id category name description provided_by iri knowledge_source object predicate relation same_as subject IAO:0000078 biolink:NamedThing curation status specification The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000078 IAO:0000409 biolink:NamedThing denotator type A denotator type indicates how a term should be interpreted from an ontological perspective. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000409 IAO:8000020 biolink:NamedThing EL++ ontology module OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000020 IAO:8000019 biolink:NamedThing ontology module subsetted by OWL profile OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000019 IAO:8000011 biolink:NamedThing external import ontology module An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000011 IAO:8000012 biolink:NamedThing species subset ontology module A subset ontology that is crafted to either include or exclude a taxonomic grouping of species. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000012 IAO:0000411 biolink:NamedThing is denotator type Relates an class defined in an ontology, to the type of it's denotator OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000411 IAO:8000013 biolink:NamedThing reasoned ontology module An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000013 IAO:8000014 biolink:NamedThing generated ontology module An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000014 IAO:0000412 biolink:NamedThing imported from For external terms/classes, the ontology from which the term was imported OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000412 IAO:8000015 biolink:NamedThing template generated ontology module An ontology module that is automatically generated from a template specification and fillers for slots in that template. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000015 IAO:0000410 biolink:NamedThing universal OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000410 IAO:8000016 biolink:NamedThing taxonomic bridge ontology module OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000016 IAO:8000017 biolink:NamedThing ontology module subsetted by expressivity OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000017 IAO:8000018 biolink:NamedThing obo basic subset ontology module A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000018 IAO:0100001 biolink:NamedThing term replaced by Use on obsolete terms, relating the term to another term that can be used as a substitute OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0100001 IAO:8000010 biolink:NamedThing exclusion subset ontology module A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000010 IAO:8000008 biolink:NamedThing analysis subset ontology module An ontology module that is intended for usage in analysis or discovery applications. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000008 IAO:8000009 biolink:NamedThing single layer subset ontology module A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000009 IAO:0000424 biolink:NamedThing expand expression to A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000424 IAO:8000000 biolink:NamedThing ontology module OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000000 IAO:8000001 biolink:NamedThing base ontology module An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000001 IAO:0000425 biolink:NamedThing expand assertion to A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000425 IAO:8000002 biolink:NamedThing editors ontology module An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000002 IAO:0000423 biolink:NamedThing to be replaced with external ontology term Terms with this status should eventually replaced with a term from another ontology. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000423 IAO:8000003 biolink:NamedThing main release ontology module An ontology module that is intended to be the primary release product and the one consumed by the majority of tools. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000003 IAO:8000004 biolink:NamedThing bridge ontology module An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000004 IAO:0000420 biolink:NamedThing defined class A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000420 IAO:0000421 biolink:NamedThing named class expression A named class expression is a logical expression that is given a name. The name can be used in place of the expression. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000421 IAO:8000005 biolink:NamedThing import ontology module A subset ontology module that is intended to be imported from another ontology. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000005 IAO:8000006 biolink:NamedThing subset ontology module An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000006 IAO:8000007 biolink:NamedThing curation subset ontology module A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_8000007 OGMS:0000120 biolink:NamedThing complete remission A remission which is characterized by a prolonged lack of all manifestations of a disease OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000120 OGMS:0000121 biolink:NamedThing partial remission A remission which is characterized by a prolonged lack of some manifestations of a disease OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000121 OGMS:0000115 biolink:NamedThing physical therapy procedure A therapeutic procedure that uses physical conditioning OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000115 OGMS:0000116 biolink:NamedThing radiation therapy procedure A therapeutic procedure that uses radiation. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000116 OGMS:0000117 biolink:NamedThing asymptomatic A disease stage characterized by the lack of symptoms associated with a given disease OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000117 IAO:0000030 biolink:NamedThing information content entity A generically dependent continuant that is about some thing. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000030 OGMS:0000118 biolink:NamedThing onset A disease stage that marks the beginning of a disease OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000118 OGMS:0000111 biolink:NamedThing prophylactic treatment A treatment whose completion is hypothesized by a health care provider to prevent the signs and symptoms of a disorder or pathological process. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000111 OGMS:0000112 biolink:NamedThing therapeutic procedure A treatment whose completion is hypothesized by a health care provider to eliminate a disorder or to alleviate the signs and symptoms of a disorder or pathological process. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000112 OGMS:0000113 biolink:NamedThing chemotherapy procedure A therapeutic procedure that uses synthetic or naturally-occurring chemicals OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000113 OGMS:0000114 biolink:NamedThing immunotherapy procedure A therapeutic procedure that uses immune system derived entities. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000114 IAO:0006011 biolink:NamedThing may be identical to A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0006011 IDO:0000630 biolink:NamedThing hospital-acquired infection An infection resulting from a transmission process that unfolds in a hospital. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IDO_0000630 IAO:0006012 biolink:NamedThing scheduled for obsoletion on or after Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0006012 OGMS:0000119 biolink:NamedThing acute onset A disease stage with a rapid unfolding of signs and symptoms OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000119 IAO:0000033 biolink:NamedThing directive information entity An information content entity whose concretizations indicate to their bearer how to realize them in a process. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000033 OGMS:0000130 biolink:NamedThing allergic disease process The process in which an allergic disease unfolds. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000130 OGMS:0000131 biolink:NamedThing cancer process The process in which cancer unfolds OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000131 OGMS:0000132 biolink:NamedThing autoimmune disease process The process in which an autoimmune disease unfolds. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000132 OGMS:0000126 biolink:NamedThing congenital infection A congenital disorder arising as a result of an infectious process OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000126 OGMS:0000127 biolink:NamedThing drug induced congenital malformation A congenital disorder arising as a result of a drug exposure causing an anatomical abnormality OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000127 OGMS:0000128 biolink:NamedThing congenital process A pathological bodily process that occurs in the fetus during fetal development OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000128 OGMS:0000129 biolink:NamedThing physical sign An abnormal material entity that is part of a patient and hypothesized to be clinically relevant. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000129 OGMS:0000122 biolink:NamedThing recovered from disease A quality in which complete clearance of the disorder is attained; however, physiological 'memory' may persist OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000122 OGMS:0000123 biolink:NamedThing clinical data item A data item that is about a patient and is the specified output of a health care process assay or diagnostic process OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000123 OGMS:0000124 biolink:NamedThing routine health care encounter A health care encounter that is regularly scheduled for the purpose of health monitoring. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000124 OGMS:0000125 biolink:NamedThing follow-up health care encounter A health care encounter that is scheduled for the purpose of assessing a known set of specific issues OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000125 IAO:0000600 biolink:NamedThing elucidation OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000600 IAO:0000601 biolink:NamedThing has associated axiom(nl) OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000601 IDO:0000504 biolink:NamedThing infectious disorder An infection that is clinically abnormal. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IDO_0000504 IAO:0000602 biolink:NamedThing has associated axiom(fol) OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000602 IAO:0000603 biolink:NamedThing is allocated id range Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. "IAO_0020000-IAO_0020999" OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000603 OGMS:0000110 biolink:NamedThing health care process data transformation A health care process that produces output from input data OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000110 OGMS:0000104 biolink:NamedThing diagnostic process A health care process that involves the interpretation of a clinical picture from a given patient (input) and the assertion to the effect that the patient has a disease, disorder, or syndrome of a certain type, or none of these (output). OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000104 OGMS:0000105 biolink:NamedThing relapse A disease stage which is preceded by a remission and characterized by the return of a manifestation of a disease. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000105 OGMS:0000106 biolink:NamedThing remission A disease stage which is characterized by the lack of a manifestation of a disease OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000106 OGMS:0000107 biolink:NamedThing ancillary health care process A planned process that has the objective to support the objective of a health care process without directly involving the treatment, diagnosis, or prevention of disease or injury of a patient. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000107 OGMS:0000100 biolink:NamedThing inpatient encounter A health care encounter involving a patient who has been admitted to a health care facility and remains in a hospital facility for at least one night. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000100 OGMS:0000101 biolink:NamedThing emergency department encounter A health care encounter in which care is provided for undifferentiated and unscheduled patients with illnesses or injuries requiring immediate medical attention. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000101 OGMS:0000102 biolink:NamedThing injury A disorder that involves some structural damage that is immediately caused by a catastrophic external force. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000102 OGMS:0000103 biolink:NamedThing disease prophylaxis A planned process whose completion is hypothesized by a health care provider to reduce the risk of developing a disorder or the signs and symptoms of a disorder. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000103 OGMS:0000108 biolink:NamedThing health care process assay A health care process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000108 OGMS:0000109 biolink:NamedThing health care process biomaterial transformation A health care process which results in physical changes in a specified input material OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000109 IAO:0000228 biolink:NamedThing term imported OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000228 IAO:0000229 biolink:NamedThing term split OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000229 OGMS:0000040 biolink:NamedThing pathological physical configuration A configuration which deviates in some way from a canonical configuration for a particular organism. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000040 OGMS:0000038 biolink:NamedThing normal homeostasis Homeostasis of a type that is not clinically abnormal. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000038 OGMS:0000039 biolink:NamedThing configuration A quality which is an spatial arrangement or distribution of a(n) independent continuant(s) across a Three Dimensional Region. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000039 OGMS:0000034 biolink:NamedThing acquired genetic disease A disease whose physical basis is an acquired genetic disorder. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000034 OGMS:0000035 biolink:NamedThing constitutional genetic disease A disease whose physical basis is a constitutional genetic disorder. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000035 OGMS:0000037 biolink:NamedThing abnormal homeostasis Homeostasis that is clinically abnormal for an organism of a given type and age in a given environment. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000037 IAO:0000116 biolink:NamedThing editor note An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000116 IAO:0000117 biolink:NamedThing term editor Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000117 IAO:0000114 biolink:NamedThing has curation status OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000114 IAO:0000598 biolink:NamedThing has ID policy for Relating an ontology used to record id policy to the ontology namespace whose policy it manages OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000598 BFO:0000179 biolink:NamedThing BFO OWL specification label Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification. OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000179 IAO:0000599 biolink:NamedThing has ID prefix Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with "0"s to make this many digits) to construct an ID for a term being created. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000599 IAO:0000115 biolink:NamedThing definition The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000115 IAO:0000112 biolink:NamedThing example of usage A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000112 IAO:0000596 biolink:NamedThing has ID digit count Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix" annotation property value concatenated with an integer in the id range (left padded with "0"s to make this many digits) OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000596 IAO:0000233 biolink:NamedThing term tracker item An IRI or similar locator for a request or discussion of an ontology term. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000233 IAO:0000234 biolink:NamedThing ontology term requester The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000234 IAO:0000597 biolink:NamedThing has ID range allocated to Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000597 IAO:0000113 biolink:NamedThing in branch An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000113 IAO:0000231 biolink:NamedThing has obsolescence reason Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000231 IAO:0000232 biolink:NamedThing curator note An administrative note of use for a curator but of no use for a user OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000232 IAO:0000111 biolink:NamedThing editor preferred term The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English) OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000111 IAO:0000118 biolink:NamedThing alternative term An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent) OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000118 IAO:0000119 biolink:NamedThing definition source Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007 OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000119 OGMS:0000055 biolink:NamedThing clinical history taking A health care process in which a clinician elicits a description of previous sign and symptoms of disease from a patient or from a third party who is reporting on behalf of the patient. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000055 OBI:0000278 biolink:NamedThing disease stage a part of an occurrence of a disease process which is associated with position in the normal progression of the disease OGMS 2021-08-19 http://purl.obolibrary.org/obo/OBI_0000278 OGMS:0000050 biolink:NamedThing acquired genetic disorder A genetic disorder acquired by a single cell in an organism that leads to a population of cells within the organism bearing the disorder. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000050 OGMS:0000051 biolink:NamedThing constitutional genetic disorder A genetic disorder inherited during conception that is part of all cells in the organism. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000051 IAO:0000120 biolink:NamedThing metadata complete Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000120 OGMS:0000045 biolink:NamedThing disorder A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000045 OGMS:0000046 biolink:NamedThing epigenