(9Z,12Z)-9,12-octadecadienoic acid, ion(1-) -1 C18H31O2 InChI=1S/C18H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h6-7,9-10H,2-5,8,11-17H2,1H3,(H,19,20)/p-1/b7-6-,10-9- OYHQOLUKZRVURQ-HZJYTTRNSA-M 279.43754 279.23295 CCCCC\C=C/C\C=C/CCCCCCCC([O-])=O MetaCyc:LINOLEIC_ACID|Beilstein:4139597|Gmelin:667201|Reaxys:4139597|CAS:1509-85-9|KEGG:C01595 CHEBI:12272|CHEBI:14515|CHEBI:20826 chebi_ontology owl:Class CHEBI:86264 biolink:NamedThing rat metabolite monarch-merged.owl owl:Class CHEBI:76206 biolink:NamedThing xenobiotic metabolite Any metabolite produced by metabolism of a xenobiotic compound. monarch-merged.owl xenobiotic metabolites chebi_ontology owl:Class CHEBI:16336 biolink:NamedThing hyaluronic acid A mucopolysaccharide composed of N-acetylglucosamine and glucuronic acid subunits. It is found in the connective tissues of vertebrates. A principal constituent of the extracellular matrix (ECM), it mediates the growth and metastasis of tumour cells. monarch-merged.owl [beta-N-Acetyl-D-glucosaminyl(1,4)beta-D-glucuronosyl(1,3)]n|Hyaluronsaeure|acido hialuronico|[beta-D-glucopyranuronosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl-(1->4)]n|acide hyaluronique|hyaluronan|Hyaluronic acid 0 (C14H21NO12)n HMDB:HMDB0010366|KEGG:G10505|Reaxys:8187837|PMID:18290544|PMID:11122186|CAS:9004-61-9|Beilstein:8538277|PMID:18056362|Wikipedia:Hyaluronan|KEGG:C00518|KEGG:D08043 CHEBI:24622|CHEBI:5772|CHEBI:14412|CHEBI:24623 chebi_ontology owl:Class CHEBI:83399 biolink:NamedThing marine xenobiotic metabolite Any metabolite produced by metabolism of a xenobiotic compound in marine macro- and microorganisms. monarch-merged.owl marine xenobiotic metabolites chebi_ontology owl:Class CHEBI:35509 biolink:NamedThing androstane monarch-merged.owl androstane 0 C19H32 InChI=1S/C19H32/c1-18-11-5-7-16(18)15-9-8-14-6-3-4-12-19(14,2)17(15)10-13-18/h14-17H,3-13H2,1-2H3/t14?,15-,16-,17-,18-,19-/m0/s1 QZLYKIGBANMMBK-FZFXZXLVSA-N 260.45738 260.25040 [H][C@@]12CCC3CCCC[C@]3(C)[C@@]1([H])CC[C@]1(C)CCC[C@@]21[H] CAS:24887-75-0|Beilstein:5247532|LIPID_MAPS_instance:LMST02020000 chebi_ontology owl:Class CHEBI:78675 biolink:NamedThing fundamental metabolite Any metabolite produced by all living cells. monarch-merged.owl essential metabolite|essential metabolites|fundamental metabolites chebi_ontology owl:Class CHEBI:77307 biolink:NamedThing cardioprotective agent Any protective agent that is able to prevent damage to the heart. monarch-merged.owl cardioprotective agents chebi_ontology owl:Class CHEBI:48356 biolink:NamedThing protic solvent A polar solvent that is capable of acting as a hydron (proton) donor. monarch-merged.owl protogenic solvent chebi_ontology owl:Class CHEBI:85234 biolink:NamedThing human blood serum metabolite Any metabolite (endogenous or exogenous) found in human blood serum samples. monarch-merged.owl human blood serum metabolites chebi_ontology owl:Class CHEBI:24937 biolink:NamedThing jasmonates monarch-merged.owl owl:Class CHEBI:75768 biolink:NamedThing mammalian metabolite Any animal metabolite produced during a metabolic reaction in mammals. monarch-merged.owl mammalian metabolites CHEBI:77464|CHEBI:77744 chebi_ontology owl:Class CHEBI:84087 biolink:NamedThing human urinary metabolite Any metabolite (endogenous or exogenous) found in human urine samples. monarch-merged.owl human urinary metabolites chebi_ontology owl:Class CHEBI:76797 biolink:NamedThing EC 2.5.1.18 (glutathione transferase) inhibitor An EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitor that interferes with the action of a glutathione transferase (EC 2.5.1.18). monarch-merged.owl S-(hydroxyalkyl)glutathione lyase inhibitors|glutathione S-aralkyltransferase inhibitors|glutathione S-aralkyltransferase inhibitor|glutathione S-alkyl transferase inhibitor|glutathione S-aryltransferase inhibitor|EC 2.5.1.18 inhibitors|glutathione transferase inhibitor|glutathione transferase (EC 2.5.1.18) inhibitor|RX:glutathione R-transferase inhibitors|glutathione S-aryltransferase inhibitors|S-(hydroxyalkyl)glutathione lyase inhibitor|glutathione S-alkyltransferase inhibitor|EC 2.5.1.18 (glutathione transferase) inhibitors|EC 2.5.1.18 inhibitor|glutathione S-alkyl transferase inhibitors|glutathione S-transferase inhibitors|RX:glutathione R-transferase inhibitor|glutathione S-transferase inhibitor|glutathione S-alkyltransferase inhibitors|glutathione transferase inhibitors|glutathione transferase (EC 2.5.1.18) inhibitors Wikipedia:Glutathione_S-transferase chebi_ontology owl:Class CHEBI:67079 biolink:NamedThing anti-inflammatory agent Any compound that has anti-inflammatory effects. monarch-merged.owl antiinflammatory agent|anti-inflammatory agents|antiinflammatory agents chebi_ontology owl:Class CHEBI:64033 biolink:NamedThing EC 3.5.1.99 (fatty acid amide hydrolase) inhibitor monarch-merged.owl owl:Class CHEBI:38317 biolink:NamedThing EC 1.13.11.27 (4-hydroxyphenylpyruvate dioxygenase) inhibitor monarch-merged.owl owl:Class CHEBI:74518 biolink:NamedThing anti-obesity agent monarch-merged.owl owl:Class CHEBI:25491 biolink:NamedThing nematicide A substance used to destroy pests of the phylum Nematoda (roundworms). monarch-merged.owl nematicides|nematocide|nematocides Wikipedia:Nematicide chebi_ontology owl:Class CHEBI:76507 biolink:NamedThing marine metabolite Any metabolite produced during a metabolic reaction in marine macro- and microorganisms. monarch-merged.owl marine metabolites CHEBI:77078 chebi_ontology owl:Class CHEBI:17549 biolink:NamedThing 5-aminolevulinic acid The simplest delta-amino acid in which the hydrogens at the gamma position are replaced by an oxo group. It is metabolised to protoporphyrin IX, a photoactive compound which accumulates in the skin. Used (in the form of the hydrochloride salt)in combination with blue light illumination for the treatment of minimally to moderately thick actinic keratosis of the face or scalp. monarch-merged.owl 5-ALA|aminolevulinic acid|5-Amino-4-oxovaleric acid|dALA|5-Amino-4-oxopentanoate|delta-aminolevulinic acid|5-amino-4-oxopentanoic acid|delta-ALA|5-Aminolevulinate 0 C5H9NO3 InChI=1S/C5H9NO3/c6-3-4(7)1-2-5(8)9/h1-3,6H2,(H,8,9) ZGXJTSGNIOSYLO-UHFFFAOYSA-N 131.12990 131.05824 NCC(=O)CCC(O)=O HMDB:HMDB0001149|PMID:19378778|PMID:11303952|CAS:106-60-5|PMID:23291627|DrugBank:DB00855|PMID:23307195|Wikipedia:Aminolevulinic_acid|KEGG:C00430|PMID:22378066|PMID:23360321|KNApSAcK:C00007378|PMID:15756058|LINCS:LSM-5677|PMID:7890117|Drug_Central:166|PMID:23299429|KEGG:D07567|PMID:23339045|PMID:23242333|PMID:15996585|Reaxys:1759139|PMID:18982627|Beilstein:1759139|PMID:22700502 CHEBI:20547|CHEBI:2034 chebi_ontology owl:Class CHEBI:50514 biolink:NamedThing vasoconstrictor agent Drug used to cause constriction of the blood vessels. monarch-merged.owl chebi_ontology owl:Class CHEBI:38161 biolink:NamedThing chelator A ligand with two or more separate binding sites that can bind to a single metallic central atom, forming a chelate. monarch-merged.owl chelators|Chelating agent|chelating agents|complexon|Metal chelator KEGG:C00917|KEGG:C02169 CHEBI:23090|CHEBI:3585|CHEBI:6789 chebi_ontology owl:Class CHEBI:16995 biolink:NamedThing oxalic acid An alpha,omega-dicarboxylic acid that is ethane substituted by carboxyl groups at positions 1 and 2. monarch-merged.owl OXALIC ACID|HOOCCOOH|Oxalsaeure|oxalic acid|Oxalic acid|Ethanedioic acid|Ethandisaeure|ethane-1,2-dioic acid|H2ox 0 C2H2O4 InChI=1S/C2H2O4/c3-1(4)2(5)6/h(H,3,4)(H,5,6) MUBZPKHOEPUJKR-UHFFFAOYSA-N 90.03490 89.99531 OC(=O)C(O)=O Gmelin:2208|PMID:22735334|PDBeChem:OXD|HMDB:HMDB0002329|LIPID_MAPS_instance:LMFA01170031|Wikipedia:Oxalic_acid|Reaxys:385686|KEGG:C00209|KNApSAcK:C00001198|CAS:144-62-7|PMID:15587083|Beilstein:385686|MetaCyc:OXALATE|DrugBank:DB03902 CHEBI:44583|CHEBI:7811|CHEBI:25730 chebi_ontology owl:Class CHEBI:35623 biolink:NamedThing anticonvulsant A drug used to prevent seizures or reduce their severity. monarch-merged.owl Antikonvulsivum|anti-convulsive agent|Antiepileptika|anticonvulsive agent|antiepileptiques|antiepileptique|anti-convulsants|anticonvulsants|antiepileptics|antiepileptic|anti-convulsant|Antiepileptikum|Antikonvulsiva|anti-convulsive agents|anticonvulsive agents chebi_ontology owl:Class CHEBI:84735 biolink:NamedThing algal metabolite Any eukaryotic metabolite produced during a metabolic reaction in algae including unicellular organisms like chlorella and diatoms to multicellular organisms like giant kelps and brown algae. monarch-merged.owl algal metabolites chebi_ontology owl:Class CHEBI:75767 biolink:NamedThing animal metabolite Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals. monarch-merged.owl animal metabolites CHEBI:77743|CHEBI:77721 chebi_ontology owl:Class CHEBI:39150 biolink:NamedThing 4-oxopentanoate A member of the class of oxopentanoates that is the conjugate base of 4-oxopentanoic acid. monarch-merged.owl 4-oxopentanoate|3-acetylpropionate|levulinate|levulate|4-ketovalerate|beta-acetylpropionate|4-oxovalerate|laevulinate|gamma-ketovalerate -1 C5H7O3 InChI=1S/C5H8O3/c1-4(6)2-3-5(7)8/h2-3H2,1H3,(H,7,8)/p-1 JOOXCMJARBKPKM-UHFFFAOYSA-M 115.10728 115.04007 CC(=O)CCC([O-])=O Reaxys:3537533|Gmelin:325844|Beilstein:3537533 chebi_ontology owl:Class CHEBI:53000 biolink:NamedThing epitope The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds. monarch-merged.owl antigenic determinant|epitope role|epitope function chebi_ontology owl:Class CHEBI:140399 biolink:NamedThing specialised pro-resolving mediator monarch-merged.owl owl:Class CHEBI:68495 biolink:NamedThing apoptosis inducer Any substance that induces the process of apoptosis (programmed cell death) in multi-celled organisms. monarch-merged.owl Type I programmed cell-death inducer|Type I cell-death inducers|Type I programmed cell-death inducers|apoptosis inducers|Type I cell-death inducer chebi_ontology owl:Class CHEBI:59544 biolink:NamedThing phosphoantigen monarch-merged.owl owl:Class CHEBI:32551 biolink:NamedThing L-lysinium(1+) An optically active form of lysinium having L-configuration. monarch-merged.owl L-lysinium(1+)|(2S)-2,6-diammoniohexanoate|L-lysine|L-lysinium|L-lysine monocation +1 C6H15N2O2 InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+1/t5-/m0/s1 KDXKERNSBIXSRK-YFKPBYRVSA-O 147.19558 147.11280 [NH3+]CCCC[C@H]([NH3+])C([O-])=O Gmelin:1149956|MetaCyc:LYS chebi_ontology owl:Class CHEBI:83039 biolink:NamedThing crustacean metabolite An animal metabolite produced by arthropods such as crabs, lobsters, crayfish, shrimps and krill. monarch-merged.owl crustacean metabolites chebi_ontology owl:Class CHEBI:35516 biolink:NamedThing cholestane monarch-merged.owl cholestane 0 C27H48 InChI=1S/C27H48/c1-19(2)9-8-10-20(3)23-14-15-24-22-13-12-21-11-6-7-17-26(21,4)25(22)16-18-27(23,24)5/h19-25H,6-18H2,1-5H3/t20-,21?,22+,23-,24+,25+,26+,27-/m1/s1 XIIAYQZJNBULGD-LDHZKLTISA-N 372.67002 372.37560 [H][C@@]1(CC[C@@]2([H])[C@]3([H])CCC4CCCC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C Beilstein:5334741|Wikipedia:Cholestane|CAS:14982-53-7|LIPID_MAPS_instance:LMST01010000 chebi_ontology owl:Class CHEBI:39276 biolink:NamedThing fumigant monarch-merged.owl owl:Class CHEBI:3165 biolink:NamedThing bradykinin A linear nonapeptide messenger belonging to the kinin group of proteins, with amino acid sequence RPPGFSPFR. Enzymatically produced from kallidin in the blood, it is a powerful vasodilator that causes smooth muscle contraction, and may mediate inflammation. monarch-merged.owl L-arginyl-L-prolyl-L-prolylglycyl-L-phenylalanyl-L-seryl-L-prolyl-L-phenylalanyl-L-arginine|L-bradykinin|L-Arg-L-Pro-L-Pro-Gly-L-Phe-L-Ser-L-Pro-L-Phe-L-Arg|Arg-Pro-Pro-Gly-Phe-Ser-Pro-Phe-Arg|BK|RPPGFSPFR 0 C50H73N15O11 InChI=1S/C50H73N15O11/c51-32(16-7-21-56-49(52)53)45(72)65-25-11-20-39(65)47(74)64-24-9-18-37(64)43(70)58-28-40(67)59-34(26-30-12-3-1-4-13-30)41(68)62-36(29-66)46(73)63-23-10-19-38(63)44(71)61-35(27-31-14-5-2-6-15-31)42(69)60-33(48(75)76)17-8-22-57-50(54)55/h1-6,12-15,32-39,66H,7-11,16-29,51H2,(H,58,70)(H,59,67)(H,60,69)(H,61,71)(H,62,68)(H,75,76)(H4,52,53,56)(H4,54,55,57)/t32-,33-,34-,35-,36-,37-,38-,39-/m0/s1 QXZGBUJJYSLZLT-FDISYFBBSA-N 1060.20850 1059.56140 N[C@@H](CCCNC(N)=N)C(=O)N1CCC[C@H]1C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CO)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCCNC(N)=N)C(O)=O Wikipedia:Bradykinin|PMID:11799074|PMID:11975815|PMID:27432758|PMID:18127230|PMID:8723398|PMID:13811230|CAS:58-82-2|Reaxys:24162492|PMID:16680069|PMID:27445816|PMID:15105283|PMID:7859389|PMID:9403361|PMID:14597148|PMID:13446366|PMID:27318425|PMID:27328010|Reaxys:2801232 chebi_ontology owl:Class CHEBI:83762 biolink:NamedThing EC 3.2.1.28 (alpha,alpha-trehalase) inhibitor monarch-merged.owl owl:Class CHEBI:62488 biolink:NamedThing signalling molecule A molecular messenger in which the molecule is specifically involved in transmitting information between cells. Such molecules are released from the cell sending the signal, cross over the gap between cells by diffusion, and interact with specific receptors in another cell, triggering a response in that cell by activating a series of enzyme controlled reactions which lead to changes inside the cell. monarch-merged.owl signal molecule|signalling molecules|signaling molecule|signaling molecules|signal molecules chebi_ontology owl:Class CHEBI:24127 biolink:NamedThing fungicide monarch-merged.owl owl:Class CHEBI:72651 biolink:NamedThing 9-HODE A HODE that consists of (10E,12Z)-octadecadienoic acid with the hydroxy substituent located at position 9. monarch-merged.owl 9-hydroxy-trans-10,cis-12-octadecadienoic acid|(10E,12Z)-9-hydroxyoctadeca-10,12-dienoic acid|9-hydroxy-10E,12Z-octadecadienoic acid|(10E,12Z)-9-HODE 0 C18H32O3 InChI=1S/C18H32O3/c1-2-3-4-5-6-8-11-14-17(19)15-12-9-7-10-13-16-18(20)21/h6,8,11,14,17,19H,2-5,7,9-10,12-13,15-16H2,1H3,(H,20,21)/b8-6-,14-11+ NPDSHTNEKLQQIJ-ZJHFMPGASA-N 296.44490 296.23514 CCCCC\C=C/C=C/C(O)CCCCCCCC(O)=O PMID:24760997|PMID:22790953|Reaxys:1914445|LIPID_MAPS_instance:LMFA02000151 chebi_ontology owl:Class CHEBI:35718 biolink:NamedThing antifungal agent An antimicrobial agent that destroys fungi by suppressing their ability to grow or reproduce. monarch-merged.owl antifungal|antifungal drug|antifungal drugs|antifungal agents|antifungals chebi_ontology owl:Class CHEBI:63726 biolink:NamedThing neuroprotective agent Any compound that can be used for the treatment of neurodegenerative disorders. monarch-merged.owl neuroprotectants|neuroprotectant|neuroprotective agents chebi_ontology owl:Class CHEBI:18019 biolink:NamedThing L-lysine An L-alpha-amino acid; the L-isomer of lysine. monarch-merged.owl L-lysine|6-ammonio-L-norleucine|(S)-alpha,epsilon-diaminocaproic acid|Lys|K|lysinum|(S)-2,6-diaminohexanoic acid|(2S)-2,6-diaminohexanoic acid|(S)-lysine|L-Lysin|L-Lysine|lysina|lysine|L-2,6-Diaminocaproic acid|Lysine acid 0 C6H14N2O2 InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1 KDXKERNSBIXSRK-YFKPBYRVSA-N 146.18764 146.10553 NCCCC[C@H](N)C(O)=O Wikipedia:Lysine|PMID:22064742|PMID:16901854|PMID:24064214|Gmelin:364182|PMID:17051348|Reaxys:1722531|PMID:8070089|PMID:22575419|PMID:17979222|PMID:8587651|HMDB:HMDB0000182|YMDB:YMDB00330|KNApSAcK:C00001378|PMID:23722415|PMID:24831709|PMID:10930630|KEGG:D02304|MetaCyc:LYS|ECMDB:ECMDB00182|PMID:22735334|PMID:23167968|Drug_Central:1622|PMID:25108762|DrugBank:DB00123|Beilstein:1722531|PMID:22019452|PMID:23325920|CAS:56-87-1|KEGG:C00047 CHEBI:13135|CHEBI:43950|CHEBI:6264|CHEBI:21351 chebi_ontology owl:Class CHEBI:35443 biolink:NamedThing anthelminthic drug Substance intended to kill parasitic worms (helminths). monarch-merged.owl anthelmintics|anthelmintic|antihelminth|anthelminthics|antihelmintico|vermifuge|anthelminthic chebi_ontology owl:Class CHEBI:17968 biolink:NamedThing butyrate A short-chain fatty acid anion that is the conjugate base of butyric acid, obtained by deprotonation of the carboxy group. monarch-merged.owl butanoate|CH3-[CH2]2-COO(-)|1-propanecarboxylate|n-butanoate|butanate|1-butyrate|n-butyrate|1-butanoate|butyrate|propanecarboxylate|butanoic acid, ion(1-)|propylformate -1 C4H7O2 InChI=1S/C4H8O2/c1-2-3-4(5)6/h2-3H2,1H3,(H,5,6)/p-1 FERIUCNNQQJTOY-UHFFFAOYSA-M 87.09718 87.04515 CCCC([O-])=O Gmelin:324289|Beilstein:3601060|UM-BBD_compID:c0035|MetaCyc:BUTYRIC_ACID|PMID:17190852|PMID:7496326|CAS:461-55-2|Reaxys:3601060|KEGG:C00246 CHEBI:22946|CHEBI:13924 chebi_ontology owl:Class CHEBI:39208 biolink:NamedThing antibiotic insecticide monarch-merged.owl chebi_ontology owl:Class CHEBI:25435 biolink:NamedThing mutagen An agent that increases the frequency of mutations above the normal background level, usually by interacting directly with DNA and causing it damage, including base substitution. monarch-merged.owl mutagenic agent|mutagene|mutagenes|mutageno|mutagens|mutagenos Wikipedia:Mutagen chebi_ontology owl:Class CHEBI:70774 biolink:NamedThing capsaicin receptor antagonist monarch-merged.owl owl:Class CHEBI:36044 biolink:NamedThing antiviral drug A substance used in the prophylaxis or therapy of virus diseases. monarch-merged.owl anti-virus drug|anti-viral drug|antiviral drugs chebi_ontology owl:Class CHEBI:26013 biolink:NamedThing pheromone monarch-merged.owl owl:Class CHEBI:24020 biolink:NamedThing fat-soluble vitamin (role) Vitamins like A, D, E and K that dissolve in fats and are stored in body tissues. Unlike the water-soluble vitamins, these are stored in the body for long periods of time and generally pose a greater risk for toxicity when consumed in excess.|Any vitamin that dissolves in fats and are stored in body tissues. Unlike the water-soluble vitamins, they are stored in the body for long periods of time and generally pose a greater risk for toxicity when consumed in excess. monarch-merged.owl fat-soluble vitamins|fettloesliche Vitamine|fat-soluble vitamin PMID:32057251|PMID:33549284|PMID:31838543|PMID:34045883 chebi_ontology owl:Class CHEBI:53756 biolink:NamedThing HIV-1 reverse transcriptase inhibitor monarch-merged.owl owl:Class CHEBI:41865 biolink:NamedThing sebacic acid An alpha,omega-dicarboxylic acid that is the 1,8-dicarboxy derivative of octane. monarch-merged.owl 1,10-decanedioic acid|Decanedioic acid|SEBACIC ACID|Sebacic acid|1,8-dicarboxyoctane|Sebacinsaeure|decanedioic acid 0 C10H18O4 InChI=1S/C10H18O4/c11-9(12)7-5-3-1-2-4-6-8-10(13)14/h1-8H2,(H,11,12)(H,13,14) CXMXRPHRNRROMY-UHFFFAOYSA-N 202.24752 202.12051 OC(=O)CCCCCCCCC(O)=O PDBeChem:DEC|PMID:22770225|PMID:9439441|KNApSAcK:C00001202|DrugBank:DB07645|LIPID_MAPS_instance:LMFA01170006|Gmelin:102423|KEGG:C08277|CAS:111-20-6|MetaCyc:CPD-3623|Reaxys:1210591|HMDB:HMDB0000792|Beilstein:1210591|Wikipedia:Sebacic_acid CHEBI:41860|CHEBI:9071 chebi_ontology owl:Class CHEBI:35225 biolink:NamedThing buffer monarch-merged.owl owl:Class CHEBI:37208 biolink:NamedThing pinitol monarch-merged.owl owl:Class CHEBI:133959 biolink:NamedThing 4'-methoxyisoflavones monarch-merged.owl owl:Class CHEBI:38756 biolink:NamedThing methoxyisoflavone monarch-merged.owl owl:Class CHEBI:140356 biolink:NamedThing 7-methoxyisoflavones monarch-merged.owl owl:Class CHEBI:55549 biolink:NamedThing dalpatein monarch-merged.owl owl:Class CHEBI:133970 biolink:NamedThing N-retinylidene-N-retinylphosphatidylethanolamine betaine monarch-merged.owl owl:Class CHEBI:35285 biolink:NamedThing iminium betaine monarch-merged.owl owl:Class CHEBI:136517 biolink:NamedThing anaerobilin dizwitterion monarch-merged.owl owl:Class CHEBI:18123 biolink:NamedThing N-methylnicotinate monarch-merged.owl owl:Class CHEBI:62221 biolink:NamedThing 5-methylphenazine-1-carboxylate monarch-merged.owl owl:Class CHEBI:85413 biolink:NamedThing 5-hydroxyectoine zwitterion monarch-merged.owl owl:Class CHEBI:133972 biolink:NamedThing primary nitroalkane monarch-merged.owl owl:Class CHEBI:7587 biolink:NamedThing nitroalkane monarch-merged.owl owl:Class CHEBI:139218 biolink:NamedThing secondary nitroalkane monarch-merged.owl owl:Class CHEBI:17389 biolink:NamedThing 2-monoglyceride monarch-merged.owl owl:Class CHEBI:134138 biolink:NamedThing 2-acylglycerol 16:0 monarch-merged.owl owl:Class CHEBI:134140 biolink:NamedThing 2-acylglycerol 18:0 monarch-merged.owl owl:Class CHEBI:134141 biolink:NamedThing 2-acylglycerol 18:1 monarch-merged.owl owl:Class CHEBI:134142 biolink:NamedThing 2-acylglycerol 18:2 monarch-merged.owl owl:Class CHEBI:134144 biolink:NamedThing 2-acylglycerol 20:4 monarch-merged.owl owl:Class CHEBI:137187 biolink:NamedThing 15(S)-HPETE 2-glyceryl ester monarch-merged.owl owl:Class CHEBI:18063 biolink:NamedThing 2-O-acyl-3-O-beta-D-galactosyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:85238 biolink:NamedThing 15-deoxy-Delta(12,14)-prostaglandin J2-2-glyceryl ester monarch-merged.owl owl:Class CHEBI:15555 biolink:NamedThing prostaglandin D2 monarch-merged.owl owl:Class CHEBI:15557 biolink:NamedThing 15-dehydro-prostaglandin D2 monarch-merged.owl owl:Class CHEBI:27696 biolink:NamedThing prostaglandin D1 monarch-merged.owl owl:Class CHEBI:34939 biolink:NamedThing prostaglandin D3 monarch-merged.owl owl:Class CHEBI:57262 biolink:NamedThing 3-sn-phosphatidyl-L-serine(1-) monarch-merged.owl owl:Class CHEBI:57896 biolink:NamedThing diisopropyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:58436 biolink:NamedThing phosphatidyl-L-serine(1-) monarch-merged.owl owl:Class CHEBI:58907 biolink:NamedThing precursor Z(2-) monarch-merged.owl owl:Class CHEBI:59539 biolink:NamedThing coenzyme alpha-F420-3(5-) monarch-merged.owl owl:Class CHEBI:59648 biolink:NamedThing precursor Z(1-) monarch-merged.owl owl:Class CHEBI:64379 biolink:NamedThing 1-acyl-sn-glycero-3-phosphoserine(1-) monarch-merged.owl owl:Class CHEBI:64771 biolink:NamedThing 1-acyl-sn-glycero-3-phospho-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:133985 biolink:NamedThing 13(R)-HPODE(1-) monarch-merged.owl owl:Class CHEBI:57466 biolink:NamedThing 13(S)-HPODE(1-) monarch-merged.owl owl:Class CHEBI:133986 biolink:NamedThing (9Z,11E,13R,15Z)-13-hydroperoxyoctadecatrienoic acid monarch-merged.owl owl:Class CHEBI:133988 biolink:NamedThing (9Z,11R,12Z,15Z)-11-hydroperoxyoctadecatrienoic acid monarch-merged.owl owl:Class CHEBI:136686 biolink:NamedThing (9Z,11S,12Z,15Z)-11-hydroperoxyoctadecatrienoic acid monarch-merged.owl owl:Class CHEBI:63238 biolink:NamedThing (10E,12Z,15Z)-9-hydroperoxyoctadeca-10,12,15-trienoic acid monarch-merged.owl owl:Class CHEBI:76236 biolink:NamedThing (R)-2-hydroperoxy-alpha-linolenic acid monarch-merged.owl owl:Class CHEBI:84180 biolink:NamedThing 10-HPO(6,8,12)TrE monarch-merged.owl owl:Class CHEBI:133987 biolink:NamedThing (9Z,11E,13R,15Z)-13-hydroperoxyoctadecatrienoate monarch-merged.owl owl:Class CHEBI:133989 biolink:NamedThing (9Z,11R,12Z,15Z)-11-hydroperoxyoctadecatrienoate monarch-merged.owl owl:Class CHEBI:134110 biolink:NamedThing (9Z,11S,12Z,15Z)-11-hydroperoxyoctadecatrienoate monarch-merged.owl owl:Class CHEBI:58757 biolink:NamedThing (9Z,11E,13S,15Z)-13-hydroperoxyoctadeca-9,11,15-trienoate monarch-merged.owl owl:Class CHEBI:63239 biolink:NamedThing (10E,12Z,15Z)-9-hydroperoxyoctadeca-10,12,15-trienoate monarch-merged.owl owl:Class CHEBI:83342 biolink:NamedThing 10-HPO(6,8,12)TrE(1-) monarch-merged.owl owl:Class CHEBI:133994 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61901 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:133998 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61906 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:133999 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61915 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:134000 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61919 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:134002 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61921 biolink:NamedThing alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:134003 biolink:NamedThing alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61925 biolink:NamedThing alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:134004 biolink:NamedThing alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61927 biolink:NamedThing alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:134005 biolink:NamedThing alpha-D-Glc-(1->2)-alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:61932 biolink:NamedThing alpha-D-Glc-(1->2)-alpha-D-Glc-(1->3)-alpha-D-Glc-(1->3)-alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc(PP-Dol) monarch-merged.owl owl:Class CHEBI:134017 biolink:NamedThing 11a-hydroxytetracycline monarch-merged.owl owl:Class CHEBI:134655 biolink:NamedThing desmethylanhydrotetracycline monarch-merged.owl owl:Class CHEBI:137049 biolink:NamedThing 16alpha,17alpha-dihydroxypregnenolone monarch-merged.owl owl:Class CHEBI:15808 biolink:NamedThing 12-dehydrotetracycline monarch-merged.owl owl:Class CHEBI:17146 biolink:NamedThing anhydrotetracycline monarch-merged.owl owl:Class CHEBI:17252 biolink:NamedThing 17alpha-hydroxyprogesterone A 17alpha-hydroxy steroid that is the 17alpha-hydroxy derivative of progesterone. monarch-merged.owl 17-hydroxyprogesterone|17alpha-hydroxyprogesterone|17alpha-Hydroxy-4-pregnene-3,20-dione|17alpha-Hydroxyprogesterone|17-hydroxypregn-4-ene-3,20-dione|hydroxyprogesteronum|hidroxiprogesterona|hydroxyprogesterone|Pregn-4-ene-3,20-dione-17-ol|delta(4)-Pregnene-17alpha-ol-3,20-dione|17alpha-Hydroxy-progesterone|17-Hydroxypregn-4-en-3,20-dione 0 C21H30O3 InChI=1S/C21H30O3/c1-13(22)21(24)11-8-18-16-5-4-14-12-15(23)6-9-19(14,2)17(16)7-10-20(18,21)3/h12,16-18,24H,4-11H2,1-3H3/t16-,17+,18+,19+,20+,21+/m1/s1 DBPWSSGDRRHUNT-CEGNMAFCSA-N 330.46110 330.21949 [H][C@@]12CCC3=CC(=O)CC[C@]3(C)[C@@]1([H])CC[C@@]1(C)[C@@]2([H])CC[C@]1(O)C(C)=O PMID:518278|PMID:4339047|PMID:4678212|Wikipedia:Hydroxyprogesterone|Beilstein:2062088|PMID:15863951|PMID:19390483|KEGG:C01176|CAS:68-96-2|PMID:18573861|PMID:17096820|PMID:4343782|PMID:6632812|MetaCyc:17-ALPHA-HYDROXYPROGESTERONE|PMID:12915667|PMID:4678211|PMID:72488|KEGG:D08052|PMID:5061166|PMID:4628727|PMID:17128559|PMID:8496956|PMID:1167988|PMID:14999215|PMID:5098538|PMID:5571099|PMID:5065810|Reaxys:2062088|LIPID_MAPS_instance:LMST02030161|PMID:9931518|PMID:17066953 CHEBI:790|CHEBI:11339|CHEBI:11340|CHEBI:19173 chebi_ontology owl:Class CHEBI:17598 biolink:NamedThing phorbol 12,13-dibutanoate monarch-merged.owl owl:Class CHEBI:17609 biolink:NamedThing cortisol 21-acetate monarch-merged.owl owl:Class CHEBI:17727 biolink:NamedThing phorbol 13-butanoate monarch-merged.owl owl:Class CHEBI:18093 biolink:NamedThing 17,21-dihydroxy-5beta-pregnane-3,11,20-trione monarch-merged.owl owl:Class CHEBI:18298 biolink:NamedThing 3-hydroxy-2-methyl-3-phytyl-2,3-dihydro-1,4-naphthoquinone monarch-merged.owl owl:Class CHEBI:27902 biolink:NamedThing tetracycline A broad-spectrum polyketide antibiotic produced by the Streptomyces genus of actinobacteria. monarch-merged.owl Achromycin|tetracycline|(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-2-naphthacenecarboxamide|Abramycin|(4S,4aS,5aS,6S,12aS)-4-(dimethylamino)-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide|Tetracyclin|tetracyclinum|Tetracycline|TETRACYCLINE|Tetrazyklin|Deschlorobiomycin|Anhydrotetracycline|Liquamycin|Tsiklomitsin owl:Class CHEBI:28324 biolink:NamedThing 11-deoxycortisol monarch-merged.owl owl:Class CHEBI:28408 biolink:NamedThing 4-de(dimethylamino)-4-oxoanhydrotetracycline monarch-merged.owl owl:Class CHEBI:28461 biolink:NamedThing 4-amino-4-de(dimethylamino)anhydrotetracycline monarch-merged.owl owl:Class CHEBI:28697 biolink:NamedThing 21-deoxycortisol A deoxycortisol that is 17xi-pregn-4-ene-3,20-dione substituted by a beta-hydroxy group at position 11 and an alpha-hydroxy group at position 17. It is a marker of virilizing adrenal hyperplasia caused by 21-hydroxylase deficiency. monarch-merged.owl pregn-4-ene-11beta,17alpha-diol-3,20-dione|11beta,17alpha-dihydroxypregn-4-ene-3,20-dione|11beta,17alpha-dihydroxyprogesterone|11beta,17-dihydroxyprogesterone|11beta,17-dihydroxypregn-4-ene-3,20-dione|21-deoxycortisol|4-pregnene-11beta,17alpha-diol-3,20-dione|11-beta,17-alpha-dihydroxypregn-4-ene-3,20-dione|(1R,3aS,3bS,9aR,9bS,10S,11aS)-1-acetyl-1,10-dihydroxy-9a,11a-dimethyl-1,2,3,3a,3b,4,5,8,9,9a,9b,10,11,11a-tetradecahydro-7H-cyclopenta[a]phenanthren-7-one 0 C21H30O4 InChI=1S/C21H30O4/c1-12(22)21(25)9-7-16-15-5-4-13-10-14(23)6-8-19(13,2)18(15)17(24)11-20(16,21)3/h10,15-18,24-25H,4-9,11H2,1-3H3/t15-,16-,17-,18+,19-,20-,21-/m0/s1 LCZBQMKVFQNSJR-UJPCIWJBSA-N 346.467 346.21441 C1C(C=C2[C@](C1)([C@@]3([C@@](CC2)([C@]4([C@](C[C@@H]3O)([C@](CC4)(C(C)=O)O)C)[H])[H])[H])C)=O PMID:4372245|PMID:2827419|PMID:8055790|KEGG:C05497|LIPID_MAPS_instance:LMST02030195|PMID:10731638|PMID:28774496|CAS:641-77-0|PMID:28499151|Wikipedia:21-Deoxycortisol|PMID:3258316|FooDB:FDB023283|HMDB:HMDB0004030|PMID:2986404|PMID:16551734|PMID:2614011|PMID:2531882|PMID:28610588|PMID:845476|PMID:6310249|PMID:8753277|PMID:17456574|PMID:31450227|PMID:2555382 CHEBI:19801|CHEBI:1297 chebi_ontology owl:Class CHEBI:37537 biolink:NamedThing phorbol 13-acetate 12-myristate monarch-merged.owl owl:Class CHEBI:47805 biolink:NamedThing 25-hydroxy-24-oxocalciol monarch-merged.owl owl:Class CHEBI:47812 biolink:NamedThing (1S)-1,25-dihydroxy-24-oxocalciol monarch-merged.owl owl:Class CHEBI:50246 biolink:NamedThing 1-hydroxylimonen-2-one monarch-merged.owl owl:Class CHEBI:50694 biolink:NamedThing minocycline monarch-merged.owl owl:Class CHEBI:8382 biolink:NamedThing prednisone monarch-merged.owl owl:Class CHEBI:9470 biolink:NamedThing tetracenomycin C monarch-merged.owl owl:Class CHEBI:134368 biolink:NamedThing 5a,11a-dehydrooxytetracycline monarch-merged.owl owl:Class CHEBI:27701 biolink:NamedThing oxytetracycline monarch-merged.owl owl:Class CHEBI:81646 biolink:NamedThing Pretetramid monarch-merged.owl owl:Class CHEBI:77673 biolink:NamedThing N-acyl-L-phenylalanine monarch-merged.owl owl:Class CHEBI:134027 biolink:NamedThing 1,2-bis(octadec-9-enoyl)phosphatidic acid monarch-merged.owl owl:Class CHEBI:75357 biolink:NamedThing 1-oleoyl-2-(11Z)-octadecenoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:77248 biolink:NamedThing 1-stearoyl-2-linoleoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:134045 biolink:NamedThing polychlorinated dibenzodioxines and related compounds monarch-merged.owl owl:Class CHEBI:17792 biolink:NamedThing organohalogen compound A compound containing at least one carbon-halogen bond (where X is a halogen atom). monarch-merged.owl organic halide|organohalogen compounds|organic halides|RX 0 RX ** KEGG:C01322|MetaCyc:Organohalogen-Compounds CHEBI:36684|CHEBI:13444|CHEBI:8767 chebi_ontology owl:Class CHEBI:24472 biolink:NamedThing halohydrocarbon A compound derived from a hydrocarbon by replacing a hydrogen atom with a halogen atom. monarch-merged.owl halohydrocarbons|halogenated hydrocarbons chebi_ontology owl:Class CHEBI:37141 biolink:NamedThing organobromine compound A compound containing at least one carbon-bromine bond. monarch-merged.owl organobromide compound|organobromide|organobromides|bromoorganic compound|organobromine compounds|organobromide compounds|an organobromine molecule|organobromine compound 0 BrR 79.904 78.91834 *Br MetaCyc:Bromide|Wikipedia:Organobromine_compound chebi_ontology owl:Class CHEBI:37142 biolink:NamedThing organoiodine compound An organoiodine compound is a compound containing at least one carbon-iodine bond. monarch-merged.owl organoiodine compounds|organoiodine compound 0 IR 126.904 126.90447 *I Wikipedia:Organoiodine_compound|MetaCyc:Organoiodine-Compounds chebi_ontology owl:Class CHEBI:90772 biolink:NamedThing 12(S)-HpEPE(1-) monarch-merged.owl owl:Class CHEBI:134072 biolink:NamedThing N-hexadecanoyl-1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:62537 biolink:NamedThing N-acylphosphatidylethanolamine(1-) monarch-merged.owl owl:Class CHEBI:137429 biolink:NamedThing N-oleoyl-1,2-diacyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:78085 biolink:NamedThing N-hexadecanoylphosphatidylethanolamine(1-) monarch-merged.owl owl:Class CHEBI:78097 biolink:NamedThing N-palmitoyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85277 biolink:NamedThing N-arachidonoyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85291 biolink:NamedThing N,1,2-trioleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85292 biolink:NamedThing N-stearoyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85293 biolink:NamedThing N-myristoyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85294 biolink:NamedThing N-lauroyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85295 biolink:NamedThing N-capryl-1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85296 biolink:NamedThing N-capryloyl-1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85297 biolink:NamedThing N-caproyl-1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85298 biolink:NamedThing N-butyryl-1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85334 biolink:NamedThing N,1-dipalmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:134079 biolink:NamedThing (5Z,8R,9E,11Z,14Z,17Z)-8-hydroperoxyicosapentaenoate monarch-merged.owl owl:Class CHEBI:134085 biolink:NamedThing 3-hydroxyanthocyanidin cation monarch-merged.owl owl:Class CHEBI:140277 biolink:NamedThing 5-hydroxyanthocyanidin monarch-merged.owl owl:Class CHEBI:134086 biolink:NamedThing (2R,3R)-flavan-3-ol monarch-merged.owl owl:Class CHEBI:134088 biolink:NamedThing (2S,3R)-flavan-3-ol monarch-merged.owl owl:Class CHEBI:134089 biolink:NamedThing (2S,3S)-flavan-3-ol monarch-merged.owl owl:Class CHEBI:15605 biolink:NamedThing (2S)-flavan-4-ol monarch-merged.owl owl:Class CHEBI:23053 biolink:NamedThing catechin monarch-merged.owl owl:Class CHEBI:60835 biolink:NamedThing leucoanthocyanidin monarch-merged.owl owl:Class CHEBI:72584 biolink:NamedThing pentahydroxyflavan monarch-merged.owl owl:Class CHEBI:134087 biolink:NamedThing 3-hydroxyanthocyanidin betaine monarch-merged.owl owl:Class CHEBI:47916 biolink:NamedThing flavonoid monarch-merged.owl owl:Class CHEBI:24043 biolink:NamedThing flavones monarch-merged.owl owl:Class CHEBI:38672 biolink:NamedThing flavans monarch-merged.owl owl:Class CHEBI:38695 biolink:NamedThing anthocyanidin monarch-merged.owl owl:Class CHEBI:60951 biolink:NamedThing flavonoid phytoalexin monarch-merged.owl owl:Class CHEBI:71968 biolink:NamedThing hydroxyflavonoid monarch-merged.owl owl:Class CHEBI:51978 biolink:NamedThing oxonium betaine monarch-merged.owl owl:Class CHEBI:144776 biolink:NamedThing delphinidin 3-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:144778 biolink:NamedThing pelargonidin 3-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:57503 biolink:NamedThing anthocyanidin 3,5-di-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:57830 biolink:NamedThing cyanidin 3-O-rutinoside 5-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:58546 biolink:NamedThing cyanidin 3-O-rutinoside betaine monarch-merged.owl owl:Class CHEBI:58640 biolink:NamedThing pelargonidin 3-O-(6-O-caffeoyl-beta-D-glucoside) 5-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:60001 biolink:NamedThing pelargonidin 3-O-rutinoside 5-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:60048 biolink:NamedThing pelargonidin 3-O-rutinoside betaine monarch-merged.owl owl:Class CHEBI:61317 biolink:NamedThing cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:71511 biolink:NamedThing cyanin betaine monarch-merged.owl owl:Class CHEBI:71513 biolink:NamedThing cyanidin 3,7-di-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:71515 biolink:NamedThing cyanidin 3-O-beta-D-galactoside betaine monarch-merged.owl owl:Class CHEBI:71519 biolink:NamedThing anthocyanidin 3-O-[2-O-(4-coumaroyl)-alpha-L-rhamnosyl-(1->6)-beta-D-glucoside] betaine monarch-merged.owl owl:Class CHEBI:77641 biolink:NamedThing anthocyanidin 3,5-diglucoside betaine monarch-merged.owl owl:Class CHEBI:77771 biolink:NamedThing cyanidin 3-O-(6-O-glucosyl-2-O-xylosylgalactoside) betaine monarch-merged.owl owl:Class CHEBI:77838 biolink:NamedThing delphinidin 3-O-beta-D-glucoside-5-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:77844 biolink:NamedThing delphinidin 3,3',5-tri-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:77901 biolink:NamedThing anthocyanidin 3-O-[2-O-(4-coumaroyl)-alpha-L-rhamnosyl-(1->6)-beta-D-glucoside] 5-O-beta-D-glucoside betaine monarch-merged.owl owl:Class CHEBI:77943 biolink:NamedThing anthocyanidin 3-glucoside 5-[(6-O-4-hydroxycinnamoyl)glucoside] betaine monarch-merged.owl owl:Class CHEBI:77944 biolink:NamedThing anthocyanidin 5-O-beta-D-glucoside 3-O-beta-D-sambubioside betaine monarch-merged.owl owl:Class CHEBI:77945 biolink:NamedThing anthocyanidin 3-O-beta-D-sambubioside betaine monarch-merged.owl owl:Class CHEBI:77946 biolink:NamedThing anthocyanidin 3-O-sophoroside betaine monarch-merged.owl owl:Class CHEBI:84163 biolink:NamedThing anthocyanidin 3-O-(6-O-malonyl-beta-D-glucoside) betaine monarch-merged.owl owl:Class CHEBI:134093 biolink:NamedThing (acetamidomethyl)phosphonate(1-) monarch-merged.owl owl:Class CHEBI:134098 biolink:NamedThing (S)-(1-aminoethyl)phosphonate monarch-merged.owl owl:Class CHEBI:134099 biolink:NamedThing [(S)-1-acetamidoethyl]phosphonate(1-) monarch-merged.owl owl:Class CHEBI:58383 biolink:NamedThing phosphonoacetaldehyde(1-) monarch-merged.owl owl:Class CHEBI:59458 biolink:NamedThing N-[(R)-4-phosphonatopantothenoyl]-L-cysteinate(3-) monarch-merged.owl owl:Class CHEBI:60032 biolink:NamedThing undecaprenyldiphosphonato-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-L-lysyl-D-alanyl-D-alanine(3-) monarch-merged.owl owl:Class CHEBI:60033 biolink:NamedThing lipid II(3-) monarch-merged.owl owl:Class CHEBI:60991 biolink:NamedThing 2-hydroxyethylphosphonic acid(1-) monarch-merged.owl owl:Class CHEBI:61387 biolink:NamedThing undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine(4-) monarch-merged.owl owl:Class CHEBI:61388 biolink:NamedThing undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine(4-) monarch-merged.owl owl:Class CHEBI:62247 biolink:NamedThing (1R,2S)-epoxypropylphosphonate(1-) monarch-merged.owl owl:Class CHEBI:68684 biolink:NamedThing methylphosphonate(1-) monarch-merged.owl owl:Class CHEBI:71199 biolink:NamedThing hydroxymethylphosphonate(1-) monarch-merged.owl owl:Class CHEBI:134102 biolink:NamedThing (R)-2-amino-4-oxopentanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:134125 biolink:NamedThing (R)-NADHX monarch-merged.owl owl:Class CHEBI:26916 biolink:NamedThing tetrahydronicotinamide adenine dinucleotide monarch-merged.owl owl:Class CHEBI:15644 biolink:NamedThing (S)-NADHX(1+) monarch-merged.owl owl:Class CHEBI:44236 biolink:NamedThing (S)-NADHX monarch-merged.owl owl:Class CHEBI:64084 biolink:NamedThing (S)-NADPHX monarch-merged.owl owl:Class CHEBI:64085 biolink:NamedThing (R)-NADPHX monarch-merged.owl owl:Class CHEBI:15374 biolink:NamedThing 4a-hydroxytetrahydrobiopterin monarch-merged.owl owl:Class CHEBI:16408 biolink:NamedThing vomilenine monarch-merged.owl owl:Class CHEBI:17372 biolink:NamedThing 1,2-dihydrovomilenine monarch-merged.owl owl:Class CHEBI:28462 biolink:NamedThing ajmaline monarch-merged.owl owl:Class CHEBI:37674 biolink:NamedThing 17-O-acetylajmaline monarch-merged.owl owl:Class CHEBI:64287 biolink:NamedThing 17-hydroxylupanine monarch-merged.owl owl:Class CHEBI:85418 biolink:NamedThing 7-demethylmitomycin B monarch-merged.owl owl:Class CHEBI:134127 biolink:NamedThing 1-acylglycerol 16:0 monarch-merged.owl owl:Class CHEBI:35759 biolink:NamedThing 1-monoglyceride monarch-merged.owl owl:Class CHEBI:134129 biolink:NamedThing 1-acylglycerol 18:0 monarch-merged.owl owl:Class CHEBI:134130 biolink:NamedThing 1-acylglycerol 18:1 monarch-merged.owl owl:Class CHEBI:134131 biolink:NamedThing 1-acylglycerol 18:2 monarch-merged.owl owl:Class CHEBI:134133 biolink:NamedThing 1-acylglycerol 20:4 monarch-merged.owl owl:Class CHEBI:64683 biolink:NamedThing 1-acyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:64760 biolink:NamedThing 3-acyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:75539 biolink:NamedThing 1-monolauroylglycerol monarch-merged.owl owl:Class CHEBI:75547 biolink:NamedThing 1-monodecanoylglycerol monarch-merged.owl owl:Class CHEBI:75562 biolink:NamedThing 1-monomyristoylglycerol monarch-merged.owl owl:Class CHEBI:75610 biolink:NamedThing 1-alpha-linolenoylglycerol monarch-merged.owl owl:Class CHEBI:85241 biolink:NamedThing 1-monooctanoylglycerol monarch-merged.owl owl:Class CHEBI:87255 biolink:NamedThing monoacylglycerol 18:0 monarch-merged.owl owl:Class CHEBI:87256 biolink:NamedThing monoacylglycerol 18:1 monarch-merged.owl owl:Class CHEBI:75937 biolink:NamedThing monooleoylglycerol monarch-merged.owl owl:Class CHEBI:87257 biolink:NamedThing monoacylglycerol 18:2 monarch-merged.owl owl:Class CHEBI:87251 biolink:NamedThing monoacylglycerol 16:0 monarch-merged.owl owl:Class CHEBI:75542 biolink:NamedThing 1-hexadecanoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:134156 biolink:NamedThing N-acylethanolamine 16:1 monarch-merged.owl owl:Class CHEBI:134157 biolink:NamedThing N-acylethanolamine 18:0 monarch-merged.owl owl:Class CHEBI:134159 biolink:NamedThing N-acylethanolamine 18:2 monarch-merged.owl owl:Class CHEBI:134161 biolink:NamedThing N-acylethanolamine 20:4 monarch-merged.owl owl:Class CHEBI:134162 biolink:NamedThing N-acylethanolamine 20:5 monarch-merged.owl owl:Class CHEBI:134165 biolink:NamedThing N-acylethanolamine 22:6 monarch-merged.owl owl:Class CHEBI:167118 biolink:NamedThing oxidized N-(fatty acyl)-ethanolamine monarch-merged.owl owl:Class CHEBI:53081 biolink:NamedThing prostaglandin F2alpha 1-ethanolamide monarch-merged.owl owl:Class CHEBI:53082 biolink:NamedThing prostaglandin H2 1-ethanolamide monarch-merged.owl owl:Class CHEBI:85282 biolink:NamedThing N-(monounsaturated fatty acyl)ethanolamine monarch-merged.owl owl:Class CHEBI:134158 biolink:NamedThing N-acylethanolamine 18:1 monarch-merged.owl owl:Class CHEBI:71465 biolink:NamedThing palmitoleoyl ethanolamide monarch-merged.owl owl:Class CHEBI:134176 biolink:NamedThing 2,3-bis-O-(geranylgeranyl)-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:57613 biolink:NamedThing phosphatidylethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:60260 biolink:NamedThing 1-(alk-1-enyl)-2-acyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:77578 biolink:NamedThing monoalkyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:78198 biolink:NamedThing 1-(alk-1-enyl)-2-acyl-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:78199 biolink:NamedThing alkylacylglycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:78201 biolink:NamedThing monoacylglycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:78203 biolink:NamedThing 1-(alk-1-enyl)-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:78204 biolink:NamedThing monoalkylglycerophosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:134179 biolink:NamedThing volatile organic compound Any organic compound having an initial boiling point less than or equal to 250 degreeC (482 degreeF) measured at a standard atmospheric pressure of 101.3 kPa. monarch-merged.owl VOCs|VOC|volatile organic compounds Wikipedia:Volatile_organic_compound chebi_ontology owl:Class CHEBI:25701 biolink:NamedThing organic oxide An oxide in which the oxygen atom is bonded to a carbon atom. monarch-merged.owl organic oxides chebi_ontology owl:Class CHEBI:33832 biolink:NamedThing organic cyclic compound Any organic molecule that consists of atoms connected in the form of a ring. monarch-merged.owl organic cyclic compounds chebi_ontology owl:Class CHEBI:35716 biolink:NamedThing C-nitro compound monarch-merged.owl owl:Class CHEBI:36587 biolink:NamedThing organic oxo compound Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element. monarch-merged.owl oxo compounds|organic oxo compounds chebi_ontology owl:Class CHEBI:51151 biolink:NamedThing dipolar compound An organic molecule that is electrically neutral carrying a positive and a negative charge in one of its major canonical descriptions. In most dipolar compounds the charges are delocalized; however the term is also applied to species where this is not the case. monarch-merged.owl dipolar compounds chebi_ontology owl:Class CHEBI:73474 biolink:NamedThing acetylenic compound monarch-merged.owl owl:Class CHEBI:134185 biolink:NamedThing (S)-all-trans-4-hydroxyretinoate monarch-merged.owl owl:Class CHEBI:23953 biolink:NamedThing erythromycins monarch-merged.owl owl:Class CHEBI:3349 biolink:NamedThing candicidin D monarch-merged.owl owl:Class CHEBI:39221 biolink:NamedThing macrolide pesticide monarch-merged.owl chebi_ontology owl:Class CHEBI:48080 biolink:NamedThing brefeldin A monarch-merged.owl owl:Class CHEBI:63276 biolink:NamedThing mycinamicin monarch-merged.owl owl:Class CHEBI:134196 biolink:NamedThing (2R,5Z)-4-methyl-5-[2-(phosphonooxy)ethylidene]-2,5-dihydro-1,3-thiazole-2-carboxylic acid monarch-merged.owl owl:Class CHEBI:134198 biolink:NamedThing (R)-tembetarine monarch-merged.owl owl:Class CHEBI:136682 biolink:NamedThing tembetarine monarch-merged.owl owl:Class CHEBI:134205 biolink:NamedThing 2-methyl-D-serine monarch-merged.owl owl:Class CHEBI:134206 biolink:NamedThing 2-methylserine monarch-merged.owl owl:Class CHEBI:24658 biolink:NamedThing hydroxy-L-arginine monarch-merged.owl owl:Class CHEBI:24659 biolink:NamedThing hydroxy-L-glutamic acid monarch-merged.owl owl:Class CHEBI:24661 biolink:NamedThing hydroxy-L-lysine monarch-merged.owl owl:Class CHEBI:24741 biolink:NamedThing hydroxyproline A proline derivative that is proline substituted by at least one hydroxy group. monarch-merged.owl chebi_ontology owl:Class CHEBI:47830 biolink:NamedThing hydroxyarginine monarch-merged.owl owl:Class CHEBI:50418 biolink:NamedThing 4-hydroxyphenylglycine monarch-merged.owl owl:Class CHEBI:61130 biolink:NamedThing hydroxy-L-isoleucine monarch-merged.owl owl:Class CHEBI:61139 biolink:NamedThing hydroxy-L-valine monarch-merged.owl owl:Class CHEBI:84194 biolink:NamedThing hydroxytryptophan monarch-merged.owl owl:Class CHEBI:86498 biolink:NamedThing hydroxylysine monarch-merged.owl owl:Class CHEBI:86499 biolink:NamedThing monohydroxyproline A hydroxy-amino acid in which the amino acid specified is proline. A "closed" class. monarch-merged.owl 0 C5H9NO3 131.12990 131.05824 chebi_ontology owl:Class CHEBI:134213 biolink:NamedThing (S)-1,2,9,10-tetramethoxy-6-methylaporphine(1+) monarch-merged.owl owl:Class CHEBI:134217 biolink:NamedThing N-methylbulbocapnine(1+) monarch-merged.owl owl:Class CHEBI:6641 biolink:NamedThing (S)-magnoflorine monarch-merged.owl owl:Class CHEBI:137983 biolink:NamedThing methylated tertiary amine monarch-merged.owl owl:Class CHEBI:15710 biolink:NamedThing betaine aldehyde monarch-merged.owl owl:Class CHEBI:15786 biolink:NamedThing 3-hydroxy-N(6),N(6),N(6)-trimethyl-L-lysine monarch-merged.owl owl:Class CHEBI:15870 biolink:NamedThing betaine aldehyde hydrate monarch-merged.owl owl:Class CHEBI:15949 biolink:NamedThing diphthamide monarch-merged.owl owl:Class CHEBI:15960 biolink:NamedThing O-acetylcarnitinium monarch-merged.owl owl:Class CHEBI:16512 biolink:NamedThing (S)-N-methylcanadine monarch-merged.owl owl:Class CHEBI:16758 biolink:NamedThing 3-dehydrocarnitinium monarch-merged.owl owl:Class CHEBI:18054 biolink:NamedThing diphthine monarch-merged.owl owl:Class CHEBI:1941 biolink:NamedThing 4-(trimethylammonio)butanoic acid monarch-merged.owl owl:Class CHEBI:23217 biolink:NamedThing cholines A quaternary ammonium ion based on the choline ion and its substituted derivatives thereof. monarch-merged.owl chebi_ontology owl:Class CHEBI:3424 biolink:NamedThing carnitinium A quaternary ammonium ion that is the the conjugate acid of carnitine. monarch-merged.owl 3-hydroxy-4-(trimethylammonio)butanoic acid|Carnitine|3-carboxy-2-hydroxy-N,N,N-trimethylpropan-1-aminium +1 C7H16NO3 InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3/p+1 PHIQHXFUZVPYII-UHFFFAOYSA-O 162.20688 162.11247 C[N+](C)(C)CC(O)CC(O)=O KEGG:C00487|CAS:406-76-8|CAS:461-06-3 chebi_ontology owl:Class CHEBI:41139 biolink:NamedThing N,N,N-trimethylglycinium monarch-merged.owl owl:Class CHEBI:44813 biolink:NamedThing N,N-dimethyl-L-prolinium monarch-merged.owl owl:Class CHEBI:48604 biolink:NamedThing carnitinamide monarch-merged.owl owl:Class CHEBI:48867 biolink:NamedThing 4-(trimethylammonio)but-2-enoic acid monarch-merged.owl owl:Class CHEBI:49183 biolink:NamedThing phosphatidylcholine(1+) monarch-merged.owl owl:Class CHEBI:52859 biolink:NamedThing choline hydrogen sulfate monarch-merged.owl owl:Class CHEBI:52897 biolink:NamedThing sphingosylphosphocholine acid monarch-merged.owl owl:Class CHEBI:57580 biolink:NamedThing diphthamide zwitterion monarch-merged.owl owl:Class CHEBI:62490 biolink:NamedThing sphingomyelin d18:1(1+) monarch-merged.owl owl:Class CHEBI:67049 biolink:NamedThing N(alpha),N(alpha),N(alpha)-trimethyl-L-histidinium(1+) monarch-merged.owl owl:Class CHEBI:82771 biolink:NamedThing N(4)-bis(aminopropyl)spermidine(5+) monarch-merged.owl owl:Class CHEBI:83553 biolink:NamedThing N(4)-bis(aminopropyl)spermidine(1+) monarch-merged.owl owl:Class CHEBI:85171 biolink:NamedThing sphingoid-1-phosphocholine(1+) monarch-merged.owl owl:Class CHEBI:134214 biolink:NamedThing L-xylo-3-hexulose monarch-merged.owl owl:Class CHEBI:24973 biolink:NamedThing ketohexose Any hexose containing a single ketone group. monarch-merged.owl ketohexose|ketohexoses chebi_ontology owl:Class CHEBI:24965 biolink:NamedThing deoxyketohexose monarch-merged.owl owl:Class CHEBI:27453 biolink:NamedThing 3-keto-beta-D-galactose monarch-merged.owl owl:Class CHEBI:27922 biolink:NamedThing sorbose monarch-merged.owl owl:Class CHEBI:28757 biolink:NamedThing fructose A ketohexose that is an isomer of glucose. monarch-merged.owl fructose|Fruktose|Fructose|arabino-Hexulose|Fru|Fruchtzucker|arabino-hex-2-ulose Wikipedia:Fructose|DrugBank:DB04173|CAS:30237-26-4|KEGG:C01496 CHEBI:24104|CHEBI:5172|CHEBI:24110 chebi_ontology owl:Class CHEBI:33951 biolink:NamedThing psicose monarch-merged.owl owl:Class CHEBI:33954 biolink:NamedThing tagatose monarch-merged.owl owl:Class CHEBI:16325 biolink:NamedThing lithocholic acid monarch-merged.owl owl:Class CHEBI:16755 biolink:NamedThing chenodeoxycholic acid monarch-merged.owl owl:Class CHEBI:28834 biolink:NamedThing deoxycholic acid monarch-merged.owl owl:Class CHEBI:52023 biolink:NamedThing hyodeoxycholic acid monarch-merged.owl owl:Class CHEBI:81244 biolink:NamedThing hyocholic acid monarch-merged.owl owl:Class CHEBI:81253 biolink:NamedThing isolithocholic acid monarch-merged.owl owl:Class CHEBI:9907 biolink:NamedThing ursodeoxycholic acid monarch-merged.owl owl:Class CHEBI:27114 biolink:NamedThing trihydroxy-5beta-cholanic acid monarch-merged.owl owl:Class CHEBI:36240 biolink:NamedThing 3alpha,7alpha,12beta-trihydroxy-5beta-cholanic acid monarch-merged.owl owl:Class CHEBI:88105 biolink:NamedThing 3beta,7alpha,12alpha-trihydroxy-5beta-cholan-24-oic acid monarch-merged.owl owl:Class CHEBI:3098 biolink:NamedThing bile acid Any member of a group of hydroxy-5beta-cholanic acids occuring in bile, where they are present as the sodium salts of their amides with glycine or taurine. In mammals bile acids almost invariably have 5beta-configuration. monarch-merged.owl 5beta-bile acids|Bile acid|bile acids|Gallensaeure|Bile salt|Gallensaeuren|5beta-bile acid KEGG:C01558 chebi_ontology owl:Class CHEBI:88097 biolink:NamedThing 7alpha-hydroxy-3-oxo-5beta-cholan-24-oic acid monarch-merged.owl owl:Class CHEBI:88098 biolink:NamedThing 3beta,12alpha-dihydroxy-5beta-cholan-24-oic acid monarch-merged.owl owl:Class CHEBI:88102 biolink:NamedThing 3beta,7alpha-dihydroxy-5beta-cholan-24-oic acid monarch-merged.owl owl:Class CHEBI:88104 biolink:NamedThing 12alpha-hydroxy-3-oxo-5beta-cholan-24-oic acid monarch-merged.owl owl:Class CHEBI:88108 biolink:NamedThing 7alpha,12alpha-dihydroxy-3-oxo-5beta-cholan-24-oic acid monarch-merged.owl owl:Class CHEBI:36844 biolink:NamedThing 7-hydroxy steroid monarch-merged.owl owl:Class CHEBI:35349 biolink:NamedThing 7beta-hydroxy steroid monarch-merged.owl owl:Class CHEBI:36843 biolink:NamedThing 7alpha-hydroxy steroid monarch-merged.owl owl:Class CHEBI:36849 biolink:NamedThing 6-hydroxy steroid monarch-merged.owl owl:Class CHEBI:36850 biolink:NamedThing 6alpha-hydroxy steroid monarch-merged.owl owl:Class CHEBI:36851 biolink:NamedThing 6beta-hydroxy steroid monarch-merged.owl owl:Class CHEBI:140521 biolink:NamedThing 13-methyltetradecenal monarch-merged.owl owl:Class CHEBI:24578 biolink:NamedThing hexenal monarch-merged.owl owl:Class CHEBI:61725 biolink:NamedThing oct-2-enal monarch-merged.owl owl:Class CHEBI:70995 biolink:NamedThing trans-13-methyltetradec-2-enal monarch-merged.owl owl:Class CHEBI:134225 biolink:NamedThing 1,4-benzosemiquinones monarch-merged.owl owl:Class CHEBI:22730 biolink:NamedThing benzosemiquinones monarch-merged.owl owl:Class CHEBI:17977 biolink:NamedThing 1,4-benzosemiquinone monarch-merged.owl owl:Class CHEBI:134241 biolink:NamedThing phosphatidylethanolamine 40:6 monarch-merged.owl owl:Class CHEBI:16038 biolink:NamedThing phosphatidylethanolamine monarch-merged.owl owl:Class CHEBI:134243 biolink:NamedThing phosphatidylethanolamine 40:5 monarch-merged.owl owl:Class CHEBI:134493 biolink:NamedThing phosphatidylethanolamine 40:1 monarch-merged.owl owl:Class CHEBI:134502 biolink:NamedThing phosphatidylethanolamine 40:0 monarch-merged.owl owl:Class CHEBI:141588 biolink:NamedThing phosphatidylethanolamine 36:2 monarch-merged.owl owl:Class CHEBI:145747 biolink:NamedThing phosphatidylethanolamine 42:5 monarch-merged.owl owl:Class CHEBI:145855 biolink:NamedThing phosphatidylethanolamine 44:8 monarch-merged.owl owl:Class CHEBI:155834 biolink:NamedThing phosphatidylethanolamine 34:1 monarch-merged.owl owl:Class CHEBI:155835 biolink:NamedThing phosphatidylethanolamine 34:2 monarch-merged.owl owl:Class CHEBI:15958 biolink:NamedThing phosphatidyl-N-methylethanolamine monarch-merged.owl owl:Class CHEBI:17152 biolink:NamedThing phosphatidyl-N,N-dimethylethanolamine monarch-merged.owl owl:Class CHEBI:34083 biolink:NamedThing {1-hexadecanoyl-2-[(Z)-octadec-9-enoyl]-sn-glycero-3-phospho}ethanolamine monarch-merged.owl owl:Class CHEBI:64674 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:134246 biolink:NamedThing (R)-2-hydroxyglutaryl-CoA monarch-merged.owl owl:Class CHEBI:134247 biolink:NamedThing (11R)-11-hydroperoxylinoleic acid monarch-merged.owl owl:Class CHEBI:78013 biolink:NamedThing linoleic acid hydroperoxide monarch-merged.owl owl:Class CHEBI:15657 biolink:NamedThing (11S)-11-hydroperoxylinoleic acid monarch-merged.owl owl:Class CHEBI:25235 biolink:NamedThing monomethoxybenzene Compounds containing a benzene skeleton substituted with one methoxy group. monarch-merged.owl monomethoxybenzenes chebi_ontology owl:Class CHEBI:16579 biolink:NamedThing anisole monarch-merged.owl owl:Class CHEBI:19333 biolink:NamedThing 2,4,6-trichloroanisole monarch-merged.owl owl:Class CHEBI:2716 biolink:NamedThing anethole monarch-merged.owl owl:Class CHEBI:48726 biolink:NamedThing nitroanisoles monarch-merged.owl owl:Class CHEBI:134256 biolink:NamedThing lipid A (E. coli) monarch-merged.owl owl:Class CHEBI:47040 biolink:NamedThing lipid A monarch-merged.owl owl:Class CHEBI:134258 biolink:NamedThing beta-L-Ara4N-lipid A (E. coli) monarch-merged.owl owl:Class CHEBI:140089 biolink:NamedThing all-trans-retinyl dodecanoate monarch-merged.owl owl:Class CHEBI:142953 biolink:NamedThing didodecanoylglycerol monarch-merged.owl owl:Class CHEBI:27963 biolink:NamedThing (Kdo)2-lipid A (E. coli) monarch-merged.owl owl:Class CHEBI:47762 biolink:NamedThing phosphoethanolamine-Kdo2-lipid A monarch-merged.owl owl:Class CHEBI:61523 biolink:NamedThing (heptosyl)2-(KDO)2-lipid A monarch-merged.owl owl:Class CHEBI:61528 biolink:NamedThing heptosyl-(KDO)2-lipid A monarch-merged.owl owl:Class CHEBI:62016 biolink:NamedThing glucosyl-(heptosyl)2-(KDO)2-lipid A monarch-merged.owl owl:Class CHEBI:62017 biolink:NamedThing glucosyl-heptosyl-4-phosphoheptosyl-(KDO)2-lipid A monarch-merged.owl owl:Class CHEBI:62198 biolink:NamedThing lipid A-core monarch-merged.owl owl:Class CHEBI:62199 biolink:NamedThing galactosyl-(glucosyl)3-(heptosyl)3-(KDO)2-lipid A-bisphosphate monarch-merged.owl owl:Class CHEBI:62200 biolink:NamedThing galactosyl-(glucosyl)2-(heptosyl)3-(KDO)2-lipid A-bisphosphate monarch-merged.owl owl:Class CHEBI:62201 biolink:NamedThing galactosyl-glucosyl-heptosyl-(phosphoheptosyl)2-(KDO)2-lipid A monarch-merged.owl owl:Class CHEBI:62202 biolink:NamedThing glucosyl-heptosyl-(phosphoheptosyl)2-(KDO)2-lipid A monarch-merged.owl owl:Class CHEBI:62203 biolink:NamedThing glucosyl-(heptosyl)2-4-phosphoheptosyl-(KDO)2-lipid A monarch-merged.owl owl:Class CHEBI:62840 biolink:NamedThing 1-lauroyl-sn-glycerol 3-phosphate monarch-merged.owl owl:Class CHEBI:64877 biolink:NamedThing 1-acyl-2-dodecanoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:65211 biolink:NamedThing 1,2-dilauroyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:71409 biolink:NamedThing (beta-L-Ara4N)2-(KDO)2-lipid A monarch-merged.owl owl:Class CHEBI:73054 biolink:NamedThing O-dodecanoylcarnitine monarch-merged.owl owl:Class CHEBI:74967 biolink:NamedThing 1-lauroyl-2-arachidonoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75017 biolink:NamedThing 1-lauroyl-2-palmitoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75018 biolink:NamedThing 1-palmitoyl-2-lauroyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75378 biolink:NamedThing 1-palmitoyl-2-lauroyl-sn-glycero-3-phospho-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:75463 biolink:NamedThing 1-lauroyl-2-oleoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:75528 biolink:NamedThing 3-lauroyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:75533 biolink:NamedThing 3-lauroyl-2-oleoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:77086 biolink:NamedThing O-lauroyl-L-carnitine monarch-merged.owl owl:Class CHEBI:77121 biolink:NamedThing 1-oleoyl-2-lauroyl-sn-glycero-3-phospho-(1'-sn-glycerol) monarch-merged.owl owl:Class CHEBI:77122 biolink:NamedThing 1-palmitoyl-2-lauroyl-sn-glycero-3-phospho-(1'-sn-glycerol) monarch-merged.owl owl:Class CHEBI:77389 biolink:NamedThing trilaurin monarch-merged.owl owl:Class CHEBI:77681 biolink:NamedThing 1-palmityl-2-acetyl-3-lauroyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:77685 biolink:NamedThing 1,2-dioleoyl-3-lauroyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:85382 biolink:NamedThing 1-heptadecanoyl-2-lauroyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:85630 biolink:NamedThing (Kdo)2-lipid A 1-diphosphate (E. coli) monarch-merged.owl owl:Class CHEBI:87242 biolink:NamedThing palmitoyllipid A monarch-merged.owl owl:Class CHEBI:87339 biolink:NamedThing lipid A 1-(2-aminoethyl diphosphate) monarch-merged.owl owl:Class CHEBI:87420 biolink:NamedThing lipid A 4'-(2-aminoethyl diphosphate) monarch-merged.owl owl:Class CHEBI:138676 biolink:NamedThing 11-cis-retinyl tetradecanoate monarch-merged.owl owl:Class CHEBI:138691 biolink:NamedThing 9-cis-retinyl tetradecanoate monarch-merged.owl owl:Class CHEBI:138704 biolink:NamedThing 13-cis-retinyl tetradecanoate monarch-merged.owl owl:Class CHEBI:138718 biolink:NamedThing all-trans-retinyl tetradecanoate monarch-merged.owl owl:Class CHEBI:45240 biolink:NamedThing 1,2-di-O-myristoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:61556 biolink:NamedThing (KDO)2-(palmitoleoyl-myristoyl)-lipid A monarch-merged.owl owl:Class CHEBI:62833 biolink:NamedThing 1-myristoyl-sn-glycerol 3-phosphate monarch-merged.owl owl:Class CHEBI:64873 biolink:NamedThing 1-acyl-2-tetradecanoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:73061 biolink:NamedThing O-tetradecanoylcarnitine monarch-merged.owl owl:Class CHEBI:73092 biolink:NamedThing 1-tetradecanoyl-sn-glycero-3-phospho-(1'-sn-glycerol) monarch-merged.owl owl:Class CHEBI:73208 biolink:NamedThing 2-hexadecanoyl-1-tetradecanoyl-sn-glycero-3-phospho-(1'-sn-glycerol) monarch-merged.owl owl:Class CHEBI:73264 biolink:NamedThing 1-hexadecanoyl-2-tetradecanoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:74930 biolink:NamedThing 1-oleoyl-2-myristoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:74943 biolink:NamedThing 1-myristoyl-2-oleoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:75062 biolink:NamedThing 1-myristoyl-2-palmitoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75304 biolink:NamedThing 1-palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75465 biolink:NamedThing 1-myristoyl-2-oleoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:75540 biolink:NamedThing 2-oleoyl-3-myristoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:77391 biolink:NamedThing trimyristin monarch-merged.owl owl:Class CHEBI:77392 biolink:NamedThing 2,3-dimyristoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:77678 biolink:NamedThing 1-palmityl-2-acetyl-3-myristoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:77684 biolink:NamedThing 1,2-dioleoyl-3-myristoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:78814 biolink:NamedThing 1-oleoyl-2-myristoyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:82840 biolink:NamedThing 1-oleoyl-2-myristoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:84266 biolink:NamedThing 1,2-ditetradecanoyl-sn-glycerol-3-phosphate monarch-merged.owl owl:Class CHEBI:84299 biolink:NamedThing 1-myristoyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:84300 biolink:NamedThing 1-myristoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:85237 biolink:NamedThing 1-myristoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85383 biolink:NamedThing 1-heptadecanoyl-2-myristoyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:86094 biolink:NamedThing 1-tetradecanoyl-2-[(9Z,12Z)-octadecadienoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:86102 biolink:NamedThing 1-tetradecanoyl-2-[(5Z,8Z,11Z,14Z)-eicosatetraenoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:86162 biolink:NamedThing 1-tetradecanoyl-2-[(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:87424 biolink:NamedThing lipid A 1,4'-bis(2-aminoethyl diphosphate) monarch-merged.owl owl:Class CHEBI:134257 biolink:NamedThing lipid A(4-) (E. coli) monarch-merged.owl owl:Class CHEBI:47763 biolink:NamedThing beta-L-Ara4N-lipid A monarch-merged.owl owl:Class CHEBI:134259 biolink:NamedThing beta-L-Ara4N-lipid A(2-) (E. coli) monarch-merged.owl owl:Class CHEBI:134262 biolink:NamedThing L-arginyl-L-amino acid monarch-merged.owl owl:Class CHEBI:46761 biolink:NamedThing dipeptide Any molecule that contains two amino-acid residues connected by peptide linkages. monarch-merged.owl dipeptides|Dipeptid|Dipeptide KEGG:C00107 CHEBI:23835|CHEBI:4634 chebi_ontology owl:Class CHEBI:134409 biolink:NamedThing N(alpha)-acetyl-L-methionyl-L-asparagine monarch-merged.owl owl:Class CHEBI:134471 biolink:NamedThing N-acetyl-L-methionyl-L-glutamine monarch-merged.owl owl:Class CHEBI:134477 biolink:NamedThing N-acetyl-L-methionyl-L-leucine monarch-merged.owl owl:Class CHEBI:134478 biolink:NamedThing N-acetyl-L-methionyl-L-isoleucine monarch-merged.owl owl:Class CHEBI:134481 biolink:NamedThing N-acetyl-L-methionyl-L-phenylalanine monarch-merged.owl owl:Class CHEBI:134482 biolink:NamedThing N-acetyl-L-methionyl-L-tyrosine monarch-merged.owl owl:Class CHEBI:134484 biolink:NamedThing N-acetyl-L-methionyl-L-tryptophan monarch-merged.owl owl:Class CHEBI:134489 biolink:NamedThing N-acetyl-L-methionyl-L-alanine monarch-merged.owl owl:Class CHEBI:134491 biolink:NamedThing N-acetyl-L-methionyl-L-serine monarch-merged.owl owl:Class CHEBI:134492 biolink:NamedThing N-acetyl-L-methionyl-L-valine monarch-merged.owl owl:Class CHEBI:134495 biolink:NamedThing N-acetyl-L-methionyl-L-threonine monarch-merged.owl owl:Class CHEBI:137669 biolink:NamedThing S-[(Z)-N-hydroxy-2-phenylethanimidoyl]-L-cysteinylglycine monarch-merged.owl owl:Class CHEBI:138934 biolink:NamedThing N-(4-oxoglutaryl)-L-cysteinylglycine monarch-merged.owl owl:Class CHEBI:15727 biolink:NamedThing carnosine A dipeptide that is the N-(beta-alanyl) derivative of L-histidine. monarch-merged.owl (2S)-2-(3-aminopropanamido)-3-(1H-imidazol-4-yl)propanoic acid|N-beta-alanyl-L-histidine|N-2-M|Karnozin|L-carnosine|N(alpha)-(beta-alanyl)-L-histidine|ignotine|beta-alanyl-L-histidine|Karnozzn|Nalpha-(beta-alanyl)-L-histidine|N-(3-aminopropanoyl)-L-histidine|Carnosine 0 C9H14N4O3 InChI=1S/C9H14N4O3/c10-2-1-8(14)13-7(9(15)16)3-6-4-11-5-12-6/h4-5,7H,1-3,10H2,(H,11,12)(H,13,14)(H,15,16)/t7-/m0/s1 CQOVPNPJLQNMDC-ZETCQYMHSA-N 226.236 226.10659 NCCC(=O)N[C@@H](CC1=CNC=N1)C(O)=O PMID:11976203|KNApSAcK:C00052222|PMID:24398899|PMID:33586561|PMID:18773880|PMID:11707898|PMID:16287364|PMID:2674258|PMID:15941308|PMID:17443912|PMID:33704575|PDBeChem:8V0|PMID:9928418|PMID:11911459|PMID:29463897|PMID:15878720|CAS:305-84-0|PMID:8689392|PMID:31951767|PMID:10951108|PMID:10841274|PMID:16181134|PMID:17031479|Wikipedia:Carnosine|PMID:9029640|KEGG:C00386|PMID:11470131|PMID:16804013|PMID:34067694|Chemspider:388363|PMID:18076890|Reaxys:87671|PMID:1735411|PMID:12139778|DrugBank:DB11695|PMID:19309105|HMDB:HMDB0000033|PMID:10951105|PMID:15853927|PMID:16162015|PMID:16406688|PMID:18019400|PMID:20017611 CHEBI:3428|CHEBI:13948|CHEBI:23040 chebi_ontology owl:Class CHEBI:15857 biolink:NamedThing 5-L-glutamyl amino acid monarch-merged.owl owl:Class CHEBI:16576 biolink:NamedThing D-alanyl-D-alanine monarch-merged.owl owl:Class CHEBI:17201 biolink:NamedThing glycylglycine monarch-merged.owl owl:Class CHEBI:17537 biolink:NamedThing Tyr-Arg monarch-merged.owl owl:Class CHEBI:24323 biolink:NamedThing glutamyl-L-amino acid monarch-merged.owl owl:Class CHEBI:27491 biolink:NamedThing leukotriene F4 monarch-merged.owl owl:Class CHEBI:28496 biolink:NamedThing N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine monarch-merged.owl owl:Class CHEBI:28666 biolink:NamedThing leukotriene D4 monarch-merged.owl owl:Class CHEBI:4047 biolink:NamedThing L-cysteinylglycine monarch-merged.owl owl:Class CHEBI:50621 biolink:NamedThing gamma-glutamylalanine monarch-merged.owl owl:Class CHEBI:5385 biolink:NamedThing gliotoxin monarch-merged.owl owl:Class CHEBI:55435 biolink:NamedThing beta-Asp-Arg monarch-merged.owl owl:Class CHEBI:60467 biolink:NamedThing D-alanyl-D-serine monarch-merged.owl owl:Class CHEBI:61565 biolink:NamedThing L-alanyl-L-glutamic acid monarch-merged.owl owl:Class CHEBI:61566 biolink:NamedThing L-alanyl-D-glutamic acid monarch-merged.owl owl:Class CHEBI:61695 biolink:NamedThing L-prolylglycine monarch-merged.owl owl:Class CHEBI:64692 biolink:NamedThing N(6)-[(3R)-3-methyl-D-ornithyl]-L-lysine monarch-merged.owl owl:Class CHEBI:65061 biolink:NamedThing 2,5-diketopiperazines monarch-merged.owl owl:Class CHEBI:70744 biolink:NamedThing Gly-Pro monarch-merged.owl owl:Class CHEBI:71683 biolink:NamedThing D-gamma-glutamyl-D-glutamic acid monarch-merged.owl owl:Class CHEBI:73610 biolink:NamedThing Met-Ala monarch-merged.owl owl:Class CHEBI:73688 biolink:NamedThing Ac-Asp-Glu monarch-merged.owl owl:Class CHEBI:73757 biolink:NamedThing Ala-Gly monarch-merged.owl owl:Class CHEBI:73762 biolink:NamedThing Ala-Thr monarch-merged.owl owl:Class CHEBI:73770 biolink:NamedThing Ala-Leu monarch-merged.owl owl:Class CHEBI:73771 biolink:NamedThing Ala-His monarch-merged.owl owl:Class CHEBI:73788 biolink:NamedThing Ala-Gln monarch-merged.owl owl:Class CHEBI:73801 biolink:NamedThing Gly-Glu monarch-merged.owl owl:Class CHEBI:73803 biolink:NamedThing Ala-Asp monarch-merged.owl owl:Class CHEBI:73888 biolink:NamedThing Gly-Asn monarch-merged.owl owl:Class CHEBI:73898 biolink:NamedThing Gly-Gln monarch-merged.owl owl:Class CHEBI:74120 biolink:NamedThing Gly-Met monarch-merged.owl owl:Class CHEBI:83290 biolink:NamedThing N(alpha)-(L-gamma-glutamyl)-hercynyl-L-cysteine sulfoxide monarch-merged.owl owl:Class CHEBI:85331 biolink:NamedThing dapdiamide monarch-merged.owl owl:Class CHEBI:134268 biolink:NamedThing (S)-mandelamide monarch-merged.owl owl:Class CHEBI:17352 biolink:NamedThing (R)-mandelamide monarch-merged.owl owl:Class CHEBI:23697 biolink:NamedThing dichlorobenzene monarch-merged.owl owl:Class CHEBI:23696 biolink:NamedThing dichloroaniline monarch-merged.owl owl:Class CHEBI:23698 biolink:NamedThing dichlorobenzoyl-CoA monarch-merged.owl owl:Class CHEBI:23699 biolink:NamedThing dichlorocatechol monarch-merged.owl owl:Class CHEBI:23700 biolink:NamedThing dichlorohydroquinone monarch-merged.owl owl:Class CHEBI:23702 biolink:NamedThing dichlorophenol monarch-merged.owl owl:Class CHEBI:28618 biolink:NamedThing 1,4-dichlorobenzene monarch-merged.owl owl:Class CHEBI:28854 biolink:NamedThing 2,4-D monarch-merged.owl owl:Class CHEBI:30748 biolink:NamedThing 2,4-dichlorobenzoic acid monarch-merged.owl owl:Class CHEBI:35290 biolink:NamedThing 1,2-dichlorobenzene monarch-merged.owl owl:Class CHEBI:87197 biolink:NamedThing dichlorophenyl dicarboximide fungicide monarch-merged.owl owl:Class CHEBI:134275 biolink:NamedThing keto-L-tagatose monarch-merged.owl owl:Class CHEBI:37462 biolink:NamedThing L-tagatose monarch-merged.owl owl:Class CHEBI:35282 biolink:NamedThing sulfonium betaine Neutral molecules having charge-separated forms with an sulfonium atom which bears no hydrogen atoms and that is not adjacent to the anionic atom. monarch-merged.owl sulfonium betaines chebi_ontology owl:Class CHEBI:16457 biolink:NamedThing S,S-dimethyl-beta-propiothetin monarch-merged.owl owl:Class CHEBI:16471 biolink:NamedThing (dimethylsulfonio)acetate monarch-merged.owl owl:Class CHEBI:67040 biolink:NamedThing S-adenosyl-L-methioninate A sulfonium betaine that is a conjugate base of S-adenosyl-L-methionine obtained by the deprotonation of the carboxy group. monarch-merged.owl S-Adenosylmethionine|[(3S)-3-amino-3-carboxylatopropyl](5'-deoxyadenosin-5'-yl)(methyl)sulfonioacetate|SAM|AdoMet 0 C15H22N6O5S InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/t7-,8+,10+,11+,14+,27?/m0/s1 MEFKEPWMEQBLKI-AIRLBKTGSA-N 398.43700 398.13724 C[S+](CC[C@H](N)C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12 Drug_Central:2414|PMID:25628954|KNApSAcK:C00007347|CAS:29908-03-0|KEGG:C00019|PDBeChem:SAM chebi_ontology owl:Class CHEBI:67050 biolink:NamedThing S-methyl-L-methioninate monarch-merged.owl owl:Class CHEBI:16160 biolink:NamedThing O-succinyl-L-homoserine monarch-merged.owl owl:Class CHEBI:79274 biolink:NamedThing 1-hexadecyl-2-succinyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:88145 biolink:NamedThing 2''-O-succinyl-ADP-D-ribose monarch-merged.owl owl:Class CHEBI:84135 biolink:NamedThing L-serine derivative monarch-merged.owl owl:Class CHEBI:139400 biolink:NamedThing N-acyllysophosphatidyl-L-serine monarch-merged.owl owl:Class CHEBI:17455 biolink:NamedThing N-(2,3-dihydroxybenzoyl)-L-serine monarch-merged.owl owl:Class CHEBI:21957 biolink:NamedThing O-glycosyl-L-serine monarch-merged.owl owl:Class CHEBI:21977 biolink:NamedThing O-(N-acetylglucosamine-1-phosphoryl)-L-serine monarch-merged.owl owl:Class CHEBI:22194 biolink:NamedThing acetyl-L-serine monarch-merged.owl owl:Class CHEBI:71591 biolink:NamedThing 2,3-bis-O-(geranylgeranyl)-sn-glycero-3-phospho-L-serine monarch-merged.owl owl:Class CHEBI:75075 biolink:NamedThing 2,3-bis-O-phytanyl-sn-glycero-3-phospho-L-serine monarch-merged.owl owl:Class CHEBI:134298 biolink:NamedThing phosphatidylcholine 12:0 monarch-merged.owl owl:Class CHEBI:57643 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:134299 biolink:NamedThing phosphatidylcholine 13:0 monarch-merged.owl owl:Class CHEBI:137403 biolink:NamedThing 1-hexanoyl-2-acyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:137852 biolink:NamedThing phosphatidylcholine 14:0 monarch-merged.owl owl:Class CHEBI:138211 biolink:NamedThing 1-octadecanoyl-2-pentanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:167148 biolink:NamedThing 1-linoleoyl-2-acyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:57982 biolink:NamedThing 1-acyl-2-[(S)-12-hydroxyoleoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:58293 biolink:NamedThing 1-acyl-2-oleoyl-sn-glycero-3-phosphocholine betaine monarch-merged.owl owl:Class CHEBI:60000 biolink:NamedThing 1-acyl-2-linoleoyl-sn-glycero-3-phosphocholine betaine monarch-merged.owl owl:Class CHEBI:60657 biolink:NamedThing 1,2-di-O-arachidonoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:61817 biolink:NamedThing 1-palmitoyl-2-azelaoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:61822 biolink:NamedThing 2-O-glutaroyl-1-O-palmitoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:64423 biolink:NamedThing phosphatidylcholine 34:4 monarch-merged.owl owl:Class CHEBI:64424 biolink:NamedThing phosphatidylcholine 34:3 monarch-merged.owl owl:Class CHEBI:64433 biolink:NamedThing phosphatidylcholine 36:2 monarch-merged.owl owl:Class CHEBI:64504 biolink:NamedThing phosphatidylcholine 36:5 monarch-merged.owl owl:Class CHEBI:64516 biolink:NamedThing phosphatidylcholine 34:2 monarch-merged.owl owl:Class CHEBI:64517 biolink:NamedThing phosphatidylcholine 34:1 monarch-merged.owl owl:Class CHEBI:64519 biolink:NamedThing phosphatidylcholine 38:6 monarch-merged.owl owl:Class CHEBI:64520 biolink:NamedThing phosphatidylcholine 36:4 monarch-merged.owl owl:Class CHEBI:64525 biolink:NamedThing phosphatidylcholine 38:5 monarch-merged.owl owl:Class CHEBI:64526 biolink:NamedThing phosphatidylcholine 38:4 monarch-merged.owl owl:Class CHEBI:65294 biolink:NamedThing phosphatidylcholine 28:0 monarch-merged.owl owl:Class CHEBI:65303 biolink:NamedThing phosphatidylcholine 30:0 monarch-merged.owl owl:Class CHEBI:66848 biolink:NamedThing phosphatidylcholine 32:2 monarch-merged.owl owl:Class CHEBI:66849 biolink:NamedThing phosphatidylcholine 32:1 monarch-merged.owl owl:Class CHEBI:66850 biolink:NamedThing phosphatidylcholine 32:0 monarch-merged.owl owl:Class CHEBI:66855 biolink:NamedThing phosphatidylcholine 34:0 monarch-merged.owl owl:Class CHEBI:66856 biolink:NamedThing phosphatidylcholine 36:6 monarch-merged.owl owl:Class CHEBI:66857 biolink:NamedThing phosphatidylcholine 36:1 monarch-merged.owl owl:Class CHEBI:66858 biolink:NamedThing phosphatidylcholine 36:0 monarch-merged.owl owl:Class CHEBI:66862 biolink:NamedThing phosphatidylcholine 40:4 monarch-merged.owl owl:Class CHEBI:72423 biolink:NamedThing phosphatidylcholine 26:0 monarch-merged.owl owl:Class CHEBI:72427 biolink:NamedThing phosphatidylcholine 37:4 monarch-merged.owl owl:Class CHEBI:75063 biolink:NamedThing 1-acyl-2-arachidonoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75219 biolink:NamedThing 1-palmitoyl-2-acetyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75220 biolink:NamedThing 1-stearoyl-2-acetyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75240 biolink:NamedThing 1-acyl-2-palmitoleoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75279 biolink:NamedThing 1-acyl-2-hexadecanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75301 biolink:NamedThing 1-palmitoyl-2-hexanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:77694 biolink:NamedThing 1-arachidonoyl-2-palmitoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:77753 biolink:NamedThing 1-palmitoyl-2-[(10E)-9-hydroperoxyoctadecenoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:77831 biolink:NamedThing 1-palmitoyl-2-propionyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:77832 biolink:NamedThing 1-palmitoyl-2-butanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:77833 biolink:NamedThing 1-palmitoyl-2-valeroyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:78022 biolink:NamedThing 1-stearoyl-2-(alpha-linolenoyl)-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:78228 biolink:NamedThing 1,2-dioctanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:78421 biolink:NamedThing 1-oleoyl-2-acyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:82943 biolink:NamedThing 1-palmitoyl-2-icosanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:85564 biolink:NamedThing phosphatidylcholine 24:0 monarch-merged.owl owl:Class CHEBI:86048 biolink:NamedThing 1-acyl-2-[(R)-12-hydroxyoleoyl]-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:134311 biolink:NamedThing D-altritol monarch-merged.owl owl:Class CHEBI:24583 biolink:NamedThing hexitol monarch-merged.owl hexitol|hexitols chebi_ontology owl:Class CHEBI:16813 biolink:NamedThing galactitol An optically inactive hexitol having meso-configuration. monarch-merged.owl L-galactitol|Dulcose|Dulcitol|meso-galactitol|Galactitol|(2R,3S,4R,5S)-hexane-1,2,3,4,5,6-hexol|D-Dulcitol|galactitol|Melampyrin|D-galactitol|Melampyrit|Euonymit 0 C6H14O6 InChI=1S/C6H14O6/c7-1-3(9)5(11)6(12)4(10)2-8/h3-12H,1-2H2/t3-,4+,5+,6- FBPFZTCFMRRESA-GUCUJZIJSA-N 182.17180 182.07904 OC[C@H](O)[C@@H](O)[C@@H](O)[C@H](O)CO HMDB:HMDB0000107|Gmelin:83163|PMID:22654107|Beilstein:1721903|PMID:22628202|CAS:608-66-2|Wikipedia:Galactitol|PMID:16901854|PMID:17336832|KNApSAcK:C00001160|PMID:21501963|PMID:17979222|PMID:23830453|Reaxys:1721903|KEGG:C01697|PMID:24643482|PMID:22155165|PMID:16664750 CHEBI:5251|CHEBI:24139|CHEBI:53575|CHEBI:14286 chebi_ontology owl:Class CHEBI:24766 biolink:NamedThing iditol monarch-merged.owl owl:Class CHEBI:29864 biolink:NamedThing mannitol monarch-merged.owl owl:Class CHEBI:30911 biolink:NamedThing glucitol monarch-merged.owl gulitol|rel-(2R,3R,4R,5S)-hexane-1,2,3,4,5,6-hexol|glucitol|Sorbitol 0 C6H14O6 182.172 182.07904 Beilstein:1721909|Gmelin:83165|Wikipedia:Sorbitol CHEBI:9201|CHEBI:26724|CHEBI:15093|CHEBI:33796|CHEBI:26726|CHEBI:33795 chebi_ontology owl:Class CHEBI:134341 biolink:NamedThing 2-(3-methylbutanoyl)-4-prenylphloroglucinol monarch-merged.owl owl:Class CHEBI:134342 biolink:NamedThing 2-isobutyryl-4-prenylphloroglucinol monarch-merged.owl owl:Class CHEBI:138055 biolink:NamedThing 2,4,5-trihydroxyphenylacetic acid monarch-merged.owl owl:Class CHEBI:16164 biolink:NamedThing pyrogallol monarch-merged.owl owl:Class CHEBI:16204 biolink:NamedThing phloroglucinol monarch-merged.owl owl:Class CHEBI:16971 biolink:NamedThing benzene-1,2,4-triol monarch-merged.owl owl:Class CHEBI:28233 biolink:NamedThing 2,4,6-trihydroxybenzophenone monarch-merged.owl owl:Class CHEBI:37576 biolink:NamedThing gallate ester monarch-merged.owl owl:Class CHEBI:134340 biolink:NamedThing 2-(2-methylbutanoyl)-4-prenylphloroglucinol monarch-merged.owl owl:Class CHEBI:134343 biolink:NamedThing lupulone(1-) monarch-merged.owl owl:Class CHEBI:134349 biolink:NamedThing colupulone(1-) monarch-merged.owl owl:Class CHEBI:134352 biolink:NamedThing adlupulone(1-) monarch-merged.owl owl:Class CHEBI:134345 biolink:NamedThing deoxyhumulone monarch-merged.owl owl:Class CHEBI:134353 biolink:NamedThing deoxycohumulone monarch-merged.owl owl:Class CHEBI:134354 biolink:NamedThing deoxyadlupulone monarch-merged.owl owl:Class CHEBI:24995 biolink:NamedThing lactam Cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. monarch-merged.owl lactam|lactams|Laktame|Laktam chebi_ontology owl:Class CHEBI:16737 biolink:NamedThing creatinine A lactam obtained by formal cyclocondensation of creatine. It is a metabolite of creatine. monarch-merged.owl creatinina|creatinine|Creatine anhydride|1-Methylglycocyamidine|Creatinine|Kreatinin|2-amino-1,5-dihydro-1-methyl-4H-Imidazol-4-one|2-imino-1-methylimidazolidin-4-one|1-Methylhydantoin-2-imide|1-methylglycocyamidine|2-Amino-1-methylimidazolin-4-one 0 C4H7N3O InChI=1S/C4H7N3O/c1-7-2-3(8)6-4(7)5/h2H2,1H3,(H2,5,6,8) DDRJAANPRJIHGJ-UHFFFAOYSA-N 113.11800 113.05891 CN1CC(=O)NC1=N Wikipedia:Creatinine|KEGG:C00791|PMID:22207347|PMID:19968328|PMID:22331238|PMID:22166252|KEGG:D03600|PMID:22047975|PMID:21775764|PMID:22349552|PMID:18182718|PMID:22459582|PMID:22390548|PMID:22441184|PMID:22223530|PMID:22121923|PMID:22432114|PMID:11981083|MetaCyc:CREATININE|PMID:17422601|PMID:17190852|PMID:19236048|Reaxys:112064|HMDB:HMDB0000562|PMID:22338083|PMID:19715855|PMID:22498455|CAS:60-27-5|PMID:11256540|PMID:22212624 CHEBI:23406|CHEBI:14029|CHEBI:3910 chebi_ontology owl:Class CHEBI:22565 biolink:NamedThing ansamycin monarch-merged.owl owl:Class CHEBI:23000 biolink:NamedThing caprolactams monarch-merged.owl owl:Class CHEBI:23445 biolink:NamedThing cyclic hydroxamic acid monarch-merged.owl owl:Class CHEBI:23527 biolink:NamedThing cytochalasin B monarch-merged.owl owl:Class CHEBI:35627 biolink:NamedThing beta-lactam A lactam in which the amide bond is contained within a four-membered ring, which includes the amide nitrogen and the carbonyl carbon. monarch-merged.owl beta-lactams|beta-Lactam|a beta-lactam owl:Class CHEBI:63559 biolink:NamedThing HBOA monarch-merged.owl owl:Class CHEBI:64372 biolink:NamedThing emericellamide monarch-merged.owl owl:Class CHEBI:64648 biolink:NamedThing enniatin monarch-merged.owl owl:Class CHEBI:74222 biolink:NamedThing gamma-lactam A lactam in which the amide bond is contained within a five-membered ring, which includes the amide nitrogen and the carbonyl carbon. monarch-merged.owl gamma-lactams chebi_ontology owl:Class CHEBI:77727 biolink:NamedThing delta-lactam monarch-merged.owl owl:Class CHEBI:140440 biolink:NamedThing hapalindole H monarch-merged.owl owl:Class CHEBI:140441 biolink:NamedThing 12-epi-hapalindole U monarch-merged.owl owl:Class CHEBI:140442 biolink:NamedThing 12-epi-fischerindole U monarch-merged.owl owl:Class CHEBI:18328 biolink:NamedThing 13-hydroxylupanine monarch-merged.owl owl:Class CHEBI:18360 biolink:NamedThing 13-(2-methylcrotonoyloxy)lupanine monarch-merged.owl owl:Class CHEBI:38303 biolink:NamedThing azirinopyrroloindole monarch-merged.owl owl:Class CHEBI:38484 biolink:NamedThing ergoline monarch-merged.owl owl:Class CHEBI:39252 biolink:NamedThing pyridophenoxazine monarch-merged.owl owl:Class CHEBI:50307 biolink:NamedThing furonaphthodioxole monarch-merged.owl owl:Class CHEBI:52994 biolink:NamedThing precursor Z monarch-merged.owl owl:Class CHEBI:64515 biolink:NamedThing pyranoxanthene monarch-merged.owl owl:Class CHEBI:64695 biolink:NamedThing pyripyropene A monarch-merged.owl owl:Class CHEBI:71596 biolink:NamedThing mycocyclosin monarch-merged.owl owl:Class CHEBI:71652 biolink:NamedThing anthrafuran monarch-merged.owl owl:Class CHEBI:85419 biolink:NamedThing 7-demethylmitomycin A monarch-merged.owl owl:Class CHEBI:87531 biolink:NamedThing prenyl-FMNH2 monarch-merged.owl owl:Class CHEBI:38958 biolink:NamedThing indole alkaloid An alkaloid containing an indole skeleton. monarch-merged.owl Indole alkaloid|indole alkaloids KEGG:C06073|Wikipedia:Indole_alkaloid CHEBI:24795|CHEBI:5901 chebi_ontology owl:Class CHEBI:141616 biolink:NamedThing hapalindole-type alkaloid monarch-merged.owl owl:Class CHEBI:16765 biolink:NamedThing tryptamine An aminoalkylindole consisting of indole having a 2-aminoethyl group at the 3-position. monarch-merged.owl 1H-indole-3-ethanamine|2-(1H-indol-3-yl)ethanamine|2-(3-indolyl)ethylamine|Tryptamine|3-(2-Aminoethyl)indole|2-(1H-INDOL-3-YL)ETHANAMINE 0 C10H12N2 InChI=1S/C10H12N2/c11-6-5-8-7-12-10-4-2-1-3-9(8)10/h1-4,7,12H,5-6,11H2 APJYDQYYACXCRM-UHFFFAOYSA-N 160.21570 160.10005 NCCc1c[nH]c2ccccc12 KEGG:C00398|Wikipedia:Tryptamine|Beilstein:125513|Gmelin:603448|PDBeChem:TSS|PMID:24558969|PMID:24345948|MetaCyc:TRYPTAMINE|DrugBank:DB08653|PMID:22770225|HMDB:HMDB0000303|CAS:61-54-1|PMID:16126914|KNApSAcK:C00001434|Reaxys:125513 CHEBI:15274|CHEBI:9767|CHEBI:46157|CHEBI:27161 chebi_ontology owl:Class CHEBI:17096 biolink:NamedThing strictosidine aglycone monarch-merged.owl owl:Class CHEBI:17294 biolink:NamedThing 4,21-dehydrogeissoschizine monarch-merged.owl owl:Class CHEBI:36312 biolink:NamedThing sarpagan monarch-merged.owl owl:Class CHEBI:37673 biolink:NamedThing ajmalan monarch-merged.owl owl:Class CHEBI:37697 biolink:NamedThing indolocarbazole alkaloid monarch-merged.owl owl:Class CHEBI:48274 biolink:NamedThing tryptamine alkaloid monarch-merged.owl owl:Class CHEBI:63167 biolink:NamedThing raucaffrinoline monarch-merged.owl owl:Class CHEBI:63168 biolink:NamedThing perakine monarch-merged.owl owl:Class CHEBI:65321 biolink:NamedThing terpenoid indole alkaloid monarch-merged.owl owl:Class CHEBI:134350 biolink:NamedThing lipid A 4'-(2-aminoethyl diphosphate) oxoanion monarch-merged.owl owl:Class CHEBI:60086 biolink:NamedThing lipid A oxoanion monarch-merged.owl owl:Class CHEBI:134351 biolink:NamedThing lipid A 1-(2-aminoethyl diphosphate) oxoanion monarch-merged.owl owl:Class CHEBI:176430 biolink:NamedThing a (Kdo)2-(acyl)-lipid IVA(6-) monarch-merged.owl owl:Class CHEBI:60085 biolink:NamedThing phosphoethanolamine-Kdo2-lipid A(6-) monarch-merged.owl owl:Class CHEBI:61502 biolink:NamedThing heptosyl-(KDO)2-lipid A(6-) monarch-merged.owl owl:Class CHEBI:61507 biolink:NamedThing (heptosyl)2-(KDO)2-lipid A(6-) monarch-merged.owl owl:Class CHEBI:61520 biolink:NamedThing (KDO)2-(palmitoleoyl)-lipid IVA(6-) monarch-merged.owl owl:Class CHEBI:61522 biolink:NamedThing (KDO)2-(palmitoleoyl-myristoyl)-lipid A(6-) monarch-merged.owl owl:Class CHEBI:61524 biolink:NamedThing (KDO)2-(lauroyl)-lipid IVA(6-) monarch-merged.owl owl:Class CHEBI:61734 biolink:NamedThing lipid IIA(3-) monarch-merged.owl owl:Class CHEBI:61997 biolink:NamedThing glucosyl-(heptosyl)2-(KDO)2-lipid A(6-) monarch-merged.owl owl:Class CHEBI:61998 biolink:NamedThing glucosyl-heptosyl-4-phosphonatoheptosyl-(KDO)2-lipid A(8-) monarch-merged.owl owl:Class CHEBI:61999 biolink:NamedThing glucosyl-(heptosyl)2-4-phosphonatoheptosyl-(KDO)2-lipid A(8-) monarch-merged.owl owl:Class CHEBI:62000 biolink:NamedThing glucosyl-heptosyl-(phosphonatoheptosyl)2-(KDO)2-lipid A(10-) monarch-merged.owl owl:Class CHEBI:62001 biolink:NamedThing galactosyl-glucosyl-heptosyl-(phosphonatoheptosyl)2-(KDO)2-lipid A(10-) monarch-merged.owl owl:Class CHEBI:62002 biolink:NamedThing galactosyl-(glucosyl)2-(heptosyl)3-(KDO)2-lipid A-bisphosphate(10-) monarch-merged.owl owl:Class CHEBI:62003 biolink:NamedThing galactosyl-(glucosyl)3-(heptosyl)3-(KDO)2-lipid A-bisphosphate(10-) monarch-merged.owl owl:Class CHEBI:62004 biolink:NamedThing lipid A-core(10-) monarch-merged.owl owl:Class CHEBI:86226 biolink:NamedThing lipid IIA(2-) monarch-merged.owl owl:Class CHEBI:87048 biolink:NamedThing palmitoyllipid A(4-) monarch-merged.owl owl:Class CHEBI:87058 biolink:NamedThing lipid IIB(2-) monarch-merged.owl owl:Class CHEBI:87095 biolink:NamedThing lipid A 1-(2-aminoethyl diphosphate)(3-) monarch-merged.owl owl:Class CHEBI:87096 biolink:NamedThing lipid A 1,4'-bis(2-aminoethyl diphosphate)(3-) monarch-merged.owl owl:Class CHEBI:134356 biolink:NamedThing 8-methylmenaquinone-6 monarch-merged.owl owl:Class CHEBI:142110 biolink:NamedThing 8-methylmenaquinone monarch-merged.owl owl:Class CHEBI:25185 biolink:NamedThing menaquinones monarch-merged.owl owl:Class CHEBI:134607 biolink:NamedThing beta-dihydromenaquinone-9 monarch-merged.owl owl:Class CHEBI:140189 biolink:NamedThing omega-hydroxy-beta-dihydromenaquinone-9 monarch-merged.owl owl:Class CHEBI:16374 biolink:NamedThing menaquinone monarch-merged.owl owl:Class CHEBI:26253 biolink:NamedThing polyprenylhydroquinone monarch-merged.owl owl:Class CHEBI:24233 biolink:NamedThing geranylhydroquinone monarch-merged.owl owl:Class CHEBI:52970 biolink:NamedThing ubiquinol-6 monarch-merged.owl owl:Class CHEBI:60655 biolink:NamedThing 6-methoxy-2-octaprenylhydroquinone monarch-merged.owl owl:Class CHEBI:60656 biolink:NamedThing 5-methoxy-2-methyl-3-octaprenylhydroquinone monarch-merged.owl owl:Class CHEBI:61158 biolink:NamedThing 3''-hydroxy-geranylhydroquinone monarch-merged.owl owl:Class CHEBI:61473 biolink:NamedThing all-trans-5-methoxy-2-methyl-3-hexaprenylhydroquinone monarch-merged.owl owl:Class CHEBI:61682 biolink:NamedThing ubiquinol-8 monarch-merged.owl owl:Class CHEBI:62192 biolink:NamedThing plastoquinol monarch-merged.owl owl:Class CHEBI:64180 biolink:NamedThing 2-decaprenyl-6-methoxyhydroquinone monarch-merged.owl owl:Class CHEBI:64181 biolink:NamedThing 2-decaprenyl-6-methoxy-3-methylhydroquinone monarch-merged.owl owl:Class CHEBI:64183 biolink:NamedThing ubiquinol-10 monarch-merged.owl owl:Class CHEBI:75402 biolink:NamedThing 2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinone monarch-merged.owl owl:Class CHEBI:75411 biolink:NamedThing 2-methyl-6-geranylgeranyl-1,4-benzoquinol monarch-merged.owl owl:Class CHEBI:75412 biolink:NamedThing 2,3-dimethyl-6-geranylgeranyl-1,4-benzoquinol monarch-merged.owl owl:Class CHEBI:84166 biolink:NamedThing 2-methoxy-6-all-trans-polyprenylhydroquinone monarch-merged.owl owl:Class CHEBI:84167 biolink:NamedThing 2-methoxy-3-methyl-6-all-trans-polyprenylhydroquinone monarch-merged.owl owl:Class CHEBI:84422 biolink:NamedThing 3-demethylubiquinol monarch-merged.owl owl:Class CHEBI:84424 biolink:NamedThing ubiquinol-9 monarch-merged.owl owl:Class CHEBI:84432 biolink:NamedThing ubiquinol-7 monarch-merged.owl owl:Class CHEBI:134358 biolink:NamedThing 8-geranylumbelliferone monarch-merged.owl owl:Class CHEBI:25409 biolink:NamedThing monoterpenoid monarch-merged.owl owl:Class CHEBI:134359 biolink:NamedThing 8-geranylesculetin monarch-merged.owl owl:Class CHEBI:16980 biolink:NamedThing geranial monarch-merged.owl owl:Class CHEBI:22912 biolink:NamedThing bornane monoterpenoid monarch-merged.owl owl:Class CHEBI:24221 biolink:NamedThing 3,7-dimethylocta-2,6-dien-1-ol monarch-merged.owl owl:Class CHEBI:25186 biolink:NamedThing p-menthane monoterpenoid monarch-merged.owl owl:Class CHEBI:26133 biolink:NamedThing pinane monoterpenoid monarch-merged.owl owl:Class CHEBI:36739 biolink:NamedThing fenchane monoterpenoid monarch-merged.owl owl:Class CHEBI:49247 biolink:NamedThing apo carotenoid monoterpenoid monarch-merged.owl owl:Class CHEBI:50041 biolink:NamedThing thujane monoterpenoid monarch-merged.owl owl:Class CHEBI:50250 biolink:NamedThing (4R,7S)-7-isopropyl-4-methyloxepan-2-one monarch-merged.owl owl:Class CHEBI:50563 biolink:NamedThing iridoid monoterpenoid monarch-merged.owl owl:Class CHEBI:53167 biolink:NamedThing hydroxy-beta-cyclocitral monarch-merged.owl owl:Class CHEBI:53177 biolink:NamedThing beta-cyclocitral monarch-merged.owl owl:Class CHEBI:64229 biolink:NamedThing 6-isopropenyl-3-methyloxepan-2-one monarch-merged.owl owl:Class CHEBI:64236 biolink:NamedThing (6E)-8-oxogeraniol monarch-merged.owl owl:Class CHEBI:64238 biolink:NamedThing (6E)-8-hydroxygeranial monarch-merged.owl owl:Class CHEBI:64239 biolink:NamedThing (6E)-8-oxogeranial monarch-merged.owl owl:Class CHEBI:64274 biolink:NamedThing 7-hydroxy-4-isopropenyl-7-methyloxepan-2-one monarch-merged.owl owl:Class CHEBI:72293 biolink:NamedThing monoterpene glycoside monarch-merged.owl owl:Class CHEBI:37912 biolink:NamedThing hydroxycoumarin monarch-merged.owl owl:Class CHEBI:17224 biolink:NamedThing 4-methylumbelliferone monarch-merged.owl owl:Class CHEBI:17313 biolink:NamedThing 7,8-dihydroxycoumarin monarch-merged.owl owl:Class CHEBI:17488 biolink:NamedThing scopoletin monarch-merged.owl owl:Class CHEBI:27510 biolink:NamedThing umbelliferone monarch-merged.owl owl:Class CHEBI:31107 biolink:NamedThing 3-amino-4,7-dihydroxycoumarin monarch-merged.owl owl:Class CHEBI:31923 biolink:NamedThing novobiocic acid monarch-merged.owl owl:Class CHEBI:40070 biolink:NamedThing 4-hydroxycoumarin monarch-merged.owl owl:Class CHEBI:490095 biolink:NamedThing esculetin monarch-merged.owl owl:Class CHEBI:69042 biolink:NamedThing 7-demethylsuberosin monarch-merged.owl owl:Class CHEBI:74005 biolink:NamedThing 8-desmethylnovobiocic acid monarch-merged.owl owl:Class CHEBI:81485 biolink:NamedThing osthenol monarch-merged.owl owl:Class CHEBI:139588 biolink:NamedThing alpha-hydroxy ketone An alpha-oxyketone that has a hydroxy group as the alpha-oxy moiety. monarch-merged.owl alpha-hydroxy-ketones|alpha-hydroxyketone|alpha-hydroxy ketones|alpha-hydroxy-ketone|alpha-hydroxyketones PMID:20382022|PMID:19908854|PMID:23295224|PMID:15326516 chebi_ontology owl:Class CHEBI:22478 biolink:NamedThing amino alcohol An alcohol containing an amino functional group in addition to the alcohol-defining hydroxy group. monarch-merged.owl amino alcohols|aminoalcohol|aminoalcohols chebi_ontology owl:Class CHEBI:23480 biolink:NamedThing cyclohexanols An alcohol in which one or more hydroxy groups are attached to a cyclohexane skeleton. monarch-merged.owl chebi_ontology owl:Class CHEBI:23495 biolink:NamedThing cyclopentanols An alcohol in which one or more hydroxy groups are attached to a cyclopentane skeleton. monarch-merged.owl chebi_ontology owl:Class CHEBI:26244 biolink:NamedThing prenols monarch-merged.owl owl:Class CHEBI:33854 biolink:NamedThing aromatic alcohol Any alcohol in which the alcoholic hydroxy group is attached to a carbon which is itself bonded to an aromatic ring. monarch-merged.owl aromatic alcohols|aryl alcohols|aryl alcohol|an aromatic alcohol 0 HOR 17.007 17.00274 *O CHEBI:2831|CHEBI:22620|CHEBI:13818|CHEBI:22640 chebi_ontology owl:Class CHEBI:46703 biolink:NamedThing geosmin monarch-merged.owl owl:Class CHEBI:5653 biolink:NamedThing hemiacetal monarch-merged.owl owl:Class CHEBI:63732 biolink:NamedThing 1,1-diol monarch-merged.owl owl:Class CHEBI:76478 biolink:NamedThing dibutyrin monarch-merged.owl owl:Class CHEBI:88155 biolink:NamedThing dipropionin monarch-merged.owl owl:Class CHEBI:88156 biolink:NamedThing diacetin monarch-merged.owl owl:Class CHEBI:134363 biolink:NamedThing tertiary amine oxide monarch-merged.owl owl:Class CHEBI:35580 biolink:NamedThing N-oxide monarch-merged.owl owl:Class CHEBI:38189 biolink:NamedThing pyridine N-oxides monarch-merged.owl owl:Class CHEBI:71632 biolink:NamedThing pyrazine N-oxide monarch-merged.owl owl:Class CHEBI:134364 biolink:NamedThing 7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oyl-CoA monarch-merged.owl owl:Class CHEBI:134366 biolink:NamedThing 12alpha-hydroxy-3-oxochola-4,6-dien-24-oyl-CoA monarch-merged.owl owl:Class CHEBI:137643 biolink:NamedThing (22E)-3-oxochola-4,22-dien-24-oyl-CoA monarch-merged.owl owl:Class CHEBI:138376 biolink:NamedThing allocholoyl-CoA monarch-merged.owl owl:Class CHEBI:138377 biolink:NamedThing allodeoxycholoyl-CoA monarch-merged.owl owl:Class CHEBI:23197 biolink:NamedThing cholestanoyl-CoA monarch-merged.owl owl:Class CHEBI:23203 biolink:NamedThing cholestenoyl-CoA monarch-merged.owl owl:Class CHEBI:23218 biolink:NamedThing choloyl-CoAs monarch-merged.owl owl:Class CHEBI:27505 biolink:NamedThing 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-en-26-oyl-CoA monarch-merged.owl owl:Class CHEBI:50111 biolink:NamedThing deoxycholoyl-CoA monarch-merged.owl owl:Class CHEBI:84576 biolink:NamedThing (25S)-3beta-hydroxy-5-cholesten-26-oyl-CoA monarch-merged.owl owl:Class CHEBI:84616 biolink:NamedThing 3-oxo-23,24-bisnorchol-4-en-22-oyl-CoA monarch-merged.owl owl:Class CHEBI:84617 biolink:NamedThing 3-oxo-23,24-bisnorchola-1,4-dien-22-oyl-CoA monarch-merged.owl owl:Class CHEBI:84618 biolink:NamedThing 3-hydroxy-9-oxo-9,10-seco-23,24-bisnorchola-1,3,5(10)-trien-22-oyl-CoA monarch-merged.owl owl:Class CHEBI:84666 biolink:NamedThing (25S)-3-oxocholest-4-en-26-oyl-CoA monarch-merged.owl owl:Class CHEBI:85907 biolink:NamedThing 9alpha-hydroxy-3-oxo-23,24-bisnorchola-1,4-dien-22-oyl-CoA monarch-merged.owl owl:Class CHEBI:85909 biolink:NamedThing 9alpha-hydroxy-3-oxo-23,24-bisnorchol-4-en-22-oyl-CoA monarch-merged.owl owl:Class CHEBI:86293 biolink:NamedThing 3,22-dioxochol-4-en-24-oyl-CoA monarch-merged.owl owl:Class CHEBI:86301 biolink:NamedThing 20-methyl-3-oxopregna-4,17-dien-21-oyl-CoA monarch-merged.owl owl:Class CHEBI:86305 biolink:NamedThing 3beta-hydroxychol-5-en-24-oyl-CoA monarch-merged.owl owl:Class CHEBI:86308 biolink:NamedThing 17-hydroxy-3-oxopregn-4-en-20-carboxy-CoA monarch-merged.owl owl:Class CHEBI:86316 biolink:NamedThing 3beta-hydroxychola-5,22-dien-24-oyl-CoA monarch-merged.owl owl:Class CHEBI:87139 biolink:NamedThing 3-oxochol-4-en-24-oyl-CoA monarch-merged.owl owl:Class CHEBI:87141 biolink:NamedThing 3-oxocholesta-4,24-dien-26-oyl-CoA monarch-merged.owl owl:Class CHEBI:88064 biolink:NamedThing (24E)-3alpha,7alpha-dihydroxy-5beta-cholest-24-en-26-oyl-CoA monarch-merged.owl owl:Class CHEBI:172368 biolink:NamedThing brominated flame retardant monarch-merged.owl owl:Class CHEBI:22926 biolink:NamedThing bromohydrocarbon monarch-merged.owl owl:Class CHEBI:22929 biolink:NamedThing bromoalkane monarch-merged.owl owl:Class CHEBI:37158 biolink:NamedThing bromocarboxylic acid monarch-merged.owl owl:Class CHEBI:134389 biolink:NamedThing beta-D-Glcp-(1->4)-alpha-L-Rhap-(1->3)-D-Glcp monarch-merged.owl owl:Class CHEBI:27150 biolink:NamedThing trisaccharide monarch-merged.owl trisaccharides Wikipedia:Trisaccharide chebi_ontology owl:Class CHEBI:146179 biolink:NamedThing galactotriose monarch-merged.owl owl:Class CHEBI:146180 biolink:NamedThing glucotriose monarch-merged.owl owl:Class CHEBI:149429 biolink:NamedThing xylotriose monarch-merged.owl owl:Class CHEBI:16634 biolink:NamedThing raffinose monarch-merged.owl owl:Class CHEBI:16885 biolink:NamedThing 1-kestose monarch-merged.owl owl:Class CHEBI:17332 biolink:NamedThing planteose monarch-merged.owl owl:Class CHEBI:50661 biolink:NamedThing loliose monarch-merged.owl owl:Class CHEBI:55514 biolink:NamedThing laminaritriose monarch-merged.owl owl:Class CHEBI:60948 biolink:NamedThing alpha-D-Gal-(1->4)-beta-D-Gal-(1->4)-D-Glc A linear trisaccharide comprising D-glucose (at the reducing end) having an alpha-D-galactosyl-(1->4)-beta-D-galactosyl moiety at the 4-position. monarch-merged.owl alpha-D-galactosyl-(1->4)-beta-D-galactosyl-(1->4)-D-glucose|(Gal)2 (Glc)1|4-O-(4-O-alpha-D-galactopyranosyl-beta-D-galactopyranosyl)-D-glucopyranose|Galalpha1,4Gal-beta1,4Glc|WURCS=2.0/3,3,2/[a2122h-1x_1-5][a2112h-1b_1-5][a2112h-1a_1-5]/1-2-3/a4-b1_b4-c1|Pk|Galalpha1-4Gal-beta1-4Glc~OH|Gal-alpha-1,4-Gal-beta-1,4-Glc|4'-galactosyllactose|alpha-D-Galp-(1->4)-beta-D-Galp-(1->4)-D-Glcp|alpha-D-galactopyranosyl-(1->4)-beta-D-galactopyranosyl-(1->4)-D-glucopyranose|Gal-alpha1,4Gal-beta1,4-Glc|Galalpha1-4Gal-beta1-4Glc 0 C18H32O16 InChI=1S/C18H32O16/c19-1-4-7(22)8(23)12(27)17(31-4)34-15-6(3-21)32-18(13(28)10(15)25)33-14-5(2-20)30-16(29)11(26)9(14)24/h4-29H,1-3H2/t4-,5-,6-,7+,8+,9-,10-,11-,12-,13-,14-,15+,16?,17-,18+/m1/s1 FYGDTMLNYKFZSV-ANKSBSNASA-N 504.43710 504.16903 OC[C@H]1O[C@H](O[C@H]2[C@@H](CO)O[C@@H](O[C@@H]3[C@@H](CO)OC(O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O PMID:2292729|CAS:80446-87-3|PMID:12020649|PMID:16133831|KEGG:G03416|PMID:17991151|PMID:9538266|PMID:2456994|GlyGen:G06000DZ|Reaxys:5386141|GlyTouCan:G06000DZ chebi_ontology owl:Class CHEBI:61991 biolink:NamedThing maltotriose trisaccharide monarch-merged.owl owl:Class CHEBI:62777 biolink:NamedThing maltotriulose monarch-merged.owl owl:Class CHEBI:62781 biolink:NamedThing alpha-L-Araf-(1->5)-alpha-L-Araf-(1->5)-L-Araf monarch-merged.owl owl:Class CHEBI:64833 biolink:NamedThing 6-kestotriose monarch-merged.owl owl:Class CHEBI:134399 biolink:NamedThing ADP-5-ethyl-4-methylthiazole-2-carboxylic acid monarch-merged.owl owl:Class CHEBI:139036 biolink:NamedThing ent-Photinus luciferin monarch-merged.owl owl:Class CHEBI:17165 biolink:NamedThing Photinus luciferin monarch-merged.owl owl:Class CHEBI:64769 biolink:NamedThing organic cationic group monarch-merged.owl owl:Class CHEBI:64718 biolink:NamedThing L-alaniniumyl group monarch-merged.owl owl:Class CHEBI:64719 biolink:NamedThing L-argininiumyl(2+) group monarch-merged.owl owl:Class CHEBI:64723 biolink:NamedThing glyciniumyl group monarch-merged.owl owl:Class CHEBI:64738 biolink:NamedThing L-seriniumyl group monarch-merged.owl owl:Class CHEBI:64739 biolink:NamedThing L-threoniniumyl group monarch-merged.owl owl:Class CHEBI:64741 biolink:NamedThing L-valiniumyl group monarch-merged.owl owl:Class CHEBI:64742 biolink:NamedThing L-asparaginiumyl group monarch-merged.owl owl:Class CHEBI:65248 biolink:NamedThing L-tyrosiniumyl group monarch-merged.owl owl:Class CHEBI:65249 biolink:NamedThing L-lysiniumyl(2+) group monarch-merged.owl owl:Class CHEBI:65250 biolink:NamedThing L-cysteiniumyl group monarch-merged.owl owl:Class CHEBI:74655 biolink:NamedThing 7-methylguanosine 5'-triphosphate group monarch-merged.owl owl:Class CHEBI:74658 biolink:NamedThing N(2),N(2),N(7)-trimethylguanosine 5'-triphosphate group monarch-merged.owl owl:Class CHEBI:76915 biolink:NamedThing N,N-dimethyl-L-alaniniumyl group monarch-merged.owl owl:Class CHEBI:78513 biolink:NamedThing 3'-(L-arginyl)adenylyl(1+) group monarch-merged.owl owl:Class CHEBI:78529 biolink:NamedThing 3'-(L-lysyl)adenylyl(1+) group monarch-merged.owl owl:Class CHEBI:83545 biolink:NamedThing agmatidine 5'-phosphate(1+) residue monarch-merged.owl owl:Class CHEBI:83824 biolink:NamedThing L-cysteine derivative A proteinogenic amino acid derivative resulting from the formal reaction of L-cysteine at the amino group, carboxy group, or thiol group, or from the replacement of any hydrogen of L-cysteine by a heteroatom. monarch-merged.owl L-cysteine derivatives chebi_ontology owl:Class CHEBI:15769 biolink:NamedThing N-[(R)-4-phosphopantothenoyl]-L-cysteine monarch-merged.owl owl:Class CHEBI:16856 biolink:NamedThing glutathione A tripeptide compound consisting of glutamic acid attached via its side chain to the N-terminus of cysteinylglycine. monarch-merged.owl gamma-L-Glutamyl-L-cysteinyl-glycine|N-(N-gamma-L-Glutamyl-L-cysteinyl)glycine|GSH|5-L-Glutamyl-L-cysteinylglycine|Reduced glutathione|L-gamma-glutamyl-L-cysteinylglycine|Glutathione|Glutathione-SH 0 C10H17N3O6S InChI=1S/C10H17N3O6S/c11-5(10(18)19)1-2-7(14)13-6(4-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/t5-,6-/m0/s1 RWSXRVCMGQZWBV-WDSKDSINSA-N 307.320 307.08381 N[C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(=O)O)C(=O)O Drug_Central:1312|PDBeChem:GSH|PMID:4745654|HMDB:HMDB0000125|DrugBank:DB00143|KEGG:C00051|KEGG:D00014|PMID:4200890|PMID:17439666|MetaCyc:GLUTATHIONE|KNApSAcK:C00001518|CAS:70-18-8|Wikipedia:Glutathione|Reaxys:1729812 CHEBI:43049|CHEBI:14327|CHEBI:42873|CHEBI:12402|CHEBI:24334|CHEBI:5437 chebi_ontology owl:Class CHEBI:18416 biolink:NamedThing N-[(R)-pantothenoyl]-L-cysteine monarch-merged.owl owl:Class CHEBI:22020 biolink:NamedThing S-(ADP-ribosyl)-L-cysteine monarch-merged.owl owl:Class CHEBI:25840 biolink:NamedThing palmitoyl-L-cysteine monarch-merged.owl owl:Class CHEBI:41721 biolink:NamedThing L-cysteine-S-dioxide monarch-merged.owl owl:Class CHEBI:47910 biolink:NamedThing S-substituted L-cysteine monarch-merged.owl owl:Class CHEBI:47911 biolink:NamedThing S-substituted N-acetyl-L-cysteine monarch-merged.owl owl:Class CHEBI:52857 biolink:NamedThing S-sulfanylglutathione monarch-merged.owl owl:Class CHEBI:73546 biolink:NamedThing grixazone A monarch-merged.owl owl:Class CHEBI:73548 biolink:NamedThing grixazone B monarch-merged.owl owl:Class CHEBI:79057 biolink:NamedThing hercynylcysteine sulfoxide monarch-merged.owl owl:Class CHEBI:85904 biolink:NamedThing glutathione S-sulfinate monarch-merged.owl owl:Class CHEBI:134412 biolink:NamedThing 10-formyltetrahydrofolyl-(Glu)n monarch-merged.owl owl:Class CHEBI:26908 biolink:NamedThing tetrahydrofolyl glutamate monarch-merged.owl owl:Class CHEBI:28624 biolink:NamedThing tetrahydrofolyl-poly(glutamic acid) macromolecule monarch-merged.owl owl:Class CHEBI:134413 biolink:NamedThing 10-formyltetrahydrofolyl-(Glu)n polyanion monarch-merged.owl owl:Class CHEBI:53368 biolink:NamedThing ionic macromolecule A macromolecule containing ionic groups. monarch-merged.owl ionic polymer|polyionic macromolecule chebi_ontology owl:Class CHEBI:53309 biolink:NamedThing polyanionic macromolecule A polymer carrying multiple negative charges. monarch-merged.owl polyanion|polyanions chebi_ontology owl:Class CHEBI:53376 biolink:NamedThing gamma-poly(glutamate) macromolecule monarch-merged.owl owl:Class CHEBI:60473 biolink:NamedThing 5,10-methylenetetrahydrofolate polyglutamate macromolecule monarch-merged.owl owl:Class CHEBI:78629 biolink:NamedThing N-(6-aminohexanoyl)-6-aminohexanoic acid zwitterion monomer monarch-merged.owl owl:Class CHEBI:57349 biolink:NamedThing 3-oxopalmitoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57391 biolink:NamedThing phytanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62615 biolink:NamedThing 3-oxolauroyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:65115 biolink:NamedThing 3-oxoicosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71407 biolink:NamedThing 3-oxooctadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71408 biolink:NamedThing 3-hydroxyoctadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71430 biolink:NamedThing 3-oxoisopentadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71445 biolink:NamedThing 3-oxoisoheptadecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71451 biolink:NamedThing 3-oxodocosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71456 biolink:NamedThing 3-hydroxydocosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73976 biolink:NamedThing 3-oxo-octacosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73977 biolink:NamedThing 3-oxotetracosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73980 biolink:NamedThing 3-oxohexacosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74070 biolink:NamedThing (13Z)-3-oxodocosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74071 biolink:NamedThing (15Z)-3-oxotetracosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74228 biolink:NamedThing 3-oxotriacontanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74230 biolink:NamedThing (13Z,16Z,19Z,22Z,25Z)-3-oxooctacosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74246 biolink:NamedThing (15Z,18Z,21Z,24Z,27Z)-3-oxotriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74249 biolink:NamedThing (19Z,22Z,25Z,28Z,31Z)-3-oxotetratriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74254 biolink:NamedThing (17Z,20Z,23Z,26Z,29Z)-3-oxodotriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74261 biolink:NamedThing (21Z,24Z,27Z,30Z,33Z)-3-oxohexatriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74263 biolink:NamedThing (23Z,26Z,29Z,32Z,35Z)-3-oxooctatriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74276 biolink:NamedThing (R)-3-hydroxylauroyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74278 biolink:NamedThing (R)-3-hydroxypalmitoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74283 biolink:NamedThing (13Z,16Z,19Z,22Z)-3-oxooctacosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74286 biolink:NamedThing (15Z,18Z,21Z,24Z)-3-oxotriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74288 biolink:NamedThing (17Z,20Z,23Z,26Z)-3-oxodotriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74290 biolink:NamedThing (19Z,22Z,25Z,28Z)-3-oxotetratriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74292 biolink:NamedThing (21Z,24Z,27Z,30Z)-3-oxohexatriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74294 biolink:NamedThing (23Z,26Z,29Z,32Z)-3-oxooctatriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74304 biolink:NamedThing (6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74316 biolink:NamedThing (14Z,17Z,20Z,23Z,26Z,29Z)-3-oxodotriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74318 biolink:NamedThing (16Z,19Z,22Z,25Z,28Z,31Z)-3-oxotetratriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74320 biolink:NamedThing (18Z,21Z,24Z,27Z,30Z,33Z)-3-oxohexatriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76367 biolink:NamedThing (6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76374 biolink:NamedThing (R)-3-hydroxystearoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76377 biolink:NamedThing (3R)-3-hydroxytetracosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76378 biolink:NamedThing (R)-3-hydroxyhexacosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76382 biolink:NamedThing (R)-3-hydroxyoctacosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76384 biolink:NamedThing (R)-3-hydroxytriacontanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76389 biolink:NamedThing (3R,13Z)-3-hydroxydocosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76392 biolink:NamedThing (3R,15Z)-3-hydroxytetracosenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76422 biolink:NamedThing (3R,13Z,16Z,19Z,22Z)-3-hydroxyoctacosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76430 biolink:NamedThing (3R,15Z,18Z,21Z,24Z)-3-hydroxytriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76432 biolink:NamedThing (3R,17Z,20Z,23Z,26Z)-3-hydroxydotriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76435 biolink:NamedThing (3R,19Z,22Z,25Z,28Z)-3-hydroxytetratriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76437 biolink:NamedThing (3R,21Z,24Z,27Z,30Z)-3-hydroxyhexatriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76440 biolink:NamedThing (3R,23Z,26Z,29Z,32Z)-3-hydroxyoctatriacontatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76468 biolink:NamedThing (3R,13Z,16Z,19Z,22Z,25Z)-3-hydroxyoctacosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76470 biolink:NamedThing (3R,15Z,18Z,21Z,24Z,27Z)-3-hydroxytriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76473 biolink:NamedThing (3R,17Z,20Z,23Z,26Z,29Z)-3-hydroxydotriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76475 biolink:NamedThing (3R,19Z,22Z,25Z,28Z,31Z)-3-hydroxytetratriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76477 biolink:NamedThing (3R,21Z,24Z,27Z,30Z,33Z)-3-hydroxyhexatriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76481 biolink:NamedThing (3R,23Z,26Z,29Z,32Z,35Z)-3-hydroxyoctatriacontapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76502 biolink:NamedThing (3R,14Z,17Z,20Z,23Z,26Z,29Z)-3-hydroxydotriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76505 biolink:NamedThing (3R,16Z,19Z,22Z,25Z,28Z,31Z)-3-hydroxytetratriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76513 biolink:NamedThing (3R,18Z,21Z,24Z,27Z,30Z,33Z)-3-hydroxyhexatriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83795 biolink:NamedThing 3-oxodotriacontanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:83969 biolink:NamedThing 3-methylpalmitoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:19138 biolink:NamedThing 12-HETE A HETE that is icosa-5,8,10,14-tetraenoic acid substituted by a hydroxy group at position 12. It is a metabolite of arachidonic acid. monarch-merged.owl 12-hydroxy-5,8,10,14-icosatetraenoic acid|12-hydroxy-5,8,10,14-eicosatetraenoic acid 0 C20H32O3 InChI=1S/C20H32O3/c1-2-3-4-5-10-13-16-19(21)17-14-11-8-6-7-9-12-15-18-20(22)23/h7-11,13-14,17,19,21H,2-6,12,15-16,18H2,1H3,(H,22,23) ZNHVWPKMFKADKW-UHFFFAOYSA-N 320.46628 320.23514 [H]C(CCCC(O)=O)=CCC([H])=CC([H])=CC(O)CC([H])=CCCCCC PMID:8207335|PMID:24685839|HMDB:HMDB0006111 chebi_ontology owl:Class CHEBI:28209 biolink:NamedThing 5(S)-HETE monarch-merged.owl owl:Class CHEBI:34146 biolink:NamedThing 12(S)-HETE monarch-merged.owl owl:Class CHEBI:34306 biolink:NamedThing 20-HETE monarch-merged.owl owl:Class CHEBI:60943 biolink:NamedThing 5-HETE A HETE having a 5-hydroxy group and (6E)-, (8Z)-, (11Z)- and (14Z)-double bonds. monarch-merged.owl (6E,8Z,11Z,14Z)-5-hydroxy-6,8,11,14-eicosatetraenoic acid|5-hydroxy,6E,8Z,11Z,14Z-eicosatetraenoic acid|5-hydroxy-6E,8Z,11Z,14Z-eicosatetraenoic acid|5-hydroxy-6(E),8(Z),11(Z),14(Z)-eicosatetraenoic acid|5-OH 6t,8c,11c,14c-20:4|(6E,8Z,11Z,14Z)-5-hydroxyeicosa-6,8,11,14-tetraenoic acid|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid|5-hydroxy-6-trans-8,11,14-cis-eicosatetraenoic acid|(6E,8Z,11Z,14Z)-5-hydroxyicosa-6,8,11,14-tetraenoic acid 0 C20H32O3 InChI=1S/C20H32O3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-16-19(21)17-15-18-20(22)23/h6-7,9-10,12-14,16,19,21H,2-5,8,11,15,17-18H2,1H3,(H,22,23)/b7-6-,10-9-,13-12-,16-14+ KGIJOOYOSFUGPC-XTDASVJISA-N 320.46630 320.23514 CCCCC\C=C/C\C=C/C\C=C/C=C/C(O)CCCC(O)=O LIPID_MAPS_instance:LMFA03060084|PMID:10987416|Reaxys:4691532 CHEBI:119673 chebi_ontology owl:Class CHEBI:63579 biolink:NamedThing 18-HETE monarch-merged.owl owl:Class CHEBI:63995 biolink:NamedThing 17-HETE monarch-merged.owl owl:Class CHEBI:63998 biolink:NamedThing 19-HETE monarch-merged.owl owl:Class CHEBI:64017 biolink:NamedThing (5Z,8Z,11Z,13E)-15-HETE monarch-merged.owl owl:Class CHEBI:72606 biolink:NamedThing 11-HETE monarch-merged.owl owl:Class CHEBI:72643 biolink:NamedThing 8-HETE monarch-merged.owl owl:Class CHEBI:16978 biolink:NamedThing leukotriene C4 monarch-merged.owl owl:Class CHEBI:27562 biolink:NamedThing 20-hydroxy-20-oxoleukotriene B4 monarch-merged.owl owl:Class CHEBI:134464 biolink:NamedThing [(2->6)-beta-D-fructofuranosyl-]n alpha-D-glucopyranoside monarch-merged.owl owl:Class CHEBI:71296 biolink:NamedThing fructan derivative monarch-merged.owl owl:Class CHEBI:64595 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phospho-N,N-dimethylethanolamine monarch-merged.owl owl:Class CHEBI:85963 biolink:NamedThing 1,2-dioleoyl-sn-glycero-3-phospho-N,N-dimethylethanolamine monarch-merged.owl owl:Class CHEBI:134499 biolink:NamedThing 13,14-dihydro-15-oxoprostaglandin E1 monarch-merged.owl owl:Class CHEBI:15544 biolink:NamedThing prostaglandin E1 monarch-merged.owl owl:Class CHEBI:15547 biolink:NamedThing 15-dehydro-prostaglandin E2 monarch-merged.owl owl:Class CHEBI:15548 biolink:NamedThing 15-dehydro-prostaglandin E1 monarch-merged.owl owl:Class CHEBI:15550 biolink:NamedThing 13,14-dihydro-15-oxo-prostaglandin E2 monarch-merged.owl owl:Class CHEBI:15551 biolink:NamedThing prostaglandin E2 Prostaglandin F2alpha in which the hydroxy group at position 9 has been oxidised to the corresponding ketone. Prostaglandin E2 is the most common and most biologically potent of mammalian prostaglandins. monarch-merged.owl Cervidil|Prostarmon E|(5Z,13E,15S)-11alpha,15-dihydroxy-9-oxoprosta-5,13-dien-1-oic acid|(5Z,11alpha,13E,15S)-11,15-dihydroxy-9-oxoprosta-5,13-dien-1-oic acid|Cerviprost|(E,Z)-(1R,2R,3R)-7-(3-Hydroxy-2-((3S)-(3-hydroxy-1-octenyl))-5-oxocyclopentyl)-5-heptenoic acid|(15S)-prostaglandin E2|Prostin|dinoprostonum|(Z)-7-((1R,2R,3R)-3-hydroxy-2-((S,E)-3-hydroxyoct-1-enyl)-5-oxocyclopentyl)hept-5-enoic acid|Propess|Minprostin E2|Prostenone|(5Z,13E)-(15S)-11alpha,15-Dihydroxy-9-oxoprosta-5,13-dienoate|Minprositin E2|(5Z,13E)-(15S)-11alpha,15-Dihydroxy-9-oxoprost-13-enoate|U-12,062|Dinoprostone|Prostaglandin E2|Enzaprost E|U 12062|Dinoproston|dinoprostone|Prepidil|U-12062|Glandin-E2|PGE2|Cerviprime|dinoprostona|Prostin E2 0 C20H32O5 InChI=1S/C20H32O5/c1-2-3-6-9-15(21)12-13-17-16(18(22)14-19(17)23)10-7-4-5-8-11-20(24)25/h4,7,12-13,15-17,19,21,23H,2-3,5-6,8-11,14H2,1H3,(H,24,25)/b7-4-,13-12+/t15-,16+,17+,19+/m0/s1 XEYBRNLFEZDVAW-ARSRFYASSA-N 352.471|352.46510 352.22497 CCCCC[C@H](O)\C=C\[C@H]1[C@H](O)CC(=O)[C@@H]1C\C=C/CCCC(O)=O Beilstein:2224724|PMID:14703707|PMID:16787416|PMID:74611|MetaCyc:5Z13E-15S-1115-DIHYDROXY-9-OXOPROS|PMID:20671299|PMID:9276764|PMID:14535055|Drug_Central:913|PMID:24501112|Patent:DE2011969|PMID:11279302|PMID:7836930|PMID:33559528|Reaxys:2224724|HMDB:HMDB0001220|PMID:15542928|PMID:16405508|PMID:33782420|PMID:33271839|FooDB:FDB022498|PMID:33811074|Patent:NL6505799|Patent:US3598858|PMID:34065827|PMID:7224729|Wikipedia:Prostaglandin_E2|PMID:32898608|PDBeChem:P2E|PMID:2403792|PMID:14499495|PMID:12746806|PMID:6317292|DrugBank:DB00917|KEGG:C00584|PMID:33715333|PMID:16978535|PMID:34102274|PMID:15661432|PMID:12859290|KEGG:D00079|Patent:GB851827|PMID:34071686|PMID:33685091|CAS:363-24-6|LIPID_MAPS_instance:LMFA03010003|LINCS:LSM-42919|PMID:33958485 CHEBI:26323|CHEBI:8512|CHEBI:114125|CHEBI:10910|CHEBI:4625|CHEBI:10911 chebi_ontology owl:Class CHEBI:28031 biolink:NamedThing prostaglandin E3 monarch-merged.owl owl:Class CHEBI:36066 biolink:NamedThing prostaglandins Falpha monarch-merged.owl 0 C5H8O2R2 100.11580 100.05243 O[C@H]1C[C@@H](O)[C@H]([*])[C@H]1[*] chebi_ontology owl:Class CHEBI:28442 biolink:NamedThing 15-oxoprostaglandin F2alpha monarch-merged.owl owl:Class CHEBI:28852 biolink:NamedThing prostaglandin F1alpha monarch-merged.owl owl:Class CHEBI:72593 biolink:NamedThing 15-ketoprostaglandin F1alpha monarch-merged.owl owl:Class CHEBI:17919 biolink:NamedThing 3-mercapto-2-mercaptomethylpropanoic acid monarch-merged.owl owl:Class CHEBI:18091 biolink:NamedThing asparagusic acid monarch-merged.owl owl:Class CHEBI:26834 biolink:NamedThing sulfur-containing amino acid monarch-merged.owl sulfur-containing amino acids chebi_ontology owl:Class CHEBI:30065 biolink:NamedThing thioglycolic acid monarch-merged.owl owl:Class CHEBI:36223 biolink:NamedThing thiomorpholinemonocarboxylic acid monarch-merged.owl owl:Class CHEBI:38024 biolink:NamedThing carboxyalkyl sulfate monarch-merged.owl owl:Class CHEBI:47871 biolink:NamedThing mercaptopropanoic acid monarch-merged.owl owl:Class CHEBI:134533 biolink:NamedThing 3-(2-methylthioethyl)malic acid monarch-merged.owl owl:Class CHEBI:134537 biolink:NamedThing 3-(3-methylthio)propylmalic acid monarch-merged.owl owl:Class CHEBI:134535 biolink:NamedThing 2-(2-methylthio)ethylmaleic acid monarch-merged.owl owl:Class CHEBI:134536 biolink:NamedThing 2-(2-methylthiopropyl)maleic acid monarch-merged.owl owl:Class CHEBI:134540 biolink:NamedThing N-acylphytosphingosine 1-phosphate monarch-merged.owl owl:Class CHEBI:16197 biolink:NamedThing N-acylsphingosine 1-phosphate monarch-merged.owl owl:Class CHEBI:71165 biolink:NamedThing N-acyl-15-methylhexadecasphing-4-enine-1-phosphate monarch-merged.owl owl:Class CHEBI:134567 biolink:NamedThing diacylglycerol (18:1/0:0/18:1) monarch-merged.owl owl:Class CHEBI:47777 biolink:NamedThing 1,3-diglyceride monarch-merged.owl owl:Class CHEBI:75735 biolink:NamedThing 1,3-dioleoylglycerol monarch-merged.owl owl:Class CHEBI:75849 biolink:NamedThing 1,3-dipalmitoleoylglycerol monarch-merged.owl owl:Class CHEBI:75850 biolink:NamedThing 1,3-dilinoleoylglycerol monarch-merged.owl owl:Class CHEBI:75852 biolink:NamedThing 1,3-dilinolenoylglycerol monarch-merged.owl owl:Class CHEBI:75869 biolink:NamedThing 1-oleoyl-3-palmitoylglycerol monarch-merged.owl owl:Class CHEBI:77272 biolink:NamedThing 1,3-diacyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:77619 biolink:NamedThing 1,3-dipalmitoylglycerol monarch-merged.owl owl:Class CHEBI:77624 biolink:NamedThing 1-palmitoyl-3-stearoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:85701 biolink:NamedThing diacylglycerol 36:2 monarch-merged.owl owl:Class CHEBI:77097 biolink:NamedThing 1-stearoyl-2-linoleoyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:134572 biolink:NamedThing alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(34:1) monarch-merged.owl owl:Class CHEBI:15681 biolink:NamedThing alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide A sialodiosylceramide consisting of the trisaccharide alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-Glc attached to the primary hydroxy function of ceramide. monarch-merged.owl alpha-N-Acetylneuraminyl-2,3-beta-D-galactosyl-1,4-beta-D-glucosylceramide|alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide|NeuAc-GM3|(Gal)1 (Glc)1 (Neu5Ac)1 (Cer)1|alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramides|(Neu5Ac)GM3|GM3 (NeuAc)|NeuAcalpha2-3Galbeta1-4Glcbeta1-1'Cer|NeuAcalpha2->3Galbeta1->4Glc-Cer|Hematoside|Neu5Ac-alpha2->3Gal-beta1->4Glc-beta1->1'Cer|alpha-Neu5Ac-(2->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1<->1')-Cer|GM3|Neu5Acalpha2->3Galbeta1->4Glcbeta-Cer|alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer|N-Acetylneuraminyl-2,3-alpha-D-galactosyl-1,4-beta-D-glucosylceramide|(N-Acetylneuraminyl)-D-galactosyl-D-glucosylceramide|ganglioside GM3|(2S,3R,4E)-2-(acylamino)-3-hydroxyoctadec-4-en-1-yl 5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl-(2->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranoside|monosialoganglioside GM3 0 C42H73N2O21R 942.02980 941.47058 [H][C@]1(O[C@@](C[C@H](O)[C@H]1NC(C)=O)(O[C@H]1[C@@H](O)[C@@H](CO)O[C@@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OC[C@H](NC([*])=O)[C@H](O)\C=C\CCCCCCCCCCCCC)O[C@@H]2CO)[C@@H]1O)C(O)=O)[C@H](O)[C@H](O)CO PMID:15939439|PMID:19364317|PMID:1379980|PMID:3864442|PMID:2448252|PMID:2775195|PMID:16574813|PMID:11534772|PMID:9375803|PMID:21149694|PMID:1567198|PMID:16341241|PMID:7693874|PMID:15546874|PMID:2449247|PMID:15385432|LIPID_MAPS_instance:LMSP0601AJ00|PMID:7534889|PMID:2714813|PMID:2303428|PMID:1724444|PMID:16212238|PMID:3392043|PMID:11093705|PMID:167132|PMID:12950986|PMID:11164910|KEGG:G00108|PMID:15102521|PMID:8448384|PMID:8496625|PMID:1371229|KEGG:C04730 CHEBI:5227|CHEBI:10959|CHEBI:21147|CHEBI:21623|CHEBI:12288|CHEBI:12580|CHEBI:15680 chebi_ontology owl:Class CHEBI:134574 biolink:NamedThing alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(38:2) monarch-merged.owl owl:Class CHEBI:137836 biolink:NamedThing alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(36:1) monarch-merged.owl owl:Class CHEBI:84118 biolink:NamedThing ganglioside GM3 A sialodiaosylceramide that is an alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-N-acylsphingosine in which the acyl group on nitrogen is (15Z)-tetracos-15-enoyl. monarch-merged.owl monosialoganglioside GM3|NANA-Gal-Glc-ceramide|alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-N-(15Z)-tetracos-15-enoylsphingosine|monosialodihexosylganglioside|alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-N-cis-tetracos-15-enoylsphingosine|G(M3) ganglioside|GM3|(2S,3R,4E)-3-hydroxy-2-[(15Z)-tetracos-15-enoylamino]octadec-4-en-1-yl 5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl-(2->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranoside 0 C65H118N2O21 InChI=1S/C65H118N2O21/c1-4-6-8-10-12-14-16-18-19-20-21-22-23-24-25-27-29-31-33-35-37-39-52(75)67-46(47(72)38-36-34-32-30-28-26-17-15-13-11-9-7-5-2)44-83-62-57(79)56(78)59(51(43-70)85-62)86-63-58(80)61(55(77)50(42-69)84-63)88-65(64(81)82)40-48(73)53(66-45(3)71)60(87-65)54(76)49(74)41-68/h18-19,36,38,46-51,53-63,68-70,72-74,76-80H,4-17,20-35,37,39-44H2,1-3H3,(H,66,71)(H,67,75)(H,81,82)/b19-18-,38-36+/t46-,47+,48-,49+,50+,51+,53+,54+,55-,56+,57+,58+,59+,60+,61-,62+,63-,65-/m0/s1 PFJKOHUKELZMLE-VEUXDRLPSA-N 1263.63320 1262.82271 CCCCCCCCCCCCC\C=C\[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@]3(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O3)[C@H](O)[C@H](O)CO)C(O)=O)[C@H]2O)[C@H](O)[C@H]1O)NC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC PMID:24362891 chebi_ontology owl:Class CHEBI:134621 biolink:NamedThing N-[omega-(linoleoyloxy)]acyl-beta-D-glucosyl-(1<->1)-sphingosine monarch-merged.owl owl:Class CHEBI:134624 biolink:NamedThing N-[omega-(9R)-hydroperoxy-(10E,12Z)-octadecadienoyloxy]acyl-beta-D-glucosyl-(1<->1)-sphingosine monarch-merged.owl owl:Class CHEBI:134626 biolink:NamedThing N-[omega-(9R,10R)-epoxy-(13R)-hydroxy-(11E)-octadecenoyloxy]acyl-beta-D-glucosyl-(1<->1)-sphingosine monarch-merged.owl owl:Class CHEBI:22801 biolink:NamedThing beta-D-glucosyl-N-acylsphingosine monarch-merged.owl owl:Class CHEBI:70815 biolink:NamedThing N-acyl-1-O-beta-D-glucosyl-15-methylhexadecasphing-4-enine monarch-merged.owl owl:Class CHEBI:82919 biolink:NamedThing beta-D-glucosyl-(1<->1')-N-acylsphinganine monarch-merged.owl owl:Class CHEBI:83224 biolink:NamedThing beta-D-glucosyl-L-erythro-N-acylsphingosine monarch-merged.owl owl:Class CHEBI:134628 biolink:NamedThing (1E,2S)-2-methylbutanal oxime monarch-merged.owl owl:Class CHEBI:61135 biolink:NamedThing (E)-2-methylbutanal oxime monarch-merged.owl owl:Class CHEBI:134629 biolink:NamedThing (1Z,2S)-2-methylbutanal oxime monarch-merged.owl owl:Class CHEBI:61136 biolink:NamedThing (Z)-2-methylbutanal oxime monarch-merged.owl owl:Class CHEBI:134630 biolink:NamedThing (2S)-2-methylbutanenitrile monarch-merged.owl owl:Class CHEBI:61669 biolink:NamedThing 2-methylbutanenitrile monarch-merged.owl owl:Class CHEBI:63470 biolink:NamedThing sulfur-containing amino-acid anion A sulfur-containing amino acid whose alpha-carboxylic acid group is ionized (not protonated). monarch-merged.owl sulfur-containing amino-acid anions chebi_ontology owl:Class CHEBI:67039 biolink:NamedThing prenylcysteinate monarch-merged.owl owl:Class CHEBI:134632 biolink:NamedThing L-dihomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:134633 biolink:NamedThing L-trihomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:134634 biolink:NamedThing L-tetrahomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:134635 biolink:NamedThing L-pentahomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:134636 biolink:NamedThing L-hexahomomethionine zwitterion monarch-merged.owl owl:Class CHEBI:134660 biolink:NamedThing N-hydroxy-L-polyhomomethioninate monarch-merged.owl owl:Class CHEBI:58547 biolink:NamedThing N-hydroxy-L-tyrosinate monarch-merged.owl owl:Class CHEBI:58726 biolink:NamedThing N-hydroxy-L-phenylalaninate monarch-merged.owl owl:Class CHEBI:58728 biolink:NamedThing N-hydroxy-L-tryptophanate monarch-merged.owl owl:Class CHEBI:58840 biolink:NamedThing N-hydroxydihomomethioninate monarch-merged.owl owl:Class CHEBI:58841 biolink:NamedThing N-hydroxytrihomomethioninate monarch-merged.owl owl:Class CHEBI:58842 biolink:NamedThing N-hydroxytetrahomomethioninate monarch-merged.owl owl:Class CHEBI:58843 biolink:NamedThing N-hydroxypentahomomethioninate monarch-merged.owl owl:Class CHEBI:58844 biolink:NamedThing N-hydroxyhexahomomethioninate monarch-merged.owl owl:Class CHEBI:59699 biolink:NamedThing N,N-dihydroxy-alpha-amino-acid anion monarch-merged.owl owl:Class CHEBI:134663 biolink:NamedThing N,N-dihydroxy-L-polyhomomethioninate monarch-merged.owl owl:Class CHEBI:58727 biolink:NamedThing N,N-dihydroxy-L-phenylalaninate monarch-merged.owl owl:Class CHEBI:58729 biolink:NamedThing N,N-dihydroxy-L-tryptophanate monarch-merged.owl owl:Class CHEBI:58845 biolink:NamedThing N,N-dihydroxyhexahomomethioninate monarch-merged.owl owl:Class CHEBI:58846 biolink:NamedThing N,N-dihydroxydihomomethioninate monarch-merged.owl owl:Class CHEBI:58847 biolink:NamedThing N,N-dihydroxytrihomomethioninate monarch-merged.owl owl:Class CHEBI:58848 biolink:NamedThing N,N-dihydroxytetrahomomethioninate monarch-merged.owl owl:Class CHEBI:58849 biolink:NamedThing N,N-dihydroxypentahomomethioninate monarch-merged.owl owl:Class CHEBI:134664 biolink:NamedThing N-hydroxy-L-dihomomethioninate monarch-merged.owl owl:Class CHEBI:134666 biolink:NamedThing N-hydroxy-L-trihomomethioninate monarch-merged.owl owl:Class CHEBI:134668 biolink:NamedThing N-hydroxy-L-tetrahomomethioninate monarch-merged.owl owl:Class CHEBI:134670 biolink:NamedThing N-hydroxy-L-pentahomomethioninate monarch-merged.owl owl:Class CHEBI:134672 biolink:NamedThing N-hydroxy-L-hexahomomethioninate monarch-merged.owl owl:Class CHEBI:134665 biolink:NamedThing N,N-dihydroxy-L-dihomomethioninate monarch-merged.owl owl:Class CHEBI:134667 biolink:NamedThing N,N-dihydroxy-L-trihomomethioninate monarch-merged.owl owl:Class CHEBI:134669 biolink:NamedThing N,N-dihydroxy-L-tetrahomomethioninate monarch-merged.owl owl:Class CHEBI:134671 biolink:NamedThing N,N-dihydroxy-L-pentahomomethioninate monarch-merged.owl owl:Class CHEBI:134673 biolink:NamedThing N,N-dihydroxy-L-hexahomomethioninate monarch-merged.owl owl:Class CHEBI:137029 biolink:NamedThing N,N-dihydroxy-L-tetrahomomethionine monarch-merged.owl owl:Class CHEBI:82744 biolink:NamedThing aliphatic aldoxime Any aldoxime derived from an aliphatic aldehyde. monarch-merged.owl an aliphatic aldoxime 0 CH2NOR 44.03270 44.01364 ON=C[*] MetaCyc:Aliphatic-Aldoximes chebi_ontology owl:Class CHEBI:17502 biolink:NamedThing 2-methylpropanal oxime monarch-merged.owl owl:Class CHEBI:28465 biolink:NamedThing acetaldehyde oxime monarch-merged.owl owl:Class CHEBI:50701 biolink:NamedThing 6-(methylsulfanyl)hexanal oxime monarch-merged.owl owl:Class CHEBI:50702 biolink:NamedThing 7-(methylsulfanyl)heptanal oxime monarch-merged.owl owl:Class CHEBI:50703 biolink:NamedThing 8-(methylsulfanyl)octanal oxime monarch-merged.owl owl:Class CHEBI:50704 biolink:NamedThing 9-(methylsulfanyl)nonanal oxime monarch-merged.owl owl:Class CHEBI:61134 biolink:NamedThing 2-methylbutanal oxime monarch-merged.owl owl:Class CHEBI:134681 biolink:NamedThing (E)-6-(methylsulfanyl)hexanal oxime monarch-merged.owl owl:Class CHEBI:134682 biolink:NamedThing (E)-5-(methylsulfanyl)pentanal oxime monarch-merged.owl owl:Class CHEBI:134683 biolink:NamedThing (E)-7-(methylsulfanyl)heptanal oxime monarch-merged.owl owl:Class CHEBI:134684 biolink:NamedThing (E)-8-(methylsulfanyl)octanal oxime monarch-merged.owl owl:Class CHEBI:134685 biolink:NamedThing (E)-9-(methylsulfanyl)nonanal oxime monarch-merged.owl owl:Class CHEBI:13488 biolink:NamedThing UDP-D-galacturonic acid monarch-merged.owl owl:Class CHEBI:15855 biolink:NamedThing UDP-6-sulfoquinovose monarch-merged.owl owl:Class CHEBI:15933 biolink:NamedThing UDP-D-apiose monarch-merged.owl owl:Class CHEBI:16082 biolink:NamedThing UDP-alpha-D-xylose monarch-merged.owl owl:Class CHEBI:16553 biolink:NamedThing UDP-4-dehydro-6-deoxy-D-glucose monarch-merged.owl owl:Class CHEBI:17200 biolink:NamedThing UDP-alpha-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:17683 biolink:NamedThing UDP-L-iduronic acid monarch-merged.owl owl:Class CHEBI:17983 biolink:NamedThing UDP-L-arabinose monarch-merged.owl owl:Class CHEBI:18066 biolink:NamedThing UDP-D-glucose monarch-merged.owl owl:Class CHEBI:18251 biolink:NamedThing UDP-D-galactofuranose monarch-merged.owl owl:Class CHEBI:18307 biolink:NamedThing UDP-D-galactose monarch-merged.owl owl:Class CHEBI:35262 biolink:NamedThing UDP-amino sugar monarch-merged.owl owl:Class CHEBI:47028 biolink:NamedThing UDP-beta-L-threo-pentopyranos-4-ulose monarch-merged.owl owl:Class CHEBI:48402 biolink:NamedThing UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:48403 biolink:NamedThing UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-mannuronic acid monarch-merged.owl owl:Class CHEBI:48404 biolink:NamedThing UDP-alpha-D-mannuronic acid monarch-merged.owl owl:Class CHEBI:61460 biolink:NamedThing UDP-beta-L-arabinofuranose monarch-merged.owl owl:Class CHEBI:62411 biolink:NamedThing UDP-2-acetamido-2,6-dideoxy-beta-L-talose monarch-merged.owl owl:Class CHEBI:63061 biolink:NamedThing UDP-rhamnose monarch-merged.owl owl:Class CHEBI:13497 biolink:NamedThing UDP-alpha-D-glucosamine monarch-merged.owl owl:Class CHEBI:137952 biolink:NamedThing UDP-2,3-diacyl-alpha-D-glucosamine monarch-merged.owl owl:Class CHEBI:15886 biolink:NamedThing UDP-N-acetyl-2-amino-2-deoxy-D-glucuronate monarch-merged.owl owl:Class CHEBI:16264 biolink:NamedThing UDP-N-acetyl-alpha-D-glucosamine monarch-merged.owl owl:Class CHEBI:16287 biolink:NamedThing UDP-N-acetyl-D-mannosamine monarch-merged.owl owl:Class CHEBI:16435 biolink:NamedThing UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine monarch-merged.owl owl:Class CHEBI:16549 biolink:NamedThing UDP-2-acetamido-4-amino-2,4,6-trideoxy-D-glucose monarch-merged.owl owl:Class CHEBI:16650 biolink:NamedThing UDP-N-acetyl-D-galactosamine monarch-merged.owl owl:Class CHEBI:16846 biolink:NamedThing UDP-alpha-D-galactosamine monarch-merged.owl owl:Class CHEBI:17882 biolink:NamedThing UDP-N-acetylmuramic acid monarch-merged.owl owl:Class CHEBI:22119 biolink:NamedThing UDP-N-acetylmannosaminouronic acid monarch-merged.owl owl:Class CHEBI:27392 biolink:NamedThing UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine monarch-merged.owl owl:Class CHEBI:32275 biolink:NamedThing UDP-alpha-D-kanosamine monarch-merged.owl owl:Class CHEBI:47025 biolink:NamedThing UDP-4-amino-4-deoxy-beta-L-arabinopyranose monarch-merged.owl owl:Class CHEBI:47027 biolink:NamedThing UDP-4-deoxy-4-formamido-beta-L-arabinopyranose monarch-merged.owl owl:Class CHEBI:52775 biolink:NamedThing UDP-N-acetyl-2-amino-2-deoxy-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:61537 biolink:NamedThing UDP-3-O-[(3R)-3-hydroxytetradecanoyl]-N-acetyl-alpha-glucosamine monarch-merged.owl owl:Class CHEBI:62407 biolink:NamedThing UDP-N-acetyl-beta-L-fucosamine monarch-merged.owl owl:Class CHEBI:62410 biolink:NamedThing UDP-2-acetamido-3-amino-2,3-dideoxy-alpha-D-glucuronic acid monarch-merged.owl owl:Class CHEBI:63389 biolink:NamedThing UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine(1-) monarch-merged.owl owl:Class CHEBI:63420 biolink:NamedThing UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine monarch-merged.owl owl:Class CHEBI:63422 biolink:NamedThing UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altrose monarch-merged.owl owl:Class CHEBI:64362 biolink:NamedThing UDP-N-acetyl-alpha-D-glucosamine 3-phosphate monarch-merged.owl owl:Class CHEBI:67178 biolink:NamedThing UDP-N,N'-diacetylbacillosamine monarch-merged.owl owl:Class CHEBI:68681 biolink:NamedThing UDP-N-acetyl-6-(alpha-D-galactose-1-phospho)-alpha-D-glucosamine monarch-merged.owl owl:Class CHEBI:82844 biolink:NamedThing UDP-2-acetamido-2-deoxy-3-dehydro-alpha-D-glucopyranose monarch-merged.owl owl:Class CHEBI:13534 biolink:NamedThing acyl-carrier protein monarch-merged.owl owl:Class CHEBI:36080 biolink:NamedThing protein A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome. monarch-merged.owl proteins CHEBI:14911|CHEBI:13677 chebi_ontology owl:Class CHEBI:15358 biolink:NamedThing histone monarch-merged.owl Histone KEGG:C01429|CAS:37244-51-2 CHEBI:14402|CHEBI:5734 chebi_ontology owl:Class CHEBI:33837 biolink:NamedThing conjugated protein Conjugated protein is a protein that contains a non-peptide component, usually in stoichiometric proportion. monarch-merged.owl complex protein|conjugated proteins COMe:PRX000001 chebi_ontology owl:Class CHEBI:38560 biolink:NamedThing simple protein monarch-merged.owl simple proteins chebi_ontology owl:Class PR:000000008 biolink:NamedThing TGF-beta-like cystine-knot cytokine A protein with a core domain composition consisting of a signal peptide, a variable propeptide region and a Transforming growth factor beta like domain (Pfam:PF00019), which is a cystine-knot domain containing four conserved beta strands, S1-S4, which form two antiparallel beta sheets (SI-S2 and S3-S4) interconnected by three disulfide bridges in a knot-like topology. Cystines [II-V] and [III-VI] form a ring through which the remaining disulfide bond (Cys[I-IV]) penetrates. Insertion of different variable regions into this common motif has given rise to various subclasses of the growth factor cystine-knot domain. monarch-merged.owl TGF-beta superfamily PIRSF:PIRSF800009 Category=family. protein owl:Class PR:000000019 biolink:NamedThing mitogen-activated protein kinase A protein that is a serine/threonine-specific protein kinase that responds to extracellular stimuli (mitogens) and regulates cellular activities such as gene expression, mitosis, differentiation, and cell survival/apoptosis. The activated form phosphorylates target substrates on Ser or Thr residues followed by a proline. A distinguishing feature is the conserved sequence TxY. monarch-merged.owl MAPK|kinase-related transforming protein owl:Class PR:000000028 biolink:NamedThing small GTPase A protein with a core domain composition consisting of a Ras family domain (Pfam:PF00071). The small GTPases are monomeric G-proteins which function as GDP/GTP-regulated molecular switches. monarch-merged.owl owl:Class PR:000000033 biolink:NamedThing tumor necrosis factor, TNF-like A protein with a core domain composition consisting of an N-terminal cytosolic domain, a type II transmembrane domain and a C-terminal TNF domain (Pfam:PF00229). monarch-merged.owl PIRSF:PIRSF001873 Category=family. protein owl:Class PR:000001004 biolink:NamedThing CD4 molecule A protein that is a translation product of the human CD4 gene or a 1:1 ortholog thereof. CD4 is an accessory protein for MHC class-II antigen/T-cell receptor interaction. It is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. monarch-merged.owl T-cell surface glycoprotein CD4|T-cell surface antigen T4/Leu-3|T-cell differentiation antigen L3T4|CD4 PIRSF:PIRSF001977 Category=gene. Requested by=CL. protein owl:Class PR:000001091 biolink:NamedThing interleukin-1 A protein with a core domain composition consisting of a propeptide region and an Interleukin-1 / 18 domain. monarch-merged.owl PIRSF:PIRSF001937 Category=family. protein owl:Class PR:000001092 biolink:NamedThing interleukin-17 A protein that is a T cell-derived cytokine that may play an important role in the initiation or maintenance of the proinflammatory response. Except for IL-17B, all other IL-17 family members are homodimers containing five highly conserved cysteine residues forming characteristic cystein-knot structure, similar to that found in the TGF-beta-like cystine-knot (PR:000000008). This class consists of six cytokines. Among them, interleukin 17A (IL-17) and IL-17F are expressed by a novel subset of CD4+ helper T (Th) cells and play a critical role in inflammation and autoimmunity. On the other hand, IL-17E, also called IL-25, has been associated with allergic responses. monarch-merged.owl IL17|fam:IL-17 PIRSF:PIRSF003430|PANTHER:PTHR21295 Category=family. protein owl:Class PR:000001096 biolink:NamedThing Toll-like receptor A protein with a core domain composition consisting of a signal peptide, an extracellular domain with multiple Leucine rich repeat (Pfam:PF13855) domain (LRR), a cysteine-rich region, a single-pass transmembrane domain and a C-terminal cytoplasmic tail containing a TIR domain (Pfam:PF01582). monarch-merged.owl fam:TLR owl:Class PR:000001317 biolink:NamedThing interleukin-7 A protein that is a translation product of the human IL7 gene or a 1:1 ortholog thereof. monarch-merged.owl IL7|IL-7 PIRSF:PIRSF001942 Category=gene. protein owl:Class PR:000001327 biolink:NamedThing cadherin A protein that has a core domain structure of signal sequence, propeptide, five Cadherin domains (Pfam:PF00028), a transmembrane region, and a Cadherin cytoplasmic region (Pfam:PF01049). Cadherins function as adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in solid tissues. monarch-merged.owl PIRSF:PIRSF002504 Category=family. protein owl:Class PR:000001335 biolink:NamedThing class 2 cytokine, IL-10 type A protein with a core domain architecture consisting of an N-terminal Interleukin 10 (Pfam:PF00726) domain. monarch-merged.owl PIRSF:PIRSF003542 Category=family. protein owl:Class PR:000001348 biolink:NamedThing erythrocyte membrane protein Rh A protein that is a stand alone version of the Ammonium Transporter Family domain in vertebrates. This protein is related to the ammonium transporters in fungi and bacteria. In mammals, this protein defines the Rh blood group antigens. monarch-merged.owl owl:Class PR:000001349 biolink:NamedThing fibroblast growth factor receptor A protein with an extracellular region containing three copies of the Immunoglobulin domain (Pfam:PF00047), a single transmembrane region, and an intracellular region containing a Protein tyrosine kinase domain (Pfam:PF07714). Its active form binds fibroblast growth factor (FGF). FGFs and its receptor comprise a signaling system that is conserved throughout metazoan evolution. monarch-merged.owl owl:Class PR:000001353 biolink:NamedThing granulocyte colony-stimulating factor receptor A protein that is a translation product of the human CSF3R gene or a 1:1 ortholog thereof. The active receptor is a homodimer which can bind G-CSF and transduce G-CSF-triggered growth signals into cells. Its extracellular domain contains a sequence of about 200 amino acids which can be found in various cytokine receptors. In addition, it contains an immunoglobulin-like domain and three fibronectin type III domains. monarch-merged.owl GCSFR|Csfgr|G-CSF-R|CD114|G-CSF receptor|CSF3R owl:Class PR:000001357 biolink:NamedThing intercellular adhesion molecule 1/3 A protein with a core domain architecture consisting of an Intercellular adhesion molecule (ICAM), N-terminal domain (Pfam:PF03921), a type of Ig-like domain, and four copies of the Immunoglobulin domain (Pfam:PF00047), most of which are not detected by Pfam. monarch-merged.owl ICAM owl:Class PR:000001366 biolink:NamedThing interleukin-11 A protein that is a translation product of the human IL11 gene or a 1:1 ortholog thereof. monarch-merged.owl adipogenesis inhibitory factor|oprelvekin|IL-11|AGIF|IL11 owl:Class PR:000001368 biolink:NamedThing interleukin-12 subunit alpha A protein that is a translation product of the human IL12A gene or a 1:1 ortholog thereof. It associates with interleukin-12 subunit beta to form the interleukin-23. Interleukin-12 subunit alpha associates with interleukin-27 subunit beta to form the interleukin-35. monarch-merged.owl NKSF1|IL-12A|IL-12 subunit p35|CLMF p35|IL12A|cytotoxic lymphocyte maturation factor 35 kDa subunit|NK cell stimulatory factor chain 1 PIRSF:PIRSF037684 Category=gene. protein owl:Class PR:000001369 biolink:NamedThing interleukin-12 subunit beta A protein that is a translation product of the human IL12B gene or a 1:1 ortholog thereof. Interleukin-12 subunit beta associates with interleukin-12 subunit alpha or interleukin-23 subunit alpha to form the interleukin-23. monarch-merged.owl CLMF p40|IL-12 subunit p40|IL12B|NKSF2|IL-12B|NK cell stimulatory factor chain 2|cytotoxic lymphocyte maturation factor 40 kDa subunit PIRSF:PIRSF038007|PANTHER:PTHR11321:SF0 Category=gene. protein owl:Class PR:000001370 biolink:NamedThing interleukin-13 A protein that is a translation product of the human IL13 gene or a 1:1 ortholog thereof. Interleukin-13 is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related. monarch-merged.owl IL-13|NC30|IL13|T-cell activation protein P600 PANTHER:PTHR11322|PIRSF:PIRSF001945 Category=gene. protein owl:Class PR:000001373 biolink:NamedThing interleukin-15 A protein that is a translation product of the human IL15 gene or a 1:1 ortholog thereof. monarch-merged.owl IL15|IL-15 PIRSF:PIRSF001946 Category=gene. protein owl:Class PR:000001374 biolink:NamedThing interleukin-16 A protein that is a translation product of the human IL16 gene or a 1:1 ortholog thereof. monarch-merged.owl IL16 PIRSF:PIRSF038750 Category=gene. protein owl:Class PR:000001376 biolink:NamedThing interleukin-18 A protein that is a translation product of the human IL18 gene or a 1:1 ortholog thereof. monarch-merged.owl interferon gamma-inducing factor|IL1F4|IFN-gamma-inducing factor|IL-1 gamma|interleukin-1 gamma|IL-18|IL18|iboctadekin|IGIF PIRSF:PIRSF015162 Category=gene. protein owl:Class PR:000001379 biolink:NamedThing interleukin-2 A protein that is a translation product of the human IL2 gene or a 1:1 ortholog thereof. Interleukin-2 has a dual role in maintaining tolerance and contributing to immunity. monarch-merged.owl aldesleukin|TCGF|IL2|T-cell growth factor|IL-2 PIRSF:PIRSF001938 Category=gene. protein owl:Class PR:000001382 biolink:NamedThing interleukin-21 A protein that is a translation product of the human IL21 gene or a 1:1 ortholog thereof. monarch-merged.owl IL-21|IL21|Za11 PIRSF:PIRSF038753 Category=gene. protein owl:Class PR:000001383 biolink:NamedThing interleukin-22 A protein that is a translation product of the human IL22 gene or a 1:1 ortholog thereof. monarch-merged.owl IL-TIF alpha|Il22a|IL-22|interleukin-22a|IL22|IL-22a|cytokine Zcyto18|ZCYTO18|IL-10-related T-cell-derived-inducible factor|Iltifa|ILTIF|IL-TIF owl:Class PR:000001387 biolink:NamedThing interleukin-3 A protein that is a translation product of the human IL3 gene or a 1:1 ortholog thereof. monarch-merged.owl hematopoietic growth factor|mast cell growth factor|multipotential colony-stimulating factor|IL3|Csfmu|IL-3|P-cell-stimulating factor|MCGF PIRSF:PIRSF001939 Category=gene. protein owl:Class PR:000001389 biolink:NamedThing interleukin-33 A protein that is a translation product of the human IL33 gene or a 1:1 ortholog thereof. monarch-merged.owl IL33|NFHEV|IL-33|C9orf26|IL1F11|NF-HEV|interleukin-1 family member 11|nuclear factor from high endothelial venules|IL-1F11 owl:Class PR:000001391 biolink:NamedThing interleukin-4 A protein that is a translation product of the human IL4 gene or a 1:1 ortholog thereof. monarch-merged.owl BSF-1|IGG1 induction factor|lymphocyte stimulatory factor 1|B-cell growth factor 1|IL-4|IL4|binetrakin|pitrakinra|B-cell stimulatory factor 1|B-cell IgG differentiation factor PIRSF:PIRSF001941 Category=gene. protein owl:Class PR:000001392 biolink:NamedThing interleukin-5 A protein that is a translation product of the human IL5 gene or a 1:1 ortholog thereof. monarch-merged.owl BCGF-II|IL5|IL-5|T-cell replacing factor|B-cell growth factor II|TRF|B-cell differentiation factor I|cytotoxic T-lymphocyte inducer|eosinophil differentiation factor PIRSF:PIRSF001940 Category=gene. protein owl:Class PR:000001393 biolink:NamedThing interleukin-6 A protein that is a translation product of the human IL6 gene or a 1:1 ortholog thereof. monarch-merged.owl interferon beta-2|CTL differentiation factor|hybridoma growth factor|interleukin HP-1|IFNB2|IL6|IFN-beta-2|BSF-2|IL-6|B-cell hybridoma growth factor|CDF|B-cell stimulatory factor 2 PIRSF:PIRSF001935 Category=gene. protein owl:Class PR:000001395 biolink:NamedThing interleukin-8 A protein that is a translation product of the human CXCL8 gene or a 1:1 ortholog thereof. monarch-merged.owl protein 3-10C|T-cell chemotactic factor|IL8|emoctakin|C-X-C motif chemokine 8|monocyte-derived neutrophil chemotactic factor|neutrophil-activating protein 1|MONAP|IL-8|granulocyte chemotactic protein 1|CXCL8|MDNCF|NAP-1|monocyte-derived neutrophil-activating peptide|GCP-1 PIRSF:PIRSF500564 Category=gene. protein owl:Class PR:000001396 biolink:NamedThing interleukin-9 A protein that is a translation product of the human IL9 gene or a 1:1 ortholog thereof. monarch-merged.owl cytokine P40|T-cell growth factor P40|IL-9|IL9 PIRSF:PIRSF001943 Category=gene. protein owl:Class PR:000001397 biolink:NamedThing interleukin-9 receptor A protein that is a translation product of the human IL9R gene or a 1:1 ortholog thereof. monarch-merged.owl IL-9R|IL9R|CD129|IL-9 receptor owl:Class PR:000001753 biolink:NamedThing transcription factor NF-kappa-B subunit A protein with a core domain composition consisting of a Rel homology domain (RHD) (Pfam:PF00554), an IPT/TIG domain (Pfam:PF01833), six copies of the Ankyrin repeat (Pfam:PF00023), a Death domain (Pfam:PF00531) and a C-terminal PEST region. monarch-merged.owl transcription factor NF-kappa-B owl:Class PR:000001808 biolink:NamedThing C/C-C motif small inducible chemokine A protein with core architecture consisting of a Small cytokines (intecrine/chemokine), interleukin-8 like (Pfam:PF00048) domain. monarch-merged.owl fam:C/C-C chemokine owl:Class PR:000001810 biolink:NamedThing CSF-1/PDGF receptor-type tyrosine-protein kinase A protein with core architecture consisting of asignal sequence, 5 Ig-like domains, followed by a transmembrane sequence, followed by a Protein tyrosine kinase domain (Pfam:PF07714). However, only 1-3 of the Ig domains are detected by the Pfam HMMs in most of the sequences. Pfam:PF00047 is most common, but other members of the Ig domain clan, Pfam:PF07679 and Pfam:PF07686 can be identified instead. The fourth Ig domain lacks the disulfide-bonded cysteines. monarch-merged.owl owl:Class PR:000001812 biolink:NamedThing EGF receptor type tyrosine-protein kinase A protein with core architecture consisting of a signal sequence, a Receptor L domain (Pfam:PF01030), a Furin-like cysteine rich region (Pfam:PF00757), another Receptor L domain, a transmembrane domain, and a Protein tyrosine kinase domain (Pfam:PF07714), that may be followed by up to two YLP motifs (Pfam:PF02757). monarch-merged.owl owl:Class PR:000001816 biolink:NamedThing HGF/MSP receptor type tyrosine-protein kinase A protein with core architecture consisting of a signal sequence, followed by a Sema domain (Pfam:PF01403), three IPT/TIG domains (Pfam:PF01833), a transmembrane region, and a Protein tyrosine kinase domain (Pfam:PF07714). monarch-merged.owl owl:Class PR:000001855 biolink:NamedThing fractalkine A protein that is a translation product of the human CX3CL1 gene or a 1:1 ortholog thereof. monarch-merged.owl C-X3-C motif chemokine 1|small-inducible cytokine D1|CX3CL1|NTT|SCYD1|CX3C membrane-anchored chemokine|FKN|Cx3c|neurotactin owl:Class PR:000001876 biolink:NamedThing leukemia inhibitory factor receptor A protein that is a translation product of the human LIFR gene or a 1:1 ortholog thereof. monarch-merged.owl D-factor/LIF receptor|LIF-R|LIF receptor|LIFR|CD118 owl:Class PR:000001887 biolink:NamedThing melanotransferrin A protein that is a translation product of the human MELTF gene or a 1:1 ortholog thereof. monarch-merged.owl MELTF|MTf|MFI2|CD228|membrane-bound transferrin-like protein p97|MAP97|melanoma-associated antigen p97 owl:Class PR:000001902 biolink:NamedThing nuclear receptor ROR-gamma A protein that is a translation product of the human RORC gene or a 1:1 ortholog thereof. monarch-merged.owl thymus orphan receptor|RZRG|nuclear receptor RZR-gamma|NR1F3|Thor|retinoid-related orphan receptor-gamma|RORC|TOR|nuclear receptor subfamily 1 group F member 3|RORG owl:Class PR:000001926 biolink:NamedThing semaphorin A protein with core architecture consisting of a signal sequence,a Sema domain (Pfam:PF01403), a Plexin repeat (Pfam:PF01437), and an Ig-like domain (Pfam:PF00047, Pfam:PF07686, or Pfam:PF07679). monarch-merged.owl owl:Class PR:000001946 biolink:NamedThing tumor necrosis factor ligand superfamily member 10/11 A protein with core architecture consisting of a fairly small cytoplasmic region, a transmembrane domain, and an extracellular domain containing a TNF(Tumour Necrosis Factor) family domain (Pfam:PF00229). monarch-merged.owl owl:Class PR:000001971 biolink:NamedThing vascular endothelial growth factor receptor A protein with core architecture consisting of a signal sequence, followed by 7 Ig-like domains (Pfam:PF00047, Pfam:PF07679, or Pfam:PF07686), a transmembrane region, and a cytoplasmic Protein tyrosine kinase domain. monarch-merged.owl PIRSF:PIRSF038502 Category=family. protein owl:Class PR:000002198 biolink:NamedThing catenin beta-1 A protein that is a translation product of the human CTNNB1 gene or a 1:1 ortholog thereof. monarch-merged.owl Catnb|CTNNB|beta-catenin|CTNNB1 owl:Class PR:000002201 biolink:NamedThing dynein light chain A protein that is a translation product of the human DYNLL1 or DYNLL2 genes, or 1:1 orthologs thereof. The protein is small (89 residues in human and mouse) with core architecture consisting of a Dynein light chain type 1 domain (Pfam:PF01221). monarch-merged.owl owl:Class PR:000003035 biolink:NamedThing cellular tumor antigen p53 A protein that is a translation product of the human TP53 gene or a 1:1 ortholog thereof. monarch-merged.owl antigen NY-CO-13|TP53|tumor suppressor p53|Trp53|phosphoprotein p53|P53 owl:Class PR:000003112 biolink:NamedThing NFAT protein A protein that contains a Rel homology domain (RHD) (Pfam:PF00554) followed by an IPT/TIG domain (Pfam:PF01833). monarch-merged.owl owl:Class PR:000003171 biolink:NamedThing IGFBP-related protein monarch-merged.owl owl:Class PR:000003237 biolink:NamedThing 14-3-3 protein A protein that is a stand alone version of the 14-3-3 protein (Pfam:PF00244) domain. monarch-merged.owl owl:Class PR:000003425 biolink:NamedThing Hsp70 family chaperone A protein that is a stand alone version of the Hsp70 protein (Pfam:PF00012) domain, which comprises two major regions: an N-terminal ATP-binding domain and a C-terminal substrate-binding domain. monarch-merged.owl owl:Class PR:000003652 biolink:NamedThing acrosin A protein that is a translation product of the human ACR gene or a 1:1 ortholog thereof. monarch-merged.owl ACRS|ACR owl:Class PR:000003761 biolink:NamedThing pituitary adenylate cyclase-activating polypeptide A protein that is a translation product of the human ADCYAP1 gene or a 1:1 ortholog thereof. monarch-merged.owl PACAP|ADCYAP1 owl:Class PR:000003777 biolink:NamedThing adiponectin A protein that is a translation product of the human ADIPOQ gene or a 1:1 ortholog thereof. monarch-merged.owl ACDC|apM-1|adipocyte, C1q and collagen domain-containing protein|30 kDa adipocyte complement-related protein|adipocyte complement-related 30 kDa protein|gelatin-binding protein|adipocyte-specific protein AdipoQ|ADIPOQ|adipose most abundant gene transcript 1 protein|GBP28|APM1|ACRP30 Category=gene. protein owl:Class PR:000003858 biolink:NamedThing aryl hydrocarbon receptor A protein that is a translation product of the human AHR gene or a 1:1 ortholog thereof. monarch-merged.owl Ah receptor|bHLHe76|AHR|class E basic helix-loop-helix protein 76|AhR owl:Class PR:000004126 biolink:NamedThing serum amyloid P-component A protein that is a translation product of the human APCS gene or a 1:1 ortholog thereof. monarch-merged.owl 9.5S alpha-1-glycoprotein|APCS|PTX2|SAP owl:Class PR:000004135 biolink:NamedThing apelin A protein that is a translation product of the human APLN gene or a 1:1 ortholog thereof. monarch-merged.owl APEL|APLN|APJ endogenous ligand owl:Class PR:000004140 biolink:NamedThing apolipoprotein A-I A protein that is a translation product of the human APOA1 gene or a 1:1 ortholog thereof. monarch-merged.owl APOA1|apo-AI|ApoA-I|apolipoprotein A1 owl:Class PR:000004168 biolink:NamedThing amyloid-beta precursor protein A protein that is a translation product of the human APP gene or a 1:1 ortholog thereof. monarch-merged.owl APP|ABPP|CVAP|APPI|AG|PN-II|AD1|cerebral vascular amyloid peptide|amyloidogenic glycoprotein|protease nexin-II|A4|amyloid-beta A4 protein|alzheimer disease amyloid A4 protein homolog|amyloid beta A4 protein|alzheimer disease amyloid protein|PreA4 owl:Class PR:000004191 biolink:NamedThing androgen receptor A protein that is a translation product of the human AR gene or a 1:1 ortholog thereof. monarch-merged.owl AR|DHTR|dihydrotestosterone receptor|nuclear receptor subfamily 3 group C member 4|NR3C4 owl:Class PR:000004580 biolink:NamedThing beta-2-microglobulin A protein that is a translation product of the human B2M gene or a 1:1 ortholog thereof. monarch-merged.owl B2M owl:Class PR:000004978 biolink:NamedThing calmodulin A protein that is a translation product of the human CALM1, CALM2, or CALM3 genes, 1:1 orthologs thereof, or a semi-ortholog thereof. monarch-merged.owl CaM|CALML2|CAMC|CAMIII|CAM3|CALM owl:Class PR:000005110 biolink:NamedThing cholecystokinin A protein that is a translation product of the human CCK gene or a 1:1 ortholog thereof. monarch-merged.owl CCK owl:Class PR:000005388 biolink:NamedThing glycoprotein hormones alpha chain A protein that is a translation product of the human CGA gene or a 1:1 ortholog thereof. monarch-merged.owl follitropin alpha chain|lutropin alpha chain|chorionic gonadotrophin subunit alpha|anterior pituitary glycoprotein hormones common subunit alpha|luteinizing hormone alpha chain|follicle-stimulating hormone alpha chain|CGA|thyroid-stimulating hormone alpha chain|CG-alpha|choriogonadotropin alpha chain|LSH-alpha|FSH-alpha|thyrotropin alpha chain|TSH-alpha owl:Class PR:000005663 biolink:NamedThing ciliary neurotrophic factor A protein that is a translation product of the human CNTF gene or a 1:1 ortholog thereof. monarch-merged.owl CNTF owl:Class PR:000005931 biolink:NamedThing granulocyte-macrophage colony-stimulating factor A protein that is a translation product of the human CSF2 gene or a 1:1 ortholog thereof. monarch-merged.owl colony-stimulating factor|Csfgm|sargramostim|GMCSF|CSF2|molgramostin|GM-CSF|CSF owl:Class PR:000005932 biolink:NamedThing granulocyte colony-stimulating factor A protein that is a translation product of the human CSF3 gene or a 1:1 ortholog thereof. monarch-merged.owl pluripoietin|GCSF|CSF3|filgrastim|Csfg|G-CSF|lenograstim owl:Class PR:000006013 biolink:NamedThing catenin delta-2 A protein that is a translation product of the human CTNND2 gene or a 1:1 ortholog thereof. monarch-merged.owl neural plakophilin-related ARM-repeat protein|neurojungin|delta-catenin|GT24|Catnd2|NPRAP|CTNND2 owl:Class PR:000006267 biolink:NamedThing dystroglycan A protein that is a translation product of the human DAG1 gene or a 1:1 ortholog thereof. monarch-merged.owl DAG1|Dag-1|dystrophin-associated glycoprotein 1 owl:Class PR:000006909 biolink:NamedThing elongation factor 2 A protein that is a translation product of the human EEF2 gene or a 1:1 ortholog thereof. monarch-merged.owl EF2|EEF2|EF-2 owl:Class PR:000006928 biolink:NamedThing pro-epidermal growth factor A protein that is a translation product of the human EGF gene or a 1:1 ortholog thereof. monarch-merged.owl EGF owl:Class PR:000006990 biolink:NamedThing eukaryotic translation initiation factor 4E A protein that is a translation product of the human EIF4E gene or a 1:1 ortholog thereof. monarch-merged.owl eIF-4E|eIF-4F 25 kDa subunit|EIF4EL1|EIF4F|eIF4E|mRNA cap-binding protein|EIF4E owl:Class PR:000007141 biolink:NamedThing erythropoietin A protein that is a translation product of the human EPO gene or a 1:1 ortholog thereof. monarch-merged.owl EPO|epoetin Category=gene. protein owl:Class PR:000007142 biolink:NamedThing erythropoietin receptor A protein that is a translation product of the human EPOR gene or a 1:1 ortholog thereof. monarch-merged.owl EPO-R|EPOR owl:Class PR:000007204 biolink:NamedThing estrogen receptor A protein that is a translation product of the human ESR1 gene or a 1:1 ortholog thereof. monarch-merged.owl estradiol receptor|ER|nuclear receptor subfamily 3 group A member 1|NR3A1|Estra|ESR1|ER-alpha|ESR|Estr owl:Class PR:000007494 biolink:NamedThing fibroblast growth factor 3 A protein that is a translation product of the human FGF3 gene or a 1:1 ortholog thereof. monarch-merged.owl HBGF-3|FGF3|proto-oncogene Int-2|Int-2|FGF-3|INT2|INT-2 proto-oncogene protein|heparin-binding growth factor 3 owl:Class PR:000007495 biolink:NamedThing fibroblast growth factor 4 A protein that is a translation product of the human FGF4 gene or a 1:1 ortholog thereof. monarch-merged.owl FGF-4|transforming protein KS3|KS3|heparin secretory-transforming protein 1|K-fibroblast growth factor|HBGF-4|HST|HSTF1|HSTF-1|Kfgf|HST-1|FGF4|heparin-binding growth factor 4 owl:Class PR:000007496 biolink:NamedThing fibroblast growth factor 5 A protein that is a translation product of the human FGF5 gene or a 1:1 ortholog thereof. monarch-merged.owl HBGF-5|Smag-82|FGF-5|heparin-binding growth factor 5|FGF5 owl:Class PR:000007497 biolink:NamedThing fibroblast growth factor 6 A protein that is a translation product of the human FGF6 gene or a 1:1 ortholog thereof. monarch-merged.owl HBGF-6|heparin secretory-transforming protein 2|HSTF2|HST2|FGF6|HST-2|FGF-6|heparin-binding growth factor 6|HSTF-2 owl:Class PR:000007555 biolink:NamedThing filamin-A A protein that is a translation product of the human FLNA gene or a 1:1 ortholog thereof. monarch-merged.owl ABP-280|endothelial actin-binding protein|actin-binding protein 280|FLN-A|non-muscle filamin|FLNA|FLN|filamin-1|alpha-filamin|FLN1 owl:Class PR:000007556 biolink:NamedThing filamin-B A protein that is a translation product of the human FLNB gene or a 1:1 ortholog thereof. monarch-merged.owl filamin-3|TAP|filamin homolog 1|ABP-280 homolog|truncated actin-binding protein|thyroid autoantigen|beta-filamin|FLN3|FLN1L|actin-binding-like protein|FLNB|ABP-280-like protein|TABP|FLN-B|ABP-278|truncated ABP|Fh1 owl:Class PR:000007557 biolink:NamedThing filamin-C A protein that is a translation product of the human FLNC gene or a 1:1 ortholog thereof. monarch-merged.owl FLN2|FLNc|actin-binding-like protein|FLN-C|filamin-2|ABP-L|gamma-filamin|ABP-280-like protein|ABPL|FLNC owl:Class PR:000007581 biolink:NamedThing fibronectin A protein that is a translation product of the human FN1 gene or a 1:1 ortholog thereof. monarch-merged.owl cold-insoluble globulin|CIG|FN|FN1 owl:Class PR:000007806 biolink:NamedThing galanin A protein that is a translation product of the human GAL gene or a 1:1 ortholog thereof. monarch-merged.owl GALN|GAL1|GLNN|GAL owl:Class PR:000007856 biolink:NamedThing gastrin A protein that is a translation product of the human GAST gene or a 1:1 ortholog thereof. monarch-merged.owl GAST|GAS Category=gene. protein owl:Class PR:000007893 biolink:NamedThing GTP cyclohydrolase 1 A protein that is a translation product of the human GCH1 gene or a 1:1 ortholog thereof. monarch-merged.owl GCH1|GTP cyclohydrolase I|GTP-CH-I|GCH|DYT5 owl:Class PR:000007928 biolink:NamedThing glial cell line-derived neurotrophic factor A protein that is a translation product of the human GDNF gene or a 1:1 ortholog thereof. monarch-merged.owl GDNF|ATF|astrocyte-derived trophic factor owl:Class PR:000007970 biolink:NamedThing growth hormone receptor A protein that is a translation product of the human GHR gene or a 1:1 ortholog thereof. monarch-merged.owl GHR|somatotropin receptor|GH receptor owl:Class PR:000007971 biolink:NamedThing somatoliberin A protein that is a translation product of the human GHRH gene or a 1:1 ortholog thereof. monarch-merged.owl GHRH|somatorelin|GHRF|somatocrinin|growth hormone-releasing hormone|sermorelin|GRF|growth hormone-releasing factor owl:Class PR:000007973 biolink:NamedThing appetite-regulating hormone A protein that is a translation product of the human GHRL gene or a 1:1 ortholog thereof. monarch-merged.owl GHRL|motilin-related peptide|growth hormone-releasing peptide|MTLRP|protein M46|growth hormone secretagogue owl:Class PR:000008476 biolink:NamedThing orexin A protein that is a translation product of the human HCRT gene or a 1:1 ortholog thereof. monarch-merged.owl PPORX|PPOX|OX|Hcrt|hypocretin|HCRT owl:Class PR:000008534 biolink:NamedThing hepatocyte growth factor A protein that is a translation product of the human HGF gene or a 1:1 ortholog thereof. monarch-merged.owl scatter factor|HGF|HPTA|hepatopoeitin-A|SF owl:Class PR:000008630 biolink:NamedThing high mobility group protein B1 A protein that is a translation product of the human HMGB1 gene or a 1:1 ortholog thereof. monarch-merged.owl HMGB1|high mobility group protein 1|HMG-1|HMG1 owl:Class PR:000008636 biolink:NamedThing 3-hydroxy-3-methylglutaryl-coenzyme A reductase A protein that is a translation product of the human HMGCR gene or a 1:1 ortholog thereof. monarch-merged.owl HMG-CoA reductase|HMGCR owl:Class PR:000008725 biolink:NamedThing haptoglobin A protein that is a translation product of the human HP gene or a 1:1 ortholog thereof. monarch-merged.owl HP owl:Class PR:000008875 biolink:NamedThing islet amyloid polypeptide A protein that is a translation product of the human IAPP gene or a 1:1 ortholog thereof. monarch-merged.owl diabetes-associated peptide|DAP|insulinoma amyloid peptide|amylin|IAPP owl:Class PR:000008878 biolink:NamedThing bone sialoprotein 2 A protein that is a translation product of the human IBSP gene or a 1:1 ortholog thereof. monarch-merged.owl bone sialoprotein II|IBSP|cell-binding sialoprotein|BNSP|integrin-binding sialoprotein|BSP II owl:Class PR:000008888 biolink:NamedThing isocitrate dehydrogenase [NADP], mitochondrial A protein that is a translation product of the human IDH2 gene or a 1:1 ortholog thereof. monarch-merged.owl ICD-M|NADP(+)-specific ICDH|oxalosuccinate decarboxylase|IDP|IDH|IDH2nadp owl:Class PR:000008910 biolink:NamedThing interferon-induced helicase C domain-containing protein 1 A protein that is a translation product of the human IFIH1 gene or a 1:1 ortholog thereof. monarch-merged.owl melanoma differentiation-associated protein 5|MDA-5|murabutide down-regulated protein|helicard|RNA helicase-DEAD box protein 116|interferon-induced with helicase C domain protein 1|IFIH1|interferon induced with helicase C domain protein 1|MDA5|helicase with 2 CARD domains|RH116 owl:Class PR:000008942 biolink:NamedThing insulin-like growth factor II A protein that is a translation product of the human IGF2 gene or a 1:1 ortholog thereof. monarch-merged.owl multiplication-stimulating polypeptide|IGF-II|Igf-2|somatomedin-A|IGF2 owl:Class PR:000008998 biolink:NamedThing interleukin-21 receptor A protein that is a translation product of the human IL21R gene or a 1:1 ortholog thereof. monarch-merged.owl LR-beta|NR8|novel cytokine receptor 8|NILR|IL21R|CD360|lymphocyte receptor beta|IL-21R|IL-21 receptor|novel interleukin receptor owl:Class PR:000009001 biolink:NamedThing interleukin-23 receptor A protein that is a translation product of the human IL23R gene or a 1:1 ortholog thereof. monarch-merged.owl IL23R|IL-23 receptor|IL-23R owl:Class PR:000009064 biolink:NamedThing insulin receptor A protein that is a translation product of the human INSR gene or a 1:1 ortholog thereof. monarch-merged.owl IR|CD220|INSR owl:Class PR:000009182 biolink:NamedThing insulin-like growth factor I A protein that is a translation product of the human IGF1 gene or a 1:1 ortholog thereof. monarch-merged.owl Igf-1|somatomedin|IBP1|IGF1|MGF|somatomedin-C|mechano growth factor|IGF-I Category=gene. protein owl:Class PR:000009345 biolink:NamedThing kit ligand A protein that is a translation product of the human KITLG gene or a 1:1 ortholog thereof. monarch-merged.owl Sl|Slf|steel factor|stem cell factor|mast cell growth factor|KITLG|Kitl|SCF|hematopoietic growth factor KL|MGF|c-Kit ligand owl:Class PR:000009744 biolink:NamedThing low-density lipoprotein receptor A protein that is a translation product of the human LDLR gene or a 1:1 ortholog thereof. monarch-merged.owl LDLR|LDL receptor owl:Class PR:000009799 biolink:NamedThing leukemia inhibitory factor A protein that is a translation product of the human LIF gene or a 1:1 ortholog thereof. monarch-merged.owl HILDA|MLPLI|emfilermin|melanoma-derived LPL inhibitor|D factor|LIF|differentiation-stimulating factor owl:Class PR:000009978 biolink:NamedThing lactotransferrin A protein that is a translation product of the human LTF gene or a 1:1 ortholog thereof. monarch-merged.owl talalactoferrin|LTF|lactoferrin|LF owl:Class PR:000010413 biolink:NamedThing macrophage migration inhibitory factor A protein that is a translation product of the human MIF gene or a 1:1 ortholog thereof. monarch-merged.owl L-dopachrome isomerase|GLIF|MMIF|phenylpyruvate tautomerase|DER6|L-dopachrome tautomerase|MIF|delayed early response protein 6|GIF|glycosylation-inhibiting factor owl:Class PR:000010444 biolink:NamedThing mitogen-activated protein kinase kinase kinase 21 A protein that is a translation product of the human MAP3K21 gene or a 1:1 ortholog thereof. monarch-merged.owl MLK4|mixed lineage kinase 4|mitogen-activated protein kinase kinase kinase MLK4|MAP3K21 owl:Class PR:000010818 biolink:NamedThing myogenic factor 5 A protein that is a translation product of the human MYF5 gene or a 1:1 ortholog thereof. monarch-merged.owl bHLHc2|class C basic helix-loop-helix protein 2|MYF5|Myf-5 owl:Class PR:000010855 biolink:NamedThing myosin-Ia A protein that is a translation product of the human MYO1A gene or a 1:1 ortholog thereof. monarch-merged.owl MIHC|MYHL|myosin I heavy chain|brush border myosin I|BBM-I|MYO1A|BBMI owl:Class PR:000010877 biolink:NamedThing myogenin A protein that is a translation product of the human MYOG gene or a 1:1 ortholog thereof. monarch-merged.owl MYOD1-related protein|myogenic factor 4|MYOG|MYF4|class C basic helix-loop-helix protein 3|Myf-4|bHLHc3 owl:Class PR:000010882 biolink:NamedThing myozenin-1 A protein that is a translation product of the human MYOZ1 gene or a 1:1 ortholog thereof. monarch-merged.owl calsarcin-2|MYOZ|MYOZ1|protein FATZ|filamin-, actinin- and telethonin-binding protein owl:Class PR:000011116 biolink:NamedThing NEDD8 protein A protein that is a translation product of the human NEDD8 gene or a 1:1 ortholog thereof. monarch-merged.owl neural precursor cell expressed developmentally down-regulated protein 8|neddylin|NEDD-8|ubiquitin-like protein Nedd8|NEDD8 owl:Class PR:000011164 biolink:NamedThing nuclear factor of activated T-cells, cytoplasmic 2 A protein that is a translation product of the human NFATC2 gene or a 1:1 ortholog thereof. monarch-merged.owl NFATP|NF-ATp|NFAT pre-existing subunit|T-cell transcription factor NFAT1|NFAT1|NFATc2|NFATC2|NF-ATc2 owl:Class PR:000011166 biolink:NamedThing nuclear factor of activated T-cells, cytoplasmic 3 A protein that is a translation product of the human NFATC3 gene or a 1:1 ortholog thereof. monarch-merged.owl NFATC3|NF-ATc3|T-cell transcription factor NFAT4|NFAT4|NFATc3|NFATx|NF-AT4 owl:Class PR:000011167 biolink:NamedThing nuclear factor of activated T-cells, cytoplasmic 4 A protein that is a translation product of the human NFATC4 gene or a 1:1 ortholog thereof. monarch-merged.owl NF-ATc4|NFAT3|NF-AT3|T-cell transcription factor NFAT3|NFATC4|NFATc4 owl:Class PR:000011374 biolink:NamedThing atrial natriuretic factor A protein that is a translation product of the human NPPA gene or a 1:1 ortholog thereof. monarch-merged.owl NPPA|atrial natriuretic peptide prohormone|CDD|CDD-ANF|proANF|proANP|atriopeptigen|prepronatriodilatin|ANP|preproANP|atrial natriuretic peptide|atrial natriuretic factor prohormone|preproCDD-ANF|cardiodilatin|PND|ANF Category=gene. protein owl:Class PR:000011387 biolink:NamedThing neuropeptide Y A protein that is a translation product of the human NPY gene or a 1:1 ortholog thereof. monarch-merged.owl NPY owl:Class PR:000011406 biolink:NamedThing glucocorticoid receptor A protein that is a translation product of the human NR3C1 gene or a 1:1 ortholog thereof. monarch-merged.owl NR3C1|GRL|Grl1|GR|nuclear receptor subfamily 3 group C member 1 owl:Class PR:000011407 biolink:NamedThing mineralocorticoid receptor A protein that is a translation product of the human NR3C2 gene or a 1:1 ortholog thereof. monarch-merged.owl nuclear receptor subfamily 3 group C member 2|MLR|NR3C2|MR|MCR owl:Class PR:000012059 biolink:NamedThing oncostatin-M A protein that is a translation product of the human OSM gene or a 1:1 ortholog thereof. monarch-merged.owl OSM owl:Class PR:000012421 biolink:NamedThing proliferating cell nuclear antigen A protein that is a translation product of the human PCNA gene or a 1:1 ortholog thereof. monarch-merged.owl cyclin|PCNA owl:Class PR:000012621 biolink:NamedThing progesterone receptor A protein that is a translation product of the human PGR gene or a 1:1 ortholog thereof. monarch-merged.owl PGR|NR3C3|PR|nuclear receptor subfamily 3 group C member 3 owl:Class PR:000012705 biolink:NamedThing polymeric immunoglobulin receptor A protein that is a translation product of the human PIGR gene or a 1:1 ortholog thereof. monarch-merged.owl hepatocellular carcinoma-associated protein TB6|poly-Ig receptor|PIgR|PIGR owl:Class PR:000012826 biolink:NamedThing urokinase-type plasminogen activator A protein that is a translation product of the human PLAU gene or a 1:1 ortholog thereof. monarch-merged.owl PLAU|U-plasminogen activator|uPA owl:Class PR:000013164 biolink:NamedThing pancreatic prohormone A protein that is a translation product of the human PPY gene or a 1:1 ortholog thereof. monarch-merged.owl PPY|obinepitide|PNP|PP|pancreatic polypeptide Category=gene. protein owl:Class PR:000013248 biolink:NamedThing prolactin receptor A protein that is a translation product of the human PRLR gene or a 1:1 ortholog thereof. monarch-merged.owl PRLR|PRL-R owl:Class PR:000013429 biolink:NamedThing parathyroid hormone A protein that is a translation product of the human PTH gene or a 1:1 ortholog thereof. monarch-merged.owl parathormone|parathyrin|PTH Category=gene. protein owl:Class PR:000013526 biolink:NamedThing peptide YY A protein that is a translation product of the human PYY gene or a 1:1 ortholog thereof. monarch-merged.owl PYY|peptide tyrosine tyrosine|PYY-I owl:Class PR:000013743 biolink:NamedThing Ras GTPase-activating protein 1 A protein that is a translation product of the human RASA1 gene or a 1:1 ortholog thereof. monarch-merged.owl RasGAP|RASA|p120GAP|ras p21 protein activator|GAP|RASA1|GTPase-activating protein owl:Class PR:000013883 biolink:NamedThing renin A protein that is a translation product of the human REN gene or a 1:1 ortholog thereof.|An angiotensinogenase that is a translation product of the human REN gene or a 1:1 ortholog thereof. monarch-merged.owl angiotensinogenase|REN IUPHARobj:2413 Category=gene. protein owl:Class PR:000014271 biolink:NamedThing ubiquitin-40S ribosomal protein S27a A protein that is a translation product of the human RPS27A gene or a 1:1 ortholog thereof. monarch-merged.owl 40S ribosomal protein S27a|UBCEP1|RPS27A|UBA80 owl:Class PR:000014543 biolink:NamedThing secretin A protein that is a translation product of the human SCT gene or a 1:1 ortholog thereof. monarch-merged.owl SCT owl:Class PR:000014717 biolink:NamedThing protein SET A protein that is a translation product of the human SET gene or a 1:1 ortholog thereof. monarch-merged.owl template-activating factor I|TAF-I|HLA-DR-associated protein II|phosphatase 2A inhibitor I2PP2A|I-2PP2A|inhibitor of granzyme A-activated DNase|SET|IGAAD|PHAPII owl:Class PR:000015794 biolink:NamedThing syntaxin-2 A protein that is a translation product of the human STX2 gene or a 1:1 ortholog thereof. monarch-merged.owl STX2B|STX2C|epimorphin|STX2|STX2A|EPIM owl:Class PR:000015795 biolink:NamedThing syntaxin-3 A protein that is a translation product of the human STX3 gene or a 1:1 ortholog thereof. monarch-merged.owl STX3A|STX3 owl:Class PR:000015797 biolink:NamedThing syntaxin-5 A protein that is a translation product of the human STX5 gene or a 1:1 ortholog thereof. monarch-merged.owl STX5|STX5A owl:Class PR:000015798 biolink:NamedThing syntaxin-6 A protein that is a translation product of the human STX6 gene or a 1:1 ortholog thereof. monarch-merged.owl STX6 owl:Class PR:000015975 biolink:NamedThing sperm motility kinase Tcr mutant form A protein that is a translation product of the mouse Smoktcr gene or a 1:1 ortholog thereof. monarch-merged.owl dominant negative form of Smok|Smoktcr|Tcr|SmokTcr|responder protein Smok-Tcr owl:Class PR:000016051 biolink:NamedThing antigen peptide transporter 1 A protein that is a translation product of the human TAP1 gene or a 1:1 ortholog thereof. monarch-merged.owl APT1|peptide supply factor 1|Ham1|Ham-1|peptide transporter TAP1|PSF-1|really interesting new gene 4 protein|ATP-binding cassette sub-family B member 2|Y3|peptide transporter involved in antigen processing 1|PSF1|histocompatibility antigen modifier 1|ABCB2|TAP1|peptide transporter PSF1|RING4 owl:Class PR:000016052 biolink:NamedThing antigen peptide transporter 2 A protein that is a translation product of the human TAP2 gene or a 1:1 ortholog thereof. monarch-merged.owl PSF2|peptide transporter PSF2|Ham-2|really interesting new gene 11 protein|PSF-2|peptide transporter TAP2|TAP2|Ham2|peptide supply factor 2|Y1|ATP-binding cassette sub-family B member 3|APT2|histocompatibility antigen modifier 2|peptide transporter involved in antigen processing 2|ABCB3|RING11 owl:Class PR:000016053 biolink:NamedThing tapasin A protein that is a translation product of the human TAPBP gene or a 1:1 ortholog thereof. monarch-merged.owl TAP-associated protein|TAP-binding protein|TPN|NGS17|TPSN|NGS-17|TAPA|TAPBP owl:Class PR:000016156 biolink:NamedThing telethonin A protein that is a translation product of the human TCAP gene or a 1:1 ortholog thereof. monarch-merged.owl TCAP|titin cap protein owl:Class PR:000016261 biolink:NamedThing serotransferrin A protein that is a translation product of the human TF gene or a 1:1 ortholog thereof. monarch-merged.owl transferrin|siderophilin|TF|beta-1 metal-binding globulin|Trf owl:Class PR:000016301 biolink:NamedThing tyrosine 3-monooxygenase A protein that is a translation product of the human TH gene or a 1:1 ortholog thereof. monarch-merged.owl TYH|TH|tyrosine 3-hydroxylase owl:Class PR:000016542 biolink:NamedThing type 1B DNA topoisomerase 1 A protein that is a translation product of the human TOP1 gene or a 1:1 ortholog thereof. monarch-merged.owl TOP1|Top-1|DNA topoisomerase I owl:Class PR:000016798 biolink:NamedThing titin A protein that is a translation product of the human TTN gene or a 1:1 ortholog thereof. monarch-merged.owl TTN|rhabdomyosarcoma antigen MU-RMS-40.14|connectin owl:Class PR:000016876 biolink:NamedThing thymidylate synthase A protein that is a translation product of the human TYMS gene or a 1:1 ortholog thereof. monarch-merged.owl TYMS|TSase|thyA|TS owl:Class PR:000016954 biolink:NamedThing ubiquitin-60S ribosomal protein L40 A protein that is a translation product of the human UBA52 gene or a 1:1 ortholog thereof. monarch-merged.owl 60S ribosomal protein L40|UBA52|CEP52|UBCEP2 owl:Class PR:000016964 biolink:NamedThing ubiquitin D A protein that is a translation product of the human UBD gene or a 1:1 ortholog thereof. monarch-merged.owl FAT10|ubiquitin-like protein FAT10|UBD|diubiquitin owl:Class PR:000017272 biolink:NamedThing vinculin A protein that is a translation product of the human VCL gene or a 1:1 ortholog thereof. monarch-merged.owl metavinculin|VCL owl:Class PR:000017283 biolink:NamedThing vitamin D3 receptor A protein that is a translation product of the human VDR gene or a 1:1 ortholog thereof. monarch-merged.owl NR1I1|nuclear receptor subfamily 1 group I member 1|VDR|1,25-dihydroxyvitamin D3 receptor owl:Class PR:000018264 biolink:NamedThing proteolytic cleavage product A protein that is produced as the result of proteolytic processing of a longer protein. monarch-merged.owl ClvPrd|polypeptide|peptide protein owl:Class PR:000021998 biolink:NamedThing neurotrophin A protein that is a neurotrophic polypeptide factor that regulates neuronal differentiation and is essential for neuronal survival, neurite growth and plasticity. It contains a signal peptide, a propeptide, and a C-terminal Nerve growth factor family (Pfam:PF00243) domain. monarch-merged.owl owl:Class PR:000021999 biolink:NamedThing death receptor A protein that contains multiple TNFR/NGFR cysteine-rich region (Pfam:PF00020) within the extracellular ligand-binding domain, a type I (single pass) transmembrane domain, and a cytoplasmic Death domain (Pfam:PF00531) required for intracellular signaling. monarch-merged.owl owl:Class PR:000022358 biolink:NamedThing adenylate cyclase A protein that is a translation product of the Escherichia coli K-12 cyaA gene or a 1:1 ortholog thereof. monarch-merged.owl adenylyl cyclase|cyaA|ATP pyrophosphate-lyase|cya owl:Class PR:000024025 biolink:NamedThing methyl-accepting chemotaxis protein IV A protein that is a translation product of the Escherichia coli K-12 tap gene or a 1:1 ortholog thereof. monarch-merged.owl MCP-IV|dipeptide chemoreceptor protein|tap owl:Class PR:000024067 biolink:NamedThing homoserine kinase A protein that is a translation product of the Escherichia coli K-12 thrB gene or a 1:1 ortholog thereof. monarch-merged.owl HSK|thrB|HK owl:Class PR:000024990 biolink:NamedThing type II interferon A protein that binds to a specific cell surface receptor complex known as the IFN-gamma receptor (IFNGR), a complex of two IFNGR1 and two IFNGR2 chains. monarch-merged.owl IFN type II|interferon type II|interferon gamma Category=family. Note: Some references consider 'gamma' and 'type II' to be synonyms. This is likely because gamma is the only type II interferon identified. However, the classification criteria for each nomenclature system differ. protein owl:Class PR:000025845 biolink:NamedThing ephrin receptor A protein that consists of an Ephrin receptor ligand binding domain (Pfam:PF01404), two copies of the Fibronectin type III domain (Pfam:PF00041), and a copy of either type of SAM domain (Sterile alpha motif) (Pfam:PF00536 or Pfam:PF07647). monarch-merged.owl owl:Class PR:000025848 biolink:NamedThing type I interferon A protein that consists solely of an Interferon alpha/beta domain (Pfam:PF00143) and which binds to a specific cell surface receptor complex known as the IFN-alpha receptor (IFNAR), a heterodimer of IFNAR1 and IFNAR2 chains. monarch-merged.owl interferon type I|IFN type I Category=family. protein owl:Class PR:000029189 biolink:NamedThing AKT kinase A protein that has a core domain composition consisting of a PH domain (Pfam:PF00169), Protein kinase domain (Pfam:PF00069) and a Protein kinase C terminal domain (Pfam:PF00433). Mammals have three genes encoding AKT1, AKT2 and AKT3. The second messenger phosphatidylinositol-3,4,5-trisphosphate [PIP(3)], product of phosphatidylinositol 3-kinase, acts largely through its role as a kinase activator. Binding of the pleckstrin domain to PIP(3) results in its targeting to the plasma membrane. Full activity is gained only after phosphorylation at two sites. monarch-merged.owl AKT|serine-threonine kinase Akt|PKB owl:Class PR:000029394 biolink:NamedThing ATP-dependent RNA helicase DDX58 A protein that is a translation product of the human DDX58 gene or a 1:1 ortholog thereof. monarch-merged.owl DEAD box protein 58|RIG-I|RIG-1|retinoic acid-inducible gene 1 protein|retinoic acid-inducible gene I protein|DDX58|RLR-1|RIG-I-like receptor 1 owl:Class PR:000029968 biolink:NamedThing somatotropin hormone family member A protein that is a standalone version of the Hormone_1 domain (Pfam:PF00103). In the immature form, the domain is preceded by a signal peptide. monarch-merged.owl fam:GH1 Category=family. protein owl:Class PR:000030035 biolink:NamedThing G-protein coupled receptor A protein that has G protein-coupled receptor (GPCR) activity. Each GPCR consists of a single polypeptide with an extracellular N-terminus, an intracellular C-terminus and seven hydrophobic transmembrane domains (TM1-TM7) linked by three extracellular loops (ECL1-ECL3) and three intracellular loops (ICL1-ICL3). GPCRs function as part of a heterotrimeric complex to transmit an extracellular signal across the membrane by activating an associated G-protein via the exchange of GDP for GTP on the alpha subunit. monarch-merged.owl 7TM receptor|fam:GPCR|seven-transmembrane receptor owl:Class PR:000036194 biolink:NamedThing eukaryotic protein A protein that is encoded in the genome of some Eukaryota. monarch-merged.owl Eukaryota protein protein owl:Class PR:000036929 biolink:NamedThing polyubiquitin A protein that contains multiple tandem copies of the Ubiquitin (Pfam:PF00240) domain over the entire length of the sequence. monarch-merged.owl fam:polyUb owl:Class PR:000037070 biolink:NamedThing phosphoprotein A protein that includes at least one phosphorylated residue. monarch-merged.owl phosphorylated protein|Prot/PhosRes+ owl:Class PR:000044813 biolink:NamedThing glycoprotein hormone beta chain A protein with a core domain composition consisting of a signal peptide followed by a single copy of the Cys_knot (Pfam:PF00007) domain. The Cysteine knot is a protein structural motif containing three disulfide bridges. monarch-merged.owl owl:Class PR:000045358 biolink:NamedThing insulin family protein A protein that is a translation product of a gene that encodes a standalone Insulin (Pfam:PF00049) domain preceded by a signal peptide. monarch-merged.owl fam:INS Category=family. protein owl:Class PR:000001002 biolink:NamedThing CD19 molecule A protein that is a translation product of the human CD19 gene or a 1:1 ortholog thereof. It is composed of an N-terminal extracellular domain containing two Ig-like C2-type (immunoglobulin-like) domains, followed by a single-pass transmembrane segment and a cytoplasmic C-terminal tail. CD19 expression is restricted to members of the B cell lineage. It functions as a co-receptor for B-cell antigen receptor (BCR), regulating signal transduction. monarch-merged.owl differentiation antigen CD19|B-lymphocyte surface antigen B4|T-cell surface antigen Leu-12|CD19 PIRSF:PIRSF016630|IUPHARobj:2764 Category=gene. Requested by=CL. protein owl:Class PR:000001003 biolink:NamedThing CD34 molecule A protein that is a translation product of the human CD34 gene or a 1:1 ortholog thereof. It is a leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. It contains a single-pass transmembrane domain and that show distinct expression on early hematopoietic precursors and vascular-associated tissue. Acts as a scaffold that presents selectin carbohydrate ligands in a clustered, tissue specific manner to allow for higher avidity interactions between leukocytes and endothelial cells during the inflammatory process. In common with related sialomucins (endoglycan and podocalyxin), the extracellular region is dominated by an N-terminal mucin-like domain, which is densely substituted with sialylated O-linked carbohydrates. The mucin-like region is followed by a cysteine-containing and presumably globular domain. This domain may fold into an immunoglobulin-like structure as the positions of 2 of the cysteines are conserved in the C2 set of the immunoglobulin superfamily. The cytoplasmic domain is around 73-76 residues long and highly conserved. monarch-merged.owl CD34|hematopoietic progenitor cell antigen CD34 PIRSF:PIRSF028749 Category=gene. Requested by=CL. protein owl:Class PR:000001006 biolink:NamedThing receptor-type tyrosine-protein phosphatase C monarch-merged.owl owl:Class PR:000001018 biolink:NamedThing CD3 subunit with immunoglobulin domain A protein with a core domain composition consisting of an extracellular N-terminal domain that adopts an immunoglobulin fold, a transmembrane domain, and an intracellular C-terminal domain with a single copy of the Immunoreceptor tyrosine-based activation motif (Pfam:PF02189) (ITAM). It constitutes the invariant subunit of the T cell antigen receptor (TCR). TCR is a surface receptor on T cells responsible for recognizing MHC-restricted antigens and initiating the cellular immune response. monarch-merged.owl CD3 subunit with Ig-like domain PIRSF:PIRSF001993 Category=family. protein owl:Class PR:000001022 biolink:NamedThing neural cell adhesion molecule A protein with a domain composition consisting of a large extracellular domain, including five Ig-like C2-type domains followed by two copies of the Fibronectin type-III domain (Pfam:PF00041), a single-pass transmembrane domain and a short cytoplasmic C-terminal domain. monarch-merged.owl PIRSF:PIRSF002507 Category=family. protein owl:Class PR:000001083 biolink:NamedThing CD2 molecule A protein that is a translation product of the human CD2 gene or a 1:1 ortholog thereof. monarch-merged.owl CD2|T-cell surface antigen T11/Leu-5|LFA-2|ly-37|T-cell surface antigen CD2|erythrocyte receptor|rosette receptor|T-cell surface glycoprotein CD2|LFA-3 receptor|SRBC|lymphocyte antigen 37 PIRSF:PIRSF001984|IUPHARobj:2600 Category=gene. Requested by=CL. protein owl:Class PR:000001084 biolink:NamedThing T-cell surface glycoprotein CD8 alpha chain A protein that is a translation product of the human CD8A gene or a 1:1 ortholog thereof. CD8 is a transmembrane that is a co-receptor for MHC class-I antigen/T-cell receptor interaction. The most common form of CD8 is composed of a CD8 alpha and a CD8 beta chain. monarch-merged.owl CD8a|MAL|T-cell surface glycoprotein Lyt-2|Lyt-2|CD8A|T-lymphocyte differentiation antigen T8/Leu-2|Lyt2 PANTHER:PTHR10441:SF1 Category=gene. Requested by=CL. protein owl:Class PR:000001281 biolink:NamedThing ADP-ribosyl cyclase monarch-merged.owl owl:Class PR:000001289 biolink:NamedThing membrane-spanning 4-domains subfamily A member 1 A protein that is a translation product of the human MS4A1 gene or a 1:1 ortholog thereof. monarch-merged.owl B-lymphocyte surface antigen B1|MS4A1|Ms4a2|B-cell differentiation antigen Ly-44|Bp35|Ly-44|B-cell surface antigen CD20|lymphocyte antigen 44|B-lymphocyte antigen CD20|leukocyte surface antigen Leu-16|CD20 PIRSF:PIRSF001995|IUPHARobj:2628 Category=gene. Requested by=CL. protein owl:Class PR:000001293 biolink:NamedThing C-type lectin domain family 4 member K monarch-merged.owl owl:Class PR:000001355 biolink:NamedThing immunoglobulin gamma Fc receptor II/III/IV monarch-merged.owl owl:Class PR:000001384 biolink:NamedThing interleukin-23 subunit alpha A protein that is a translation product of the human IL23A gene or a 1:1 ortholog thereof. Interleukin-23 subunit alpha associates with interleukin-12 subunit beta to form the interleukin-23, a heterodimeric cytokine which functions in innate and adaptive immunity. monarch-merged.owl UNQ2498/PRO5798|IL-23-A|SGRF|IL-23p19|IL23A|interleukin-23 subunit p19|IL-23 subunit alpha PIRSF:PIRSF038754 Category=gene. protein owl:Class PR:000001785 biolink:NamedThing prominin monarch-merged.owl owl:Class PR:000001809 biolink:NamedThing CD59-like glycoprotein monarch-merged.owl owl:Class PR:000001839 biolink:NamedThing T-cell surface glycoprotein CD5 A protein that is a translation product of the human CD5 gene or a 1:1 ortholog thereof. monarch-merged.owl LEU1|Lyt-1|lymphocyte antigen T1/Leu-1|lymphocyte antigen 1|ly-1|CD5 PANTHER:PTHR19331:SF6 Category=gene. Requested by=CL. protein owl:Class PR:000001843 biolink:NamedThing Thy-1 membrane glycoprotein monarch-merged.owl owl:Class PR:000001865 biolink:NamedThing interleukin-3 receptor class 2 alpha chain monarch-merged.owl owl:Class PR:000001869 biolink:NamedThing interleukin-7 receptor subunit alpha A protein that is a translation product of the human IL7R gene or a 1:1 ortholog thereof. monarch-merged.owl IL7R|IL-7 receptor subunit alpha|CD127|IL-7R-alpha|CDw127|IL-7R subunit alpha|IL-7RA IUPHARobj:1698|PIRSF:PIRSF001960 Category=gene. Requested by=CL. protein owl:Class PR:000001889 biolink:NamedThing CD14 molecule A protein that is a translation product of the human CD14 gene or a 1:1 ortholog thereof. monarch-merged.owl myeloid cell-specific leucine-rich glycoprotein|monocyte differentiation antigen CD14|CD14 PIRSF:PIRSF002017 Category=gene. Requested by=CL. protein owl:Class PR:000001898 biolink:NamedThing neprilysin monarch-merged.owl owl:Class PR:000001925 biolink:NamedThing scavenger receptor cysteine-rich type 1 protein M130 monarch-merged.owl owl:Class PR:000001944 biolink:NamedThing transcription factor PU.1 monarch-merged.owl owl:Class PR:000001945 biolink:NamedThing transferrin receptor protein 1 A protein that is a translation product of the human TFRC gene or a 1:1 ortholog thereof. monarch-merged.owl TfR|p90|CD71|T9|TfR1|Trfr|TFRC|TR Category=gene. Requested by=CL. protein owl:Class PR:000002976 biolink:NamedThing Ly-6-like protein A protein that is the translation product of any of the LY6 genes (LY6A-LY6I). monarch-merged.owl PIRSF:PIRSF002021 Category=family. protein owl:Class PR:000003809 biolink:NamedThing alpha-fetoprotein A protein that is a translation product of the human AFP gene or a 1:1 ortholog thereof. monarch-merged.owl alpha-fetoglobulin|HPAFP|alpha-1-fetoprotein|AFP Category=gene. protein owl:Class PR:000003918 biolink:NamedThing albumin A protein that is a translation product of the human ALB gene or a 1:1 ortholog thereof. monarch-merged.owl UNQ696/PRO1341|PRO1708|Alb-1|GIG42|PRO2044|GIG20|serum albumin|PRO2675|Alb1|PRO2619|PRO0903|ALB Category=gene. protein owl:Class PR:000003964 biolink:NamedThing intestinal alkaline phosphatase A protein that is a translation product of the human ALPI gene or a 1:1 ortholog thereof. monarch-merged.owl IAP|ALPI Category=gene. protein owl:Class PR:000003968 biolink:NamedThing alkaline phosphatase, tissue-nonspecific isozyme A protein that is a translation product of the human ALPL gene or a 1:1 ortholog thereof. monarch-merged.owl AP-TNAP|Akp2|alkaline phosphatase 2|Akp-2|alkaline phosphatase liver/bone/kidney isozyme|TNSALP|ALPL Category=gene. protein owl:Class PR:000003969 biolink:NamedThing alkaline phosphatase, placental type A protein that is a translation product of the human ALPP gene or a 1:1 ortholog thereof. monarch-merged.owl ALPP|alkaline phosphatase Regan isozyme|PLAP|PLAP-1|placental alkaline phosphatase 1 Category=gene. protein owl:Class PR:000003970 biolink:NamedThing alkaline phosphatase, germ cell type A protein that is a translation product of the human ALPG gene or a 1:1 ortholog thereof. monarch-merged.owl alkaline phosphatase Nagao isozyme|germ cell alkaline phosphatase|ALPPL|ALP-1|alkaline phosphatase, placental-like|PLAP-like|ALPG|ALPPL2|placental alkaline phosphatase-like|GCAP Category=gene. protein owl:Class PR:000004089 biolink:NamedThing aldehyde oxidase A protein that is a translation product of the human AOX1 gene or a 1:1 ortholog thereof. monarch-merged.owl Ro|AO|AOX1|retinal oxidase Category=gene. protein owl:Class PR:000004155 biolink:NamedThing apolipoprotein E A protein that is a translation product of the human APOE gene or a 1:1 ortholog thereof. monarch-merged.owl apo-E|APOE Category=gene. protein owl:Class PR:000005061 biolink:NamedThing catalase A protein that is a translation product of the human CAT gene or a 1:1 ortholog thereof. monarch-merged.owl CAT|Cas1|Cas-1 Category=gene. protein owl:Class PR:000005307 biolink:NamedThing CCAAT/enhancer-binding protein alpha monarch-merged.owl owl:Class PR:000005794 biolink:NamedThing ceruloplasmin A protein that is a translation product of the human CP gene or a 1:1 ortholog thereof. monarch-merged.owl CP|ferroxidase Category=gene. protein owl:Class PR:000005867 biolink:NamedThing corticoliberin A protein that is a translation product of the human CRH gene or a 1:1 ortholog thereof. monarch-merged.owl CRF|CRH|corticotropin-releasing hormone|Gm1347|corticotropin-releasing factor Category=gene. protein owl:Class PR:000005897 biolink:NamedThing C-reactive protein A protein that is a translation product of the human CRP gene or a 1:1 ortholog thereof. monarch-merged.owl PTX1|CRP Category=gene. protein owl:Class PR:000006678 biolink:NamedThing dihydropyrimidine dehydrogenase [NADP(+)] A protein that is a translation product of the human DPYD gene or a 1:1 ortholog thereof. monarch-merged.owl DPYD|dihydrothymine dehydrogenase|dihydrouracil dehydrogenase|DPD|DHPDHase Category=gene. protein owl:Class PR:000007034 biolink:NamedThing elastin A protein that is a translation product of the human ELN gene or a 1:1 ortholog thereof. monarch-merged.owl ELN|tropoelastin Category=gene. protein owl:Class PR:000007499 biolink:NamedThing fibroblast growth factor 8 monarch-merged.owl owl:Class PR:000007636 biolink:NamedThing forkhead box protein N1 monarch-merged.owl owl:Class PR:000007785 biolink:NamedThing glutamate decarboxylase 1 A protein that is a translation product of the human GAD1 gene or a 1:1 ortholog thereof. monarch-merged.owl GAD1|67 kDa glutamic acid decarboxylase|GAD|GAD-67|glutamate decarboxylase 67 kDa isoform|GAD67 IUPHARobj:1272 Category=gene. protein owl:Class PR:000007812 biolink:NamedThing UDP-glucose 4-epimerase A protein that is a translation product of the human GALE gene or a 1:1 ortholog thereof. monarch-merged.owl UDP-galactose 4-epimerase|UDP-GalNAc 4-epimerase|UDP-N-acetylglucosamine 4-epimerase|UDP-GlcNAc 4-epimerase|galactowaldenase|GALE Category=gene. protein owl:Class PR:000007857 biolink:NamedThing erythroid transcription factor monarch-merged.owl owl:Class PR:000007858 biolink:NamedThing endothelial transcription factor GATA-2 monarch-merged.owl owl:Class PR:000007891 biolink:NamedThing pro-glucagon A protein that is a translation product of the human GCG gene or a 1:1 ortholog thereof. monarch-merged.owl GCG Category=gene. protein owl:Class PR:000007975 biolink:NamedThing cobalamin binding intrinsic factor A protein that is a translation product of the human CBLIF gene or a 1:1 ortholog thereof. monarch-merged.owl intrinsic factor|gastric intrinsic factor|IFMH|IF|GIF|CBLIF|INF Category=gene. protein owl:Class PR:000008056 biolink:NamedThing glutamate dehydrogenase 1, mitochondrial A protein that is a translation product of the human GLUD1 gene or a 1:1 ortholog thereof. monarch-merged.owl GLUD|GLUD1|GDH 1 Category=gene. protein owl:Class PR:000008153 biolink:NamedThing aspartate aminotransferase, cytoplasmic A protein that is a translation product of the human GOT1 gene or a 1:1 ortholog thereof. monarch-merged.owl SGOT|AspAT|AAT|transaminase A|aspartate aminotransferase|GOT1|ASAT|cysteine transaminase, cytoplasmic|SGO-T|cAspAT|AST|cCAT|serum glutamic oxaloacetic transaminase|glutamate oxaloacetate transaminase 1|aspartate transaminase|cAST|cysteine aminotransferase, cytoplasmic Category=gene. Note: This form is predominantly found in red blood cells and heart in humans. protein owl:Class PR:000008175 biolink:NamedThing glucose-6-phosphate isomerase A protein that is a translation product of the human GPI gene or a 1:1 ortholog thereof. monarch-merged.owl GPI|phosphohexose isomerase|NLK|AMF|Gpi1|autocrine motility factor|phosphoglucose isomerase|neuroleukin|sperm antigen 36|PHI|SA-36|PGI Category=gene. protein owl:Class PR:000008730 biolink:NamedThing 4-hydroxyphenylpyruvate dioxygenase A protein that is a translation product of the human HPD gene or a 1:1 ortholog thereof. monarch-merged.owl PPD|4-hydroxyphenylpyruvic acid oxidase|4HPPD|HPD|F protein|F Alloantigen|HPPDase IUPHARobj:2621 Category=gene. protein owl:Class PR:000008894 biolink:NamedThing iduronate 2-sulfatase A protein that is a translation product of the human IDS gene or a 1:1 ortholog thereof. monarch-merged.owl idursulfase|IDS|SIDS|alpha-L-iduronate sulfate sulfatase Category=gene. protein owl:Class PR:000009758 biolink:NamedThing leptin A protein that is a translation product of the human LEP gene or a 1:1 ortholog thereof. monarch-merged.owl obesity factor|LEP|OB|OBS|obese protein Category=gene. protein owl:Class PR:000009771 biolink:NamedThing galectin-3 A protein that is a translation product of the human LGALS3 gene or a 1:1 ortholog thereof. monarch-merged.owl L-31|lectin L-29|MAC2|L-34 galactoside-binding lectin|CBP 35|Mac-2 antigen|GALBP|gal-3|galactose-specific lectin 3|35 kDa lectin|galactoside-binding protein|carbohydrate-binding protein 35|laminin-binding protein|LGALS3|IgE-binding protein Category=gene. protein owl:Class PR:000010228 biolink:NamedThing myelin basic protein monarch-merged.owl owl:Class PR:000010379 biolink:NamedThing alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase A protein that is a translation product of the human MGAT2 gene or a 1:1 ortholog thereof. monarch-merged.owl MGAT2|beta-1,2-N-acetylglucosaminyltransferase II|GlcNAc-T II|GNT-II|mannoside acetylglucosaminyltransferase 2|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II Category=gene. protein owl:Class PR:000011107 biolink:NamedThing nebulin A protein that is a translation product of the human NEB gene or a 1:1 ortholog thereof. monarch-merged.owl NEB Category=gene. protein owl:Class PR:000011649 biolink:NamedThing 5-oxoprolinase A protein that is a translation product of the human OPLAH gene or a 1:1 ortholog thereof. monarch-merged.owl 5-OPase|pyroglutamase|OPLAH|5-oxo-L-prolinase Category=gene. protein owl:Class PR:000012234 biolink:NamedThing phenylalanine-4-hydroxylase A protein that is a translation product of the human PAH gene or a 1:1 ortholog thereof. monarch-merged.owl PAH|Phe-4-monooxygenase IUPHARobj:1240 Category=gene. protein owl:Class PR:000014841 biolink:NamedThing sonic hedgehog protein monarch-merged.owl owl:Class PR:000015557 biolink:NamedThing spondin-1 monarch-merged.owl owl:Class PR:000015658 biolink:NamedThing SCO-spondin monarch-merged.owl owl:Class PR:000015665 biolink:NamedThing somatostatin A protein that is a translation product of the human SST gene or a 1:1 ortholog thereof. monarch-merged.owl SST|Smst|growth hormone release-inhibiting factor Category=gene. protein owl:Class PR:000016043 biolink:NamedThing T-cell acute lymphocytic leukemia protein 1 A protein that is a translation product of the human TAL1 gene or a 1:1 ortholog thereof. monarch-merged.owl stem cell protein|TAL1|SCL|class A basic helix-loop-helix protein 17|bHLHa17|TCL5|TAL-1|T-cell leukemia/lymphoma protein 5|BHLHA17 Category=gene. Requested by=CL. protein owl:Class PR:000016275 biolink:NamedThing trefoil factor 2 A protein that is a translation product of the human TFF2 gene or a 1:1 ortholog thereof. monarch-merged.owl TFF2|spasmolytic polypeptide|SP|spasmolysin|SML1 Category=gene. protein owl:Class PR:000016283 biolink:NamedThing thyroglobulin monarch-merged.owl owl:Class PR:000017364 biolink:NamedThing von Willebrand factor A protein that is a translation product of the human VWF gene or a 1:1 ortholog thereof. monarch-merged.owl VWF|F8VWF|vWF Category=gene. protein owl:Class PR:000017477 biolink:NamedThing xanthine dehydrogenase/oxidase A protein that is a translation product of the human XDH gene or a 1:1 ortholog thereof. monarch-merged.owl XDHA|XDH IUPHARobj:2646 Category=gene. protein owl:Class PR:000023089 biolink:NamedThing DNA ligase A protein that is a translation product of the Escherichia coli K-12 ligA gene or a 1:1 ortholog thereof. monarch-merged.owl owl:Class PR:000023661 biolink:NamedThing orotidine 5'-phosphate decarboxylase A protein that is a translation product of the Escherichia coli K-12 pyrF gene or a 1:1 ortholog thereof. monarch-merged.owl OMP decarboxylase|OMPdecase|pyrF|OMPDCase Category=gene. protein owl:Class PR:000025471 biolink:NamedThing nuclease S1 A protein that is a translation product of the Aspergillus oryzae nucS gene or a 1:1 ortholog thereof. monarch-merged.owl owl:Class PR:000025796 biolink:NamedThing integrin alpha A protein that is composed of a long N-terminal extracellular domain, a transmembrane domain and a short cytoplasmic C-terminal domain. The N-terminal domain contains beta-propeller repeats (interrupted by an A domain in a subset of integrins alpha), while the C-terminal domain contains a GFFxR motif. monarch-merged.owl Category=family. Integrins are heterodimeric complexes of an alpha and a beta subunit. They are a structurally elaborate family of adhesion molecules that transmit signals bidirectionally across the plasma membrane by undergoing large-scale structural rearrangements. By regulating cell-cell and cell-matrix contacts, integrins participate in a wide-range of biological interactions including development, tissue repair, angiogenesis, inflammation and hemostasis. [PMID:10402956, PMID:11988479, PMID:9676575]. protein owl:Class PR:000025875 biolink:NamedThing serpin A protein that is primarily known as an irreversible serine protease inhibitor active against S1, S8 and C14 peptidases. There are both extra- and intra-cellular serpins, which are found in all groups of organisms with the notable exception of fungi. Serpin contains a copy of the Serpin (Pfam:PF00079) domain. monarch-merged.owl PANTHER:PTHR11461|PIRSF:PIRSF001630 Category=family. protein owl:Class PR:000027222 biolink:NamedThing CALCA gene translation product A protein that is a translation product of the human CALCA gene or a 1:1 ortholog thereof. monarch-merged.owl CALCA|CALC Category=gene. protein owl:Class PR:000049995 biolink:NamedThing active alpha-amylase isozyme A protein that has alpha-amylase activity. monarch-merged.owl fam:AMY Category=family. Note: The enzymatic activity corresponds to EC 3.2.1.1. This class refers only to functional enzymes; that is, those with measurable activity. protein owl:Class PR:000050025 biolink:NamedThing angiotensinogenase A protein that is a translation product of the mouse Ren1 or Ren2 genes, 1:1 orthologs thereof, or a semi-ortholog thereof. monarch-merged.owl fam:angiotensinogenase Category=family. protein owl:Class PR:000050060 biolink:NamedThing glucose-6-phosphate dehydrogenase A protein that contains a single copy of the Glucose-6-phosphate dehydrogenase, NAD binding domain (Pfam:PF00479) at or near the N terminus, a single copy of the Glucose-6-phosphate dehydrogenase, C-terminal domain (Pfam:PF02781) at or near the C terminus, and no other domains. monarch-merged.owl fam:G6PD Category=family. protein owl:Class PR:000050174 biolink:NamedThing immunoglobulin heavy chain protein A protein that is a translation product of some mRNA produced by a somatically recombined immunoglobulin heavy chain locus. monarch-merged.owl IgH Category=family. Requested by=IEDB. Note: In human, the IgH locus is described by https://www.genenames.org/cgi-bin/genefamilies/set/349. In mouse, the locus is described by MGI:96442. protein owl:Class PR:000050175 biolink:NamedThing immunoglobulin light chain protein A protein that is a translation product of some mRNA produced by a somatically recombined immunoglobulin light chain locus. monarch-merged.owl IgL Category=family. Note: In human, the kappa light chain locus is described by https://www.genenames.org/cgi-bin/genefamilies/set/351, and the lambda light chain locus is described by https://www.genenames.org/cgi-bin/genefamilies/set/353. In mouse, the kappa locus is described by MGI:96494, and the lambda locus is described by MGI:96526. protein owl:Class PR:000050219 biolink:NamedThing alanine aminotransferase A protein that is a translation product of the human GPT or GPT2 genes, 1:1 orthologs thereof, or a semi-ortholog thereof. monarch-merged.owl fam:ALAT Category=family. protein owl:Class CHEBI:136622 biolink:NamedThing aci-nitro compound monarch-merged.owl owl:Class CHEBI:16775 biolink:NamedThing 3-aci-nitropropanoic acid monarch-merged.owl owl:Class CHEBI:77894 biolink:NamedThing aci-nitroethane monarch-merged.owl owl:Class CHEBI:13610 biolink:NamedThing 3beta-hydroxysterol ester monarch-merged.owl owl:Class CHEBI:23895 biolink:NamedThing ecdysteroid ester monarch-merged.owl owl:Class CHEBI:52320 biolink:NamedThing ergosteryl ester monarch-merged.owl owl:Class CHEBI:52322 biolink:NamedThing zymosterol ester monarch-merged.owl owl:Class CHEBI:52393 biolink:NamedThing episterol ester monarch-merged.owl owl:Class CHEBI:52394 biolink:NamedThing lanosteryl ester monarch-merged.owl owl:Class CHEBI:64971 biolink:NamedThing ergosta-5,7,22,24(28)-tetraen-3beta-yl acetate monarch-merged.owl owl:Class CHEBI:82869 biolink:NamedThing (24S)-24-hydroxycholesterol ester monarch-merged.owl owl:Class CHEBI:82875 biolink:NamedThing (24S)-24-hydroxycholesterol 3-linoleoate monarch-merged.owl owl:Class CHEBI:16385 biolink:NamedThing organic sulfide Compounds having the structure RSR (R =/= H). Such compounds were once called thioethers. monarch-merged.owl sulfides|organic sulfides|Thioether|RSR|Sulfide|thioethers 0 SR2 32.066 31.97207 KEGG:C00297 CHEBI:13694|CHEBI:9340|CHEBI:26960 chebi_ontology owl:Class CHEBI:17755 biolink:NamedThing cystathionine A modified amino acid generated by enzymic means from homocysteine and serine. monarch-merged.owl 2-amino-4-[(2-amino-2-carboxyethyl)sulfanyl]butanoic acid|cystathione|S-(2-amino-2-carboxyethyl)homocysteine|Cystathionine|DL-Cystathionine 0 C7H14N2O4S InChI=1S/C7H14N2O4S/c8-4(6(10)11)1-2-14-3-5(9)7(12)13/h4-5H,1-3,8-9H2,(H,10,11)(H,12,13) ILRYLPWNYFXEMH-UHFFFAOYSA-N 222.26314 222.06743 NC(CCSCC(N)C(O)=O)C(O)=O PMID:22212096|PMID:15033753|PMID:22264337|KEGG:C00542|Reaxys:2416815|CAS:535-34-2|PMID:12907234 CHEBI:14059|CHEBI:4048 chebi_ontology owl:Class CHEBI:22327 biolink:NamedThing aliphatic sulfide monarch-merged.owl aliphatic thioethers|aliphatic thioether chebi_ontology owl:Class CHEBI:27532 biolink:NamedThing L-cysteine thioether monarch-merged.owl owl:Class CHEBI:35666 biolink:NamedThing thiopurine monarch-merged.owl owl:Class CHEBI:35683 biolink:NamedThing aryl sulfide Any organic sulfide in which the sulfur is attached to at least one aromatic group. monarch-merged.owl aryl sulfide|aryl sulfides chebi_ontology owl:Class CHEBI:73388 biolink:NamedThing caldariellaquinol monarch-merged.owl owl:Class CHEBI:79322 biolink:NamedThing thia-alkylglucosinolic acid monarch-merged.owl owl:Class CHEBI:83991 biolink:NamedThing imidothioate monarch-merged.owl owl:Class CHEBI:26333 biolink:NamedThing prostaglandin Naturally occurring compounds derived from the parent C20 acid, prostanoic acid. monarch-merged.owl prostaglandins|prostaglandin LIPID_MAPS_class:LMFA0301|CAS:11000-26-3 chebi_ontology owl:Class CHEBI:26995 biolink:NamedThing thromboxane A class of oxygenated oxane derivatives, originally derived from prostaglandin precursors in platelets, that stimulate aggregation of platelets and constriction of blood vessels. monarch-merged.owl thromboxane|thromboxanes LIPID_MAPS_class:LMFA0303|Wikipedia:Thromboxane chebi_ontology owl:Class CHEBI:34751 biolink:NamedThing F4-Neuroprostane (4-series) monarch-merged.owl F4-Neuroprostane (4-series) 0 C22H34O5 InChI=1S/C22H34O5/c1-2-3-4-5-6-7-8-9-10-11-18-19(21(25)16-20(18)24)14-12-17(23)13-15-22(26)27/h3-4,6-7,9-10,12,14,17-21,23-25H,2,5,8,11,13,15-16H2,1H3,(H,26,27)/b4-3-,7-6-,10-9-,14-12+ XAFFULPVQSAGOV-GSPMAKDWSA-N 378.503 378.24062 CC\C=C/C\C=C/C\C=C/CC1C(O)CC(O)C1\C=C\C(O)CCC(O)=O KEGG:C13818 chebi_ontology owl:Class CHEBI:13611 biolink:NamedThing 4-hydroxy carboxylic acid monarch-merged.owl owl:Class CHEBI:52618 biolink:NamedThing 2-hydroxy carboxylic acid monarch-merged.owl owl:Class CHEBI:61355 biolink:NamedThing 3-hydroxy carboxylic acid Any hydroxy carboxylic acid which contains a hydroxy group located beta- to the carboxylic acid group. monarch-merged.owl beta-hydroxy carboxylic acids|3-hydroxy carboxylic acids|beta-hydroxy carboxylic acid|beta-hydroxycarboxylic acid|beta-hydroxycarboxylic acids|3-hydroxycarboxylic acid|3-hydroxycarboxylic acids chebi_ontology owl:Class CHEBI:13614 biolink:NamedThing 6,7-dihydropteridines monarch-merged.owl owl:Class CHEBI:26373 biolink:NamedThing pteridines monarch-merged.owl chebi_ontology owl:Class CHEBI:17410 biolink:NamedThing pteridine-2,4,6,7-tetrol monarch-merged.owl owl:Class CHEBI:17601 biolink:NamedThing 6,7-dimethyl-8-(1-D-ribityl)lumazine monarch-merged.owl owl:Class CHEBI:26375 biolink:NamedThing pterins monarch-merged.owl chebi_ontology owl:Class CHEBI:27601 biolink:NamedThing pteridine monarch-merged.owl owl:Class CHEBI:28889 biolink:NamedThing 5,6,7,8-tetrahydropteridine monarch-merged.owl owl:Class CHEBI:136179 biolink:NamedThing (+)-7-isojasmonate monarch-merged.owl owl:Class CHEBI:138625 biolink:NamedThing (+)-jasmonic acid anion monarch-merged.owl owl:Class CHEBI:58431 biolink:NamedThing jasmonate(1-) monarch-merged.owl owl:Class CHEBI:15929 biolink:NamedThing (-)-methyl jasmonate monarch-merged.owl owl:Class CHEBI:136180 biolink:NamedThing N-[(+)-7-isojasmonyl]-L-isoleucinate monarch-merged.owl owl:Class CHEBI:138626 biolink:NamedThing N-[(3R)-12-hydroxyjasmonyl]-L-isoleucinate monarch-merged.owl owl:Class CHEBI:138627 biolink:NamedThing N-[(3R)-jasmonyl]-L-isoleucinate monarch-merged.owl owl:Class CHEBI:136181 biolink:NamedThing N-[(+)-12-hydroxy-7-isojasmonyl]-L-isoleucinate monarch-merged.owl owl:Class CHEBI:136218 biolink:NamedThing lysophosphatidylglycerol 18:1 monarch-merged.owl owl:Class CHEBI:90454 biolink:NamedThing lysophosphatidylglycerol monarch-merged.owl owl:Class CHEBI:136219 biolink:NamedThing lysophosphatidylglycerol 18:1/0:0 monarch-merged.owl owl:Class CHEBI:62747 biolink:NamedThing 1-acyl-sn-glycero-3-phosphoglycerol monarch-merged.owl owl:Class CHEBI:64845 biolink:NamedThing 1-acyl-sn-glycero-3-phospho-(1'-sn-glycerol) monarch-merged.owl owl:Class CHEBI:85407 biolink:NamedThing 1-palmitoyl-sn-glycero-3-phosphoglycerol monarch-merged.owl owl:Class CHEBI:136235 biolink:NamedThing phosphatidylinositol 36:4 monarch-merged.owl owl:Class CHEBI:16749 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol A phosphatidylinositol in which the inositol moiety is the 1D-myo isomer and the phosphatidyl group is located at its position 1. monarch-merged.owl phosphoinositide|Phosphatidylinositol|1,2-diacyl-sn-glycero(3)phospho(1)-D-myo-inositol|PtdIns|1-Phosphatidyl-D-myo-inositol|1-(3-sn-phosphatidyl)-D-myo-inositol|(3-Phosphatidyl)-1-D-inositol|1-Phosphatidyl-myo-inositol|Phosphatidyl-1D-myo-inositol|1-O-(3-sn-phosphatidyl)-1D-myo-inositol|1-Phosphatidyl-1D-myo-inositol 0 C11H17O13P 388.219 388.04068 [C@@H]1([C@@H]([C@@H]([C@@H]([C@H]([C@@H]1O)O)O)O)OP(OC[C@@H](COC(*)=O)OC(=O)*)(=O)O)O KEGG:C01194|PMID:28600633 CHEBI:677|CHEBI:19086|CHEBI:679|CHEBI:11280|CHEBI:11292|CHEBI:11291|CHEBI:19088|CHEBI:11283 chebi_ontology owl:Class CHEBI:136236 biolink:NamedThing phosphatidylinositol 36:2 monarch-merged.owl owl:Class CHEBI:136239 biolink:NamedThing phosphatidylinositol 38:4 monarch-merged.owl owl:Class CHEBI:136243 biolink:NamedThing phosphatidylinositol 34:2 monarch-merged.owl owl:Class CHEBI:64889 biolink:NamedThing 1-acyl-2-hexadecanoyl-sn-glycero-3-phospho-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:64890 biolink:NamedThing 1-hexadecanoyl-2-acyl-sn-glycero-3-phospho-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:65090 biolink:NamedThing 1-octadecanoyl-2-acyl-sn-glycero-3-phospho-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:65243 biolink:NamedThing 1,2-dioctanoyl-sn-glycero-3-phospho-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:74576 biolink:NamedThing 1-acyl-2-(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-sn-glycero-3-phospho-D-myo-inositol monarch-merged.owl owl:Class CHEBI:74577 biolink:NamedThing 1-acyl-2-arachidonoyl-sn-glycero-3-phospho-D-myo-inositol monarch-merged.owl owl:Class CHEBI:77348 biolink:NamedThing 1,2-dilinoleoyl-sn-glycero-3-phospho-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:83240 biolink:NamedThing 1,2-dibutyryl-sn-glycero-3-phospho-(1'D-myo-inositol) monarch-merged.owl owl:Class CHEBI:84317 biolink:NamedThing 1-acyl-2-stearoyl-sn-glycero-3-phospho-(1D-myo-inositol) monarch-merged.owl owl:Class CHEBI:136256 biolink:NamedThing phosphatidylserine 36:1 monarch-merged.owl owl:Class CHEBI:136257 biolink:NamedThing phosphatidylserine 36:2 monarch-merged.owl owl:Class CHEBI:137155 biolink:NamedThing phosphatidylserine 36:3 monarch-merged.owl owl:Class CHEBI:34086 biolink:NamedThing {1-O-hexadecanoyl-2-O-[(Z)-octadec-9-enoyl]-sn-glycero-3-phospho}serine monarch-merged.owl owl:Class CHEBI:75099 biolink:NamedThing 1-oleoyl-2-arachidonoyl-sn-glycero-3-phospho-L-serine monarch-merged.owl owl:Class CHEBI:75101 biolink:NamedThing 1-oleoyl-2-palmitoleoyl-sn-glycero-3-phospho-L-serine monarch-merged.owl owl:Class CHEBI:75103 biolink:NamedThing 1-oleoyl-2-stearoyl-sn-glycero-3-phospho-L-serine monarch-merged.owl owl:Class CHEBI:75106 biolink:NamedThing 1-oleoyl-2-palmitoyl-sn-glycero-3-phospho-L-serine monarch-merged.owl owl:Class CHEBI:79098 biolink:NamedThing 1-octadecanoyl-2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphoserine monarch-merged.owl owl:Class CHEBI:79103 biolink:NamedThing 1-hexadecanoyl-2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphoserine monarch-merged.owl owl:Class CHEBI:79113 biolink:NamedThing 1-stearoyl-2-arachidonoyl-sn-glycero-3-phosphoserine monarch-merged.owl owl:Class CHEBI:85400 biolink:NamedThing 1-heptadecanoyl-2-arachidonoyl-sn-glycero-3-phosphoserine monarch-merged.owl owl:Class CHEBI:136286 biolink:NamedThing 9-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:136304 biolink:NamedThing 13-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:136370 biolink:NamedThing 5-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:139190 biolink:NamedThing hydroxy fatty acid anion 16:0 monarch-merged.owl owl:Class CHEBI:139192 biolink:NamedThing hydroxy fatty acid anion 18:0 monarch-merged.owl owl:Class CHEBI:139196 biolink:NamedThing hydroxy fatty acid anion 22:0 monarch-merged.owl owl:Class CHEBI:139198 biolink:NamedThing hydroxy fatty acid anion 24:0 monarch-merged.owl owl:Class CHEBI:139200 biolink:NamedThing hydroxy fatty acid anion 26:0 monarch-merged.owl owl:Class CHEBI:143089 biolink:NamedThing 10-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:136398 biolink:NamedThing N-acetyl-alpha-neuraminyl-(2->6)-beta-D-galactoside(1-) monarch-merged.owl owl:Class CHEBI:21619 biolink:NamedThing N-acetylneuraminates monarch-merged.owl N-acetylneuraminate chebi_ontology owl:Class CHEBI:140308 biolink:NamedThing alpha-N-acetylneuraminyl-(2->3)-beta-D-galactoside(1-) monarch-merged.owl owl:Class CHEBI:140309 biolink:NamedThing alpha-N-acetylneuraminyl-(2->8)-alpha-N-acetylneuraminyl-(2->3)-beta-D-galactoside(2-) monarch-merged.owl owl:Class CHEBI:29065 biolink:NamedThing N-acetyl-O-acetylneuraminate monarch-merged.owl owl:Class CHEBI:35418 biolink:NamedThing N-acetylneuraminate A ketoaldonate that is the conjugate base of N-acetylneuraminic acid, obtained by deprotonation of the carboxy group. monarch-merged.owl 5-acetamido-3,5-dideoxy-D-galacto-non-2-ulopyranosonate|sialate|N-acetylneuraminate -1 C11H18NO9 InChI=1S/C11H19NO9/c1-4(14)12-7-5(15)2-11(20,10(18)19)21-9(7)8(17)6(16)3-13/h5-9,13,15-17,20H,2-3H2,1H3,(H,12,14)(H,18,19)/p-1/t5-,6+,7+,8+,9+,11?/m0/s1 SQVRNKJHWKZAKO-LUWBGTNYSA-M 308.26196 308.09870 [H][C@]1(OC(O)(C[C@H](O)[C@H]1NC(C)=O)C([O-])=O)[C@H](O)[C@H](O)CO Reaxys:9227329|MetaCyc:N-ACETYLNEURAMINATE CHEBI:21617|CHEBI:12471|CHEBI:12579|CHEBI:33987 chebi_ontology owl:Class CHEBI:71502 biolink:NamedThing beta-D-GalNAc-(1->4)-[alpha-Neu5Ac-(2->3)]-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(1-) monarch-merged.owl owl:Class CHEBI:136400 biolink:NamedThing 8(S),15(S)-DiHPETE monarch-merged.owl owl:Class CHEBI:136401 biolink:NamedThing 14(R),15(S)-DiHPETE monarch-merged.owl owl:Class CHEBI:138291 biolink:NamedThing (5S,15S)-dihydroperoxy-(6E,8Z,11Z,13E)-icosatetraenoic acid monarch-merged.owl owl:Class CHEBI:136416 biolink:NamedThing 5'-end 2'-deoxyribonucleoside residue monarch-merged.owl owl:Class CHEBI:50320 biolink:NamedThing nucleoside residue monarch-merged.owl nucleoside residues chebi_ontology owl:Class CHEBI:138284 biolink:NamedThing 5'-end ribonucleoside residue monarch-merged.owl owl:Class CHEBI:33791 biolink:NamedThing canonical nucleoside residue monarch-merged.owl standard nucleoside residues|canonical nucleoside residues|nucleoside residue|common nucleoside residues chebi_ontology owl:Class CHEBI:62836 biolink:NamedThing 2-methylthio-N(6)-(cis-4-hydroxy-Delta(2)-isopentenyl)adenosine residue monarch-merged.owl owl:Class CHEBI:62866 biolink:NamedThing 2-methylthio-N(6)-(Delta(2)-isopentenyl)adenosine residue monarch-merged.owl owl:Class CHEBI:62885 biolink:NamedThing adenosine residue monarch-merged.owl owl:Class CHEBI:64654 biolink:NamedThing guanosine residue monarch-merged.owl owl:Class CHEBI:64656 biolink:NamedThing cytidine residue monarch-merged.owl owl:Class CHEBI:73265 biolink:NamedThing archaeosine residue monarch-merged.owl owl:Class CHEBI:73747 biolink:NamedThing uridine residue monarch-merged.owl owl:Class CHEBI:136422 biolink:NamedThing (Z)-desulfoglucotropeolin monarch-merged.owl owl:Class CHEBI:15911 biolink:NamedThing desulfoglucotropeolin monarch-merged.owl owl:Class CHEBI:136424 biolink:NamedThing (E)-omega-[(methylsulfanyl)alkyl]thiohydroximate monarch-merged.owl owl:Class CHEBI:136432 biolink:NamedThing (E)-2-(indol-3-yl)-1-thioacetohydroximate monarch-merged.owl owl:Class CHEBI:136425 biolink:NamedThing omega-(methylsulfanyl)alkyl desulfoglucosinolate monarch-merged.owl owl:Class CHEBI:136442 biolink:NamedThing desulfoglucosinolic acid monarch-merged.owl owl:Class CHEBI:80545 biolink:NamedThing indolylmethyl desulfoglucosinolate monarch-merged.owl owl:Class CHEBI:136428 biolink:NamedThing N-hydroxyimidothioate monarch-merged.owl owl:Class CHEBI:136434 biolink:NamedThing omega-[(methylsulfanyl)alkyl]glucosinolate monarch-merged.owl owl:Class CHEBI:62651 biolink:NamedThing thia-alkylglucosinolate monarch-merged.owl owl:Class CHEBI:136435 biolink:NamedThing omega-[(methylsulfinyl)alkyl]glucosinolate monarch-merged.owl owl:Class CHEBI:36445 biolink:NamedThing alkylglucosinolate monarch-merged.owl owl:Class CHEBI:136436 biolink:NamedThing 2-hydroxy-(indol-3-yl)acetate monarch-merged.owl owl:Class CHEBI:143274 biolink:NamedThing indole-3-butyrate monarch-merged.owl owl:Class CHEBI:30854 biolink:NamedThing indole-3-acetate monarch-merged.owl owl:Class CHEBI:62622 biolink:NamedThing (5-hydroxyindol-3-yl)acetate The indol-3-yl carboxylic acid anion formed by loss of a proton from the carboxy group of (5-hydroxyindol-3-yl)acetic acid; principal microspecies at pH 7.3 monarch-merged.owl (5-hydroxyindol-3-yl)acetate(1-)|5-hydroxyindoleacetate(1-)|(5-hydroxy-1H-indol-3-yl)acetate|(5-hydroxyindol-3-yl)acetate|5-hydroxy-3-indole acetic acid anion -1 C10H8NO3 InChI=1S/C10H9NO3/c12-7-1-2-9-8(4-7)6(5-11-9)3-10(13)14/h1-2,4-5,11-12H,3H2,(H,13,14)/p-1 DUUGKQCEGZLZNO-UHFFFAOYSA-M 190.17540 190.05097 Oc1ccc2[nH]cc(CC([O-])=O)c2c1 MetaCyc:5-HYDROXYINDOLE_ACETATE|Reaxys:8630548 chebi_ontology owl:Class CHEBI:52508 biolink:NamedThing chloroindole monarch-merged.owl owl:Class CHEBI:59196 biolink:NamedThing dichlorochromopyrrolic acid monarch-merged.owl owl:Class CHEBI:136438 biolink:NamedThing D-thioglucoside monarch-merged.owl owl:Class CHEBI:9553 biolink:NamedThing thioglucoside monarch-merged.owl owl:Class CHEBI:136440 biolink:NamedThing beta-D-thioglucoside monarch-merged.owl owl:Class CHEBI:79316 biolink:NamedThing glucosinolic acid monarch-merged.owl owl:Class CHEBI:136448 biolink:NamedThing Cer(d18:0/18:1) monarch-merged.owl owl:Class CHEBI:31488 biolink:NamedThing N-acylsphinganine monarch-merged.owl owl:Class CHEBI:52962 biolink:NamedThing N-hexacosanoylsphinganine monarch-merged.owl owl:Class CHEBI:67021 biolink:NamedThing N-docosanoylsphinganine monarch-merged.owl owl:Class CHEBI:67027 biolink:NamedThing N-eicosanoylsphinganine monarch-merged.owl owl:Class CHEBI:67033 biolink:NamedThing N-octodecanoylsphinganine monarch-merged.owl owl:Class CHEBI:67042 biolink:NamedThing N-hexadecanoylsphinganine monarch-merged.owl owl:Class CHEBI:67045 biolink:NamedThing N-tetradecanoylsphinganine monarch-merged.owl owl:Class CHEBI:72019 biolink:NamedThing N-octacosanoylsphinganine monarch-merged.owl owl:Class CHEBI:74160 biolink:NamedThing C24:1-sphinganine monarch-merged.owl owl:Class CHEBI:74162 biolink:NamedThing C26:1-sphinganine monarch-merged.owl owl:Class CHEBI:76226 biolink:NamedThing N-hexanoyldihydroceramide monarch-merged.owl owl:Class CHEBI:82841 biolink:NamedThing N-octanoyldihydrosphingosine monarch-merged.owl owl:Class CHEBI:83247 biolink:NamedThing N-(2-hydroxyacyl)sphinganine monarch-merged.owl owl:Class CHEBI:85200 biolink:NamedThing N-icosenoylsphinganine monarch-merged.owl owl:Class CHEBI:85206 biolink:NamedThing N-arachidonoylsphinganine monarch-merged.owl owl:Class CHEBI:85261 biolink:NamedThing N-dodecanoylsphinganine monarch-merged.owl owl:Class CHEBI:86265 biolink:NamedThing N-(1,2-saturated acyl)sphinganine monarch-merged.owl owl:Class CHEBI:25381 biolink:NamedThing monoalkyl phosphate monarch-merged.owl owl:Class CHEBI:17857 biolink:NamedThing 4-methyl-5-(2-phosphonooxyethyl)thiazole monarch-merged.owl owl:Class CHEBI:62912 biolink:NamedThing 2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate monarch-merged.owl owl:Class CHEBI:65121 biolink:NamedThing isopentenyl phosphate monarch-merged.owl owl:Class CHEBI:136471 biolink:NamedThing phosphatidylethanolamine (16:1/16:1) monarch-merged.owl owl:Class CHEBI:138922 biolink:NamedThing 1,2-dihexanoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:138923 biolink:NamedThing 1-heptanoyl-2-hexanoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:138926 biolink:NamedThing 1,2-diheptadecanoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:73117 biolink:NamedThing 1-hexadecanoyl-2-(5Z,8Z,11Z,14Z-icosatetraenoyl)-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:73121 biolink:NamedThing 1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:73124 biolink:NamedThing 1-hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:73126 biolink:NamedThing 1-hexadecanoyl-2-octadecanoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:73127 biolink:NamedThing 1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:75169 biolink:NamedThing 1-oleoyl-2-arachidonoyl-sn-glycerol-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:79097 biolink:NamedThing 1-hexadecanoyl-2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:79109 biolink:NamedThing 1-octadecanoyl-2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:79110 biolink:NamedThing 1-stearoyl-2-arachidonoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:82837 biolink:NamedThing 1-oleoyl-2-palmitoleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:82839 biolink:NamedThing 1-oleoyl-2-palmitoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:84543 biolink:NamedThing 1-oleoyl-2-linoleyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:84839 biolink:NamedThing 1,2-di-[(9Z)-octadecenoyl]-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85076 biolink:NamedThing 1-oleoyl-2-stearoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85408 biolink:NamedThing 1-heptadecanoyl-2-arachidonoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:136485 biolink:NamedThing 8(S),15(S)-DiHETE monarch-merged.owl owl:Class CHEBI:88456 biolink:NamedThing 8,15-DiHETE monarch-merged.owl owl:Class CHEBI:136493 biolink:NamedThing phosphatidylinositol (16:0/18:2) monarch-merged.owl owl:Class CHEBI:136505 biolink:NamedThing homocysteine derivative A non-proteinogenic amino acid derivative resulting from reaction of homocysteine at the amino group, the carboxy group, or the side-chain amino group, or from the replacement of any hydrogen of homocysteine by a heteroatom. The definition normally excludes peptides containing homocysteine residues. monarch-merged.owl homocysteine derivatives chebi_ontology owl:Class CHEBI:83812 biolink:NamedThing non-proteinogenic amino acid derivative Any derivative of a non-proteinogenic amino acid resulting from reaction at an amino group or carboxy group, or from the replacement of any hydrogen by a heteroatom. monarch-merged.owl non-canonical amino acid derivative|non-canonical amino-acid derivatives|non-proteinogenic amino-acid derivatives chebi_ontology owl:Class CHEBI:25718 biolink:NamedThing ornithine derivative monarch-merged.owl owl:Class CHEBI:47997 biolink:NamedThing D-tryptophan derivative monarch-merged.owl owl:Class CHEBI:83944 biolink:NamedThing D-alanine derivative monarch-merged.owl owl:Class CHEBI:83979 biolink:NamedThing D-aspartic acid derivative monarch-merged.owl owl:Class CHEBI:83983 biolink:NamedThing D-glutamic acid derivative monarch-merged.owl owl:Class CHEBI:84113 biolink:NamedThing D-isoleucine derivative monarch-merged.owl owl:Class CHEBI:84114 biolink:NamedThing D-leucine derivative monarch-merged.owl owl:Class CHEBI:84124 biolink:NamedThing D-tyrosine derivative A non-proteinogenic amino acid derivative resulting from reaction of D-tyrosine at the amino group or the carboxy group, or from the replacement of any hydrogen of D-tyrosine by a heteroatom. monarch-merged.owl D-tyrosine derivatives owl:Class CHEBI:84133 biolink:NamedThing D-serine derivative monarch-merged.owl owl:Class CHEBI:84143 biolink:NamedThing D-phenylalanine derivative A non-proteinogenic amino acid derivative resulting from reaction of D-phenylalanine at the amino group or the carboxy group, or from the replacement of any hydrogen of D-phenylalanine by a heteroatom. monarch-merged.owl D-phenylalanine derivatives owl:Class CHEBI:84185 biolink:NamedThing D-proline derivative A non-proteinogenic amino acid derivative resulting from reaction of D-proline at the amino group or the carboxy group, or from the replacement of any hydrogen of D-proline by a heteroatom. monarch-merged.owl D-proline derivatives chebi_ontology owl:Class CHEBI:85139 biolink:NamedThing beta-amino acid ester monarch-merged.owl owl:Class CHEBI:136510 biolink:NamedThing biliverdin delta(1-) monarch-merged.owl owl:Class CHEBI:57845 biolink:NamedThing preuroporphyrinogen(8-) monarch-merged.owl owl:Class CHEBI:57899 biolink:NamedThing 15,16-dihydrobiliverdin(2-) monarch-merged.owl owl:Class CHEBI:58716 biolink:NamedThing red chlorophyll catabolite(2-) monarch-merged.owl owl:Class CHEBI:58719 biolink:NamedThing primary fluorescent chlorophyll catabolite(2-) monarch-merged.owl owl:Class CHEBI:61796 biolink:NamedThing dinoflagellate luciferin(1-) monarch-merged.owl owl:Class CHEBI:15602 biolink:NamedThing (2S)-2-[(R)-1-carboxyethylamino]pentanoate monarch-merged.owl owl:Class CHEBI:156548 biolink:NamedThing kainate(1-) monarch-merged.owl owl:Class CHEBI:17774 biolink:NamedThing pimelate(1-) monarch-merged.owl owl:Class CHEBI:30779 biolink:NamedThing succinate(1-) monarch-merged.owl owl:Class CHEBI:30782 biolink:NamedThing acetylenedicarboxylate(1-) monarch-merged.owl owl:Class CHEBI:30795 biolink:NamedThing malonate(1-) monarch-merged.owl carboxyacetate|Hmalo|HOOC-CH2-COO(-)|Malonic acid, conjugate base -1 C3H3O4 InChI=1S/C3H4O4/c4-2(5)1-3(6)7/h1H2,(H,4,5)(H,6,7)/p-1 OFOBLEOULBTSOW-UHFFFAOYSA-M 103.05352 103.00368 OC(=O)CC([O-])=O Beilstein:3904186|Gmelin:324637 chebi_ontology owl:Class CHEBI:30800 biolink:NamedThing phthalate(1-) monarch-merged.owl owl:Class CHEBI:30801 biolink:NamedThing terephthalate(1-) monarch-merged.owl owl:Class CHEBI:30833 biolink:NamedThing adipate(1-) monarch-merged.owl owl:Class CHEBI:30843 biolink:NamedThing oxomalonate(1-) monarch-merged.owl owl:Class CHEBI:30844 biolink:NamedThing hydroxymalonate(1-) monarch-merged.owl owl:Class CHEBI:30861 biolink:NamedThing methylmalonate(1-) A dicarboxylic acid monoanion resulting from the removal of a proton from one of the carboxylic acid groups of methylmalonic acid. monarch-merged.owl 2-carboxypropanoate -1 C4H5O4 InChI=1S/C4H6O4/c1-2(3(5)6)4(7)8/h2H,1H3,(H,5,6)(H,7,8)/p-1 ZIYVHBGGAOATLY-UHFFFAOYSA-M 117.08010 117.01933 CC(C(O)=O)C([O-])=O Gmelin:142213|Beilstein:5499681|Reaxys:5499681 chebi_ontology owl:Class CHEBI:30916 biolink:NamedThing 2-oxoglutarate(1-) A dicarboxylic acid monoanion resulting from selective deprotonation of the 1-carboxy group of 2-oxoglutaric acid. monarch-merged.owl 2-ketoglutarate|4-carboxy-2-oxobutanoate -1 C5H5O5 InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)/p-1 KPGXRSRHYNQIFN-UHFFFAOYSA-M 145.09020 145.01425 OC(=O)CCC(=O)C([O-])=O Reaxys:4132418|Beilstein:4132418|Gmelin:2159365 chebi_ontology owl:Class CHEBI:30920 biolink:NamedThing 3-hydroxy-3-methylglutarate(1-) A dicarboxylic acid monoanion resulting from the removal of a proton from one of the carboxylic acid groups of 3-hydroxy-3-methylglutaric acid. monarch-merged.owl 4-carboxy-3-hydroxy-3-methylbutanoate -1 C6H9O5 InChI=1S/C6H10O5/c1-6(11,2-4(7)8)3-5(9)10/h11H,2-3H2,1H3,(H,7,8)(H,9,10)/p-1 NPOAOTPXWNWTSH-UHFFFAOYSA-M 161.13270 161.04555 CC(O)(CC(O)=O)CC([O-])=O chebi_ontology owl:Class CHEBI:35384 biolink:NamedThing idarate(1-) monarch-merged.owl owl:Class CHEBI:35389 biolink:NamedThing altrarate(1-) monarch-merged.owl owl:Class CHEBI:35390 biolink:NamedThing galactarate(1-) monarch-merged.owl owl:Class CHEBI:35453 biolink:NamedThing 5-dehydro-4-deoxy-D-glucarate(1-) monarch-merged.owl owl:Class CHEBI:35694 biolink:NamedThing cyclobutane-1,1-dicarboxylate(1-) monarch-merged.owl owl:Class CHEBI:35907 biolink:NamedThing glutarate(1-) A dicarboxylic acid monoanion that is the conjugate base of glutaric acid. monarch-merged.owl 4-carboxybutanoate|hydrogen glutarate -1 C5H7O4 InChI=1S/C5H8O4/c6-4(7)2-1-3-5(8)9/h1-3H2,(H,6,7)(H,8,9)/p-1 JFCQEDHGNNZCLN-UHFFFAOYSA-M 131.10668 131.03498 OC(=O)CCCC([O-])=O Reaxys:3904478|Beilstein:3904478|Gmelin:326031 CHEBI:35906|CHEBI:30922 chebi_ontology owl:Class CHEBI:36148 biolink:NamedThing 4-hydroxy-2-oxoglutarate(1-) monarch-merged.owl owl:Class CHEBI:36462 biolink:NamedThing glutaconate(1-) monarch-merged.owl owl:Class CHEBI:36501 biolink:NamedThing (2Z,4Z)-5-carboxypenta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:36504 biolink:NamedThing 5-carboxypenta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:36531 biolink:NamedThing (2Z,4E)-5-carboxy-2,3,5-trichloropenta-2,4-dienoate monarch-merged.owl owl:Class CHEBI:37155 biolink:NamedThing hydrogen butenedioate monarch-merged.owl owl:Class CHEBI:46827 biolink:NamedThing carboxypyridinecarboxylate monarch-merged.owl owl:Class CHEBI:46904 biolink:NamedThing oxalate(1-) A dicarboxylic acid monoanion that is the conjugate base of oxalic acid. monarch-merged.owl Hox|carboxyformate|hydrogen ethanedioate|hydrogen oxalate -1 C2HO4 InChI=1S/C2H2O4/c3-1(4)2(5)6/h(H,3,4)(H,5,6)/p-1 MUBZPKHOEPUJKR-UHFFFAOYSA-M 89.02694 88.98803 OC(=O)C([O-])=O Beilstein:3601755|Gmelin:49515 chebi_ontology owl:Class CHEBI:50680 biolink:NamedThing methotrexate(1-) monarch-merged.owl (2S)-4-carboxy-2-(4-{[(2,4-diaminopteridin-6-yl)methyl](methyl)amino}benzamido)butanoate owl:Class CHEBI:58406 biolink:NamedThing 4-amino-4-deoxychorismate(1-) monarch-merged.owl owl:Class CHEBI:58767 biolink:NamedThing N-acetyl-LL-2,6-diaminopimelate(1-) monarch-merged.owl owl:Class CHEBI:58792 biolink:NamedThing 2-azaniumyl-2-deoxyisochorismate monarch-merged.owl owl:Class CHEBI:58948 biolink:NamedThing aryl(methyl)malonate(1-) monarch-merged.owl owl:Class CHEBI:6331 biolink:NamedThing erythro-4-hydroxy-L-glutamate(1-) monarch-merged.owl owl:Class CHEBI:77803 biolink:NamedThing 2-ammonio-3-(3-oxoprop-1-enyl)but-2-enedioate(1-) monarch-merged.owl owl:Class CHEBI:77859 biolink:NamedThing 2-ammoniomuconate(1-) monarch-merged.owl owl:Class CHEBI:77875 biolink:NamedThing iminoaspartate(1-) monarch-merged.owl owl:Class CHEBI:136511 biolink:NamedThing manganese dioxide monarch-merged.owl owl:Class CHEBI:25154 biolink:NamedThing manganese molecular entity monarch-merged.owl manganese compounds|manganese molecular entity|manganese molecular entities chebi_ontology owl:Class CHEBI:35115 biolink:NamedThing elemental manganese monarch-merged.owl chebi_ontology owl:Class CHEBI:86071 biolink:NamedThing caffeyl alcohol monarch-merged.owl owl:Class CHEBI:38298 biolink:NamedThing benzodioxoles monarch-merged.owl owl:Class CHEBI:28821 biolink:NamedThing piperine monarch-merged.owl owl:Class CHEBI:55467 biolink:NamedThing dalpatein beta-D-apiofuranosyl-(1->6)-beta-D-glucopyranoside monarch-merged.owl owl:Class CHEBI:61312 biolink:NamedThing 5-hydroxypseudobaptigenin monarch-merged.owl owl:Class CHEBI:8602 biolink:NamedThing pseudobaptigenin monarch-merged.owl owl:Class CHEBI:47790 biolink:NamedThing furofuran monarch-merged.owl owl:Class CHEBI:136544 biolink:NamedThing alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl(1-) group monarch-merged.owl owl:Class CHEBI:24921 biolink:NamedThing isoquinoline alkaloid Any alkaloid that has a structure based on an isoquinoline nucleus. They are derived from the amino acids like tyrosine and phenylalanine. monarch-merged.owl isoquinoline alkaloids chebi_ontology owl:Class CHEBI:14027 biolink:NamedThing corydaline monarch-merged.owl owl:Class CHEBI:17048 biolink:NamedThing nororientaline monarch-merged.owl owl:Class CHEBI:17079 biolink:NamedThing (S)-3'-hydroxy-N-methylcoclaurine monarch-merged.owl owl:Class CHEBI:18399 biolink:NamedThing codeinone monarch-merged.owl owl:Class CHEBI:25418 biolink:NamedThing morphinane alkaloid monarch-merged.owl owl:Class CHEBI:36380 biolink:NamedThing emetan monarch-merged.owl emetan 0 C25H32N2 InChI=1S/C25H32N2/c1-2-18-17-27-14-12-20-8-4-6-10-23(20)25(27)16-21(18)15-24-22-9-5-3-7-19(22)11-13-26-24/h3-10,18,21,24-26H,2,11-17H2,1H3/t18-,21-,24+,25-/m0/s1 KSQYVPHTTWSOHG-CKBKHPSWSA-N 360.53506 360.25655 [H][C@]1(C[C@@]2([H])NCCc3ccccc23)C[C@]2([H])N(CCc3ccccc23)C[C@@H]1CC chebi_ontology owl:Class CHEBI:38517 biolink:NamedThing benzophenanthridine alkaloid monarch-merged.owl owl:Class CHEBI:38608 biolink:NamedThing dibenzazecine alkaloid monarch-merged.owl owl:Class CHEBI:4781 biolink:NamedThing emetine A pyridoisoquinoline comprising emetam having methoxy substituents at the 6'-, 7'-, 10- and 11-positions. It is an antiprotozoal agent and emetic. It inhibits SARS-CoV2, Zika and Ebola virus replication and displays antimalarial, antineoplastic and antiamoebic properties. monarch-merged.owl cephaeline methyl ether|6',7',10,11-tetramethoxyemetan|Emetan|methyl cephaeline|Emetin|cephaline-O-methyl ether|Emetine 0 C29H40N2O4 InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1 AUVVAXYIELKVAI-CKBKHPSWSA-N 480.63898 480.29881 [H][C@]1(C[C@@]2([H])NCCc3cc(OC)c(OC)cc23)C[C@]2([H])N(CCc3cc(OC)c(OC)cc23)C[C@@H]1CC Drug_Central:1001|PMID:29872540|Beilstein:6253162|PMID:14119536|PMID:31775307|PMID:32245264|PMID:31436297|PMID:32251767|KEGG:C09421|PMID:16109351|PMID:31964796|CAS:483-18-1|PMID:17094176|PMID:31734270|KNApSAcK:C00001849|Reaxys:100834|Beilstein:100834|PMID:31533472|DrugBank:DB13393|PMID:19227966|LINCS:LSM-2041|MetaCyc:CPD-14817|Wikipedia:Emetine chebi_ontology owl:Class CHEBI:136563 biolink:NamedThing (4Z,7Z,10Z,16Z,19Z)-13,14-epoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136569 biolink:NamedThing (4Z,7Z,13Z,16Z,19Z)-10,11-epoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:72653 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z)-19,20-epoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:72855 biolink:NamedThing (4Z,7Z,10Z,13Z,19Z)-16,17-epoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136564 biolink:NamedThing (R)-dyspropterin monarch-merged.owl owl:Class CHEBI:17804 biolink:NamedThing dyspropterin monarch-merged.owl owl:Class CHEBI:136570 biolink:NamedThing (6R)-5,6,7,8-tetrahydrobiopterin monarch-merged.owl owl:Class CHEBI:52447 biolink:NamedThing tetrahydrodictyopterin monarch-merged.owl owl:Class CHEBI:59560 biolink:NamedThing sapropterin A tetrahydropterin that is 2-amino-5,6,7,8-tetrahydropteridin-4(3H)-one in which a hydrogen at position 6 is substituted by a 1,2-dihydroxypropyl group (6R,1'R,2'S-enantiomer). monarch-merged.owl R-THBP|sapropterin|6R-5,6,7,8-tetrahydrobiopterin|5,6,7,8-Tetrahydrobiopterin|tetrahydrobiopterin|(6R)-L-erythro-tetrahydrobiopterin|(6R)-2-amino-6-[(1R,2S)-1,2-dihydroxypropyl]-5,6,7,8-tetrahydropteridin-4(3H)-one|sapropterinum|(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin|(-)-(6R)-2-amino-6-((1R,2S)-1,2-dihydroxypropyl)-5,6,7,8-tetrahydro-4(3H)-pteridinone|sapropterina|6R-L-5,6,7,8-tetrahydrobiopterin|6R-BH4|2-Amino-6-(1,2-dihydroxypropyl)-5,6,7,8-tetrahydoro-4(1H)-pteridinone owl:Class CHEBI:64241 biolink:NamedThing (6R)-L-threo-tetrahydrobiopterin monarch-merged.owl owl:Class CHEBI:136572 biolink:NamedThing (6R)-5,10-methylenetetrahydrofolate poly(gamma-L-glutamate) macromolecule monarch-merged.owl owl:Class CHEBI:136573 biolink:NamedThing (7Z,10Z,13Z,16Z)-19,20-epoxydocosatetraenoic acid monarch-merged.owl owl:Class CHEBI:136575 biolink:NamedThing (7Z,10Z,13Z,19Z)-16,17-epoxydocosatetraenoic acid monarch-merged.owl owl:Class CHEBI:136576 biolink:NamedThing (7Z,10Z,16Z,19Z)-13,14-epoxydocosatetraenoic acid monarch-merged.owl owl:Class CHEBI:136583 biolink:NamedThing (7Z,13Z,16Z,19Z)-10,11-epoxydocosatetraenoic acid monarch-merged.owl owl:Class CHEBI:167107 biolink:NamedThing estrane conjugate monarch-merged.owl owl:Class CHEBI:136634 biolink:NamedThing estrone 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136635 biolink:NamedThing 16alpha-hydroxyestrone 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136636 biolink:NamedThing 16alpha-hydroxyestrone 16-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136641 biolink:NamedThing 17beta-estradiol 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136650 biolink:NamedThing estriol 16-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136584 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z)-20-hydroxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:91274 biolink:NamedThing (7Z,10Z,13R,14E,16Z,19Z)-13-hydroxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136591 biolink:NamedThing D-erythronate monarch-merged.owl owl:Class CHEBI:136598 biolink:NamedThing 3-amino-D-alanine monarch-merged.owl owl:Class CHEBI:136679 biolink:NamedThing (R)-2-amino-4-oxopentanoic acid monarch-merged.owl owl:Class CHEBI:16439 biolink:NamedThing N-(carboxymethyl)-D-alanine monarch-merged.owl owl:Class CHEBI:17092 biolink:NamedThing 3-chloro-D-alanine monarch-merged.owl owl:Class CHEBI:136602 biolink:NamedThing (1->4)-6-phospho-alpha-D-glucan monarch-merged.owl owl:Class CHEBI:71298 biolink:NamedThing glucan derivative monarch-merged.owl owl:Class CHEBI:24317 biolink:NamedThing L-glutamine derivative monarch-merged.owl owl:Class CHEBI:139506 biolink:NamedThing N(5)-phospho-L-glutamine monarch-merged.owl owl:Class CHEBI:17008 biolink:NamedThing N(2)-acyl-L-glutamine monarch-merged.owl owl:Class CHEBI:21844 biolink:NamedThing N(5)-alkyl-L-glutamine monarch-merged.owl owl:Class CHEBI:79289 biolink:NamedThing N(5)-phenyl-L-glutamine monarch-merged.owl owl:Class CHEBI:84215 biolink:NamedThing gamma-glutamyltyramine monarch-merged.owl owl:Class CHEBI:25018 biolink:NamedThing L-leucine derivative monarch-merged.owl owl:Class CHEBI:28282 biolink:NamedThing N-benzyloxycarbonyl-L-leucine monarch-merged.owl owl:Class CHEBI:35352 biolink:NamedThing organonitrogen compound Any heteroorganic entity containing at least one carbon-nitrogen bond. monarch-merged.owl organonitrogens|organonitrogen compounds chebi_ontology owl:Class CHEBI:22315 biolink:NamedThing alkaloid Any of the naturally occurring, basic nitrogen compounds (mostly heterocyclic) occurring mostly in the plant kingdom, but also found in bacteria, fungi, and animals. By extension, certain neutral compounds biogenetically related to basic alkaloids are also classed as alkaloids. Amino acids, peptides, proteins, nucleotides, nucleic acids, amino sugars and antibiotics are not normally regarded as alkaloids. Compounds in which the nitrogen is exocyclic (dopamine, mescaline, serotonin, etc.) are usually classed as amines rather than alkaloids. monarch-merged.owl alcaloides|Alkaloid|alcaloide|Alkaloide|alkaloids Wikipedia:Alkaloid chebi_ontology owl:Class CHEBI:22506 biolink:NamedThing aminoglycan monarch-merged.owl aminoglycans chebi_ontology owl:Class CHEBI:23424 biolink:NamedThing cyanides monarch-merged.owl owl:Class CHEBI:24436 biolink:NamedThing guanidines Any organonitrogen compound containing a carbamimidamido (guanidino) group. Guanidines have the general structure (R(1)R(2)N)(R(3)R(4)N)C=N-R(5) and are related structurally to amidines and ureas. monarch-merged.owl chebi_ontology owl:Class CHEBI:26469 biolink:NamedThing quaternary nitrogen compound A nitrogen molecular entity that is electronically neutral but which contains a quaternary nitrogen. monarch-merged.owl chebi_ontology owl:Class CHEBI:26955 biolink:NamedThing thiocyanates monarch-merged.owl owl:Class CHEBI:29195 biolink:NamedThing cyanate monarch-merged.owl [C(N)O](-)|cyanate ion|Cyanat|OCN(-)|Zyanat|nitridooxidocarbonate(1-)|cyanate -1 CNO InChI=1S/CHNO/c2-1-3/h3H/p-1 XLJMAIOERFSOGZ-UHFFFAOYSA-M 42.01684 41.99854 [O-]C#N CAS:71000-82-3|UM-BBD_compID:c0568|CAS:661-20-1|KEGG:C01417 CHEBI:23419|CHEBI:14037 chebi_ontology owl:Class CHEBI:35353 biolink:NamedThing isocyanide monarch-merged.owl owl:Class CHEBI:35359 biolink:NamedThing carboxamidine monarch-merged.owl owl:Class CHEBI:36816 biolink:NamedThing oxime O-ether monarch-merged.owl owl:Class CHEBI:37598 biolink:NamedThing nitrogen mustard monarch-merged.owl owl:Class CHEBI:37622 biolink:NamedThing carboxamide An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom. monarch-merged.owl carboxamides|primary carboxamide 0 CNOR3 42.01680 41.99799 [*]C(=O)N([*])[*] CHEBI:35354|CHEBI:35355 chebi_ontology owl:Class CHEBI:38101 biolink:NamedThing organonitrogen heterocyclic compound Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms. monarch-merged.owl organonitrogen heterocyclic compounds|heterocyclic organonitrogen compounds chebi_ontology owl:Class CHEBI:38532 biolink:NamedThing hydrazone monarch-merged.owl owl:Class CHEBI:48378 biolink:NamedThing carboximidic acid monarch-merged.owl carboximidic acids|carboximidic acid chebi_ontology owl:Class CHEBI:53091 biolink:NamedThing carbodiimide monarch-merged.owl owl:Class CHEBI:53212 biolink:NamedThing isocyanates Organonitrogen compounds that are derivatives of isocyanic acid; compounds containing the isocyanate functional group -N=C=O (as opposed to the cyanate group, -O-C#N). monarch-merged.owl iso-cyanates chebi_ontology owl:Class CHEBI:60481 biolink:NamedThing N',N'',N'''-triacetylfusarinine C monarch-merged.owl owl:Class CHEBI:61111 biolink:NamedThing aminophosphonate monarch-merged.owl owl:Class CHEBI:75769 biolink:NamedThing B vitamin Any member of the group of eight water-soluble vitamins originally thought to be a single compound (vitamin B) that play important roles in cell metabolism. The group comprises vitamin B1, B2, B3, B5, B6, B7, B9, and B12 (Around 20 other compounds were once thought to be B vitamins but are no longer classified as such).|Any of the group of eight water-soluble vitamins originally thought to be a single compound (vitamin B) that play important roles in cell metabolism. The group comprises vitamin B1, B2, B3, B5, B6, B7, B9, and B12. (Around 20 other compounds were once thought to be B vitamins but are no longer classified as such.)|Any member of the group of eight water-soluble vitamins originally thought to be a single compound (vitamin B) that play important roles in cell metabolism. The group comprises of vitamin B1, B2, B3, B5, B6, B7, B9, and B12 (Around 20 other compounds were once thought to be B vitamins but are no longer classified as such). monarch-merged.owl B vitamins|B-group vitamins|B-group vitamin|vitamin B PMID:22743781|PMID:23449527|PMID:23238962|PMID:23690582|Wikipedia:B_vitamin|MetaCyc:B-vitamins|PMID:23093174|PMID:23462586 chebi_ontology owl:Class CHEBI:79313 biolink:NamedThing glycosinolic acid monarch-merged.owl owl:Class CHEBI:80992 biolink:NamedThing thiohydroximic acid monarch-merged.owl owl:Class CHEBI:83821 biolink:NamedThing amino acid derivative Any derivative of an amino acid resulting from reaction at an amino group, carboxy group, side-chain functional group, or from the replacement of any hydrogen by a heteroatom. The definition normally excludes peptides containing amino acid residues. monarch-merged.owl modified amino acids|amino acid derivatives CHEBI:25359 chebi_ontology owl:Class CHEBI:136624 biolink:NamedThing 2,6-O-bis(alpha-D-mannopyranosyl)-1-phosphatidyl-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:136625 biolink:NamedThing 2-O-(alpha-D-mannopyranosyl)-6-O-(6-acyl-alpha-D-mannopyranosyl)-1-phosphatidyl-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:137009 biolink:NamedThing 1-(1Z-octadecenyl)-sn-glycero-3-phospho-(N-hexadecanoyl)ethanolamine(1-) monarch-merged.owl owl:Class CHEBI:137010 biolink:NamedThing 1-(1Z-octadecenyl)-sn-glycero-3-phospho-(N-oleoyl)ethanolamine(1-) monarch-merged.owl owl:Class CHEBI:137016 biolink:NamedThing 1-(1Z-octadecenyl)-sn-glycero-3-phospho-(N-arachidonoyl)ethanolamine(1-) monarch-merged.owl owl:Class CHEBI:138139 biolink:NamedThing 2,3-bis-O-phytanyl-sn-glycerol 1-phospholipid anion monarch-merged.owl owl:Class CHEBI:138140 biolink:NamedThing 2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phospholipid anion monarch-merged.owl owl:Class CHEBI:138662 biolink:NamedThing N-hexadecanoyl-O-(1-octadecanoyl-sn-glycero-3-phospho)-L-serine(2-) monarch-merged.owl owl:Class CHEBI:138663 biolink:NamedThing N-hexadecanoyl-1-[(1Z)-octadecenoyl]-2-oleoyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:139157 biolink:NamedThing (S,S)-2-oleoylglycero-1-phospho-1'-glycerol(1-) monarch-merged.owl owl:Class CHEBI:139230 biolink:NamedThing (R,R)-2-oleoylglycero-1-phospho-1'-glycerol(1-) monarch-merged.owl owl:Class CHEBI:140403 biolink:NamedThing N-acyl-1-[(1Z)-alkenyl]-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:140451 biolink:NamedThing N-acyl-1-[(1Z)-alkenyl]-2-acyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:147334 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol anion derivative A phosphatidylinositol anion where the inositol is either not phosphorylated or phosphorylated at position 4 and/or position 5; major species at pH 7.3. monarch-merged.owl 1,2-diacyl-sn-glycero-3-phospho-1D-myo-inositol anion derivative|a 1,2-diacyl-sn-glycero-3-phospho-1D-myo-inositol derivative -1 C11H14O13PR4 385.195 385.01720 [C@@H]1([C@@H]([C@@H]([C@@H]([C@H]([C@@H]1O*)O*)O)O)OP(OC[C@@H](COC(=O)*)OC(=O)*)(=O)[O-])O chebi_ontology owl:Class CHEBI:147335 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol-3-phosphate anion derivative A phosphatidylinositol anion where the inositol is phosphorylated at position 3 and either phosphorylated or not at position 4 and/or position 5; major species at pH 7.3. monarch-merged.owl a 1,2-diacyl-sn-glycero-3-phospho-1D-myo-inositol-3-phosphate derivative|1,2-diacyl-sn-glycero-3-phospho-1D-myo-inositol-3-phosphate anion derivative -3 C11H13O16P2R4 463.159 462.96788 [C@@H]1([C@@H]([C@@H]([C@@H]([C@H]([C@@H]1O*)O*)OP(=O)([O-])[O-])O)OP(OC[C@@H](COC(=O)*)OC(=O)*)(=O)[O-])O chebi_ontology owl:Class CHEBI:57534 biolink:NamedThing 1-acylglycerone 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:57658 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate(5-) monarch-merged.owl owl:Class CHEBI:57739 biolink:NamedThing phosphatidate(2-) monarch-merged.owl owl:Class CHEBI:57795 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 5-phosphate(3-) monarch-merged.owl owl:Class CHEBI:57836 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate(7-) The heptaanion of a 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate; major species at pH 7.3. monarch-merged.owl 2,3-bis(alkanoyloxy)propyl (1S,2S,3R,4S,5S,6S)-2,6-dihydroxy-3,4,5-tris(phosphonatooxy)cyclohexyl phosphate|a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,4,5-trisphosphate) -7 C11H13O22P4R2 621.10280 620.88489 [H][C@@](COC([*])=O)(COP([O-])(=O)O[C@@H]1[C@H](O)[C@H](OP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@H]1O)OC([*])=O MetaCyc:PHOSPHATIDYLINOSITOL-345-TRIPHOSPHATE chebi_ontology owl:Class CHEBI:57880 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol(1-) The conjugate base of a 1-phosphatidyl-1D-myo-inositol; major species at pH 7.3. monarch-merged.owl 2,3-bis(alkanoyloxy)propyl (1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl phosphate|1-phosphatidyl-1D-myo-inositol anions|a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol)|1-phosphatidyl-1D-myo-inositol anion -1 C11H16O13PR2 387.211 387.03285 [C@@H]1([C@@H]([C@@H]([C@@H]([C@H]([C@@H]1O)O)O)O)OP(OC[C@@H](COC(=O)*)OC(=O)*)(=O)[O-])O chebi_ontology owl:Class CHEBI:57923 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate(5-) monarch-merged.owl owl:Class CHEBI:58088 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 3-phosphate(3-) monarch-merged.owl owl:Class CHEBI:58178 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 4-phosphate(3-) monarch-merged.owl owl:Class CHEBI:58332 biolink:NamedThing CDP-diacylglycerol(2-) monarch-merged.owl owl:Class CHEBI:58456 biolink:NamedThing 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate(5-) The pentaanion of a 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate. monarch-merged.owl 2,3-bis(alkanoyloxy)propyl (1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonatooxy)cyclohexyl phosphate|a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) -5 C11H14O19P3R2 543.139 542.93421 O[C@@H]1[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@@H](O)[C@@H]1OP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O CHEBI:58597 chebi_ontology owl:Class CHEBI:59996 biolink:NamedThing 1,2-diacyl-sn-glycerol 3-diphosphate(3-) monarch-merged.owl owl:Class CHEBI:60110 biolink:NamedThing 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate(3-) monarch-merged.owl owl:Class CHEBI:60523 biolink:NamedThing phosphatidylglycerol(1-) monarch-merged.owl owl:Class CHEBI:63582 biolink:NamedThing 1-palmitoylglycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:64781 biolink:NamedThing 3-heptaprenyl-sn-glycero-1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:64916 biolink:NamedThing inositol phosphoceramide(1-) monarch-merged.owl owl:Class CHEBI:64992 biolink:NamedThing inositol phosphomannosylinositol phosphophytoceramide(2-) monarch-merged.owl owl:Class CHEBI:64997 biolink:NamedThing mannosylinositol phosphorylceramide(1-) monarch-merged.owl owl:Class CHEBI:65092 biolink:NamedThing 1-monolysocardiolipin(2-) monarch-merged.owl owl:Class CHEBI:68490 biolink:NamedThing alkyl,acyl-sn-glycero-3-phospho-L-serine(1-) monarch-merged.owl owl:Class CHEBI:68497 biolink:NamedThing lysophosphatidylserine(1-) monarch-merged.owl owl:Class CHEBI:68498 biolink:NamedThing lysophosphatidyl-1D-myo-inositol(1-) monarch-merged.owl owl:Class CHEBI:685 biolink:NamedThing 1-organyl-2-acetyl-sn-glycero-3-phospholipid(1-) monarch-merged.owl owl:Class CHEBI:71517 biolink:NamedThing 2,3-bis-O-(geranylgeranyl)-sn-glycero-3-phospho-L-serine(1-) monarch-merged.owl owl:Class CHEBI:72682 biolink:NamedThing 1-lauroyl-sn-glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:72683 biolink:NamedThing 1-myristoyl-sn-glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:73125 biolink:NamedThing 2,3-bis-O-phytanyl-sn-glycerol 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:73315 biolink:NamedThing 1-alkylglycerone 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:74006 biolink:NamedThing 1-archaetidyl-1D-myo-inositol 3-phosphate(3-) monarch-merged.owl owl:Class CHEBI:74853 biolink:NamedThing 2,3-bis-O-phytanyl-sn-glycero-3-phospho-L-serine(1-) monarch-merged.owl owl:Class CHEBI:76171 biolink:NamedThing 1-acyl-2-(10-methylenealkanoyl)-sn-3-glycerophospholipid monarch-merged.owl owl:Class CHEBI:76529 biolink:NamedThing glycerophosphoglycerophosphoglycerol(2-) monarch-merged.owl owl:Class CHEBI:76530 biolink:NamedThing sn-glycero-3-monophosphate(2-) monarch-merged.owl owl:Class CHEBI:76590 biolink:NamedThing 1-organyl-2-lyso-sn-glycero-3-phospholipid(1-) monarch-merged.owl owl:Class CHEBI:76593 biolink:NamedThing 1-acyl-2-[(Z)-9,10-enoyl]-sn-glycero-3-phospholipid(1-) monarch-merged.owl owl:Class CHEBI:76594 biolink:NamedThing 1-acyl-2-(9,10-methyleneacyl)-sn-glycero-3-phospholipid(1-) monarch-merged.owl owl:Class CHEBI:76941 biolink:NamedThing sphingoid 1-phosphate(1-) A generic class of anionic phospholipids, encompassing phosphorylated derivatives of sphinganine, its homologues and stereoisomers, as well as the hydroxy and unsaturated derivatives of these compounds. monarch-merged.owl a sphingoid 1-phosphate -1 C3H8NO5PR 169.073 169.01401 [NH3+][C@@H](COP([O-])([O-])=O)[C@H](O)[*] chebi_ontology owl:Class CHEBI:77717 biolink:NamedThing 2,2'-lysobisphosphatidate monarch-merged.owl owl:Class CHEBI:77756 biolink:NamedThing 2-O-glutaroyl-1-O-palmitoyl-sn-glycero-3-phosphocholine(1-) monarch-merged.owl owl:Class CHEBI:77787 biolink:NamedThing 1-O-palmityl-2-desoxy-2-amino-sn-glycero-3-phosphate(1-) monarch-merged.owl owl:Class CHEBI:78185 biolink:NamedThing glycero-3-monophosphate(2-) monarch-merged.owl owl:Class CHEBI:78210 biolink:NamedThing monoacylglycero-3-phosphoglycerol(1-) monarch-merged.owl owl:Class CHEBI:78221 biolink:NamedThing monoacylglycero-3-phospho-L-serine(1-) monarch-merged.owl owl:Class CHEBI:78225 biolink:NamedThing alkyl,acylglycero-3-phospho-L-serine(1-) monarch-merged.owl owl:Class CHEBI:78231 biolink:NamedThing 1,2-diacylglycero-3-phospho-1-inositol(1-) An anionic phospholipid that is the conjugate base of a 1,2-diacylglycero-3-phospho-1-inositol; major species at pH 7.3. monarch-merged.owl 1,2-diacyl-glycero-3-phospho-1-inositol -1 C11H16O13PR2 387.211 387.03285 OC1C(O)C(O)C(OP([O-])(=O)OCC(COC([*])=O)OC([*])=O)C(O)C1O chebi_ontology owl:Class CHEBI:78234 biolink:NamedThing monoacylglycero-3-phospho-1-inositol(1-) monarch-merged.owl owl:Class CHEBI:78993 biolink:NamedThing 1,2-dipalmitoylglycero-3-phospho-(1'-D-myo-inositol-3'-phosphate)(3-) monarch-merged.owl owl:Class CHEBI:83189 biolink:NamedThing phosphatidylinositol monophosphate(3-) monarch-merged.owl owl:Class CHEBI:83191 biolink:NamedThing phosphatidylinositol bisphosphate(5-) An anionic phospholipid obtained by deprotonation of the phospho groups of any phosphatidylinositol bisphosphate; major species at pH 7.3. monarch-merged.owl 1,2-diacylglycero-3-phospho-1-inositol bisphosphate(5-)|phosphatidylinositol bisphosphate 0 C11H14O19P3R2 543.139 542.93421 chebi_ontology owl:Class CHEBI:83193 biolink:NamedThing phosphatidylinositol trisphosphate(7-) An anionic phospholipid obtained by deprotonation of the phospho groups of any phosphatidylinositol trisphosphate; major species at pH 7.3. monarch-merged.owl 1,2-diacylglycero-3-phospho-1-inositol trisphosphate(7-) -7 C11H13O22P4R2 621.103 620.88489 chebi_ontology owl:Class CHEBI:83195 biolink:NamedThing glycerophosphoglycerophosphate anion monarch-merged.owl owl:Class CHEBI:83237 biolink:NamedThing acylglycerophosphoacylglycerol(1-) monarch-merged.owl owl:Class CHEBI:84672 biolink:NamedThing phosphatidylethanol(1-) monarch-merged.owl owl:Class CHEBI:85216 biolink:NamedThing N-acyllysophosphatidylethanolamine(1-) monarch-merged.owl owl:Class CHEBI:85225 biolink:NamedThing N-acyl-sn-glycero-3-phosphoethanolamine(1-) monarch-merged.owl owl:Class CHEBI:88053 biolink:NamedThing phosphatidyl-myo-inositol 6-acylmannoside(1-) monarch-merged.owl owl:Class CHEBI:136626 biolink:NamedThing (8R,9E,11Z,14Z)-8-hydroperoxyicosatrienoic acid monarch-merged.owl owl:Class CHEBI:136630 biolink:NamedThing (8Z,11Z,14Z)-10-hydroperoxyicosatrienoic acid monarch-merged.owl owl:Class CHEBI:136631 biolink:NamedThing (8Z,12E,14Z)-11-hydroperoxyicosatrienoic acid monarch-merged.owl owl:Class CHEBI:136632 biolink:NamedThing (5Z,8R,9Z,11Z,14Z)-8,9-epoxyicosatetraenoic acid monarch-merged.owl owl:Class CHEBI:137193 biolink:NamedThing (5Z,11Z,14Z,17Z)-8,9-epoxyicosatetraenoic acid monarch-merged.owl owl:Class CHEBI:137267 biolink:NamedThing (5Z,8Z,14Z,17Z)-11,12-epoxyicosatetraenoic acid monarch-merged.owl owl:Class CHEBI:137269 biolink:NamedThing (5Z,8Z,11Z,17Z)-14,15-epoxyicosatetraenoic acid monarch-merged.owl owl:Class CHEBI:72853 biolink:NamedThing 17(18)-EpETE monarch-merged.owl owl:Class CHEBI:136639 biolink:NamedThing testosterone 17-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136642 biolink:NamedThing 17alpha-estradiol 17-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136649 biolink:NamedThing estriol 3-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:136673 biolink:NamedThing epitestosterone 17-O-(beta-D-glucuronide)(1-) monarch-merged.owl owl:Class CHEBI:139274 biolink:NamedThing calcitriol 25-O-(beta-D-glucuronate) monarch-merged.owl owl:Class CHEBI:139277 biolink:NamedThing calcidiol 25-O-(beta-D-glucuronate) monarch-merged.owl owl:Class CHEBI:139278 biolink:NamedThing calcidiol 3-O-(beta-D-glucuronate) monarch-merged.owl owl:Class CHEBI:167104 biolink:NamedThing seco-cholestane conjugate monarch-merged.owl owl:Class CHEBI:136640 biolink:NamedThing (3R)-1,2-didehydro-3-hydroxy-16-methoxy-2,3-dihydrotabersoninium monarch-merged.owl owl:Class CHEBI:138461 biolink:NamedThing (3R)-3-hydroxy-2,3-dihydrotabersoninium monarch-merged.owl owl:Class CHEBI:138462 biolink:NamedThing (3R)-1,2-didehydro-3-hydroxy-2,3-dihydrotabersoninium monarch-merged.owl owl:Class CHEBI:57893 biolink:NamedThing tabersoninium(1+) monarch-merged.owl owl:Class CHEBI:58193 biolink:NamedThing 3alpha(S)-strictosidinium(1+) monarch-merged.owl owl:Class CHEBI:58239 biolink:NamedThing 16-hydroxytabersoninium monarch-merged.owl owl:Class CHEBI:58485 biolink:NamedThing 3-hydroxy-16-methoxy-2,3-dihydrotabersoninium monarch-merged.owl owl:Class CHEBI:71487 biolink:NamedThing chanoclavine-I aldehyde(1+) monarch-merged.owl owl:Class CHEBI:77725 biolink:NamedThing 17-O-acetylnorajmaline(1+) monarch-merged.owl owl:Class CHEBI:136654 biolink:NamedThing 13(S)-HETE(1-) monarch-merged.owl owl:Class CHEBI:90850 biolink:NamedThing 13(S)-HODE(1-) monarch-merged.owl owl:Class CHEBI:136662 biolink:NamedThing (5Z,8R,9E,11Z,14Z,17Z)-8-hydroperoxyicosapentaenoic acid monarch-merged.owl owl:Class CHEBI:136672 biolink:NamedThing N-hexadecanoyl-1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:138239 biolink:NamedThing N-oleoyl-1,2-diacyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:78929 biolink:NamedThing N-hexadecanoylphosphatidylethanolamine monarch-merged.owl owl:Class CHEBI:78940 biolink:NamedThing N-palmitoyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85784 biolink:NamedThing N-arachidonoyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85790 biolink:NamedThing N,1,2-trioleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85791 biolink:NamedThing N-stearoyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85793 biolink:NamedThing N-myristoyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85794 biolink:NamedThing N-lauroyl-1,2-dioleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85796 biolink:NamedThing N-capryl-1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85797 biolink:NamedThing N-capryloyl-1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85798 biolink:NamedThing N-caproyl-1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85799 biolink:NamedThing N-butyryl-1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:85806 biolink:NamedThing N,1-dipalmitoyl-2-linoleoyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:136678 biolink:NamedThing 4',7-dihydroxyflavanone monarch-merged.owl owl:Class CHEBI:140331 biolink:NamedThing 4'-hydroxyflavanones monarch-merged.owl owl:Class CHEBI:28927 biolink:NamedThing sakuranetin monarch-merged.owl owl:Class CHEBI:50202 biolink:NamedThing naringenin monarch-merged.owl owl:Class CHEBI:50207 biolink:NamedThing sophoraflavanone B monarch-merged.owl owl:Class CHEBI:50208 biolink:NamedThing leachianone G monarch-merged.owl owl:Class CHEBI:50209 biolink:NamedThing sophoraflavanone G monarch-merged.owl owl:Class CHEBI:139323 biolink:NamedThing coelenterazine 2-hydroperoxide monarch-merged.owl owl:Class CHEBI:25179 biolink:NamedThing melanins monarch-merged.owl CHEBI:6727 chebi_ontology owl:Class CHEBI:26848 biolink:NamedThing tannin monarch-merged.owl owl:Class CHEBI:47724 biolink:NamedThing vancomycin aglycone monarch-merged.owl owl:Class CHEBI:4806 biolink:NamedThing (-)-epigallocatechin 3-gallate monarch-merged.owl owl:Class CHEBI:71535 biolink:NamedThing (1'S,5'S)-5'-hydroxyaverantin monarch-merged.owl owl:Class CHEBI:71536 biolink:NamedThing (1'S,5'R)-5'-hydroxyaverantin monarch-merged.owl owl:Class CHEBI:71637 biolink:NamedThing versiconal hemiacetal acetate monarch-merged.owl owl:Class CHEBI:71639 biolink:NamedThing versiconol monarch-merged.owl owl:Class CHEBI:71649 biolink:NamedThing (S)-5'-oxoaverantin monarch-merged.owl owl:Class CHEBI:71657 biolink:NamedThing versiconol acetate monarch-merged.owl owl:Class CHEBI:71662 biolink:NamedThing versiconal monarch-merged.owl owl:Class CHEBI:75291 biolink:NamedThing epsilon-rhodomycinone monarch-merged.owl owl:Class CHEBI:75311 biolink:NamedThing methyl aklanonate monarch-merged.owl owl:Class CHEBI:85142 biolink:NamedThing methyl nogalonate monarch-merged.owl owl:Class CHEBI:38749 biolink:NamedThing dihydroxyflavanone monarch-merged.owl owl:Class CHEBI:48025 biolink:NamedThing 3',5'-dihydroxyflavanone monarch-merged.owl owl:Class CHEBI:136687 biolink:NamedThing 2,3-bis-O-(geranylgeranyl)-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:16091 biolink:NamedThing dolichol monarch-merged.owl owl:Class CHEBI:26873 biolink:NamedThing terpenoid Any isoprenoid that is a natural product or related compound formally derived from isoprene units. Terpenoids may contain oxygen in various functional groups. This class is subdivided according to the number of carbon atoms in the parent terpene. The skeleton of terpenoids may differ from strict additivity of isoprene units by the loss or shift of a fragment, generally a methyl group. monarch-merged.owl Terpenoid|terpenoides|terpenoids|terpenoide Wikipedia:Terpenoid chebi_ontology owl:Class CHEBI:35186 biolink:NamedThing terpene A hydrocarbon of biological origin having carbon skeleton formally derived from isoprene [CH2=C(CH3)CH=CH2]. monarch-merged.owl terpenes|Terpen|terpenos|terpene|terpeno chebi_ontology owl:Class CHEBI:53183 biolink:NamedThing apo carotenoid monarch-merged.owl owl:Class CHEBI:88015 biolink:NamedThing archaeal dolichol monarch-merged.owl owl:Class CHEBI:37814 biolink:NamedThing dialkylglycerophosphoethanolamine monarch-merged.owl owl:Class CHEBI:15785 biolink:NamedThing 1-(alk-1-enyl)-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:17335 biolink:NamedThing 4-O-beta-D-glucosyl-4-coumaric acid monarch-merged.owl owl:Class CHEBI:17476 biolink:NamedThing 1-(alk-1-enyl)-2-acyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:17810 biolink:NamedThing 1-O-(alk-1-enyl)-2-O-acyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:17832 biolink:NamedThing 1-O-(alk-1-enyl)-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:52567 biolink:NamedThing 1-(alk-1-enyl)-2-acyl-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:73423 biolink:NamedThing 1-(alk-1-enyl)-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:136688 biolink:NamedThing N-acetyl-alpha-D-glucosaminyl-L-tyrosine monarch-merged.owl owl:Class CHEBI:26830 biolink:NamedThing sulfonium compound monarch-merged.owl chebi_ontology owl:Class CHEBI:15414 biolink:NamedThing S-adenosyl-L-methionine A sulfonium compound that is the S-adenosyl derivative of L-methionine. It is an intermediate in the metabolic pathway of methionine. monarch-merged.owl SAM|Acylcarnitine|S-adenosylmethionine|S-Adenosyl-L-methionine|[(3S)-3-amino-3-carboxypropyl](5'-deoxyadenosin-5'-yl)(methyl)sulfonium|S-adenosyl-L-methionine|[1-(adenin-9-yl)-1,5-dideoxy-beta-D-ribofuranos-5-yl][(3S)-3-amino-3-carboxypropyl](methyl)sulfonium|(3S)-5'-[(3-amino-3-carboxypropyl)methylsulfonio]-5'-deoxyadenosine, inner salt|AdoMet|S-Adenosylmethionine|S-(5'-deoxyadenosin-5'-yl)-L-methionine|SAMe +1 C15H23N6O5S InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/p+1/t7-,8+,10+,11+,14+,27?/m0/s1 MEFKEPWMEQBLKI-AIRLBKTGSA-O 399.44500 399.14452 C[S+](CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12 KNApSAcK:C00007347|HMDB:HMDB0001185|CAS:29908-03-0|MetaCyc:S-ADENOSYLMETHIONINE|DrugBank:DB00118|KEGG:C00019|PMID:11017945|COMe:MOL000172|PMID:17439666|Beilstein:3576439|Wikipedia:S-Adenosyl_methionine|Reaxys:3919754 CHEBI:10786|CHEBI:12760|CHEBI:12742|CHEBI:527887|CHEBI:22036|CHEBI:12757|CHEBI:8946|CHEBI:45607|CHEBI:10833 chebi_ontology owl:Class CHEBI:156255 biolink:NamedThing S-adenosyl-D-methionine monarch-merged.owl +1 C15H23N6O5S InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/p+1/t7-,8-,10-,11-,14-,27?/m1/s1 MEFKEPWMEQBLKI-XCPQSEKJSA-O 399.450 399.14452 [S+](C[C@H]1O[C@@H](N2C3=NC=NC(N)=C3N=C2)[C@H](O)[C@@H]1O)(CC[C@@H](N)C(O)=O)C chebi_ontology owl:Class CHEBI:17434 biolink:NamedThing trimethylsulfonium monarch-merged.owl owl:Class CHEBI:17728 biolink:NamedThing S-methyl-L-methionine monarch-merged.owl owl:Class CHEBI:30488 biolink:NamedThing sulfonium monarch-merged.owl sulphonium|trihydridosulfur(1+)|H3S(+)|sulfonium|sulfanium|[SH3](+)|H3S+ +1 H3S InChI=1S/H2S/h1H2/p+1 RWSOTUBLDIXVET-UHFFFAOYSA-O 35.08982 34.99500 [H][S+]([H])[H] CAS:18155-21-0|Gmelin:307 chebi_ontology owl:Class CHEBI:4623 biolink:NamedThing (carboxymethyl)(dimethyl)sulfonium monarch-merged.owl owl:Class CHEBI:58252 biolink:NamedThing S-methyl-L-methionine zwitterion monarch-merged.owl owl:Class CHEBI:140326 biolink:NamedThing tertiary carboxamide monarch-merged.owl owl:Class CHEBI:23990 biolink:NamedThing ethyl ester monarch-merged.owl owl:Class CHEBI:16879 biolink:NamedThing diethyl 2-methyl-3-oxosuccinate monarch-merged.owl owl:Class CHEBI:23711 biolink:NamedThing diethyl 2-methyl-3-hydroxysuccinate monarch-merged.owl owl:Class CHEBI:27750 biolink:NamedThing ethyl acetate monarch-merged.owl owl:Class CHEBI:52342 biolink:NamedThing ethyl formate monarch-merged.owl owl:Class CHEBI:68508 biolink:NamedThing diethyl maleate monarch-merged.owl owl:Class CHEBI:38777 biolink:NamedThing azetidines monarch-merged.owl owl:Class CHEBI:25572 biolink:NamedThing nocardicin monarch-merged.owl owl:Class CHEBI:30968 biolink:NamedThing azetidine monarch-merged.owl owl:Class CHEBI:46959 biolink:NamedThing N-acylazetidine monarch-merged.owl owl:Class CHEBI:136708 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-6-O-phosphonato-alpha-D-mannosyl-L-serine(2-) residue monarch-merged.owl owl:Class CHEBI:35416 biolink:NamedThing alpha-amino-acid residue anion monarch-merged.owl owl:Class CHEBI:136710 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->4)-6-O-phosphonato-alpha-D-mannosyl-L-threonine(2-) residue monarch-merged.owl owl:Class CHEBI:136714 biolink:NamedThing C-terminal-gamma-(L-glutamyl)-L-glutamyl(3-) group monarch-merged.owl owl:Class CHEBI:136717 biolink:NamedThing C-terminal-gamma-(5-phospho-L-glutamyl )-L-glutamyl(4-) group monarch-merged.owl owl:Class CHEBI:136761 biolink:NamedThing C-terminal-gamma-(L-glutamyl 5-semialdehyde)-L-glutamyl(2-) group monarch-merged.owl owl:Class CHEBI:136763 biolink:NamedThing C-terminal-gamma-(L-ornithyl)-L-glutamyl(1-) group monarch-merged.owl owl:Class CHEBI:138385 biolink:NamedThing N(omega)-(2'-phospho-ADP-D-ribosyl)-L-arginine(3-) residue monarch-merged.owl owl:Class CHEBI:138442 biolink:NamedThing O(3)-(beta-D-GlcA-(1->3)-beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-serine(2-) residue monarch-merged.owl owl:Class CHEBI:138443 biolink:NamedThing O(3)-(beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-serine(2-) residue monarch-merged.owl owl:Class CHEBI:138444 biolink:NamedThing O(3)-(beta-D-GlcA-(1->3)-poly[beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)]-beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-serine polyanionic residue monarch-merged.owl owl:Class CHEBI:138445 biolink:NamedThing O(3)-(poly[beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)]-beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-serine polyanionic residue monarch-merged.owl owl:Class CHEBI:139126 biolink:NamedThing C-terminal S-carbamoyl-L-cysteinate residue monarch-merged.owl owl:Class CHEBI:139127 biolink:NamedThing C-terminal S-cyano-L-cysteinate residue monarch-merged.owl owl:Class CHEBI:139321 biolink:NamedThing S-(sulfosulfanyl)-L-cysteine(1-) residue monarch-merged.owl owl:Class CHEBI:139597 biolink:NamedThing O(3)-[N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-serine(1-) residue monarch-merged.owl owl:Class CHEBI:139598 biolink:NamedThing O(3)-[N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-threonine(1-) residue monarch-merged.owl owl:Class CHEBI:140664 biolink:NamedThing S-(2-sulfodisulfanyl)-L-cysteine(1-) residue monarch-merged.owl owl:Class CHEBI:143819 biolink:NamedThing C-terminal amino acid residue(1-) monarch-merged.owl owl:Class CHEBI:32461 biolink:NamedThing cysteinate residue monarch-merged.owl owl:Class CHEBI:32471 biolink:NamedThing aspartate residue monarch-merged.owl owl:Class CHEBI:32484 biolink:NamedThing glutamate residue monarch-merged.owl owl:Class CHEBI:33726 biolink:NamedThing proteinogenic amino-acid residue anion monarch-merged.owl owl:Class CHEBI:61941 biolink:NamedThing gamma-carboxy-L-glutamic acid(2-) residue monarch-merged.owl owl:Class CHEBI:61974 biolink:NamedThing 3-sulfino-L-alanine(1-) residue monarch-merged.owl owl:Class CHEBI:61977 biolink:NamedThing O-phosphonato-L-threonine(2-) residue monarch-merged.owl owl:Class CHEBI:61978 biolink:NamedThing O(4)-phosphonato-L-tyrosine(2-) residue monarch-merged.owl owl:Class CHEBI:65286 biolink:NamedThing L-tyrosine-O-sulfate(1-) residue monarch-merged.owl owl:Class CHEBI:73599 biolink:NamedThing 3-methylthioaspartate residue monarch-merged.owl owl:Class CHEBI:78499 biolink:NamedThing C-terminal-gamma-L-glutamyl-L-2-aminoadipate 6-phosphate(4-) group monarch-merged.owl owl:Class CHEBI:78501 biolink:NamedThing C-terminal-gamma-L-glutamyl-L-2-aminoadipate semialdehyde(2-) group monarch-merged.owl owl:Class CHEBI:78503 biolink:NamedThing C-terminal-gamma-L-glutamyl-L-2-aminoadipate(3-) group monarch-merged.owl owl:Class CHEBI:78526 biolink:NamedThing C-terminal-gamma-L-glutamyl-L-lysine(1-) group monarch-merged.owl owl:Class CHEBI:82620 biolink:NamedThing L-tyrosine-O-phosphate(2-) residue monarch-merged.owl owl:Class CHEBI:83120 biolink:NamedThing N(6)-[(R)-S(8)-succinyldihydrolipoyl]-L-lysine(1-) residue monarch-merged.owl owl:Class CHEBI:83226 biolink:NamedThing N(omega)-phospho-L-arginine(1-) residue monarch-merged.owl owl:Class CHEBI:83421 biolink:NamedThing O-phospho-L-serine(2-) residue monarch-merged.owl owl:Class CHEBI:83624 biolink:NamedThing O-adenyl-L-tyrosine(1-) residue monarch-merged.owl owl:Class CHEBI:84990 biolink:NamedThing gamma-carboxy-L-glutamate(2-) residue monarch-merged.owl owl:Class CHEBI:87169 biolink:NamedThing S-sulfo-L-cysteine(1-) residue monarch-merged.owl owl:Class CHEBI:90510 biolink:NamedThing S-[(2E,6E)-farnesyl]-L-cysteinate residue monarch-merged.owl owl:Class CHEBI:90516 biolink:NamedThing L-leucinate residue monarch-merged.owl owl:Class CHEBI:90602 biolink:NamedThing uridylyl-L-tyrosine(1-) residue monarch-merged.owl owl:Class CHEBI:90782 biolink:NamedThing C-terminal proteinogenic amino-acid residue(1-) monarch-merged.owl owl:Class CHEBI:84111 biolink:NamedThing L-isoleucine derivative monarch-merged.owl owl:Class CHEBI:136712 biolink:NamedThing pivaloyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136760 biolink:NamedThing short-chain (3S)-hydroxy fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138609 biolink:NamedThing short-chain (R)-3-hydroxy fatty acyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138628 biolink:NamedThing 2-hydroxybutanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138634 biolink:NamedThing 3-methylnonanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138637 biolink:NamedThing 3-methyldodecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57375 biolink:NamedThing lauroyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57386 biolink:NamedThing octanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:61430 biolink:NamedThing decanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62620 biolink:NamedThing hexanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:64868 biolink:NamedThing hexacosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:65052 biolink:NamedThing tetracosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74141 biolink:NamedThing montanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76291 biolink:NamedThing nonanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76386 biolink:NamedThing triacontanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77547 biolink:NamedThing undecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:78811 biolink:NamedThing heptanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84183 biolink:NamedThing 3-methylundecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84847 biolink:NamedThing 2,6-dimethylheptanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:90118 biolink:NamedThing tricosanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:21650 biolink:NamedThing N-acyl-L-glutamic acid monarch-merged.owl owl:Class CHEBI:48309 biolink:NamedThing N-formyl-L-glutamic acid monarch-merged.owl owl:Class CHEBI:77065 biolink:NamedThing beta-citrylglutamic acid monarch-merged.owl owl:Class CHEBI:136730 biolink:NamedThing (S)-all-trans-4-hydroxyretinoic acid monarch-merged.owl owl:Class CHEBI:136731 biolink:NamedThing 5-hydroxymethyldeoxycytidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:85454 biolink:NamedThing 5-methyl dCMP(1-) residue monarch-merged.owl owl:Class CHEBI:26901 biolink:NamedThing benzyltetrahydroisoquinoline monarch-merged.owl owl:Class CHEBI:15944 biolink:NamedThing 6-O-methylnorlaudanosoline monarch-merged.owl owl:Class CHEBI:15979 biolink:NamedThing 1-benzyl-2-methyl-1,2,3,4-tetrahydroisoquinoline monarch-merged.owl owl:Class CHEBI:16777 biolink:NamedThing berbamunine monarch-merged.owl owl:Class CHEBI:16804 biolink:NamedThing (RS)-1-benzyl-1,2,3,4-tetrahydroisoquinoline monarch-merged.owl owl:Class CHEBI:38818 biolink:NamedThing N-methylcoclaurine monarch-merged.owl owl:Class CHEBI:46774 biolink:NamedThing polyether monarch-merged.owl owl:Class CHEBI:46786 biolink:NamedThing diether monarch-merged.owl owl:Class CHEBI:136746 biolink:NamedThing 5-phospho-D-xylonic acid monarch-merged.owl owl:Class CHEBI:22300 biolink:NamedThing aldonic acid phosphate An aldonic acid in which at least one of the hydroxy groups has been phosphorylated. monarch-merged.owl aldonic acid phosphates chebi_ontology owl:Class CHEBI:24346 biolink:NamedThing phosphoglyceric acid monarch-merged.owl owl:Class CHEBI:35184 biolink:NamedThing gluconic acid phosphate monarch-merged.owl gluconic acid phosphates CHEBI:33850|CHEBI:24264 chebi_ontology owl:Class CHEBI:37392 biolink:NamedThing ribonic acid phosphate monarch-merged.owl owl:Class CHEBI:49062 biolink:NamedThing tetronic acid phosphate monarch-merged.owl owl:Class CHEBI:33845 biolink:NamedThing xylonic acid derivative monarch-merged.owl owl:Class CHEBI:136750 biolink:NamedThing D-xylono-1,4-lactone-5-phosphate monarch-merged.owl owl:Class CHEBI:37429 biolink:NamedThing aldonolactone phosphate monarch-merged.owl owl:Class CHEBI:136752 biolink:NamedThing L-arabino-1,4-lactone-5-phosphate monarch-merged.owl owl:Class CHEBI:16938 biolink:NamedThing 6-O-phosphono-D-glucono-1,5-lactone monarch-merged.owl owl:Class CHEBI:61701 biolink:NamedThing L-ascorbic acid 6-phosphate monarch-merged.owl owl:Class CHEBI:37581 biolink:NamedThing gamma-lactone A lactone having a five-membered lactone ring. monarch-merged.owl 1,4-Lactone|1,4-lactones|butyrolactones|gamma-lactonas|gamma-Laktone|gamma-lactona|gamma-lactones|a 1,4-lactone 0 C4H3O2R3 83.066 83.01330 O1C(C(C(C1=O)*)*)* PMID:18789684 CHEBI:13194|CHEBI:18937|CHEBI:541|CHEBI:22971 chebi_ontology owl:Class CHEBI:17803 biolink:NamedThing dehydro-D-arabinono-1,4-lactone monarch-merged.owl owl:Class CHEBI:67190 biolink:NamedThing carlactone monarch-merged.owl owl:Class CHEBI:136754 biolink:NamedThing 5-phospho-L-arabinonic acid monarch-merged.owl owl:Class CHEBI:22529 biolink:NamedThing amino sugar phosphate monarch-merged.owl owl:Class CHEBI:35131 biolink:NamedThing aldose phosphate monarch-merged.owl aldose phosphates chebi_ontology owl:Class CHEBI:35132 biolink:NamedThing ketose phosphate monarch-merged.owl owl:Class CHEBI:35139 biolink:NamedThing uronic acid phosphate monarch-merged.owl owl:Class CHEBI:47878 biolink:NamedThing hexose phosphate A phospho sugar that is formally obtained from a hexose. monarch-merged.owl hexose phosphate chebi_ontology owl:Class CHEBI:81474 biolink:NamedThing N-Acetyl-alpha-D-hexosamine 1-phosphate monarch-merged.owl owl:Class CHEBI:84055 biolink:NamedThing pentose phosphate Any phospho sugar that is the phosphate derivative of pentose. monarch-merged.owl pentose phosphates chebi_ontology owl:Class CHEBI:33843 biolink:NamedThing arabinonic acid derivative monarch-merged.owl owl:Class CHEBI:17077 biolink:NamedThing 2-carboxy-D-arabinitol monarch-merged.owl owl:Class CHEBI:57318 biolink:NamedThing (S)-3-hydroxyacyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:137480 biolink:NamedThing 4-saturated-(3S)-hydroxyacyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62616 biolink:NamedThing (S)-3-hydroxydecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62617 biolink:NamedThing (S)-3-hydroxyoctanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76356 biolink:NamedThing (3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76366 biolink:NamedThing (3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:57319 biolink:NamedThing (R)-3-hydroxyacyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74280 biolink:NamedThing (R)-3-hydroxyhexanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76417 biolink:NamedThing (3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76420 biolink:NamedThing (3R,11Z,14Z,17Z,20Z)-3-hydroxyhexacosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76462 biolink:NamedThing (3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76466 biolink:NamedThing (3R,11Z,14Z,17Z,20Z,23Z)-3-hydroxyhexacosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76527 biolink:NamedThing 2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86040 biolink:NamedThing 3-hydroxyoctanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:86041 biolink:NamedThing 3-hydroxydecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:62619 biolink:NamedThing 3-oxooctanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71410 biolink:NamedThing 7-methyl-3-oxooct-6-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71481 biolink:NamedThing (8Z,11Z,14Z)-3-oxoicosa-8,11,14-trienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:71491 biolink:NamedThing (8Z,11Z,14Z,17Z)-3-oxoicosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73857 biolink:NamedThing (9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:73871 biolink:NamedThing (9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74011 biolink:NamedThing (11Z)-3-oxoicosa-11-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74012 biolink:NamedThing (11Z,14Z)-3-oxoicosa-11,14-dienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74305 biolink:NamedThing (8Z,11Z,14Z,17Z,20Z,23Z)-3-oxohexacosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74311 biolink:NamedThing (10Z,13Z,16Z,19Z,22Z,25Z)-3-oxooctacosahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74313 biolink:NamedThing (12Z,15Z,18Z,21Z,24Z,27Z)-3-oxotriacontahexaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74427 biolink:NamedThing (12Z,15Z,18Z,21Z)-3-oxotetracosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:74663 biolink:NamedThing (11Z,14Z,17Z,20Z,23Z)-3-oxohexacosapentaenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:76419 biolink:NamedThing (11Z,14Z,17Z,20Z)-3-oxohexacosatetraenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:136769 biolink:NamedThing alpha-D-galactopyranosyl-(1->2)-alpha-D-glucopyranosyl-(1->3)-1,2-diacyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:63779 biolink:NamedThing alpha-D-Gal-(1->2)-alpha-D-Glc-(1->3')-1,2-diacylglycerol monarch-merged.owl owl:Class CHEBI:139371 biolink:NamedThing aryl sulfate oxoanion monarch-merged.owl owl:Class CHEBI:157685 biolink:NamedThing primary alkyl sulfate ester(1-) monarch-merged.owl owl:Class CHEBI:167097 biolink:NamedThing trihexosylceramide sulfate monarch-merged.owl owl:Class CHEBI:23872 biolink:NamedThing dodecyl sulfate monarch-merged.owl owl:Class CHEBI:57531 biolink:NamedThing L-serine O-sulfate(1-) monarch-merged.owl owl:Class CHEBI:57904 biolink:NamedThing D-glucose 6-sulfate(1-) monarch-merged.owl owl:Class CHEBI:58028 biolink:NamedThing 6-O-sulfonato-alpha-D-Glc-(1->6)-alpha-D-Glc-(1->6)-alpha-D-Glc-(1->3)-1-O-alkyl-2-O-acylglycerol monarch-merged.owl owl:Class CHEBI:58102 biolink:NamedThing 2-N,6-O-disulfonato-D-glucosamine(2-) monarch-merged.owl owl:Class CHEBI:58261 biolink:NamedThing methyl sulfate(1-) monarch-merged.owl owl:Class CHEBI:60091 biolink:NamedThing alpha,alpha-trehalose-2-sulfate(1-) monarch-merged.owl owl:Class CHEBI:60092 biolink:NamedThing SL659 monarch-merged.owl owl:Class CHEBI:63270 biolink:NamedThing N-acetyl-beta-D-galactosamine 6-sulfate(1-) monarch-merged.owl owl:Class CHEBI:75956 biolink:NamedThing galactosylceramide sulfate(1-) monarch-merged.owl owl:Class CHEBI:78429 biolink:NamedThing 1-alkyl-2-acyl-3-(3-O-sulfo-beta-D-galactosyl)-sn-glycerol(1-) monarch-merged.owl owl:Class CHEBI:78430 biolink:NamedThing 1,2-diacyl-3-(3-O-sulfo-beta-D-galactosyl)glycerol(1-) monarch-merged.owl owl:Class CHEBI:82953 biolink:NamedThing 1-(3-O-sulfonato-beta-D-galactosyl)ceramide(1-) monarch-merged.owl owl:Class CHEBI:83414 biolink:NamedThing alkyl sulfate(1-) monarch-merged.owl owl:Class CHEBI:84732 biolink:NamedThing sulfohexosyl ceramide(1-) monarch-merged.owl owl:Class CHEBI:84733 biolink:NamedThing dihexosylceramide sulfate(1-) monarch-merged.owl owl:Class CHEBI:87808 biolink:NamedThing 2-ethylhexyl sulfate(1-) monarch-merged.owl owl:Class CHEBI:90164 biolink:NamedThing N-acetyl-beta-D-galactosaminyl-(1->4)-beta-D-3-sulfogalactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(1-) monarch-merged.owl owl:Class CHEBI:136822 biolink:NamedThing cyclobis-(1->6)-alpha-nigerosyl monarch-merged.owl owl:Class CHEBI:50126 biolink:NamedThing tetrasaccharide monarch-merged.owl owl:Class CHEBI:147369 biolink:NamedThing glucotetraose monarch-merged.owl owl:Class CHEBI:149433 biolink:NamedThing mannotetraose monarch-merged.owl owl:Class CHEBI:17164 biolink:NamedThing stachyose monarch-merged.owl owl:Class CHEBI:27603 biolink:NamedThing 1(F)-alpha-D-galactosylraffinose monarch-merged.owl owl:Class CHEBI:64835 biolink:NamedThing 1,6-kestotetraose monarch-merged.owl owl:Class CHEBI:64836 biolink:NamedThing 6,6-kestotetraose monarch-merged.owl owl:Class CHEBI:51026 biolink:NamedThing macrocycle A cyclic compound containing nine or more atoms as part of the cyclic system. monarch-merged.owl macrocycles|Makrocyclen|Makrozyklen|macrocycle|makrozyklische Verbindungen|makrocyclische Verbindungen Wikipedia:Macrocycle chebi_ontology owl:Class CHEBI:23456 biolink:NamedThing cyclodextrin monarch-merged.owl owl:Class CHEBI:29701 biolink:NamedThing tyrocidine A monarch-merged.owl owl:Class CHEBI:51197 biolink:NamedThing calixaromatic monarch-merged.owl owl:Class CHEBI:63944 biolink:NamedThing macrocyclic lactone Any lactone in which the cyclic carboxylic ester group forms a part of a cyclic macromolecule. monarch-merged.owl macrocyclic lactones CHEBI:50333 chebi_ontology owl:Class CHEBI:71948 biolink:NamedThing tyrocidine B monarch-merged.owl owl:Class CHEBI:71949 biolink:NamedThing tyrocidine C monarch-merged.owl owl:Class CHEBI:71950 biolink:NamedThing tyrocidine D monarch-merged.owl owl:Class CHEBI:82798 biolink:NamedThing cembrene C monarch-merged.owl owl:Class CHEBI:82800 biolink:NamedThing (R)-cembrene A monarch-merged.owl owl:Class CHEBI:136823 biolink:NamedThing alpha-D-Glcp-(1->6)-alpha-D-Glcp-(1->3)-alpha-D-Glcp-(1->6)-D-Glcp monarch-merged.owl owl:Class CHEBI:61986 biolink:NamedThing maltotetraose tetrasaccharide monarch-merged.owl owl:Class CHEBI:62974 biolink:NamedThing cellotetraose monarch-merged.owl owl:Class CHEBI:22743 biolink:NamedThing benzyl alcohols monarch-merged.owl owl:Class CHEBI:17814 biolink:NamedThing salicin monarch-merged.owl owl:Class CHEBI:17987 biolink:NamedThing benzyl alcohol monarch-merged.owl owl:Class CHEBI:25281 biolink:NamedThing methylbenzyl alcohol monarch-merged.owl owl:Class CHEBI:27628 biolink:NamedThing 4-isopropylbenzyl alcohol monarch-merged.owl owl:Class CHEBI:136825 biolink:NamedThing (E)-1-(glycyl-L-cystein-S-yl)-omega-(methylthio)alkylhydroximate zwitterion monarch-merged.owl owl:Class CHEBI:136830 biolink:NamedThing S-[(Z)-N-hydroxy-2-phenylethanimidoyl]-L-cysteinylglycine zwitterion monarch-merged.owl owl:Class CHEBI:136831 biolink:NamedThing S-[(E)-N-hydroxy-2-(indol-3-yl)ethanimidoyl]-L-cysteinylglycine zwitterion monarch-merged.owl owl:Class CHEBI:136832 biolink:NamedThing Cys(IAN)-Gly zwitterion monarch-merged.owl owl:Class CHEBI:137991 biolink:NamedThing beta-Asp-Arg zwitterion monarch-merged.owl owl:Class CHEBI:356445 biolink:NamedThing glycylglycine zwitterion monarch-merged.owl owl:Class CHEBI:57822 biolink:NamedThing D-alanyl-D-alanine zwitterion monarch-merged.owl owl:Class CHEBI:60390 biolink:NamedThing D-alanyl-D-serine zwitterion monarch-merged.owl owl:Class CHEBI:61694 biolink:NamedThing L-cysteinylglycine zwitterion monarch-merged.owl owl:Class CHEBI:61696 biolink:NamedThing L-prolinylglycine zwitterion monarch-merged.owl owl:Class CHEBI:73779 biolink:NamedThing Gly-Pro zwitterion monarch-merged.owl owl:Class CHEBI:73786 biolink:NamedThing Ala-Gly zwitterion monarch-merged.owl owl:Class CHEBI:74387 biolink:NamedThing Ala-Gln zwitterion monarch-merged.owl owl:Class CHEBI:74388 biolink:NamedThing Ala-His zwitterion monarch-merged.owl owl:Class CHEBI:74389 biolink:NamedThing Ala-Leu zwitterion monarch-merged.owl owl:Class CHEBI:74390 biolink:NamedThing Ala-Thr zwitterion monarch-merged.owl owl:Class CHEBI:74391 biolink:NamedThing Gly-Asn zwitterion monarch-merged.owl owl:Class CHEBI:74392 biolink:NamedThing Gly-Gln zwitterion monarch-merged.owl owl:Class CHEBI:74393 biolink:NamedThing Gly-Met zwitterion monarch-merged.owl owl:Class CHEBI:74394 biolink:NamedThing Met-Ala zwitterion monarch-merged.owl owl:Class CHEBI:77460 biolink:NamedThing L-aminoacyl-L-amino acid zwitterion monarch-merged.owl owl:Class CHEBI:84311 biolink:NamedThing bacilysin zwitterion monarch-merged.owl owl:Class CHEBI:51334 biolink:NamedThing SO-thioperoxol monarch-merged.owl owl:Class CHEBI:22326 biolink:NamedThing S-alkylsulfenic acid monarch-merged.owl owl:Class CHEBI:84076 biolink:NamedThing L-histidine derivative monarch-merged.owl owl:Class CHEBI:79070 biolink:NamedThing hercynylselenocysteine monarch-merged.owl owl:Class CHEBI:136849 biolink:NamedThing 3-oxo-Delta(4)-steroid group An organic group derived from any 3-oxo-Delta(4)-steroid. monarch-merged.owl a 3-oxo-Delta4-steroid group 0 C6H6O 94.111 94.04186 C1=C(C*)*C(CC1=O)* chebi_ontology owl:Class CHEBI:33247 biolink:NamedThing organic group Any substituent group or skeleton containing carbon. monarch-merged.owl organic groups chebi_ontology owl:Class CHEBI:136853 biolink:NamedThing 3-(acyloxy)acyl group monarch-merged.owl owl:Class CHEBI:142514 biolink:NamedThing ->8)-alpha-Neu5Ac-(2->3)-[beta-D-Gal-(1->3)-beta-D-GalNAc-(1->4)]-beta-D-Gal-(1->4)-yl group monarch-merged.owl owl:Class CHEBI:142521 biolink:NamedThing beta-D-GalpNAc-(1->4)-[alpha-Neup5Gc-(2->3)]-beta-D-Galp-(1->4)-R group monarch-merged.owl owl:Class CHEBI:142522 biolink:NamedThing beta-GalNAc-(1->4)-[alpha-Neu5Ac-(2->8)-alpha-Neu5Ac-(2->3)]-beta-Gal-(1->4)-R group monarch-merged.owl owl:Class CHEBI:142533 biolink:NamedThing ->4)-alpha-D-Galp-(1->4)-beta-D-Galp-(1->4)-beta-D-Glcp-yl group An organic group forming part of, and a proposed epitope within, globoside GM1. monarch-merged.owl ->4)-alpha-D-galactopyranosyl-(1->4)-beta-D-galactopyranosylp-(1->4)-beta-D-glucopyranosyl|->4)-alpha-D-Gal-(1->4)-beta-D-Gal-(1->4)-beta-D-Glc-yl|->4)-alpha-D-galactosyl-(1->4)-beta-D-galactosylp-(1->4)-beta-D-glucosyl|->4)-alpha-D-Gal-(1->4)-beta-D-Gal-(1->4)-beta-D-Glc-yl group 0 C18H30O15 486.423 486.15847 *[C@@H]1O[C@@H]([C@@H](O[C@@H]2O[C@@H]([C@H](O[C@@H]3[C@@H]([C@@H](O)[C@H]([C@@H](CO)O3)O*)O)[C@@H]([C@H]2O)O)CO)[C@@H]([C@H]1O)O)CO PMID:7691279 chebi_ontology owl:Class CHEBI:22221 biolink:NamedThing acyl group An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids. monarch-merged.owl acyl groups|groupe acyle|acyl group|alkanoyl|alkanoyl group chebi_ontology owl:Class CHEBI:24403 biolink:NamedThing glycosyl group An organic group obtained by removing the hydroxy group from the hemiacetal function of a monosaccharide or monosaccharide derivative and, by extension, of a lower oligosaccharide or oligosaccharide derivative. monarch-merged.owl glycosyl group|glycosyl groups|groupe glycosyle chebi_ontology owl:Class CHEBI:33474 biolink:NamedThing hydrocarbylidyne group Trivalent groups, RC#, formed by removing three hydrogen atoms from the same carbon atom of a hydrocarbon, the free valencies of which are engaged in a triple bond. monarch-merged.owl hydrocarbylidyne groups|RC#|groupe hydrocarbylidyne|hydrocarbylidyne group chebi_ontology owl:Class CHEBI:33708 biolink:NamedThing amino-acid residue When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue. monarch-merged.owl amino-acid residues|protein residue|amino acid residue|amino-acid residue chebi_ontology owl:Class CHEBI:50319 biolink:NamedThing nucleotide residue monarch-merged.owl nucleotide residues chebi_ontology owl:Class CHEBI:51446 biolink:NamedThing organic divalent group monarch-merged.owl chebi_ontology owl:Class CHEBI:51447 biolink:NamedThing organic univalent group monarch-merged.owl chebi_ontology owl:Class CHEBI:52845 biolink:NamedThing cyclic organic group An organic group that consists of a closed ring. It may be a substituent or a skeleton. monarch-merged.owl cyclic organic groups chebi_ontology owl:Class PR:000025513 biolink:NamedThing modified amino-acid residue An organic group that results from covalent modification or chemical alteration to the side chain or backbone atoms of an amino acid residue or derivative thereof, where such alteration maintains the integrity of the amino acid chain containing the residue. monarch-merged.owl modified protein residue|modified amino acid chain residue owl:Class PR:000036199 biolink:NamedThing non-peptidyl modified amino-acid residue An organic group that results from covalent modification or chemical alteration to the backbone atoms of amino acid residues so that their peptide bond is altered but the C1 and alpha-N bond is uncleaved. monarch-merged.owl owl:Class CHEBI:136851 biolink:NamedThing colupulone monarch-merged.owl owl:Class CHEBI:136852 biolink:NamedThing adlupulone monarch-merged.owl owl:Class CHEBI:6574 biolink:NamedThing lupulone monarch-merged.owl owl:Class CHEBI:15622 biolink:NamedThing 2,3-diketogulonic acid monarch-merged.owl owl:Class CHEBI:33507 biolink:NamedThing diketoaldonic acid monarch-merged.owl owl:Class CHEBI:37426 biolink:NamedThing aldarolactone monarch-merged.owl owl:Class CHEBI:60940 biolink:NamedThing D-mannosyl-D-glyceric acid monarch-merged.owl owl:Class CHEBI:77021 biolink:NamedThing cellobionic acid monarch-merged.owl owl:Class CHEBI:84190 biolink:NamedThing D-galactaro-1,5-lactone monarch-merged.owl owl:Class CHEBI:84191 biolink:NamedThing D-glucaro-1,5-lactone monarch-merged.owl owl:Class CHEBI:84257 biolink:NamedThing 3,6-anhydro-L-galactonic acid monarch-merged.owl owl:Class CHEBI:136859 biolink:NamedThing pro-agent A compound that, on administration, undergoes conversion by biochemical (enzymatic), chemical (possibly following an enzymatic step), or physical (e.g. photochemical) activation processes before becoming the active agent for which it is a pro-agent. monarch-merged.owl proagents|pro-agents|proagent PMID:26449612 chebi_ontology owl:Class CHEBI:33232 biolink:NamedThing application Intended use of the molecular entity or part thereof by humans. monarch-merged.owl chebi_ontology owl:Class CHEBI:25944 biolink:NamedThing pesticide Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests. monarch-merged.owl Pestizide|pesticides|pesticide|Pestizid Wikipedia:Pesticide chebi_ontology owl:Class CHEBI:27780 biolink:NamedThing detergent A surfactant (or a mixture containing one or more surfactants) having cleaning properties in dilute solutions. monarch-merged.owl Detergents|detergent KEGG:C01689 CHEBI:4456|CHEBI:23648 chebi_ontology owl:Class CHEBI:33286 biolink:NamedThing agrochemical An agrochemical is a substance that is used in agriculture or horticulture. monarch-merged.owl agrichemical|agrichemicals|agricultural chemicals|agrochemicals Wikipedia:Agrochemical chebi_ontology owl:Class CHEBI:33292 biolink:NamedThing fuel An energy-rich substance that can be transformed with release of usable energy. monarch-merged.owl chebi_ontology owl:Class CHEBI:35204 biolink:NamedThing tracer monarch-merged.owl owl:Class CHEBI:35209 biolink:NamedThing label monarch-merged.owl owl:Class CHEBI:37958 biolink:NamedThing dye monarch-merged.owl owl:Class CHEBI:46787 biolink:NamedThing solvent A liquid that can dissolve other substances (solutes) without any change in their chemical composition. monarch-merged.owl solvents|Loesungsmittel|solvant Wikipedia:Solvent chebi_ontology owl:Class CHEBI:47867 biolink:NamedThing indicator Anything used in a scientific experiment to indicate the presence of a substance or quality, change in a body, etc. monarch-merged.owl Indikator chebi_ontology owl:Class CHEBI:50406 biolink:NamedThing probe A role played by a molecular entity used to study the microscopic environment. monarch-merged.owl owl:Class CHEBI:50533 biolink:NamedThing protein denaturant monarch-merged.owl owl:Class CHEBI:52217 biolink:NamedThing pharmaceutical Any substance introduced into a living organism with therapeutic or diagnostic purpose. monarch-merged.owl medicament|farmaco|pharmaceuticals CHEBI:33293|CHEBI:33294 chebi_ontology owl:Class CHEBI:64047 biolink:NamedThing food additive Any substance which is added to food to preserve or enhance its flavour and/or appearance. monarch-merged.owl food additives Wikipedia:Food_additive chebi_ontology owl:Class CHEBI:64345 biolink:NamedThing MALDI matrix material monarch-merged.owl owl:Class CHEBI:64857 biolink:NamedThing cosmetic The role played by a substance in enhancing the appearance or odour of the human body; a name given to the substance itself or to a component of it. monarch-merged.owl cosmetics|cosmetic component Wikipedia:Cosmetics chebi_ontology owl:Class CHEBI:65023 biolink:NamedThing anti-asthmatic agent Any compound that has anti-asthmatic effects. monarch-merged.owl antiasthmatic agents|anti-asthmatic agents|antiasthmatic agent chebi_ontology owl:Class CHEBI:75324 biolink:NamedThing excipient A generally pharmacologically inactive substance that is formulated with the active ingredient of a medication. monarch-merged.owl bulking agent|excipient|filler|fillers|bulking agents owl:Class CHEBI:75835 biolink:NamedThing anti-anaemic agent monarch-merged.owl owl:Class CHEBI:76414 biolink:NamedThing propellant A compressed gas or liquid with a boiling point lower than room temperature which to used to propel and dispense liquids such as deodorants, insecticides, paints, etc. from aerosol cans. monarch-merged.owl propellants PMID:24001847|PMID:22519407 chebi_ontology owl:Class CHEBI:77964 biolink:NamedThing anticaking agent monarch-merged.owl owl:Class CHEBI:77968 biolink:NamedThing humectant A compound that is used to keep a substance moist. monarch-merged.owl humectants Wikipedia:humectant chebi_ontology owl:Class CHEBI:78433 biolink:NamedThing refrigerant A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a "R" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure. monarch-merged.owl refrigerants Wikipedia:Refrigerant chebi_ontology owl:Class CHEBI:79056 biolink:NamedThing plasticiser monarch-merged.owl owl:Class CHEBI:79314 biolink:NamedThing flame retardant Any compound that is added to manufactured materials to inhibit, suppress, or delay the production of flames and so prevent the spread of fire. monarch-merged.owl flame retardants Wikipedia:Flame_retardant chebi_ontology owl:Class CHEBI:136860 biolink:NamedThing antidote to sarin poisoning monarch-merged.owl owl:Class CHEBI:50247 biolink:NamedThing antidote Any protective agent counteracting or neutralizing the action of poisons. monarch-merged.owl antidotes chebi_ontology owl:Class CHEBI:74529 biolink:NamedThing antidote to paracetamol poisoning A role borne by a molecule that acts to counteract or neutralize the deleterious effects of paracetamol (acetaminophen). monarch-merged.owl antidote to Tylenol poisoning|antidote to acetaminophen poisoning|antidotes to Tylenol poisoning|antidotes to paracetamol poisoning|Tylenol poisoning antidotes|antidotes to acetaminophen poisoning|paracetamol poisoning antidote|Tylenol poisoning antidote|acetaminophen poisoning antidote|paracetamol poisoning antidotes|acetaminophen poisoning antidotes PMID:16573399|PMID:22348679|PMID:7112203|PMID:22352734|PMID:16354242|PMID:16575097|PMID:22353666|PMID:22998987|PMID:22835053 chebi_ontology owl:Class CHEBI:74530 biolink:NamedThing antidote to curare poisoning monarch-merged.owl owl:Class CHEBI:90749 biolink:NamedThing antidote to cyanide poisoning monarch-merged.owl owl:Class CHEBI:136873 biolink:NamedThing oligoglycosyl-(1->4)-beta-D-glucose monarch-merged.owl owl:Class CHEBI:156536 biolink:NamedThing oligoglycosyl-(1->4)-D-glucose monarch-merged.owl owl:Class CHEBI:50699 biolink:NamedThing oligosaccharide A compound in which monosaccharide units are joined by glycosidic linkages. The term is commonly used to refer to a defined structure as opposed to a polymer of unspecified length or a homologous mixture. When the linkages are of other types the compounds are regarded as oligosaccharide analogues. monarch-merged.owl oligosacarido|Oligosaccharide|oligosaccharides|oligosacaridos|O-glycosylglycosides|O-glycosylglycoside KEGG:C00930 CHEBI:25679|CHEBI:35319|CHEBI:7758 chebi_ontology owl:Class CHEBI:23448 biolink:NamedThing cyclic oligosaccharide monarch-merged.owl owl:Class CHEBI:24151 biolink:NamedThing galactooligosaccharide monarch-merged.owl owl:Class CHEBI:24268 biolink:NamedThing glucooligosaccharide monarch-merged.owl owl:Class CHEBI:25174 biolink:NamedThing mannooligosaccharide monarch-merged.owl owl:Class CHEBI:3523 biolink:NamedThing cellodextrin monarch-merged.owl owl:Class CHEBI:35368 biolink:NamedThing hexasaccharide monarch-merged.owl owl:Class CHEBI:35369 biolink:NamedThing pentasaccharide monarch-merged.owl owl:Class CHEBI:36233 biolink:NamedThing disaccharide A compound in which two monosaccharides are joined by a glycosidic bond. monarch-merged.owl Disacharid|disaccharides|disacarido|Disaccharid|Disaccharide|disacaridos KEGG:C01911 CHEBI:23844|CHEBI:4654 chebi_ontology owl:Class CHEBI:53463 biolink:NamedThing heptasaccharide monarch-merged.owl owl:Class CHEBI:62055 biolink:NamedThing deoxy oligosaccharide monarch-merged.owl owl:Class CHEBI:62563 biolink:NamedThing cellooligosaccharide monarch-merged.owl owl:Class CHEBI:74961 biolink:NamedThing raffinose family oligosaccharide monarch-merged.owl owl:Class CHEBI:136875 biolink:NamedThing oligoglycosyl-(1->4)-beta-D-glucosyl-(1<->1)-ceramide monarch-merged.owl owl:Class CHEBI:36498 biolink:NamedThing galactosylceramide monarch-merged.owl owl:Class CHEBI:36500 biolink:NamedThing glucosylceramide Any of the cerebrosides in which the monosaccharide head group is glucose. monarch-merged.owl 0 C10H17NO8R2 279.24390 279.09542 OC[C@H]1OC(OC[C@H](NC([*])=O)[C@H](O)[*])[C@H](O)[C@@H](O)[C@@H]1O PMID:16758576 chebi_ontology owl:Class CHEBI:36054 biolink:NamedThing benzoate ester Esters of benzoic acid or substituted benzoic acids. monarch-merged.owl benzoate ester|benzoic acid esters|benzoate esters owl:Class CHEBI:15871 biolink:NamedThing o-orsellinate depside monarch-merged.owl owl:Class CHEBI:30814 biolink:NamedThing digallic acid monarch-merged.owl owl:Class CHEBI:31832 biolink:NamedThing methyl salicylate monarch-merged.owl owl:Class CHEBI:32898 biolink:NamedThing baccatin III monarch-merged.owl owl:Class CHEBI:41237 biolink:NamedThing benzyl benzoate monarch-merged.owl owl:Class CHEBI:72775 biolink:NamedThing methyl benzoate monarch-merged.owl owl:Class CHEBI:73244 biolink:NamedThing methyl anthranilate monarch-merged.owl owl:Class CHEBI:136877 biolink:NamedThing 5-hydroxyuridine 5'-phosphate(1-) residue monarch-merged.owl owl:Class CHEBI:138053 biolink:NamedThing 5-methoxycarbonylmethoxyuridine(1-) residue monarch-merged.owl owl:Class CHEBI:65315 biolink:NamedThing uridine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74269 biolink:NamedThing guanosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:74411 biolink:NamedThing adenosine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:82748 biolink:NamedThing cytidine 5'-monophosphate(1-) residue monarch-merged.owl owl:Class CHEBI:136878 biolink:NamedThing C2-C8-saturated long-chain fatty acyl pantetheine-4-phosphorylserine(1-) residue monarch-merged.owl owl:Class CHEBI:136907 biolink:NamedThing (7S)-7-hydroxy-C2-C8-saturated long-chain fatty acyl pantetheine-4-phosphorylserine(1-) residue monarch-merged.owl owl:Class CHEBI:136908 biolink:NamedThing (7R,8R)-7,8-dihydroxy-C2-C8-saturated long-chain fatty acyl pantetheine-4-phosphorylserine(1-) residue monarch-merged.owl owl:Class CHEBI:57292 biolink:NamedThing succinyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57341 biolink:NamedThing 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57343 biolink:NamedThing 3-hydroxypimeloyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57360 biolink:NamedThing pimeloyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57378 biolink:NamedThing glutaryl-CoA(5-) monarch-merged.owl owl:Class CHEBI:57388 biolink:NamedThing oxalyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:75635 biolink:NamedThing mesaconyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:75636 biolink:NamedThing 3-methylfumaryl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76315 biolink:NamedThing dodecanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76316 biolink:NamedThing decanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76317 biolink:NamedThing octanedioyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:76327 biolink:NamedThing adipoyl-CoA(5-) monarch-merged.owl owl:Class CHEBI:136891 biolink:NamedThing 2'-unsubstituted isoflavones monarch-merged.owl owl:Class CHEBI:18220 biolink:NamedThing isoflavone monarch-merged.owl owl:Class CHEBI:136897 biolink:NamedThing O-[S-(3S)-hydroxy-3-methylglutarylpantetheine-4'-phosphoryl]-L-serine(2-) residue monarch-merged.owl owl:Class CHEBI:138113 biolink:NamedThing O-adenyl-L-threonine(1-) residue monarch-merged.owl owl:Class CHEBI:138114 biolink:NamedThing O-guanylyl-L-tyrosine(1-) residue monarch-merged.owl owl:Class CHEBI:138294 biolink:NamedThing N(epsilon)-(5'-guanylyl)-L-lysine(1-) residue monarch-merged.owl owl:Class CHEBI:140168 biolink:NamedThing N(4)-{alpha-Neu5Ac-(2->6)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn(2-) residue monarch-merged.owl owl:Class CHEBI:140169 biolink:NamedThing N(4)-{beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn(1-) residue monarch-merged.owl owl:Class CHEBI:140369 biolink:NamedThing N(4)-[6-(N-acetyl-alpha-D-glucosaminyl-1-phospho)-alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-glycan]-L-asparagine residue(1-) monarch-merged.owl owl:Class CHEBI:17427 biolink:NamedThing 3-hydroxy-L-aspartate residue monarch-merged.owl owl:Class CHEBI:64837 biolink:NamedThing N(pros)-phosphonato-L-histidine residue monarch-merged.owl owl:Class CHEBI:78846 biolink:NamedThing O-(S-pimeloylpantetheine-4'-phosphoryl)serine(2-) residue monarch-merged.owl owl:Class CHEBI:83586 biolink:NamedThing N(tele)-phosphonato-L-histidine residue monarch-merged.owl owl:Class CHEBI:87828 biolink:NamedThing N(6)-glutaryl-L-lysine(1-) residue monarch-merged.owl owl:Class CHEBI:87830 biolink:NamedThing N(6)-succinyl-L-lysine(1-) residue monarch-merged.owl owl:Class CHEBI:87831 biolink:NamedThing N(6)-malonyl-L-lysine(1-) residue monarch-merged.owl owl:Class CHEBI:88115 biolink:NamedThing N(2)-L-glutamino(1-) group monarch-merged.owl owl:Class CHEBI:90596 biolink:NamedThing L-beta-isoaspartate residue monarch-merged.owl owl:Class CHEBI:136912 biolink:NamedThing 1,2-diacyl-sn-glycero-3-phospholipid monarch-merged.owl owl:Class CHEBI:37739 biolink:NamedThing glycerophospholipid Any glycerolipid having a phosphate group ester-linked to a terminal carbon of the glycerol backbone. monarch-merged.owl phosphoglycerides|phosphoglyceride|glycerophospholipids|phosphatide|phosphatides PMID:17393491 CHEBI:24362|CHEBI:5456 chebi_ontology owl:Class CHEBI:136913 biolink:NamedThing monoacyl-sn-glycero-3-phospholipid monarch-merged.owl owl:Class CHEBI:138092 biolink:NamedThing 1-[(Z)-alk-1-enyl]-sn-glycero-3-phospho-(N-acyl)ethanolamine monarch-merged.owl owl:Class CHEBI:140593 biolink:NamedThing N-acyl-1-[(1Z)-alkenyl]-2-acyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:166988 biolink:NamedThing glycerophosphoglycerophosphoglycerol monarch-merged.owl owl:Class CHEBI:16961 biolink:NamedThing monoacylglycerol phosphate monarch-merged.owl owl:Class CHEBI:24360 biolink:NamedThing glycerophosphoglycerols monarch-merged.owl owl:Class CHEBI:35766 biolink:NamedThing glycerophosphoserine monarch-merged.owl owl:Class CHEBI:35774 biolink:NamedThing CDP-glycerols monarch-merged.owl owl:Class CHEBI:36313 biolink:NamedThing glycerophosphocholine The glycerol phosphate ester of a phosphocholine. A nutrient with many different roles in human health. monarch-merged.owl glycerophosphocholines PMID:8467564 CHEBI:26698|CHEBI:35763 chebi_ontology owl:Class CHEBI:36314 biolink:NamedThing glycerophosphoethanolamine monarch-merged.owl owl:Class CHEBI:36315 biolink:NamedThing glycerophosphoinositol Any glycerophospholipid having the polar alcohol inositol esterified to the phosphate group at the sn-3 position of the glycerol backbone. monarch-merged.owl GPI|glycerophosphoinositols PMID:14706866 CHEBI:35770|CHEBI:26040 chebi_ontology owl:Class CHEBI:36571 biolink:NamedThing prenylglycerol phosphate monarch-merged.owl owl:Class CHEBI:73131 biolink:NamedThing 2,3-bis-O-phytanyl-sn-glycerol 1-phosphate monarch-merged.owl owl:Class CHEBI:85429 biolink:NamedThing phosphatidylethanol monarch-merged.owl owl:Class CHEBI:85656 biolink:NamedThing N-acyllysophosphatidylethanolamine monarch-merged.owl owl:Class CHEBI:85658 biolink:NamedThing N-acyl-sn-glycero-3-phosphoethanolamine monarch-merged.owl owl:Class CHEBI:167056 biolink:NamedThing polyprenol diphosphate(3-) monarch-merged.owl owl:Class CHEBI:58179 biolink:NamedThing all-trans-hexaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:60721 biolink:NamedThing all-trans-decaprenyl diphosphate(3-) monarch-merged.owl owl:Class CHEBI:136966 biolink:NamedThing 3beta-hydroxysteroid-4alpha-carboxylate monarch-merged.owl owl:Class CHEBI:145943 biolink:NamedThing 4alpha-carboxy-5alpha-cholest-7-en-3beta-ol(1-) monarch-merged.owl owl:Class CHEBI:58177 biolink:NamedThing testolate monarch-merged.owl owl:Class CHEBI:58387 biolink:NamedThing 3beta-hydroxy-4beta-methyl-5alpha-cholest-7-ene-4alpha-carboxylate monarch-merged.owl owl:Class CHEBI:58874 biolink:NamedThing taurohyocholate monarch-merged.owl owl:Class CHEBI:62461 biolink:NamedThing helvolate monarch-merged.owl owl:Class CHEBI:63823 biolink:NamedThing 3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestan-26-oate monarch-merged.owl owl:Class CHEBI:64925 biolink:NamedThing 4beta-methylzymosterol-4alpha-carboxylate monarch-merged.owl owl:Class CHEBI:64967 biolink:NamedThing 4-carboxyzymosterol(1-) monarch-merged.owl owl:Class CHEBI:71321 biolink:NamedThing fusidate monarch-merged.owl owl:Class CHEBI:71542 biolink:NamedThing (25S)-Delta(7)-dafachronate monarch-merged.owl owl:Class CHEBI:71567 biolink:NamedThing (25S)-cholestenoate monarch-merged.owl owl:Class CHEBI:78358 biolink:NamedThing Delta(4)-dafachronate monarch-merged.owl owl:Class CHEBI:78602 biolink:NamedThing isoursodeoxycholate monarch-merged.owl owl:Class CHEBI:78603 biolink:NamedThing 3beta-hydroxy-7-oxo-5beta-cholan-24-oate monarch-merged.owl owl:Class CHEBI:83777 biolink:NamedThing 3-oxo-23,24-bisnorchol-4-en-22-oate monarch-merged.owl owl:Class CHEBI:84146 biolink:NamedThing 3beta-hydroxycholest-5-en-26-oate monarch-merged.owl owl:Class CHEBI:85550 biolink:NamedThing 9alpha-hydroxy-3-oxo-23,24-bisnorchol-4-en-22-oate monarch-merged.owl owl:Class CHEBI:85551 biolink:NamedThing 3-oxo-23,24-bisnorchola-1,4-dien-22-oate(1-) monarch-merged.owl owl:Class CHEBI:85553 biolink:NamedThing 9alpha-hydroxy-3-oxo-23,24-bisnorchola-1,4-dien-22-oate(1-) monarch-merged.owl owl:Class CHEBI:86116 biolink:NamedThing (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) monarch-merged.owl owl:Class CHEBI:87047 biolink:NamedThing 3beta-hydroxy-4beta-methyl-5alpha-cholest-8-ene-4alpha-carboxylate monarch-merged.owl owl:Class CHEBI:87055 biolink:NamedThing 3beta-hydroxy-5alpha-cholest-8-ene-4alpha-carboxylate monarch-merged.owl owl:Class CHEBI:87678 biolink:NamedThing (25R)-3beta-hydroxycholest-5-en-7-one-26-oate monarch-merged.owl owl:Class CHEBI:87748 biolink:NamedThing 3-oxochola-4,6-dien-24-oate monarch-merged.owl owl:Class CHEBI:136984 biolink:NamedThing EC 4.4.1.14 (1-aminocyclopropane-1-carboxylate synthase) inhibitor monarch-merged.owl owl:Class CHEBI:76831 biolink:NamedThing EC 4.4.1.* (C-S lyase) inhibitor monarch-merged.owl owl:Class CHEBI:136986 biolink:NamedThing 2-hydroxyhexacosanoyl-CoA monarch-merged.owl owl:Class CHEBI:28276 biolink:NamedThing (S)-3-hydroxyhexanoyl-CoA monarch-merged.owl owl:Class CHEBI:28573 biolink:NamedThing (R)-3-hydroxyoctanoyl-CoA monarch-merged.owl owl:Class CHEBI:74140 biolink:NamedThing 2-hydroxytetracosanoyl-CoA monarch-merged.owl owl:Class CHEBI:85212 biolink:NamedThing omega-hydroxy fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:61910 biolink:NamedThing very long-chain fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:143017 biolink:NamedThing ultra-long-chain fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:52329 biolink:NamedThing 3-oxotetracosanoyl-CoA monarch-merged.owl owl:Class CHEBI:52966 biolink:NamedThing hexacosanoyl-CoA monarch-merged.owl owl:Class CHEBI:52974 biolink:NamedThing tetracosanoyl-CoA monarch-merged.owl owl:Class CHEBI:52977 biolink:NamedThing 3-oxohexacosanoyl-CoA monarch-merged.owl owl:Class CHEBI:65088 biolink:NamedThing docosanoyl-CoA monarch-merged.owl owl:Class CHEBI:90266 biolink:NamedThing tricosanoyl-CoA monarch-merged.owl owl:Class CHEBI:83982 biolink:NamedThing L-glutamic acid derivative A proteinogenic amino acid derivative resulting from reaction of L-glutamic acid at the amino group or either of the carboxy groups, or from the replacement of any hydrogen of L-glutamic acid by a heteroatom. monarch-merged.owl L-glutamic acid derivatives chebi_ontology owl:Class CHEBI:16878 biolink:NamedThing N-acetyl-L-gamma-glutamyl phosphate monarch-merged.owl owl:Class CHEBI:26920 biolink:NamedThing tetrahydropteroyltri-L-glutamate monarch-merged.owl owl:Class CHEBI:37445 biolink:NamedThing folic acids A group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid units. monarch-merged.owl folates|folate CHEBI:24076|CHEBI:24074 chebi_ontology owl:Class CHEBI:136992 biolink:NamedThing N-(20-hydroxyarachidonoyl)ethanolamine monarch-merged.owl owl:Class CHEBI:2700 biolink:NamedThing anandamide monarch-merged.owl owl:Class CHEBI:64032 biolink:NamedThing linoleoyl ethanolamide monarch-merged.owl owl:Class CHEBI:71464 biolink:NamedThing palmitoyl ethanolamide monarch-merged.owl owl:Class CHEBI:71466 biolink:NamedThing oleoyl ethanolamide monarch-merged.owl owl:Class CHEBI:71467 biolink:NamedThing (5Z,8Z,11Z,14Z,17Z)-icosapentaenoylethanolamine monarch-merged.owl owl:Class CHEBI:85252 biolink:NamedThing N-(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoylethanolamine monarch-merged.owl owl:Class CHEBI:85253 biolink:NamedThing N-(icosanoyl)ethanolamine monarch-merged.owl owl:Class CHEBI:85262 biolink:NamedThing N-(tetradecanoyl)ethanolamine monarch-merged.owl owl:Class CHEBI:85263 biolink:NamedThing N-(dodecanoyl)ethanolamine monarch-merged.owl owl:Class CHEBI:85299 biolink:NamedThing N-(octadecanoyl)ethanolamine monarch-merged.owl owl:Class CHEBI:52392 biolink:NamedThing 2-arachidonoylglycerol monarch-merged.owl owl:Class CHEBI:75913 biolink:NamedThing 2-arachidonyl glyceryl ether monarch-merged.owl owl:Class CHEBI:24646 biolink:NamedThing hydroquinones monarch-merged.owl owl:Class CHEBI:13769 biolink:NamedThing aminohydroquinone monarch-merged.owl owl:Class CHEBI:17594 biolink:NamedThing hydroquinone monarch-merged.owl owl:Class CHEBI:17976 biolink:NamedThing ubiquinol monarch-merged.owl owl:Class CHEBI:23147 biolink:NamedThing chlorohydroquinones monarch-merged.owl owl:Class CHEBI:44747 biolink:NamedThing homogentisic acid monarch-merged.owl owl:Class CHEBI:52021 biolink:NamedThing 6-decylubiquinol monarch-merged.owl owl:Class CHEBI:61472 biolink:NamedThing all-trans-6-methoxy-2-hexaprenylhydroquinone monarch-merged.owl owl:Class CHEBI:75406 biolink:NamedThing 2-methyl-6-phytylhydroquinone monarch-merged.owl owl:Class CHEBI:75407 biolink:NamedThing 2,3-dimethyl-6-phytylhydroquinone monarch-merged.owl owl:Class CHEBI:84431 biolink:NamedThing 3-demethylubiquinol-7 monarch-merged.owl owl:Class CHEBI:84529 biolink:NamedThing 2-methoxy-6-all-trans-nonaprenylhydroquinone monarch-merged.owl owl:Class CHEBI:84530 biolink:NamedThing 6-methoxy-3-methyl-2-all-trans-heptaprenylhydroquinone monarch-merged.owl owl:Class CHEBI:84531 biolink:NamedThing 2-methoxy-3-methyl-6-all-trans-nonaprenylhydroquinone monarch-merged.owl owl:Class CHEBI:16664 biolink:NamedThing albendazole monarch-merged.owl owl:Class CHEBI:64203 biolink:NamedThing methiothepin A dibenzothiepine that is 10,11-dihydrodibenzo[b,f]thiepine bearing additional methylthio and 4-methylpiperazin-1-yl substituents at positions 8 and 10 respectively. Potent 5-HT2 antagonist, also active as 5-HT1 antagonist. Differentiates 5-HT1D sub-types. Also displays affinity for rodent 5-HT5B, 5-HT5A, 5-HT7 and 5-HT6 receptors (pK1 values are 6.6, 7.0, 8.4 and 8.7 respectively). monarch-merged.owl metitepinum|metitepina|1-methyl-4-[8-(methylsulfanyl)-10,11-dihydrodibenzo[b,f]thiepin-10-yl]piperazine|1-(10,11-Dihydro-8-(methylthio)dibenzo(b,f)thiepin-10-yl)-4-methylpiperazine|metitepine|(+-)-10-(4-Methylpiperazinyl)-8-(methylthio)-10,11-dihydrodibenzo(b,f)thiepin|(+-)-8-Methylthio-10-(4-methylpiperazino)-10,11-dihydrodibenzo(b,f)thiepin|Methiothepine|1-methyl-4-[8-(methylthio)-10,11-dihydrodibenzo[b,f]thiepin-10-yl]piperazine|(+-)-1-(10,11-Dihydro-8-(methylthio)dibenzo(b,f)thiepin-10-yl)-4-methylpiperazine 0 C20H24N2S2 InChI=1S/C20H24N2S2/c1-21-9-11-22(12-10-21)18-13-15-5-3-4-6-19(15)24-20-8-7-16(23-2)14-17(18)20/h3-8,14,18H,9-13H2,1-2H3 RLJFTICUTYVZDG-UHFFFAOYSA-N 356.54800 356.13809 CSc1ccc2Sc3ccccc3CC(N3CCN(C)CC3)c2c1 PMID:21964383|Patent:US6331536|PMID:20171242|Wikipedia:Metitepine|PMID:20331882|Patent:NL6608618|Patent:US3379729|PMID:21403818|CAS:20229-30-5|PMID:19837141|PMID:21514998|Patent:US4444778|PMID:21062995|PMID:18996971|Reaxys:626221|PMID:19995401|PMID:20547148|PMID:20233210|LINCS:LSM-4320 chebi_ontology owl:Class CHEBI:77092 biolink:NamedThing fenbendazole monarch-merged.owl owl:Class CHEBI:17376 biolink:NamedThing cystine A sulfur-containing amino acid obtained by the oxidation of two cysteine molecules which are then linked via a disulfide bond. monarch-merged.owl cistina|3,3'-dithiobis(2-aminopropanoic acid)|alpha-Diamino-beta-dithiolactic acid|cystine|Cystin|Zystin|3,3'-disulfanediylbis(2-aminopropanoic acid)|Dicysteine|Cystine 0 C6H12N2O4S2 InChI=1S/C6H12N2O4S2/c7-3(5(9)10)1-13-14-2-4(8)6(11)12/h3-4H,1-2,7-8H2,(H,9,10)(H,11,12) LEVWYRKDKASIDU-UHFFFAOYSA-N 240.30256 240.02385 NC(CSSCC(N)C(O)=O)C(O)=O KEGG:C01420|Gmelin:83347|CAS:923-32-0|PMID:24327171|Reaxys:1728091|PMID:18608550|Wikipedia:Cystine|Beilstein:1728091|PMID:24525029|PMID:24525030 CHEBI:14062|CHEBI:4052|CHEBI:23513 chebi_ontology owl:Class CHEBI:136998 biolink:NamedThing L-dihomomethionine monarch-merged.owl owl:Class CHEBI:136999 biolink:NamedThing L-trihomomethionine monarch-merged.owl owl:Class CHEBI:137002 biolink:NamedThing L-tetrahomomethionine monarch-merged.owl owl:Class CHEBI:137004 biolink:NamedThing L-pentahomomethionine monarch-merged.owl owl:Class CHEBI:137005 biolink:NamedThing L-hexahomomethionine monarch-merged.owl owl:Class CHEBI:137001 biolink:NamedThing C-terminal alpha-amino-acid amide residue monarch-merged.owl owl:Class CHEBI:22332 biolink:NamedThing alkylamino group monarch-merged.owl owl:Class CHEBI:21816 biolink:NamedThing N(2)-glutamino group monarch-merged.owl owl:Class CHEBI:24321 biolink:NamedThing glutamo group monarch-merged.owl owl:Class CHEBI:46738 biolink:NamedThing glycino group monarch-merged.owl owl:Class CHEBI:90511 biolink:NamedThing S-[(2E,6E)-farnesyl]-L-cysteine methyl ester residue monarch-merged.owl owl:Class CHEBI:90517 biolink:NamedThing methyl L-leucinato group monarch-merged.owl owl:Class CHEBI:90619 biolink:NamedThing C-terminal N-glycylaminoethanethioic S-acid residue monarch-merged.owl owl:Class CHEBI:16570 biolink:NamedThing N(6)-hydroxy-L-lysine monarch-merged.owl owl:Class CHEBI:47823 biolink:NamedThing N(omega)-hydroxyarginine monarch-merged.owl owl:Class CHEBI:50758 biolink:NamedThing N-hydroxydihomomethionine monarch-merged.owl owl:Class CHEBI:50761 biolink:NamedThing N-hydroxytrihomomethionine monarch-merged.owl owl:Class CHEBI:50762 biolink:NamedThing N-hydroxytetrahomomethionine monarch-merged.owl owl:Class CHEBI:50763 biolink:NamedThing N-hydroxypentahomomethionine monarch-merged.owl owl:Class CHEBI:50764 biolink:NamedThing N-hydroxyhexahomomethionine monarch-merged.owl owl:Class CHEBI:64796 biolink:NamedThing 2-deoxy-scyllo-inosose monarch-merged.owl owl:Class CHEBI:137017 biolink:NamedThing 1-(1Z-octadecenyl)-sn-glycero-3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:77283 biolink:NamedThing 1-(Z)-alk-1-enyl-sn-glycero-3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:137021 biolink:NamedThing 5(S),6(S)-epoxy-18(S)-hydroxy-(7E,9E,11Z,14Z,16E)-icosapentaenoic acid monarch-merged.owl owl:Class CHEBI:137022 biolink:NamedThing N-hydroxy-L-dihomomethionine monarch-merged.owl owl:Class CHEBI:137023 biolink:NamedThing N-hydroxy-L-trihomomethionine monarch-merged.owl owl:Class CHEBI:137024 biolink:NamedThing N-hydroxy-L-tetrahomomethionine monarch-merged.owl owl:Class CHEBI:137025 biolink:NamedThing N-hydroxy-L-pentahomomethionine monarch-merged.owl owl:Class CHEBI:137026 biolink:NamedThing N-hydroxy-L-hexahomomethionine monarch-merged.owl owl:Class CHEBI:137027 biolink:NamedThing N,N-dihydroxy-L-dihomomethionine monarch-merged.owl owl:Class CHEBI:137028 biolink:NamedThing N,N-dihydroxy-L-trihomomethionine monarch-merged.owl owl:Class CHEBI:137030 biolink:NamedThing N,N-dihydroxy-L-pentahomomethionine monarch-merged.owl owl:Class CHEBI:137033 biolink:NamedThing N,N-dihydroxy-L-hexahomomethionine monarch-merged.owl owl:Class CHEBI:15994 biolink:NamedThing 5alpha-androstane-3,17-dione monarch-merged.owl owl:Class CHEBI:16372 biolink:NamedThing 4,5alpha-dihydrocortisone monarch-merged.owl owl:Class CHEBI:17762 biolink:NamedThing 5alpha-cholestan-3-one monarch-merged.owl owl:Class CHEBI:18533 biolink:NamedThing 5alpha-campestan-3-one monarch-merged.owl owl:Class CHEBI:28952 biolink:NamedThing 5alpha-pregnane-3,20-dione monarch-merged.owl owl:Class CHEBI:36842 biolink:NamedThing 19-hydroxy steroid monarch-merged.owl owl:Class CHEBI:145952 biolink:NamedThing 4-formyl steroid monarch-merged.owl owl:Class CHEBI:17934 biolink:NamedThing pregnan-21-al monarch-merged.owl owl:Class CHEBI:86389 biolink:NamedThing 5beta-dihydroaldosterone monarch-merged.owl owl:Class CHEBI:36855 biolink:NamedThing 18-hydroxy steroid monarch-merged.owl owl:Class CHEBI:51323 biolink:NamedThing cinchona alkaloid An alkaloid based on a cinchonan skeleton. monarch-merged.owl cinchona alkaloids chebi_ontology owl:Class CHEBI:15854 biolink:NamedThing quinine A cinchona alkaloid that is cinchonidine in which the hydrogen at the 6-position of the quinoline ring is substituted by methoxy. monarch-merged.owl quinina|(9R)-6'-methoxy-8alpha-cinchonan-9-ol|chininum|6'-methoxycinchonidine|(-)-Quinine|Chinin|(8S,9R)-quinine|Quinine|(R)-(-)-quinine|(R)-(6-methoxyquinolin-4-yl)((2S,4S,8R)-8-vinylquinuclidin-2-yl)methanol|quinine|chinine|(-)-quinine 0 C20H24N2O2 InChI=1S/C20H24N2O2/c1-3-13-12-22-9-7-14(13)10-19(22)20(23)16-6-8-21-18-5-4-15(24-2)11-17(16)18/h3-6,8,11,13-14,19-20,23H,1,7,9-10,12H2,2H3/t13-,14-,19-,20+/m0/s1 LOUPRKONTZGTKE-WZBLMQSHSA-N 324.41680 324.18378 [H][C@]1(C[C@@H]2CC[N@]1C[C@@H]2C=C)[C@H](O)c1ccnc2ccc(OC)cc12 PMID:15857133|PMID:16524728|DrugBank:DB00468|PMID:12213073|Wikipedia:Quinine|PMID:11844668|PMID:17570664|Drug_Central:4523|PMID:18788725|PMID:16933872|KEGG:D08460|PMID:17482816|PMID:15027870|PMID:10937718|PMID:2579237|KNApSAcK:C00002193|PMID:12873511|PMID:10891117|PMID:12477351|KEGG:C06526|PMID:15026051|PMID:11212126|PMID:17850126|PMID:11728183|PMID:2657065|PMID:18348514|PMID:15225721|PMID:11855978|PMID:12502361|PMID:12127529|PMID:14761192|PMID:10821711|PMID:12798326|PMID:7009867|CAS:130-95-0|PMID:11549443|PMID:12217353|PMID:17506538|PMID:8182707|Beilstein:91867 CHEBI:8723|CHEBI:26499|CHEBI:355947|CHEBI:602929|CHEBI:569215|CHEBI:15001|CHEBI:127176 chebi_ontology owl:Class CHEBI:17685 biolink:NamedThing 3-hydroxyquinine monarch-merged.owl owl:Class CHEBI:48927 biolink:NamedThing N-acyl-L-alpha-amino acid Any L-alpha-amino acid carrying an N-acyl substituent. monarch-merged.owl N-Acyl-L-amino acid 0 C3H3NO3R2 101.061 101.01129 KEGG:C02850 CHEBI:7232|CHEBI:13240 chebi_ontology owl:Class CHEBI:16232 biolink:NamedThing N(6)-acyl-L-lysine monarch-merged.owl owl:Class CHEBI:21647 biolink:NamedThing N-acyl-L-aspartic acid monarch-merged.owl owl:Class CHEBI:16799 biolink:NamedThing 16alpha-hydroxy steroid monarch-merged.owl owl:Class CHEBI:15826 biolink:NamedThing 16alpha-hydroxyprogesterone monarch-merged.owl owl:Class CHEBI:35342 biolink:NamedThing 17alpha-hydroxy steroid The alpha-stereoisomer of 17-hydroxy steroid. monarch-merged.owl 17alpha-hydroxy steroids|17-alpha-Hydroxysteroid KEGG:C03336 CHEBI:13585|CHEBI:19174|CHEBI:782 chebi_ontology owl:Class CHEBI:138141 biolink:NamedThing 17alpha-hydroxy-C21-steroid Any C21-steroid carrying a hydroxy substituent at the 17alpha-position. Note that individual examples may have ring substituents at other positions and/or contain double bonds, aromatic A-rings, expanded/contracted rings etc., so the formula and mass may vary from that given for the generic structure. monarch-merged.owl a 17alpha-hydroxy-C21-steroid 0 C21H36O InChI=1S/C21H36O/c1-4-21(22)14-11-18-16-9-8-15-7-5-6-12-19(15,2)17(16)10-13-20(18,21)3/h15-18,22H,4-14H2,1-3H3/t15?,16?,17?,18?,19?,20?,21-/m1/s1 JSIVWCLRCGAVHN-ILZKQPLKSA-N 304.511 304.27662 C1CCCC2C1(C3C(CC2)C4C(CC3)([C@](CC4)(CC)O)C)C MetaCyc:17a-hydroxy-C21-steroids chebi_ontology owl:Class CHEBI:41879 biolink:NamedThing dexamethasone monarch-merged.owl owl:Class CHEBI:30154 biolink:NamedThing 5beta-pregnane-3,20-dione monarch-merged.owl owl:Class CHEBI:63837 biolink:NamedThing pregn-5-ene-3,20-dione monarch-merged.owl owl:Class CHEBI:85899 biolink:NamedThing 4-pregnen-3beta-ol-20-one monarch-merged.owl owl:Class CHEBI:86381 biolink:NamedThing 5beta-dihydrocorticosterone monarch-merged.owl owl:Class CHEBI:86384 biolink:NamedThing 5beta-dihydrodeoxycorticosterone monarch-merged.owl owl:Class CHEBI:15938 biolink:NamedThing pregnan-21-ol monarch-merged.owl owl:Class CHEBI:20656 biolink:NamedThing 5alpha-pregnane monarch-merged.owl owl:Class CHEBI:20674 biolink:NamedThing 5beta-pregnane monarch-merged.owl owl:Class CHEBI:64600 biolink:NamedThing C21-steroid hormone A steroid compound with a structure based on a 21-carbon (pregnane) skeleton that acts as a hormone. monarch-merged.owl C21-steroid hormones chebi_ontology owl:Class CHEBI:13705 biolink:NamedThing acetoacetate monarch-merged.owl owl:Class CHEBI:29743 biolink:NamedThing 3-oxododecanoate monarch-merged.owl owl:Class CHEBI:75923 biolink:NamedThing 3-oxodecanoate monarch-merged.owl owl:Class CHEBI:139514 biolink:NamedThing nonaflavuxanthin monarch-merged.owl owl:Class CHEBI:16605 biolink:NamedThing allyl alcohol monarch-merged.owl owl:Class CHEBI:36852 biolink:NamedThing 26-hydroxy steroid monarch-merged.owl owl:Class CHEBI:36864 biolink:NamedThing 25-hydroxy steroid monarch-merged.owl owl:Class CHEBI:36865 biolink:NamedThing 24-hydroxy steroid monarch-merged.owl owl:Class CHEBI:143563 biolink:NamedThing 3beta-hydroxy-4,4-dimethylsteroid monarch-merged.owl owl:Class CHEBI:145353 biolink:NamedThing 3beta-hydroxy-4alpha-formyl-4beta-methylsteroid monarch-merged.owl owl:Class CHEBI:146140 biolink:NamedThing 4alpha-hydroxymethyl-4beta-methyl-5alpha-cholest-7-en-3beta-ol monarch-merged.owl owl:Class CHEBI:15576 biolink:NamedThing (24R)-24-methylcycloart-25-en-3beta-ol monarch-merged.owl owl:Class CHEBI:15717 biolink:NamedThing 4beta-(hydroxymethyl)-4alpha-methyl-5alpha-cholest-7-en-3beta-ol monarch-merged.owl owl:Class CHEBI:16229 biolink:NamedThing 3beta-hydroxy-5beta-pregnan-20-one monarch-merged.owl owl:Class CHEBI:18134 biolink:NamedThing 3beta-hydroxy-4beta-methyl-5alpha-cholest-7-ene-4alpha-carboxylic acid monarch-merged.owl owl:Class CHEBI:18378 biolink:NamedThing 4alpha-methyl-5alpha-cholest-7-en-3beta-ol monarch-merged.owl owl:Class CHEBI:28082 biolink:NamedThing 5alpha-cholestane-3beta,5,6beta-triol monarch-merged.owl owl:Class CHEBI:29107 biolink:NamedThing 24-methylidenelophenol monarch-merged.owl owl:Class CHEBI:33203 biolink:NamedThing (Z)-24-ethylidenelophenol monarch-merged.owl owl:Class CHEBI:62457 biolink:NamedThing (17Z)-protosta-17(20),24-dien-3beta-ol monarch-merged.owl owl:Class CHEBI:75951 biolink:NamedThing protopanaxatriol monarch-merged.owl owl:Class CHEBI:76238 biolink:NamedThing protopanaxadiol monarch-merged.owl owl:Class CHEBI:60978 biolink:NamedThing ketogluconate monarch-merged.owl owl:Class CHEBI:24966 biolink:NamedThing keto-D-gluconate monarch-merged.owl owl:Class CHEBI:13711 biolink:NamedThing acetyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:14280 biolink:NamedThing formyl phosphate(1-) monarch-merged.owl owl:Class CHEBI:137116 biolink:NamedThing N-carbamoyl-L-methioninate monarch-merged.owl owl:Class CHEBI:32814 biolink:NamedThing N-carbamoyl-L-aspartate(2-) monarch-merged.owl owl:Class CHEBI:137117 biolink:NamedThing (S)-5-[2-(methylthio)ethyl]hydantoin monarch-merged.owl owl:Class CHEBI:86340 biolink:NamedThing L-5-monosubstituted hydantoin monarch-merged.owl owl:Class CHEBI:137150 biolink:NamedThing (R)-5-[2-(methylthio)ethyl]hydantoin monarch-merged.owl owl:Class CHEBI:86339 biolink:NamedThing D-5-monosubstituted hydantoin monarch-merged.owl owl:Class CHEBI:140750 biolink:NamedThing D-5-phenylhydantoin monarch-merged.owl owl:Class CHEBI:137152 biolink:NamedThing N-carbamoyl-D-methioninate monarch-merged.owl owl:Class CHEBI:85602 biolink:NamedThing N-carbamoyl-D-alpha-amino acid anion monarch-merged.owl owl:Class CHEBI:137154 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19R,20S)-19,20-epoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:137183 biolink:NamedThing (4Z,7Z,10Z,13Z,16Z,19S,20R)-19,20-epoxydocosapentaenoic acid monarch-merged.owl owl:Class CHEBI:137156 biolink:NamedThing phosphatidylserine(18:1/18:2) monarch-merged.owl owl:Class CHEBI:137165 biolink:NamedThing (S)-6-acetamido-3-aminohexanoic acid zwitterion monarch-merged.owl owl:Class CHEBI:137166 biolink:NamedThing 16(R)-HETE(1-) monarch-merged.owl owl:Class CHEBI:137167 biolink:NamedThing 16(S)-HETE(1-) monarch-merged.owl owl:Class CHEBI:137182 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAcl-(1->4)-[alpha-L-Fuc-(1->3)]-beta-D-GlcNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:137186 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-[beta-D-Xyl-(1->2)]-beta-D-Man-(1->4)-beta-D-GlcNAcl-(1->4)-beta-D-GlcNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:137207 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAcl-(1->4)-[alpha-L-Fuc-(1->6)]-beta-D-GlcNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:139493 biolink:NamedThing N(4)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc]-L-Asn residue monarch-merged.owl owl:Class CHEBI:139497 biolink:NamedThing N(4)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc)-L-Asn residue monarch-merged.owl owl:Class CHEBI:139498 biolink:NamedThing N(4)-(alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc)-L-Asn residue monarch-merged.owl owl:Class CHEBI:139499 biolink:NamedThing N(4)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc)-L-Asn residue monarch-merged.owl owl:Class CHEBI:139500 biolink:NamedThing N(4)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc)-L-Asn residue monarch-merged.owl owl:Class CHEBI:139504 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->4)]-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn residue monarch-merged.owl owl:Class CHEBI:139507 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn residue monarch-merged.owl owl:Class CHEBI:139510 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn residue monarch-merged.owl owl:Class CHEBI:139513 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-[beta-D-GlcNAc-(1->4)]-[beta-D-GlcNAc-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn residue monarch-merged.owl owl:Class CHEBI:140170 biolink:NamedThing N(4)-{beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->4)]-alpha-D-Man-(1->3)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->2)-[beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-L-Asn residue monarch-merged.owl owl:Class CHEBI:140357 biolink:NamedThing N(4)-[alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-glycan]-L-asparagine residue monarch-merged.owl owl:Class CHEBI:140371 biolink:NamedThing N(4)-[6-phospho-alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-glycan]-L-asparagine residue monarch-merged.owl owl:Class CHEBI:59080 biolink:NamedThing N-{alpha-Glc-(1->3)-alpha-Man-(1->2)-alpha-Man-(1->2)-alpha-Man-(1->3)-[alpha-Man-(1->2)-alpha-Man-(1->3)-[alpha-Man-(1->2)-alpha-Man-(1->6)]-alpha-Man-(1->6)]-beta-Man-(1->4)-beta-GlcNAc-(1->4)-beta-GlcNAc}-L-Asn residue monarch-merged.owl owl:Class CHEBI:59082 biolink:NamedThing N-{alpha-Glc-(1->3)-alpha-Glc-(1->3)-alpha-Man-(1->2)-alpha-Man-(1->2)-alpha-Man-(1->3)-[alpha-Man-(1->2)-alpha-Man-(1->3)-[alpha-Man-(1->2)-alpha-Man-(1->6)]-alpha-Man-(1->6)]-beta-Man-(1->4)-beta-GlcNAc-(1->4)-beta-GlcNAc}-L-Asn residue monarch-merged.owl owl:Class CHEBI:59087 biolink:NamedThing N-{alpha-Man-(1->3)-[alpha-Man-(1->3)-[alpha-Man-(1->6)]-alpha-Man-(1->6)]-beta-Man-(1->4)-beta-GlcNAc-(1->4)-beta-GlcNac}-L-Asn residue monarch-merged.owl owl:Class CHEBI:60615 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:60625 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:60627 biolink:NamedThing N(4)-{alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:60628 biolink:NamedThing N(4)-{alpha-D-Manp-(1->2)-alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)-[alpha-D-Manp-(1->3)-[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:60637 biolink:NamedThing N(4)-{alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-[alpha-D-Man-(1->3)-[alpha-D-Man-(1->2)-alpha-D-Man-(1->6)]-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-beta-D-GlcNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:60651 biolink:NamedThing N(4)-{beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->3)-[beta-D-GlcNAc-(1->2)-alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAcl-(1->4)-beta-D-GlcNAc}-Asn residue monarch-merged.owl owl:Class CHEBI:137185 biolink:NamedThing PA(18:0/18:3) monarch-merged.owl owl:Class CHEBI:78034 biolink:NamedThing 12(R)-HPETE methyl ester monarch-merged.owl owl:Class CHEBI:78035 biolink:NamedThing 12(S)-HPETE methyl ester monarch-merged.owl owl:Class CHEBI:83344 biolink:NamedThing 8-HPETE methyl ester monarch-merged.owl owl:Class CHEBI:1372 biolink:NamedThing 1-pyrroline-5-carboxylic acid monarch-merged.owl owl:Class CHEBI:27391 biolink:NamedThing 1-pyrroline-3-hydroxy-5-carboxylic acid monarch-merged.owl owl:Class CHEBI:36761 biolink:NamedThing 1-pyrroline-2-carboxylic acid monarch-merged.owl owl:Class CHEBI:137257 biolink:NamedThing omega-[(methylsulfanyl)alkyl]glucosinolic acid monarch-merged.owl owl:Class CHEBI:137260 biolink:NamedThing omega-[(methylsulfinyl)alkyl]glucosinolic acid monarch-merged.owl owl:Class CHEBI:22063 biolink:NamedThing sulfoxide monarch-merged.owl owl:Class CHEBI:16959 biolink:NamedThing albendazole S-oxide monarch-merged.owl owl:Class CHEBI:28262 biolink:NamedThing dimethyl sulfoxide monarch-merged.owl owl:Class CHEBI:35812 biolink:NamedThing oxfendazole monarch-merged.owl owl:Class CHEBI:62193 biolink:NamedThing biotin sulfoxide monarch-merged.owl owl:Class CHEBI:79327 biolink:NamedThing alkylglucosinolic acid monarch-merged.owl owl:Class CHEBI:25046 biolink:NamedThing linear tetrapyrrole monarch-merged.owl chebi_ontology owl:Class CHEBI:22866 biolink:NamedThing bilanes monarch-merged.owl owl:Class CHEBI:22869 biolink:NamedThing bilins monarch-merged.owl owl:Class CHEBI:36735 biolink:NamedThing biladienes Compounds based on a biladiene skeleton. monarch-merged.owl chebi_ontology owl:Class CHEBI:36736 biolink:NamedThing bilenes monarch-merged.owl owl:Class CHEBI:140156 biolink:NamedThing 8-formyl-8-demethylriboflavin 5'-phosphate monarch-merged.owl owl:Class CHEBI:22698 biolink:NamedThing benzaldehydes Any arenecarbaldehyde that consists of a formyl substituted benzene ring and its substituted derivatives thereof. monarch-merged.owl chebi_ontology owl:Class CHEBI:83385 biolink:NamedThing 2,5-diformylfuran monarch-merged.owl owl:Class CHEBI:83386 biolink:NamedThing 2-(dihydroxymethyl)-5-formylfuran monarch-merged.owl owl:Class CHEBI:84206 biolink:NamedThing 5-formyl-2-furoic acid monarch-merged.owl owl:Class CHEBI:84213 biolink:NamedThing 4-(phosphooxymethyl)-2-furancarboxaldehyde monarch-merged.owl owl:Class CHEBI:34154 biolink:NamedThing 13(S)-HODE monarch-merged.owl owl:Class CHEBI:72639 biolink:NamedThing 13-HODE monarch-merged.owl owl:Class CHEBI:65009 biolink:NamedThing indol-3-ylmethylamine monarch-merged.owl owl:Class CHEBI:137320 biolink:NamedThing (13S)-hydroxy-(14S,15S)-epoxy-(5Z,8Z,11Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:137342 biolink:NamedThing 13-hydroxy-14,15-epoxy-(5Z,8Z,11Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:33860 biolink:NamedThing aromatic amine An amino compound in which the amino group is linked directly to an aromatic system. monarch-merged.owl aryl amines|aromatic amines|arylamine|arylamines|aryl amine CHEBI:22646|CHEBI:2834|CHEBI:22622|CHEBI:13827|CHEBI:2863 chebi_ontology owl:Class CHEBI:36709 biolink:NamedThing aminoquinoline Any member of the class of quinolines in which the quinoline skeleton is substituted by one or more amino or substituted-amino groups. monarch-merged.owl aminoquinolines|aminoquinoline chebi_ontology owl:Class CHEBI:38034 biolink:NamedThing aminonaphthalene monarch-merged.owl owl:Class CHEBI:40036 biolink:NamedThing amitrole monarch-merged.owl owl:Class CHEBI:38925 biolink:NamedThing benzopteridine monarch-merged.owl benzopteridines owl:Class CHEBI:30527 biolink:NamedThing flavin A derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position. monarch-merged.owl Flavin|flavins owl:Class CHEBI:37324 biolink:NamedThing 7,8-dimethylbenzo[g]pteridine-2,4-dione monarch-merged.owl 7,8-dimethylbenzo[g]pteridine-2,4-dione owl:Class CHEBI:37326 biolink:NamedThing benzo[g]pteridine-2,4-dione monarch-merged.owl benzo[g]pteridine-2,4-dione owl:Class CHEBI:72346 biolink:NamedThing roseoflavin monarch-merged.owl owl:Class CHEBI:75232 biolink:NamedThing (8R)-hydroxy-(11R,12R)-epoxyicosa-(5Z,9E,14Z)-trienoate monarch-merged.owl owl:Class CHEBI:75233 biolink:NamedThing (8R)-hydroxy-(11S,12S)-epoxyicosa-(5Z,9E,14Z)-trienoate monarch-merged.owl owl:Class CHEBI:75234 biolink:NamedThing (10R)-hydroxy-(11S,12S)-epoxyicosa-(5Z,8Z,14Z)-trienoate monarch-merged.owl owl:Class CHEBI:75235 biolink:NamedThing (13R)-hydroxy-(14S,15S)-epoxyicosa-(5Z,8Z,11Z)-trienoate monarch-merged.owl owl:Class CHEBI:75327 biolink:NamedThing (8S,9S)-epoxy-(10R)-hydroxyicosa-(5Z,11Z,14Z)-trienoate monarch-merged.owl owl:Class CHEBI:137351 biolink:NamedThing 5-hydroxymethyldeoxycytidine 5'-monophosphate residue monarch-merged.owl owl:Class CHEBI:55367 biolink:NamedThing deoxyribonucleotide residue monarch-merged.owl owl:Class CHEBI:139231 biolink:NamedThing 5-methyldeoxycytidine 5'-monophosphate residue monarch-merged.owl owl:Class CHEBI:140286 biolink:NamedThing deoxyribonucleoside 5'-methylphosphate residue monarch-merged.owl owl:Class CHEBI:60801 biolink:NamedThing guanyl deoxyribonucleotide residue monarch-merged.owl owl:Class CHEBI:61265 biolink:NamedThing (beta-D-glucopyranosyloxymethyl)deoxyuridine 5'-monophosphate residue monarch-merged.owl owl:Class CHEBI:65305 biolink:NamedThing purine deoxyribonucleotide residue monarch-merged.owl owl:Class CHEBI:65306 biolink:NamedThing pyrimidine deoxyribonucleotide residue monarch-merged.owl owl:Class CHEBI:137376 biolink:NamedThing long-chain fatty acyl-AMP monarch-merged.owl owl:Class CHEBI:84312 biolink:NamedThing dodecanoyl-AMP monarch-merged.owl owl:Class CHEBI:137395 biolink:NamedThing pyridinium-3,5-biscarboxylic acid mononucleotide monarch-merged.owl owl:Class CHEBI:17188 biolink:NamedThing nucleoside 5'-monophosphate monarch-merged.owl Nucleoside phosphate|nucleoside monophosphates|nucleoside monophosphate|NMP|Nucleoside monophosphate 0 C5H10O7PR 213.103 213.01641 O[C@H]1[C@H]([*])O[C@H](COP(O)(O)=O)[C@H]1O KEGG:C01329|KEGG:C02520 CHEBI:7439|CHEBI:14676|CHEBI:25607|CHEBI:7654|CHEBI:7653 chebi_ontology owl:Class CHEBI:137398 biolink:NamedThing pyridinium-3,5-bisthiocarboxylic acid mononucleotide monarch-merged.owl owl:Class CHEBI:137399 biolink:NamedThing Ni(II)-pyridinium-3,5-bisthiocarboxylic acid mononucleotide monarch-merged.owl owl:Class CHEBI:139057 biolink:NamedThing pyridinium-3-carboxy-5-thiocarboxylic acid mononucleotide monarch-merged.owl owl:Class CHEBI:19257 biolink:NamedThing 2'-deoxyribonucleoside monophosphate monarch-merged.owl owl:Class CHEBI:26392 biolink:NamedThing purine nucleoside monophosphate monarch-merged.owl purine nucleoside monophosphates chebi_ontology owl:Class CHEBI:26438 biolink:NamedThing pyrimidine nucleoside monophosphate monarch-merged.owl owl:Class CHEBI:26558 biolink:NamedThing ribonucleoside monophosphate monarch-merged.owl ribonucleoside monophosphates chebi_ontology owl:Class CHEBI:36980 biolink:NamedThing pyridine nucleotide monarch-merged.owl pyridine nucleotides chebi_ontology owl:Class CHEBI:25527 biolink:NamedThing nicotinamide nucleotide monarch-merged.owl nicotinamide nucleotides chebi_ontology owl:Class CHEBI:25534 biolink:NamedThing nicotinic acid nucleotide monarch-merged.owl nicotinic acid nucleotides chebi_ontology owl:Class CHEBI:35737 biolink:NamedThing monothiocarboxylic acid Compounds in which one oxygen of a carboxy group has been replaced by divalent sulfur; RC(=O)SH or RC(=S)OH. monarch-merged.owl monothiocarboxylic acids|thio acid|monothiocarboxylic acid chebi_ontology owl:Class CHEBI:26952 biolink:NamedThing thioacetic acid monarch-merged.owl ethanethioic acid|Thioessigsaeure KEGG:C01857 chebi_ontology owl:Class CHEBI:35438 biolink:NamedThing nickel coordination entity monarch-merged.owl owl:Class CHEBI:137678 biolink:NamedThing nickel-sirohydrochlorin monarch-merged.owl owl:Class CHEBI:137696 biolink:NamedThing nickel-sirohydrochlorin a,c-diamide monarch-merged.owl owl:Class CHEBI:137699 biolink:NamedThing 15,17(3)-seco-F430-17(3)-acid monarch-merged.owl owl:Class CHEBI:22715 biolink:NamedThing benzimidazoles monarch-merged.owl owl:Class CHEBI:27822 biolink:NamedThing 2-aminobenzimidazole monarch-merged.owl owl:Class CHEBI:3392 biolink:NamedThing carbendazim monarch-merged.owl owl:Class CHEBI:36622 biolink:NamedThing benzimidazole monarch-merged.owl owl:Class CHEBI:45979 biolink:NamedThing thiabendazole monarch-merged.owl owl:Class CHEBI:87036 biolink:NamedThing benzimidazole fungicide monarch-merged.owl owl:Class CHEBI:87064 biolink:NamedThing benzimidazolylcarbamate fungicide monarch-merged.owl owl:Class CHEBI:137412 biolink:NamedThing cholesteryl (11Z,14Z,17Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:84346 biolink:NamedThing cholesteryl all-cis-icosa-8,11,14-trienoate monarch-merged.owl owl:Class CHEBI:88752 biolink:NamedThing cholesteryl (5Z,8Z,11Z)-icosatrienoate monarch-merged.owl owl:Class CHEBI:35972 biolink:NamedThing dihydroxy monocarboxylic acid Any hydroxy monocarboxylic acid carrying at least two hydroxy groups. monarch-merged.owl dihydroxy monocarboxylic acids chebi_ontology owl:Class CHEBI:14737 biolink:NamedThing pantoic acid monarch-merged.owl owl:Class CHEBI:15689 biolink:NamedThing 2,3-dihydroxy-3-methylbutanoic acid monarch-merged.owl owl:Class CHEBI:25351 biolink:NamedThing mevalonic acid monarch-merged.owl owl:Class CHEBI:27512 biolink:NamedThing (2R,3R)-2,3-dihydroxy-3-methylpentanoic acid monarch-merged.owl owl:Class CHEBI:61409 biolink:NamedThing dihydroxyphenylacetic acid A dihydroxy monocarboxylic acid consisting of phenylacetic acid having two phenolic hydroxy substituents. monarch-merged.owl dihydroxyphenylacetic acids CHEBI:23787 chebi_ontology owl:Class CHEBI:63900 biolink:NamedThing 3,16-dihydroxyhexadecanoic acid monarch-merged.owl owl:Class CHEBI:82987 biolink:NamedThing monacolin L acid monarch-merged.owl owl:Class CHEBI:137458 biolink:NamedThing (9S,10R)-9,10-epoxy-18-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:137459 biolink:NamedThing (9R,10S)-9,10-epoxy-18-hydroxyoctadecanoate monarch-merged.owl owl:Class CHEBI:137460 biolink:NamedThing (9R,10S)-9,10-epoxyoctadecanoate monarch-merged.owl owl:Class CHEBI:85195 biolink:NamedThing 9,10-epoxyoctadecanoate monarch-merged.owl owl:Class CHEBI:137461 biolink:NamedThing (9S,10R)-epoxyoctadecanoate monarch-merged.owl owl:Class CHEBI:137463 biolink:NamedThing 2,6-O-bis(alpha-D-mannopyranosyl)-1-phosphatidyl-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:59466 biolink:NamedThing phosphatidylinositol mannoside monarch-merged.owl owl:Class CHEBI:137483 biolink:NamedThing 2-O-(alpha-D-mannopyranosyl)-6-O-(6-acyl-alpha-D-mannopyranosyl)-1-phosphatidyl-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:59386 biolink:NamedThing 2-O-(alpha-D-mannopyranosyl)-1-phosphatidyl-1D-myo-inositol monarch-merged.owl owl:Class CHEBI:61006 biolink:NamedThing mannosyl diphosphorylinositol ceramide monarch-merged.owl owl:Class CHEBI:25248 biolink:NamedThing methyl ester Any carboxylic ester resulting from the formal condensation of a carboxy group with methanol. monarch-merged.owl carboxylic acid methyl ester|carboxylic acid methyl esters 0 C2H3O2R 59.044 59.01330 COC([*])=O chebi_ontology owl:Class CHEBI:17215 biolink:NamedThing methyl L-tyrosinate monarch-merged.owl owl:Class CHEBI:18230 biolink:NamedThing chlorophyll a monarch-merged.owl owl:Class CHEBI:30033 biolink:NamedThing bacteriochlorophyll a monarch-merged.owl owl:Class CHEBI:32197 biolink:NamedThing tetracenomycin A2 monarch-merged.owl owl:Class CHEBI:37941 biolink:NamedThing clopidogrel monarch-merged.owl owl:Class CHEBI:46574 biolink:NamedThing wybutosine monarch-merged.owl owl:Class CHEBI:64120 biolink:NamedThing M-factor monarch-merged.owl owl:Class CHEBI:71185 biolink:NamedThing methyl 3-cyano-2-phenylpropanoate monarch-merged.owl owl:Class CHEBI:73252 biolink:NamedThing gibberellin A4 methyl ester monarch-merged.owl owl:Class CHEBI:73256 biolink:NamedThing gibberellin A9 methyl ester monarch-merged.owl owl:Class CHEBI:73260 biolink:NamedThing gibberellin A34 methyl ester monarch-merged.owl owl:Class CHEBI:74300 biolink:NamedThing wybutosine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:74446 biolink:NamedThing 7-[(3S)-(3-amino-3-methoxycarbonyl)propyl]wyosine 5'-phosphate monarch-merged.owl owl:Class CHEBI:75650 biolink:NamedThing 5-(2-methoxy-2-oxoethyl)uridine 5'-monophosphate monarch-merged.owl owl:Class CHEBI:76032 biolink:NamedThing 7(1)-hydroxychlorophyll a monarch-merged.owl owl:Class CHEBI:76849 biolink:NamedThing 7-deoxyloganetin monarch-merged.owl owl:Class CHEBI:77699 biolink:NamedThing methyl formate monarch-merged.owl owl:Class CHEBI:77700 biolink:NamedThing methyl acetate monarch-merged.owl owl:Class CHEBI:84276 biolink:NamedThing methyl phenyl(piperidin-2-yl)acetate monarch-merged.owl owl:Class CHEBI:65323 biolink:NamedThing monoterpenoid indole alkaloid monarch-merged.owl owl:Class CHEBI:27288 biolink:NamedThing vinca alkaloid monarch-merged.owl owl:Class CHEBI:15341 biolink:NamedThing beta-D-glucosiduronic acid monarch-merged.owl owl:Class CHEBI:62439 biolink:NamedThing soyasapogenol B 3-O-beta-glucuronide monarch-merged.owl owl:Class CHEBI:62442 biolink:NamedThing soyasapogenol A 3-O-beta-glucuronide monarch-merged.owl owl:Class CHEBI:62445 biolink:NamedThing soyasapogenol E 3-O-beta-glucuronide monarch-merged.owl owl:Class CHEBI:84092 biolink:NamedThing 4-(beta-D-glucopyranuronosyloxy)retinoic acid monarch-merged.owl owl:Class CHEBI:137494 biolink:NamedThing 13(S)-HETE monarch-merged.owl owl:Class CHEBI:137495 biolink:NamedThing 13(R)-HODE monarch-merged.owl owl:Class CHEBI:137514 biolink:NamedThing TRPA1 channel agonist monarch-merged.owl owl:Class CHEBI:48705 biolink:NamedThing agonist Substance which binds to cell receptors normally responding to naturally occurring substances and which produces a response of its own. monarch-merged.owl agoniste|agonist|agonists|agonista chebi_ontology owl:Class CHEBI:140489 biolink:NamedThing tropomyosin-related kinase B receptor agonist monarch-merged.owl owl:Class CHEBI:140535 biolink:NamedThing TRPV1 agonist monarch-merged.owl owl:Class CHEBI:24621 biolink:NamedThing hormone Originally referring to an endogenous compound that is formed in specialized organ or group of cells and carried to another organ or group of cells, in the same organism, upon which it has a specific regulatory function, the term is now commonly used to include non-endogenous, semi-synthetic and fully synthetic analogues of such compounds. monarch-merged.owl endocrine|hormones chebi_ontology owl:Class CHEBI:50864 biolink:NamedThing insulin-sensitizing drug monarch-merged.owl owl:Class CHEBI:51060 biolink:NamedThing hormone agonist A chemical substance which binds to specific hormone receptors activating the function of the endocrine glands, the biosynthesis of their secreted hormones, or the action of hormones upon their specific sites. monarch-merged.owl chebi_ontology owl:Class CHEBI:60606 biolink:NamedThing opioid receptor agonist monarch-merged.owl owl:Class CHEBI:61966 biolink:NamedThing metabotropic glutamate receptor agonist monarch-merged.owl owl:Class CHEBI:62873 biolink:NamedThing odorant receptor agonist monarch-merged.owl owl:Class CHEBI:63114 biolink:NamedThing sphingosine-1-phosphate receptor agonist An agonist that binds to and activates sphingosine 1-phosphate receptors. monarch-merged.owl S1P receptor agonist|sphingosine 1-phosphate receptor agonist|SIP agonist|S1P receptor agonists|sphingosine-1-phosphate receptor agonists|EDG receptor agonist|SIP agonists|sphingosine 1-phosphate receptor agonists CHEBI:63172 chebi_ontology owl:Class CHEBI:63794 biolink:NamedThing retinoid X receptor agonist monarch-merged.owl owl:Class CHEBI:63951 biolink:NamedThing estrogen receptor agonist monarch-merged.owl owl:Class CHEBI:64106 biolink:NamedThing protein kinase agonist An agonist that selectively binds to and activates a protein kinase receptor. monarch-merged.owl protein kinase agonists chebi_ontology owl:Class CHEBI:64589 biolink:NamedThing glycine receptor agonist An agonist that binds to and activates glycine receptors monarch-merged.owl glycine receptor agonists chebi_ontology owl:Class CHEBI:65254 biolink:NamedThing LRH-1 agonist monarch-merged.owl owl:Class CHEBI:67072 biolink:NamedThing cannabinoid receptor agonist monarch-merged.owl owl:Class CHEBI:67198 biolink:NamedThing retinoic acid receptor agonist monarch-merged.owl owl:Class CHEBI:70782 biolink:NamedThing PPARalpha agonist monarch-merged.owl owl:Class CHEBI:70998 biolink:NamedThing G-protein-coupled receptor agonist monarch-merged.owl owl:Class CHEBI:71554 biolink:NamedThing PPARgamma agonist monarch-merged.owl owl:Class CHEBI:72768 biolink:NamedThing aryl hydrocarbon receptor agonist monarch-merged.owl owl:Class CHEBI:73191 biolink:NamedThing abscisic acid receptor agonist monarch-merged.owl owl:Class CHEBI:73311 biolink:NamedThing adenosine receptor agonist An agonist at any adenosine receptor. monarch-merged.owl adenosine receptor agonist chebi_ontology owl:Class CHEBI:73730 biolink:NamedThing PPARbeta/delta agonist monarch-merged.owl owl:Class CHEBI:75414 biolink:NamedThing platelet-activating factor receptor agonist monarch-merged.owl owl:Class CHEBI:77318 biolink:NamedThing pregnane X receptor agonist monarch-merged.owl owl:Class CHEBI:77326 biolink:NamedThing androstane receptor agonist monarch-merged.owl owl:Class CHEBI:78548 biolink:NamedThing adenylate cyclase agonist monarch-merged.owl owl:Class CHEBI:86029 biolink:NamedThing liver X receptor agonist monarch-merged.owl owl:Class CHEBI:91139 biolink:NamedThing elastin-laminin receptor agonist monarch-merged.owl owl:Class CHEBI:26658 biolink:NamedThing sesquiterpenoid monarch-merged.owl owl:Class CHEBI:137535 biolink:NamedThing (+)-corvol ether A monarch-merged.owl owl:Class CHEBI:137536 biolink:NamedThing (+)-corvol ether B monarch-merged.owl owl:Class CHEBI:36753 biolink:NamedThing eremophilane sesquiterpenoid monarch-merged.owl owl:Class CHEBI:36757 biolink:NamedThing farnesane sesquiterpenoid monarch-merged.owl owl:Class CHEBI:36758 biolink:NamedThing apo carotenoid sesquiterpenoid monarch-merged.owl owl:Class CHEBI:37667 biolink:NamedThing sesquiterpene lactone monarch-merged.owl owl:Class CHEBI:51478 biolink:NamedThing albaflavenol monarch-merged.owl owl:Class CHEBI:62090 biolink:NamedThing germacra-1(10),4,11(13)-trien-12-ol monarch-merged.owl owl:Class CHEBI:62091 biolink:NamedThing germacra-1(10),4,11(13)-trien-12-al monarch-merged.owl owl:Class CHEBI:63244 biolink:NamedThing pentalen-13-al monarch-merged.owl owl:Class CHEBI:68588 biolink:NamedThing germacrane sesquiterpenoid monarch-merged.owl owl:Class CHEBI:68658 biolink:NamedThing (+)-epi-alpha-bisabolol monarch-merged.owl owl:Class CHEBI:33599 biolink:NamedThing spiro compound A compound having one atom as the only common member of two rings. monarch-merged.owl spirocycle|spirocyclic compound|spiro compound|spirocycles|spirofused compounds|spiro-fused compounds|spirocyclic compounds|spiro compounds chebi_ontology owl:Class CHEBI:35624 biolink:NamedThing azaspiro compound monarch-merged.owl owl:Class CHEBI:35190 biolink:NamedThing diterpene A C20 terpene. monarch-merged.owl diterpenes|Diterpen|diterpeno|diterpenos chebi_ontology owl:Class CHEBI:138301 biolink:NamedThing labda-7,13(16),14-triene monarch-merged.owl owl:Class CHEBI:138302 biolink:NamedThing (12E)-labda-8(17),12,14-triene monarch-merged.owl owl:Class CHEBI:15415 biolink:NamedThing ent-kaurene monarch-merged.owl owl:Class CHEBI:17695 biolink:NamedThing casbene monarch-merged.owl owl:Class CHEBI:30037 biolink:NamedThing taxa-4,11-diene monarch-merged.owl owl:Class CHEBI:35673 biolink:NamedThing abietane monarch-merged.owl owl:Class CHEBI:36064 biolink:NamedThing taxane monarch-merged.owl owl:Class CHEBI:36505 biolink:NamedThing labdane monarch-merged.owl owl:Class CHEBI:36539 biolink:NamedThing kaurane monarch-merged.owl owl:Class CHEBI:36540 biolink:NamedThing ent-kaurane monarch-merged.owl owl:Class CHEBI:36547 biolink:NamedThing pimarane monarch-merged.owl owl:Class CHEBI:36765 biolink:NamedThing gibberellane monarch-merged.owl owl:Class CHEBI:36766 biolink:NamedThing ent-gibberellane monarch-merged.owl owl:Class CHEBI:36768 biolink:NamedThing casbane monarch-merged.owl owl:Class CHEBI:37526 biolink:NamedThing tigliane monarch-merged.owl (1aS,1bR,3S,4aS,6R,7aR,7bR,8R,9aR)-1,1,3,6,8-pentamethyltetradecahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulene|tigliane|Tiglian 0 C20H34 InChI=1S/C20H34/c1-11-6-14-7-12(2)9-16-18(15(14)8-11)13(3)10-17-19(16)20(17,4)5/h11-19H,6-10H2,1-5H3/t11-,12+,13-,14+,15-,16-,17-,18-,19+/m1/s1 CGVXVPQJMYMMIH-HKDZDBKOSA-N 274.485 274.26605 C1[C@@]2([C@@]([C@]3([C@@](C[C@H](C3)C)(C[C@@H]1C)[H])[H])([C@H](C)C[C@@]4([C@]2(C4(C)C)[H])[H])[H])[H] CAS:67707-87-3 chebi_ontology owl:Class CHEBI:48937 biolink:NamedThing phytane monarch-merged.owl 2,6,10,14-tetramethylhexadecane|Phytan 0 C20H42 InChI=1S/C20H42/c1-7-18(4)12-9-14-20(6)16-10-15-19(5)13-8-11-17(2)3/h17-20H,7-16H2,1-6H3 GGYKPYDKXLHNTI-UHFFFAOYSA-N 282.54748 282.32865 CCC(C)CCCC(C)CCCC(C)CCCC(C)C Beilstein:1744639|CAS:638-36-8 chebi_ontology owl:Class CHEBI:50060 biolink:NamedThing ent-cassa-12,15-diene monarch-merged.owl owl:Class CHEBI:50062 biolink:NamedThing pimaradiene monarch-merged.owl owl:Class CHEBI:50068 biolink:NamedThing stemod-13(17)-ene monarch-merged.owl owl:Class CHEBI:50069 biolink:NamedThing stemar-13-ene monarch-merged.owl owl:Class CHEBI:50072 biolink:NamedThing abietadiene monarch-merged.owl owl:Class CHEBI:50783 biolink:NamedThing ent-isokaurene monarch-merged.owl owl:Class CHEBI:52280 biolink:NamedThing isopimara-7,15-diene monarch-merged.owl owl:Class CHEBI:52463 biolink:NamedThing fusicocca-2,10(14)-diene monarch-merged.owl owl:Class CHEBI:59687 biolink:NamedThing halimane monarch-merged.owl owl:Class CHEBI:60689 biolink:NamedThing cembrane monarch-merged.owl owl:Class CHEBI:63707 biolink:NamedThing syn-labda-8(17),12E,14-triene monarch-merged.owl owl:Class CHEBI:63708 biolink:NamedThing isopimara-8(14),15-diene monarch-merged.owl owl:Class CHEBI:64282 biolink:NamedThing (Z)-biformene monarch-merged.owl owl:Class CHEBI:86062 biolink:NamedThing abietatriene monarch-merged.owl owl:Class CHEBI:15545 biolink:NamedThing prostaglandin A1 monarch-merged.owl owl:Class CHEBI:27820 biolink:NamedThing prostaglandin A2 monarch-merged.owl owl:Class CHEBI:85552 biolink:NamedThing 15-dehydroprostaglandin A1 monarch-merged.owl owl:Class CHEBI:137532 biolink:NamedThing 3-oxochenodeoxycholoyl-CoA monarch-merged.owl owl:Class CHEBI:137534 biolink:NamedThing 3-oxocholoyl-CoA monarch-merged.owl owl:Class CHEBI:137537 biolink:NamedThing 3-oxodeoxycholoyl-CoA monarch-merged.owl owl:Class CHEBI:137539 biolink:NamedThing 3-oxocholan-24-oyl-CoA monarch-merged.owl owl:Class CHEBI:138378 biolink:NamedThing beta-muricholoyl-CoA monarch-merged.owl owl:Class CHEBI:138379 biolink:NamedThing ursodeoxycholoyl-CoA monarch-merged.owl owl:Class CHEBI:15519 biolink:NamedThing choloyl-CoA monarch-merged.owl owl:Class CHEBI:28701 biolink:NamedThing chenodeoxycholoyl-CoA monarch-merged.owl owl:Class CHEBI:87769 biolink:NamedThing lithocholyl-CoA monarch-merged.owl owl:Class CHEBI:140564 biolink:NamedThing delta-cadinene monarch-merged.owl owl:Class CHEBI:15385 biolink:NamedThing (+)-delta-cadinene monarch-merged.owl owl:Class CHEBI:63703 biolink:NamedThing (-)-delta-cadinene monarch-merged.owl owl:Class CHEBI:138224 biolink:NamedThing (13R)-epi-8,13-epoxylabd-14-ene monarch-merged.owl owl:Class CHEBI:138234 biolink:NamedThing (13R)-manoyl oxide monarch-merged.owl owl:Class CHEBI:18293 biolink:NamedThing 5-methoxypsoralen monarch-merged.owl owl:Class CHEBI:23684 biolink:NamedThing dibenzothiophenes monarch-merged.owl owl:Class CHEBI:23825 biolink:NamedThing dibenzodioxine monarch-merged.owl owl:Class CHEBI:25970 biolink:NamedThing phenoxazine monarch-merged.owl owl:Class CHEBI:36416 biolink:NamedThing mancude organic heterotricyclic parent monarch-merged.owl mancude-ring organic heterotricyclic parents|mancude organic heterotricyclic parents chebi_ontology owl:Class CHEBI:36680 biolink:NamedThing heteranthrene monarch-merged.owl owl:Class CHEBI:38093 biolink:NamedThing phenothiazines monarch-merged.owl owl:Class CHEBI:38111 biolink:NamedThing benzoindole monarch-merged.owl owl:Class CHEBI:38607 biolink:NamedThing dibenzazecine monarch-merged.owl owl:Class CHEBI:38920 biolink:NamedThing benzochromene monarch-merged.owl owl:Class CHEBI:38922 biolink:NamedThing dibenzofurans monarch-merged.owl owl:Class CHEBI:38924 biolink:NamedThing dibenzothiepine monarch-merged.owl dibenzothiepines chebi_ontology owl:Class CHEBI:39205 biolink:NamedThing dibenzopyrrole monarch-merged.owl owl:Class CHEBI:39206 biolink:NamedThing dibenzopyridine monarch-merged.owl owl:Class CHEBI:39268 biolink:NamedThing dibenzothiazepine monarch-merged.owl owl:Class CHEBI:39270 biolink:NamedThing naphthofuran monarch-merged.owl owl:Class CHEBI:39432 biolink:NamedThing furochromene monarch-merged.owl owl:Class CHEBI:47804 biolink:NamedThing dibenzoazepine monarch-merged.owl dibenzoazepine|dibenzoazepines|dibenzazepine chebi_ontology owl:Class CHEBI:50918 biolink:NamedThing pyrroloquinoline monarch-merged.owl owl:Class CHEBI:61692 biolink:NamedThing pyridoisoquinoline An organic heterotricyclic compound with a skeleton derived from a pyridine ring fused to an isoquinoline. monarch-merged.owl pyridoisoquinolines chebi_ontology owl:Class CHEBI:63169 biolink:NamedThing pyranopterin monarch-merged.owl owl:Class CHEBI:64547 biolink:NamedThing imidazoindole monarch-merged.owl owl:Class CHEBI:64548 biolink:NamedThing pyrazinoquinazoline monarch-merged.owl owl:Class CHEBI:86027 biolink:NamedThing naphthopyran monarch-merged.owl owl:Class CHEBI:9516 biolink:NamedThing thapsigargin monarch-merged.owl owl:Class CHEBI:37407 biolink:NamedThing cyclic ether monarch-merged.owl owl:Class CHEBI:23243 biolink:NamedThing cineole monarch-merged.owl owl:Class CHEBI:26911 biolink:NamedThing oxolane monarch-merged.owl owl:Class CHEBI:49106 biolink:NamedThing oxepane monarch-merged.owl owl:Class CHEBI:137945 biolink:NamedThing N-carbamoyl-L-methionine monarch-merged.owl owl:Class CHEBI:16552 biolink:NamedThing N-formyl-L-methionine monarch-merged.owl owl:Class CHEBI:25268 biolink:NamedThing methyl-L-methionine monarch-merged.owl owl:Class CHEBI:49643 biolink:NamedThing (2R)-3-HYDROXY-2-METHYLPROPANOIC ACID monarch-merged.owl owl:Class CHEBI:62509 biolink:NamedThing 2-O-(alpha-D-glucopyranosyl)-D-glyceric acid monarch-merged.owl owl:Class CHEBI:23849 biolink:NamedThing diterpenoid Any terpenoid derived from a diterpene. The term includes compounds in which the C20 skeleton of the parent diterpene has been rearranged or modified by the removal of one or more skeletal atoms (generally methyl groups). monarch-merged.owl diterpenoids|diterpenoides|C20 isoprenoids LIPID_MAPS_class:LMPR0104 chebi_ontology owl:Class CHEBI:138429 biolink:NamedThing isopimarane diterpenoid monarch-merged.owl owl:Class CHEBI:17327 biolink:NamedThing phytol monarch-merged.owl owl:Class CHEBI:24229 biolink:NamedThing geranylgeraniol monarch-merged.owl owl:Class CHEBI:36760 biolink:NamedThing ent-kaurane diterpenoid monarch-merged.owl owl:Class CHEBI:36762 biolink:NamedThing abietane diterpenoid monarch-merged.owl owl:Class CHEBI:36770 biolink:NamedThing labdane diterpenoid monarch-merged.owl owl:Class CHEBI:37532 biolink:NamedThing phorbol ester Esters of phorbol, originally found in croton oil (from Croton tiglium, of the family Euphorbiaceae). A number of phorbol esters possess activity as tumour promoters and activate the mechanisms associated with cell growth. Some of these are used in experiments as activators of protein kinase C. monarch-merged.owl phorbol ester PMID:27007372|PMID:17661218|PMID:19944127 chebi_ontology owl:Class CHEBI:3918 biolink:NamedThing crocetin monarch-merged.owl owl:Class CHEBI:49192 biolink:NamedThing pimarane diterpenoid monarch-merged.owl owl:Class CHEBI:49193 biolink:NamedThing diterpene lactone monarch-merged.owl owl:Class CHEBI:50387 biolink:NamedThing tuberculosinol monarch-merged.owl owl:Class CHEBI:52557 biolink:NamedThing tetracyclic diterpenoid A diterpenoid with a tetracyclic skeleton. monarch-merged.owl tetracyclic diterpenoids chebi_ontology owl:Class CHEBI:53186 biolink:NamedThing apo carotenoid diterpenoid monarch-merged.owl owl:Class CHEBI:53666 biolink:NamedThing kaurane diterpenoid monarch-merged.owl owl:Class CHEBI:59686 biolink:NamedThing halimane diterpenoid monarch-merged.owl owl:Class CHEBI:60687 biolink:NamedThing cembrane diterpenoid monarch-merged.owl owl:Class CHEBI:60952 biolink:NamedThing diterpene phytoalexin monarch-merged.owl owl:Class CHEBI:66964 biolink:NamedThing Delta(9)-tetrahydrocannabinol monarch-merged.owl owl:Class CHEBI:67078 biolink:NamedThing Delta(9)-tetrahydrocannabinolic acid monarch-merged.owl owl:Class CHEBI:73268 biolink:NamedThing gibberellin ester monarch-merged.owl owl:Class CHEBI:78352 biolink:NamedThing cyclooctat-9-en-7-ol monarch-merged.owl owl:Class CHEBI:79084 biolink:NamedThing tricyclic diterpenoid monarch-merged.owl owl:Class CHEBI:137566 biolink:NamedThing EC 2.5.1.48 (cystathionine gamma-synthase) inhibitor monarch-merged.owl owl:Class CHEBI:76663 biolink:NamedThing EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitor A transferase inhibitor that inhibits the transfer of an alkyl (other than methyl) or aryl group (EC 2.5.1.*). monarch-merged.owl alkyl/aryl (non-methyl) transferase inhibitor|non-methyl-alkyl or aryl transferase inhibitors|EC 2.5.1.* inhibitor|non-methyl alkyl/aryl transferase inhibitor|non-methyl alkyl/aryl transferase (EC 2.5.1.*) inhibitors|non-methyl-alkyl or aryl transferase inhibitor|non-methyl alkyl/aryl transferase (EC 2.5.1.*) inhibitor|EC 2.5.1.* inhibitors|alkyl/aryl (non-methyl) transferase inhibitors|EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitors|non-methyl alkyl/aryl transferase inhibitors chebi_ontology owl:Class CHEBI:20569 biolink:NamedThing EC 2.5.1.19 (3-phosphoshikimate 1-carboxyvinyltransferase) inhibitor monarch-merged.owl owl:Class CHEBI:50502 biolink:NamedThing EC 2.5.1.15 (dihydropteroate synthase) inhibitor monarch-merged.owl owl:Class CHEBI:64133 biolink:NamedThing EC 2.5.1.58 (protein farnesyltransferase) inhibitor monarch-merged.owl owl:Class CHEBI:64411 biolink:NamedThing EC 2.5.1.29 (geranylgeranyl diphosphate synthase) inhibitor monarch-merged.owl owl:Class CHEBI:77089 biolink:NamedThing EC 2.5.1.49 (O-acetylhomoserine aminocarboxypropyltransferase) inhibitor monarch-merged.owl owl:Class CHEBI:78379 biolink:NamedThing EC 2.5.1.7 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase) inhibitor monarch-merged.owl owl:Class CHEBI:137567 biolink:NamedThing 11(S)-HETE(1-) monarch-merged.owl owl:Class CHEBI:78836 biolink:NamedThing 11(R)-HETE(1-) monarch-merged.owl owl:Class CHEBI:137568 biolink:NamedThing Cer(d34:0) monarch-merged.owl owl:Class CHEBI:137569 biolink:NamedThing Cer(d34:1) monarch-merged.owl owl:Class CHEBI:137570 biolink:NamedThing Cer(d38:1) monarch-merged.owl owl:Class CHEBI:137572 biolink:NamedThing Cer(d41:1) monarch-merged.owl owl:Class CHEBI:137574 biolink:NamedThing Cer(d44:0) monarch-merged.owl owl:Class CHEBI:139048 biolink:NamedThing dihydroceramide An N-acylsphingoid obtained by formal condensation of the carboxy group of any fatty acid with the amino group of any dihydrosphingoid base. monarch-merged.owl dihydroceramides|N-acyldihydrosphingoid|a dihydroceramide|N-acyldihydrosphingoids 0 C5H9NO3R2 131.130 131.05824 OC[C@@H]([C@H](O)C*)NC(=O)* chebi_ontology owl:Class CHEBI:139051 biolink:NamedThing phytoceramide monarch-merged.owl owl:Class CHEBI:144703 biolink:NamedThing N-palmitoyl-sphingoid base monarch-merged.owl owl:Class CHEBI:52639 biolink:NamedThing N-acylsphingosine monarch-merged.owl owl:Class CHEBI:71986 biolink:NamedThing C20 ceramide monarch-merged.owl owl:Class CHEBI:85777 biolink:NamedThing Cer(d42:1) monarch-merged.owl owl:Class CHEBI:85812 biolink:NamedThing Cer(d42:2) monarch-merged.owl owl:Class CHEBI:13757 biolink:NamedThing n-alk-2-enal monarch-merged.owl owl:Class CHEBI:137934 biolink:NamedThing polyprenal monarch-merged.owl owl:Class CHEBI:138599 biolink:NamedThing 4,4'-diapolycopen-4-al monarch-merged.owl owl:Class CHEBI:15035 biolink:NamedThing retinal monarch-merged.owl owl:Class CHEBI:15368 biolink:NamedThing acrolein monarch-merged.owl owl:Class CHEBI:15825 biolink:NamedThing 3-methylbut-2-enal monarch-merged.owl owl:Class CHEBI:17457 biolink:NamedThing 14'-apo-beta-carotenal monarch-merged.owl owl:Class CHEBI:22144 biolink:NamedThing abscisic aldehyde monarch-merged.owl owl:Class CHEBI:23245 biolink:NamedThing cinnamaldehydes monarch-merged.owl owl:Class CHEBI:24012 biolink:NamedThing farnesal monarch-merged.owl owl:Class CHEBI:24551 biolink:NamedThing hexadienal monarch-merged.owl owl:Class CHEBI:32304 biolink:NamedThing 2-cis,4-trans-xanthoxin monarch-merged.owl owl:Class CHEBI:51921 biolink:NamedThing heptadienal monarch-merged.owl owl:Class CHEBI:53153 biolink:NamedThing 10'-apo-beta-carotenal monarch-merged.owl owl:Class CHEBI:53154 biolink:NamedThing 8'-apo-beta,psi-caroten-8'-al monarch-merged.owl owl:Class CHEBI:53155 biolink:NamedThing 2,6-dimethylocta-2,4,6-trienedial monarch-merged.owl owl:Class CHEBI:53157 biolink:NamedThing 4'-apo-beta-carotenal monarch-merged.owl owl:Class CHEBI:53159 biolink:NamedThing (3R)-3-hydroxy-8'-apo-beta-carotenal monarch-merged.owl owl:Class CHEBI:53166 biolink:NamedThing crocetin dialdehyde monarch-merged.owl owl:Class CHEBI:53171 biolink:NamedThing 4,9-dimethyldodeca-2,4,6,8,10-pentaenedial monarch-merged.owl owl:Class CHEBI:53176 biolink:NamedThing 4-methylocta-2,4,6-trienedial monarch-merged.owl owl:Class CHEBI:62450 biolink:NamedThing 4,4'-diapolycopenedial monarch-merged.owl owl:Class CHEBI:67192 biolink:NamedThing 9-cis-10'-apo-beta-carotenal monarch-merged.owl owl:Class CHEBI:73152 biolink:NamedThing 2,6-dimethyldeca-2,4,6,8-tetraenedial monarch-merged.owl owl:Class CHEBI:79065 biolink:NamedThing 4,4'-diaponeurosporenal monarch-merged.owl owl:Class CHEBI:137580 biolink:NamedThing 2-[(11R)-hydroxy-(5Z,8Z,12E,14Z)-icosatetraenoyl]-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:167121 biolink:NamedThing oxidized 2-acyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:137581 biolink:NamedThing 2-[(5Z,13E,15S)-11alpha,15-dihydroxy-9-oxoprosta-5,13-dien-1-oyl]-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:138098 biolink:NamedThing 2-[(9S,11R)-epidioxy-(15S)-hydroperoxy-(5Z,13E)-prostadienoyl]-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:138099 biolink:NamedThing 2-[(9S,11R)-epidioxy-(15S)-hydroxy-(5Z,13E)-prostadienoyl]-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:65213 biolink:NamedThing 2-acyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:76088 biolink:NamedThing 2-oleoyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:76090 biolink:NamedThing 2-linoleoyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:76091 biolink:NamedThing 2-arachidonoyl-sn-glycero-3-phosphoethanolamine zwitterion monarch-merged.owl owl:Class CHEBI:137586 biolink:NamedThing alkyl,acylglyceride monarch-merged.owl owl:Class CHEBI:47778 biolink:NamedThing glyceride Any ester resulting from the condensation of one or more of the hydroxy groups of glycerol (propane-1,2,3-triol) with fatty acids. monarch-merged.owl glycerides|glyceride|acylglycerols CHEBI:22230|CHEBI:13730 chebi_ontology owl:Class CHEBI:157759 biolink:NamedThing glycosylmonoacylglycerol monarch-merged.owl owl:Class CHEBI:17408 biolink:NamedThing monoacylglycerol monarch-merged.owl owl:Class CHEBI:17855 biolink:NamedThing triglyceride Any glyceride resulting from the condensation of all three hydroxy groups of glycerol (propane-1,2,3-triol) with fatty acids. monarch-merged.owl Triglyzerid|Triglycerid|triglycerides|Triacylglycerol|a triacylglycerol|triacylglycerols|Triglyceride 0 C6H5O6R3 173.10030 173.00861 [*]C(=O)OCC(COC([*])=O)OC([*])=O KEGG:C00422|LIPID_MAPS_class:LMGL0301|PMID:2474544 CHEBI:9664|CHEBI:27085|CHEBI:15255 chebi_ontology owl:Class CHEBI:18035 biolink:NamedThing diglyceride monarch-merged.owl owl:Class CHEBI:22335 biolink:NamedThing alkylglycerone phosphate monarch-merged.owl owl:Class CHEBI:37812 biolink:NamedThing dialkylglycerol monarch-merged.owl owl:Class CHEBI:598 biolink:NamedThing 1-alkyl-2-acylglycerol monarch-merged.owl owl:Class CHEBI:64590 biolink:NamedThing monoalkyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:74050 biolink:NamedThing CDP-2,3-bis-O-(phytanyl)-sn-glycerol monarch-merged.owl owl:Class CHEBI:74081 biolink:NamedThing 1-archaetidyl-1D-myo-inositol 3-phosphate monarch-merged.owl owl:Class CHEBI:75882 biolink:NamedThing 1-alkyl-2-acetylglycerol monarch-merged.owl owl:Class CHEBI:75883 biolink:NamedThing monoalkylglycerol monarch-merged.owl owl:Class CHEBI:75914 biolink:NamedThing 1-oleoyl-2-O-arachidonyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:76225 biolink:NamedThing 1-alkyl-3-acylglycerol monarch-merged.owl owl:Class CHEBI:76583 biolink:NamedThing alk-1-enylacylglycerol monarch-merged.owl owl:Class CHEBI:76584 biolink:NamedThing monoalkyldiacylglycerol monarch-merged.owl owl:Class CHEBI:77575 biolink:NamedThing alkyl,acyl-sn-glycerol 3-phosphate(2-) monarch-merged.owl owl:Class CHEBI:77998 biolink:NamedThing 1(3)-O-(alk-1-enyl)-glycerol monarch-merged.owl owl:Class CHEBI:78189 biolink:NamedThing alkylacylglycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:78196 biolink:NamedThing monoalkylglycerophosphocholine monarch-merged.owl owl:Class CHEBI:76578 biolink:NamedThing diradylglycerol monarch-merged.owl owl:Class CHEBI:138630 biolink:NamedThing 2-hydroxyhexanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138632 biolink:NamedThing 2-hydroxy-3-methylundecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138633 biolink:NamedThing 2-hydroxy-3-methylnonanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:138636 biolink:NamedThing 2-hydroxy-3-methyldodecanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:61406 biolink:NamedThing trans-dec-2-enoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:77061 biolink:NamedThing 4,8-dimethylnonanoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:84214 biolink:NamedThing 9-decenoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:85108 biolink:NamedThing trans-3-cis-5-octadienoyl-CoA(4-) monarch-merged.owl owl:Class CHEBI:137598 biolink:NamedThing 4-aminosalicylate(1-) monarch-merged.owl owl:Class CHEBI:16567 biolink:NamedThing anthranilate monarch-merged.owl owl:Class CHEBI:36558 biolink:NamedThing 3-hydroxy-4-methylanthranilate monarch-merged.owl owl:Class CHEBI:71959 biolink:NamedThing 3-amino-5-hydroxybenzoate monarch-merged.owl owl:Class CHEBI:137600 biolink:NamedThing 2-hydroxy-7,8-dihydropteroate monarch-merged.owl owl:Class CHEBI:25388 biolink:NamedThing monohydroxybenzoate A hydroxybenzoate carrying a single hydroxy substituent at unspecified position. monarch-merged.owl monohydroxybenzoates owl:Class CHEBI:36085 biolink:NamedThing trihydroxybenzoate monarch-merged.owl owl:Class CHEBI:36658 biolink:NamedThing 6-methylsalicylate monarch-merged.owl owl:Class CHEBI:57833 biolink:NamedThing N-benzoyl-4-hydroxyanthranilate monarch-merged.owl owl:Class CHEBI:60878 biolink:NamedThing 3-geranyl-4-hydroxybenzoate(1-) monarch-merged.owl owl:Class CHEBI:84443 biolink:NamedThing 3-methoxy-4-hydroxy-5-all-trans-polyprenylbenzoate monarch-merged.owl owl:Class CHEBI:15489 biolink:NamedThing 3-oxo-fatty acyl-CoA monarch-merged.owl owl:Class CHEBI:15345 biolink:NamedThing acetoacetyl-CoA monarch-merged.owl owl:Class CHEBI:15476 biolink:NamedThing 2-methylacetoacetyl-CoA monarch-merged.owl owl:Class CHEBI:15490 biolink:NamedThing 3-oxoadipyl-CoA monarch-merged.owl owl:Class CHEBI:15492 biolink:NamedThing 3-oxopimeloyl-CoA monarch-merged.owl owl:Class CHEBI:27648 biolink:NamedThing 3-oxohexanoyl-CoA monarch-merged.owl owl:Class CHEBI:27868 biolink:NamedThing 3-oxolauroyl-CoA monarch-merged.owl owl:Class CHEBI:28168 biolink:NamedThing 6-oxocyclohex-1-ene-1-carbonyl-CoA monarch-merged.owl owl:Class CHEBI:28264 biolink:NamedThing 3-oxooctanoyl-CoA monarch-merged.owl owl:Class CHEBI:28528 biolink:NamedThing 3-oxodecanoyl-CoA monarch-merged.owl owl:Class CHEBI:28726 biolink:NamedThing 3-oxotetradecanoyl-CoA monarch-merged.owl owl:Class CHEBI:52043 biolink:NamedThing 7-methyl-3-oxooct-6-enoyl-CoA monarch-merged.owl owl:Class CHEBI:52327 biolink:NamedThing 3-oxoicosanoyl-CoA monarch-merged.owl owl:Class CHEBI:73975 biolink:NamedThing 3-oxo-octacosanoyl-CoA monarch-merged.owl owl:Class CHEBI:74355 biolink:NamedThing 3-oxotriacontanoyl-CoA monarch-merged.owl owl:Class CHEBI:17839 biolink:NamedThing 7,8-dihydropteroate monarch-merged.owl owl:Class CHEBI:38793 biolink:NamedThing pteroate monarch-merged.owl 0 C14H11N6O3 311.276 311.08926 CHEBI:37074 chebi_ontology owl:Class CHEBI:85414 biolink:NamedThing (6S)-5,6,7,8-tetrahydropteroate monarch-merged.owl owl:Class CHEBI:137626 biolink:NamedThing EC 1.1.1.146 (11beta-hydroxysteroid dehydrogenase) inhibitor monarch-merged.owl owl:Class CHEBI:76835 biolink:NamedThing EC 1.1.1.* (oxidoreductase acting on donor CH-OH group, NAD(+) or NADP(+) acceptor) inhibitor An EC 1.1.* (oxidoreductase acting on donor CH-OH group) inhibitor that uses NAD(+) or NADP(+) as acceptor (EC 1.1.1.*). monarch-merged.owl EC 1.1.1.* inhibitors|oxidoreductase acting on donor CH-OH group, NAD(+) or NADP(+) acceptor (EC 1.1.1.*) inhibitor|EC 1.1.1.* (oxidoreductase acting on donor CH-OH group, NAD(+) or NADP(+)acceptor) inhibitors|oxidoreductase acting on donor CH-OH group, NAD(+) or NADP(+) acceptor (EC 1.1.1.*) inhibitors|EC 1.1.1.* inhibitor chebi_ontology owl:Class CHEBI:138390 biolink:NamedThing EC 1.1.1.159 (7alpha-hydroxysteroid dehydrogenase) inhibitor monarch-merged.owl owl:Class CHEBI:35664 biolink:NamedThing EC 1.1.1.34/EC 1.1.1.88 (hydroxymethylglutaryl-CoA reductase) inhibitor Any EC 1.1.1.* (oxidoreductase acting on donor CH-OH group, NAD(+) or NADP(+) acceptor) inhibitor that inhibits HMG-CoA reductases. Hydroxymethylglutaryl-CoA reductase inhibitors have been shown to lower directly cholesterol synthesis. The Enzyme Commission designation is EC 1.1.1.34 for the NADPH-dependent enzyme and EC 1.1.1.88 for an NADH-dependent enzyme. monarch-merged.owl HMG-CoA reductase inhibitors|hydroxymethylglutaryl-CoA reductase inhibitor|hydroxymethylglutaryl-CoA reductase inhibitors|HMG-CoA reductase inhibitor PMID:1464741|PMID:20467214|PMID:15531285|Wikipedia:HMG-CoA_reductase chebi_ontology owl:Class CHEBI:48550 biolink:NamedThing EC 1.1.1.21 (aldehyde reductase) inhibitor monarch-merged.owl owl:Class CHEBI:50269 biolink:NamedThing EC 1.1.1.1 (alcohol dehydrogenase) inhibitor monarch-merged.owl owl:Class CHEBI:53746 biolink:NamedThing EC 1.1.1.205 (IMP dehydrogenase) inhibitor monarch-merged.owl owl:Class CHEBI:73136 biolink:NamedThing EC 1.1.1.184 [carbonyl reductase (NADPH)] inhibitor monarch-merged.owl owl:Class CHEBI:77108 biolink:NamedThing EC 1.1.1.141 [15-hydroxyprostaglandin dehydrogenase (NAD(+))] inhibitor monarch-merged.owl owl:Class CHEBI:77119 biolink:NamedThing EC 1.1.1.189 (prostaglandin-E2 9-reductase) inhibitor An EC 1.1.1.* (oxidoreductase acting on donor CH-OH group, NAD(+) or NADP(+) acceptor) inhibitor that interferes with the action of prostaglandin-E2 9-reductase (EC 1.1.1.189). monarch-merged.owl PGE2-9-ketoreductase inhibitor|prostaglandin E2-9-oxoreductase inhibitors|PGE2 9-oxoreductase inhibitors|PGE-9-ketoreductase inhibitors|prostaglandin E 9-ketoreductase inhibitor|PGE2-9-OR inhibitor|(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP(+) 9-oxidoreductase inhibitors|prostaglandin-E2 9-reductase (EC 1.1.1.189) inhibitor|PGE-9-ketoreductase inhibitor|9-keto-prostaglandin E2 reductase inhibitor|PGE2-9-OR inhibitors|EC 1.1.1.189 inhibitor|prostaglandin E 9-ketoreductase inhibitors|EC 1.1.1.189 inhibitors|prostaglandin-E2 9-reductase (EC 1.1.1.189) inhibitors|reductase, 15-hydroxy-9-oxoprostaglandin inhibitors|reductase, 15-hydroxy-9-oxoprostaglandin inhibitor|PGE2 9-oxoreductase inhibitor|9-ketoprostaglandin reductase inhibitors|EC 1.1.1.189 (prostaglandin-E2 9-reductase) inhibitors|9-ketoprostaglandin reductase inhibitor|PGE2-9-ketoreductase inhibitors|prostaglandin 9-ketoreductase inhibitors|prostaglandin E2-9-oxoreductase inhibitor|prostaglandin 9-ketoreductase inhibitor|(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP(+) 9-oxidoreductase inhibitor|9-keto-prostaglandin E2 reductase inhibitors Wikipedia:Prostaglandin-E2_9-reductase chebi_ontology owl:Class CHEBI:77425 biolink:NamedThing EC 1.1.1.188 (prostaglandin-F synthase) inhibitor An EC 1.1.1.* (oxidoreductase acting on donor CH-OH group, NAD(+) or NADP(+) acceptor) inhibitor that interferes with the action of prostaglandin-F synthase (EC 1.1.1.188). monarch-merged.owl prostaglandin F synthetase inhibitors|PGF2alpha synthetase inhibitor|prostaglandin-D2 11-reductase inhibitor|PGD2 11-ketoreductase inhibitors|prostaglandin 11-ketoreductase inhibitors|PGF synthetase inhibitor|reductase, 15-hydroxy-11-oxoprostaglandin inhibitors|NADPH-dependent prostaglandin D2 11-keto reductase inhibitors|prostaglandin F synthetase inhibitor|prostaglandin F synthase inhibitor|(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP(+) 11-oxidoreductase inhibitors|PGD2 11-ketoreductase inhibitor|prostaglandin 11-keto reductase inhibitors|prostaglandin 11-keto reductase inhibitor|prostaglandin D2-ketoreductase inhibitor|prostaglandin-D2 11-reductase inhibitors|PGF2alpha synthetase inhibitors|EC 1.1.1.188 inhibitor|PGF synthetase inhibitors|(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP(+) 11-oxidoreductase inhibitor|EC 1.1.1.188 inhibitors|prostaglandin D2-ketoreductase inhibitors|reductase, 15-hydroxy-11-oxoprostaglandin inhibitor|synthetase, prostaglandin F2alpha inhibitors|EC 1.1.1.188 (prostaglandin-F synthase) inhibitors|synthetase, prostaglandin F2alpha inhibitor|prostaglandin 11-ketoreductase inhibitor|prostaglandin F synthase inhibitors|NADPH-dependent prostaglandin D2 11-keto reductase inhibitor owl:Class CHEBI:77484 biolink:NamedThing EC 1.1.1.25 (shikimate dehydrogenase) inhibitor monarch-merged.owl owl:Class CHEBI:77654 biolink:NamedThing EC 1.1.1.267 (1-deoxy-D-xylulose-5-phosphate reductoisomerase) inhibitor monarch-merged.owl owl:Class CHEBI:15455 biolink:NamedThing (S)-3-hydroxyacyl-CoA monarch-merged.owl owl:Class CHEBI:15454 biolink:NamedThing (3S)-3-carboxy-3-hydroxypropanoyl-CoA monarch-merged.owl owl:Class CHEBI:15459 biolink:NamedThing (3S)-citryl-CoA monarch-merged.owl owl:Class CHEBI:76425 biolink:NamedThing (S)-3-hydroxyoctanedioyl-CoA monarch-merged.owl owl:Class CHEBI:76429 biolink:NamedThing (S)-3-hydroxydodecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:76444 biolink:NamedThing (S)-3-hydroxydecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:77169 biolink:NamedThing (3S)-hydroxytetradecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:77199 biolink:NamedThing (3S)-hydroxyhexadecanedioyl-CoA monarch-merged.owl owl:Class CHEBI:137667 biolink:NamedThing 3-[beta-D-glucopyranosyl-(1->6)-beta-D-galactopyranosyl]-1,2-diacyl-sn-glycerol monarch-merged.owl owl:Class CHEBI:24385 biolink:NamedThing glycoglycerolipid monarch-merged.owl owl:Class CHEBI:16295 biolink:NamedThing alpha-D-glucosyl-(1->6)-alpha-D-glucosyl-(1->6)-alpha-D-glucosyl-(1->3')-1-alkyl-2-acylglycerol monarch-merged.owl owl:Class CHEBI:24145 biolink:NamedThing galactoglycerolipid monarch-merged.owl owl:Class CHEBI:24262 biolink:NamedThing glucoglycerolipid monarch-merged.owl owl:Class CHEBI:24410 biolink:NamedThing glycosylphosphatidylinositol monarch-merged.owl owl:Class CHEBI:63786 biolink:NamedThing beta-D-Glc-(1->6)-beta-D-Glc-(1->3')-1,2-diacylglycerol monarch-merged.owl owl:Class CHEBI:63788 biolink:NamedThing alpha-D-Glc-(1->2)-alpha-D-Glc-(1->3')-1,2-diacylglycerol monarch-merged.owl owl:Class CHEBI:67150 biolink:NamedThing beta-D-Glc-(1->3')-1,2-diacylglycerol monarch-merged.owl owl:Class CHEBI:76265 biolink:NamedThing 1,2-diacyl-3-O-(beta-D-Glc-(1->6)-beta-D-Glc-(1->6)-beta-D-Glc)-sn-glycerol monarch-merged.owl owl:Class CHEBI:64987 biolink:NamedThing S-conjugate monarch-merged.owl owl:Class CHEBI:29256 biolink:NamedThing thiol An organosulfur compound in which a thiol group, -SH, is attached to a carbon atom of any aliphatic or aromatic moiety. monarch-merged.owl thiols|Mercaptan|a thiol|Thiol|RSH|Merkaptan|mercaptans 0 HSR 33.07300 32.97990 S[*] Wikipedia:Thiol|KEGG:C00145 CHEBI:9556|CHEBI:17366|CHEBI:26969|CHEBI:13696|CHEBI:13443|CHEBI:8766 chebi_ontology owl:Class CHEBI:16753 biolink:NamedThing pantetheine monarch-merged.owl owl:Class CHEBI:16768 biolink:NamedThing mycothiol monarch-merged.owl owl:Class CHEBI:17141 biolink:NamedThing cysteamine monarch-merged.owl owl:Class CHEBI:23853 biolink:NamedThing dithiol monarch-merged.owl owl:Class CHEBI:38933 biolink:NamedThing 3-aminopropane-1-thiol monarch-merged.owl owl:Class CHEBI:47908 biolink:NamedThing alkanethiol monarch-merged.owl owl:Class CHEBI:82711 biolink:NamedThing aryl thiol monarch-merged.owl owl:Class CHEBI:59786 biolink:NamedThing thioaldehyde monarch-merged.owl owl:Class CHEBI:18379 biolink:NamedThing nitrile monarch-merged.owl owl:Class CHEBI:17346 biolink:NamedThing 4-chlorophenylacetonitrile monarch-merged.owl owl:Class CHEBI:18043 biolink:NamedThing ricinine monarch-merged.owl owl:Class CHEBI:24730 biolink:NamedThing hydroxynitrile monarch-merged.owl owl:Class CHEBI:3259 biolink:NamedThing CCCP monarch-merged.owl owl:Class CHEBI:33187 biolink:NamedThing oxomalononitrile monarch-merged.owl owl:Class CHEBI:33189 biolink:NamedThing hydrazonomalononitrile monarch-merged.owl owl:Class CHEBI:45075 biolink:NamedThing 7-cyano-7-deazaguanine monarch-merged.owl owl:Class CHEBI:51308 biolink:NamedThing dinitrile monarch-merged.owl owl:Class CHEBI:80291 biolink:NamedThing aliphatic nitrile monarch-merged.owl owl:Class CHEBI:83920 biolink:NamedThing 4-(4-chlorophenyl)-2-phenyl-2-(1,2,4-triazol-1-ylmethyl)butanenitrile monarch-merged.owl owl:Class CHEBI:62894 biolink:NamedThing organic triphosphate monarch-merged.owl owl:Class CHEBI:25216 biolink:NamedThing metalloporphyrin monarch-merged.owl metalloporphyrins|metaloporphyrins chebi_ontology owl:Class CHEBI:25111 biolink:NamedThing magnesium porphyrin monarch-merged.owl owl:Class CHEBI:36158 biolink:NamedThing metalloprotoporphyrin A metal--protoporphyrin coordination complex. monarch-merged.owl metalloprotoporphyrins chebi_ontology owl:Class CHEBI:3790 biolink:NamedThing cobalt-precorrin-2 monarch-merged.owl owl:Class CHEBI:3791 biolink:NamedThing cobalt-precorrin-3 monarch-merged.owl owl:Class CHEBI:52491 biolink:NamedThing cobalt-sirohydrochlorin monarch-merged.owl owl:Class CHEBI:60454 biolink:NamedThing Fe-coproporphyrin III monarch-merged.owl owl:Class CHEBI:62804 biolink:NamedThing metallochlorin monarch-merged.owl owl:Class CHEBI:73373 biolink:NamedThing cobalt(II)-factor III monarch-merged.owl owl:Class CHEBI:85905 biolink:NamedThing cobalt(II)-factor IV monarch-merged.owl owl:Class CHEBI:137682 biolink:NamedThing methylhistidine monarch-merged.owl methylhistidines chebi_ontology owl:Class CHEBI:24599 biolink:NamedThing histidine derivative An amino acid derivative resulting from reaction of histidine at the amino group or the carboxy group, or from the replacement of any hydrogen of histidine by a heteroatom. The definition normally excludes peptides containing alanine residues. monarch-merged.owl histidine derivatives chebi_ontology owl:Class CHEBI:86910 biolink:NamedThing N-acetylhistidine monarch-merged.owl owl:Class CHEBI:137684 biolink:NamedThing Papio hamadryas metabolite monarch-merged.owl owl:Class CHEBI:15456 biolink:NamedThing (R)-3-hydroxyacyl-CoA monarch-merged.owl owl:Class CHEBI:37050 biolink:NamedThing 3-hydroxybutanoyl-CoA monarch-merged.owl owl:Class CHEBI:71038 biolink:NamedThing 3-hydroxyadipyl-CoA monarch-merged.owl owl:Class CHEBI:73549 biolink:NamedThing 3-hydroxy-3-(4-hydroxyphenyl)propionyl-CoA monarch-merged.owl owl:Class CHEBI:137789 biolink:NamedThing 7,12-dioxolithocholate monarch-merged.owl owl:Class CHEBI:137880 biolink:NamedThing ursocholate monarch-merged.owl owl:Class CHEBI:137881 biolink:NamedThing 3,7,12-trioxo-5beta-cholan-24-oate monarch-merged.owl owl:Class CHEBI:137882 biolink:NamedThing 7beta-hydroxy-3,12-dioxo-5beta-cholanate monarch-merged.owl owl:Class CHEBI:137886 biolink:NamedThing 3alpha,7beta-dihydroxy-12-oxo-5beta-cholanate monarch-merged.owl owl:Class CHEBI:15934 biolink:NamedThing 5-amino-6-(D-ribitylamino)uracil monarch-merged.owl owl:Class CHEBI:137811 biolink:NamedThing phenolic radical monarch-merged.owl owl:Class CHEBI:36872 biolink:NamedThing organic radical monarch-merged.owl owl:Class CHEBI:139521 biolink:NamedThing phenolic radical donor monarch-merged.owl owl:Class CHEBI:15817 biolink:NamedThing semiquinone monarch-merged.owl owl:Class CHEBI:16504 biolink:NamedThing monodehydro-L-ascorbic acid monarch-merged.owl owl:Class CHEBI:30737 biolink:NamedThing trichloromethyl(.) monarch-merged.owl owl:Class CHEBI:33544 biolink:NamedThing alpha-amino-acid radical monarch-merged.owl owl:Class CHEBI:36880 biolink:NamedThing organic radical ion monarch-merged.owl owl:Class CHEBI:88143 biolink:NamedThing (3,4-dimethoxyphenyl)methyloxidanyl monarch-merged.owl owl:Class CHEBI:33659 biolink:NamedThing organic aromatic compound monarch-merged.owl organic aromatic compounds chebi_ontology owl:Class CHEBI:21494 biolink:NamedThing N-acetoxyarylamine monarch-merged.owl owl:Class CHEBI:25692 biolink:NamedThing ommochrome monarch-merged.owl owl:Class CHEBI:26004 biolink:NamedThing phenylpropanoid monarch-merged.owl owl:Class CHEBI:26513 biolink:NamedThing quinolines A class of aromatic heterocyclic compounds each of which contains a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring. monarch-merged.owl chebi_ontology owl:Class CHEBI:33658 biolink:NamedThing arene Any monocyclic or polycyclic aromatic hydrocarbon. monarch-merged.owl aromatic hydrocarbons|arene|arenes chebi_ontology owl:Class CHEBI:33833 biolink:NamedThing heteroarene A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2). monarch-merged.owl hetarenes|heteroarenes chebi_ontology owl:Class CHEBI:33836 biolink:NamedThing benzenoid aromatic compound monarch-merged.owl benzenoid compound|benzenoid aromatic compounds chebi_ontology owl:Class CHEBI:51614 biolink:NamedThing diarylmethane monarch-merged.owl owl:Class CHEBI:62732 biolink:NamedThing aromatic ester An ester where the ester linkage is bonded directly to an aromatic system. monarch-merged.owl aromatic esters owl:Class CHEBI:64459 biolink:NamedThing biaryl An organic aromatic compound whose structure contains two aromatic rings or ring systems, joined to each other by a single bond. monarch-merged.owl biaryls chebi_ontology owl:Class CHEBI:87034 biolink:NamedThing aromatic fungicide monarch-merged.owl owl:Class CHEBI:62846 biolink:NamedThing 4-hydroxy steroid monarch-merged.owl owl:Class CHEBI:62845 biolink:NamedThing 4-hydroxy-17beta-estradiol monarch-merged.owl owl:Class CHEBI:137927 biolink:NamedThing CDP-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:57498 biolink:NamedThing ADP alpha-D-glucoside(2-) monarch-merged.owl owl:Class CHEBI:62230 biolink:NamedThing GDP-alpha-D-glucose(2-) monarch-merged.owl owl:Class CHEBI:24967 biolink:NamedThing ketogluconic acid monarch-merged.owl owl:Class CHEBI:66938 biolink:NamedThing keto-D-gluconic acid monarch-merged.owl owl:Class CHEBI:86363 biolink:NamedThing 2-dehydro-L-gluconic acid monarch-merged.owl owl:Class CHEBI:51353 biolink:NamedThing N-carbamoyl-L-alpha-amino acid monarch-merged.owl owl:Class CHEBI:137948 biolink:NamedThing N-carbamoyl-D-methionine monarch-merged.owl owl:Class CHEBI:17255 biolink:NamedThing N-carbamoyl-D-alpha-amino acid monarch-merged.owl owl:Class CHEBI:85210 biolink:NamedThing N-acetyl-D-methionine monarch-merged.owl owl:Class CHEBI:137954 biolink:NamedThing N(6)-[(E)-but-2-enoyl]-L-lysine residue monarch-merged.owl owl:Class CHEBI:137955 biolink:NamedThing N(6)-butyryl-L-lysine residue monarch-merged.owl owl:Class CHEBI:138019 biolink:NamedThing N(6)-propanoyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:138936 biolink:NamedThing N(6)-hexadecanoyl-L-lysine residue monarch-merged.owl owl:Class CHEBI:13796 biolink:NamedThing S-polyprenyl-L-cysteine monarch-merged.owl owl:Class CHEBI:47914 biolink:NamedThing S-prenyl-L-cysteine monarch-merged.owl owl:Class CHEBI:47915 biolink:NamedThing S-alkyl-L-cysteine monarch-merged.owl owl:Class CHEBI:137979 biolink:NamedThing D-galactosylglycerol monarch-merged.owl owl:Class CHEBI:24168 biolink:NamedThing galactosylglycerol monarch-merged.owl owl:Class CHEBI:137980 biolink:NamedThing metalloid atom An atom of an element that exhibits properties that are between those of metals and nonmetals, or that has a mixture of them. The term generally includes boron, silicon, germanium, arsenic, antimony, and tellurium, while carbon, aluminium, selenium, polonium, and astatine are less commonly included. monarch-merged.owl metalloid|metalloids Wikipedia:Metalloid chebi_ontology owl:Class CHEBI:25585 biolink:NamedThing nonmetal atom monarch-merged.owl nonmetal|no metal|non-metaux|no metales|Nichtmetall|Nichtmetalle|nonmetals|non-metal chebi_ontology owl:Class CHEBI:33318 biolink:NamedThing main group element atom An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table. monarch-merged.owl main group elements|Hauptgruppenelemente|Hauptgruppenelement|main group element chebi_ontology owl:Class CHEBI:33521 biolink:NamedThing metal atom An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity. monarch-merged.owl metals|metal element|metal elements|elemental metal|elemental metals Wikipedia:Metal|PMID:21784043|KEGG:C00050 CHEBI:25217|CHEBI:6788 chebi_ontology owl:Class CHEBI:33559 biolink:NamedThing s-block element atom monarch-merged.owl s-block element|s-block elements chebi_ontology owl:Class CHEBI:137984 biolink:NamedThing methylated secondary ammonium ion monarch-merged.owl owl:Class CHEBI:149484 biolink:NamedThing chloroquine(2+) A quinolinium ion obtained by protonation of the quinoline nitrogen and tertiary amino group of the antimalarial drug chloroquine. It is the major species at pH 7.3. monarch-merged.owl 7-chloro-4-{[5-(diethylazaniumyl)pentan-2-yl]amino}quinolinium|di-protonated chloroquine|chloroquine dication +2 C18H28ClN3 InChI=1S/C18H26ClN3/c1-4-22(5-2)12-6-7-14(3)21-17-10-11-20-18-13-15(19)8-9-16(17)18/h8-11,13-14H,4-7,12H2,1-3H3,(H,20,21)/p+2 WHTVZRBIWZFKQO-UHFFFAOYSA-P 321.890 321.19608 [NH+]1=CC=C(C=2C1=CC(Cl)=CC2)NC(CCC[NH+](CC)CC)C PMID:25693996 chebi_ontology owl:Class CHEBI:24129 biolink:NamedThing furans Compounds containing at least one furan ring. monarch-merged.owl oxacyclopenta-2,4-dienes chebi_ontology owl:Class CHEBI:15659 biolink:NamedThing (E)-2-(2-furyl)-3-(5-nitro-2-furyl)acrylamide monarch-merged.owl owl:Class CHEBI:17448 biolink:NamedThing methanofuran monarch-merged.owl owl:Class CHEBI:35559 biolink:NamedThing furan monarch-merged.owl owl:Class CHEBI:76246 biolink:NamedThing 2-methyl-5-methylenefuran-3,4-dione monarch-merged.owl owl:Class CHEBI:87230 biolink:NamedThing nitrofuran antibiotic monarch-merged.owl owl:Class CHEBI:138000 biolink:NamedThing 3-(1-methylpyrrolidin-2-yl)pyridine An N-alkylpyrrolidine that consists of N-methylpyrrolidine bearing a pyridin-3-yl substituent at position 2. monarch-merged.owl 3-(1-methylpyrrolidin-2-yl)pyridine 0 C10H14N2 InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3 SNICXCGAKADSCV-UHFFFAOYSA-N 162.232 162.11570 C=1C=C(C2N(CCC2)C)C=NC1 chebi_ontology owl:Class CHEBI:26416 biolink:NamedThing pyridine alkaloid monarch-merged.owl pyridine alkaloids chebi_ontology owl:Class CHEBI:15940 biolink:NamedThing nicotinic acid monarch-merged.owl owl:Class CHEBI:17154 biolink:NamedThing nicotinamide monarch-merged.owl owl:Class CHEBI:37753 biolink:NamedThing pseudooxynicotine monarch-merged.owl owl:Class CHEBI:26456 biolink:NamedThing pyrrolidine alkaloid monarch-merged.owl pyrrolidine alkaloids chebi_ontology owl:Class CHEBI:68641 biolink:NamedThing (-)-cotinine An N-alkylpyrrolidine that consists of N-methylpyrrolidinone bearing a pyridin-3-yl substituent at position C-5 (the 5S-enantiomer). It is an alkaloid commonly found in Nicotiana tabacum. monarch-merged.owl (S)-Cotinine|(S)-(-)-Cotinine|(5S)-1-methyl-5-(pyridin-3-yl)pyrrolidin-2-one|(S)-1-Methyl-5-(3-pyridinyl)-2-pyrrolidinone|cotinina|cotinine|cotininum 0 C10H12N2O InChI=1S/C10H12N2O/c1-12-9(4-5-10(12)13)8-3-2-6-11-7-8/h2-3,6-7,9H,4-5H2,1H3/t9-/m0/s1 UIKROCXWUNQSPJ-VIFPVBQESA-N 176.21510 176.09496 [H][C@]1(CCC(=O)N1C)c1cccnc1 PMID:22871902|PMID:22180597|PMID:22878732|Wikipedia:Cotinine|PMID:22574797|PMID:22487419|PMID:22169225|PMID:22899265|Reaxys:83099|PMID:22919158|KNApSAcK:C00034470|PMID:23011941|PMID:22244928|PMID:22678157|PMID:22809871|PMID:22137886|Drug_Central:737|LINCS:LSM-5986|PMID:21953524|CAS:486-56-6|MetaCyc:CPD-2742|PMID:23000417|HMDB:HMDB0001046|PMID:22489581|PMID:22770225|PMID:22027507|PMID:21655912|Reaxys:5736575|PMID:22608097|PMID:22200307|PMID:22434216|PMID:22687995|PMID:22460317|PMID:23087643|PMID:22253001|PMID:14700346 chebi_ontology owl:Class CHEBI:138007 biolink:NamedThing N-acetyl-alpha-D-hexosamine 1-phosphate(2-) monarch-merged.owl owl:Class CHEBI:138015 biolink:NamedThing endocrine disruptor Any compound that can disrupt the functions of the endocrine (hormone) system monarch-merged.owl endocrine disrupting chemical|endocrine-disrupting chemicals|hormonally active agents|endocrine disrupting compound|hormonally active agent|endocrine disrupting chemicals|endocrine disrupting compounds|endocrine-disrupting chemical|endocrine disruptors PMID:28356401|Wikipedia:Endocrine_disruptor|PMID:27929035|PMID:28526231 chebi_ontology owl:Class CHEBI:49020 biolink:NamedThing hormone antagonist A chemical substance which inhibits the function of the endocrine glands, the biosynthesis of their secreted hormones, or the action of hormones upon their specific sites. monarch-merged.owl hormone antagonists owl:Class CHEBI:7524 biolink:NamedThing nerolidol monarch-merged.owl owl:Class CHEBI:35294 biolink:NamedThing carbopolycyclic compound A polyclic compound in which all of the ring members are carbon atoms. monarch-merged.owl carbopolycyclic compounds chebi_ontology owl:Class CHEBI:33666 biolink:NamedThing polycyclic hydrocarbon monarch-merged.owl polycyclic hydrocarbons|polycyclic hydrocarbon chebi_ontology owl:Class CHEBI:51339 biolink:NamedThing adamantanes monarch-merged.owl owl:Class CHEBI:50027 biolink:NamedThing sabinene monarch-merged.owl owl:Class CHEBI:35192 biolink:NamedThing sesterterpene monarch-merged.owl owl:Class CHEBI:138226 biolink:NamedThing beta-geranylfarnesene monarch-merged.owl owl:Class CHEBI:25702 biolink:NamedThing organic peroxide monarch-merged.owl owl:Class CHEBI:38314 biolink:NamedThing pyrazines monarch-merged.owl chebi_ontology owl:Class CHEBI:16877 biolink:NamedThing oxidized Watasenia luciferin monarch-merged.owl owl:Class CHEBI:17216 biolink:NamedThing oxidized Cypridina luciferin monarch-merged.owl owl:Class CHEBI:30953 biolink:NamedThing pyrazine A diazine that is benzene in which the carbon atoms at positions 1 and 4 have been replaced by nitrogen atoms. monarch-merged.owl paradiazine|pyz|1,4-diazine|1,4-Diazin|Pyrazin|pyrazine|p-diazine 0 C4H4N2 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N 80.08804 80.03745 c1cnccn1 Beilstein:103905|HMDB:HMDB0034176|PMID:24964033|Reaxys:103905|Wikipedia:Pyrazine|CAS:290-37-9|Gmelin:1733 chebi_ontology owl:Class CHEBI:41487 biolink:NamedThing oxidized Oplophorus luciferin monarch-merged.owl owl:Class CHEBI:138094 biolink:NamedThing 1-(1Z-octadecenyl)-sn-glycero-3-phospho-(N-hexadecanoyl)ethanolamine monarch-merged.owl owl:Class CHEBI:138095 biolink:NamedThing 1-(1Z-octadecenyl)-sn-glycero-3-phospho-(N-oleoyl)ethanolamine monarch-merged.owl owl:Class CHEBI:138096 biolink:NamedThing 1-(1Z-octadecenyl)-sn-glycero-3-phospho-(N-arachidonoyl)ethanolamine monarch-merged.owl owl:Class CHEBI:138097 biolink:NamedThing 1-(1Z-octadecenyl)-sn-glycero-3-phosphate monarch-merged.owl owl:Class CHEBI:138103 biolink:NamedThing inorganic acid A Bronsted acid derived from one or more inorganic compounds. Inorganic acids (also known as mineral acids) form hydrons and conjugate base ions when dissolved in water. monarch-merged.owl inorganic acids|mineral acids|mineral acid Wikipedia:Mineral_acid chebi_ontology owl:Class CHEBI:39141 biolink:NamedThing Bronsted acid A molecular entity capable of donating a hydron to an acceptor (Bronsted base). monarch-merged.owl donneur d'hydron|Bronsted-Saeure|Bronsted acid|acide de Bronsted|hydron donor chebi_ontology owl:Class CHEBI:138105 biolink:NamedThing (S)-6-acetamido-3-aminohexanoic acid monarch-merged.owl owl:Class CHEBI:138110 biolink:NamedThing 16(S)-HETE monarch-merged.owl owl:Class CHEBI:34162 biolink:NamedThing 16(R)-HETE monarch-merged.owl owl:Class CHEBI:138111 biolink:NamedThing (3S)-3-hydroxy-L-aspartate residue monarch-merged.owl owl:Class CHEBI:138112 biolink:NamedThing chondroitin 4',6'-disulfate anion monarch-merged.owl owl:Class CHEBI:138121 biolink:NamedThing dermatan 4',6'-disulfate anion monarch-merged.owl owl:Class CHEBI:138369 biolink:NamedThing [4)-beta-D-GlcA-(1->4)-beta-D-GlcA2(or 3)Ac-(1->4)-beta-D-Glc-(1->4)-[(R)-4,6-CH3(COO(-))C-beta-D-Gal3(or 2)OHb-(1->3)-beta-D-Glc-(1->4)-beta-D-Glc-(1->4)-beta-D-Glc-(1->6)]-alpha-DGlc2(or 3)Ac-(1->]n monarch-merged.owl owl:Class CHEBI:62065 biolink:NamedThing chondroitin 6'-sulfate anion monarch-merged.owl owl:Class CHEBI:63679 biolink:NamedThing [4)-beta-D-GlcA-(1->4)-beta-D-GlcA2(or 3)Ac-(1->4)-beta-D-Glc-(1->4)-[(R)-4,6-CH3(COO(-))C-beta-D-Gal3(or 2)OHb-(1->3)-(S)-4,6-CH3(COO(-))C-beta-D-Glc-(1->4)-beta-D-Glc-(1->4)-beta-D-Glc-(1->6)]-alpha-DGlc2(or 3)Ac-(1->]n monarch-merged.owl owl:Class CHEBI:138135 biolink:NamedThing (13S)-hydroxy-(14S,15S)-epoxy-(5Z,8Z,11Z)-icosatrienoic acid monarch-merged.owl owl:Class CHEBI:71713 biolink:NamedThing phosphatidylethanolamine 32:2 monarch-merged.owl owl:Class CHEBI:75690 biolink:NamedThing (8R)-hydroxy-(11R,12R)-epoxyicosa-(5Z,9E,14Z)-trienoic acid monarch-merged.owl owl:Class CHEBI:75692 biolink:NamedThing (8R)-hydroxy-(11S,12S)-epoxyicosa-(5Z,9E,14Z)-trienoic acid monarch-merged.owl owl:Class CHEBI:75696 biolink:NamedThing (10R)-hydroxy-(11S,12S)-epoxyicosa-(5Z,8Z,14Z)-trienoic acid monarch-merged.owl owl:Class CHEBI:75700 biolink:NamedThing (13R)-hydroxy-(14S,15S)-epoxyicosa-(5Z,8Z,11Z)-trienoic acid monarch-merged.owl owl:Class CHEBI:75822 biolink:NamedThing (8S,9S)-epoxy-(10R)-hydroxyicosa-(5Z,11Z,14Z)-trienoic acid monarch-merged.owl owl:Class CHEBI:17343 biolink:NamedThing cis-3,4-leucopelargonidin monarch-merged.owl owl:Class CHEBI:138177 biolink:NamedThing 4-unsubstituted 3-hydroxyanthocyanidin betaine monarch-merged.owl owl:Class CHEBI:48039 biolink:NamedThing dihydroflavonols monarch-merged.owl owl:Class CHEBI:138193 biolink:NamedThing (2R,5S)-2,5-diaminohexanoic acid monarch-merged.owl owl:Class CHEBI:35987 biolink:NamedThing diamino acid Any amino acid carrying two amino groups. monarch-merged.owl chebi_ontology owl:Class CHEBI:138194 biolink:NamedThing 1,2-dihexanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:138195 biolink:NamedThing 1,2-diheptanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:138197 biolink:NamedThing 1-hexanoyl-2-heptanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:138198 biolink:NamedThing 1-heptanoyl-2-hexanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:138200 biolink:NamedThing 1-heptanoyl-2-hexadecanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:72999 biolink:NamedThing 1,2-dihexadecanoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:74667 biolink:NamedThing 1-oleoyl-2-palmitoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75026 biolink:NamedThing 1-stearoyl-2-palmitoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:75294 biolink:NamedThing 1-icosanoyl-2-palmitoyl-sn-glycero-3-phosphocholine monarch-merged.owl owl:Class CHEBI:138208 biolink:NamedThing carotenoid biosynthesis inhibitor monarch-merged.owl owl:Class CHEBI:76932 biolink:NamedThing pathway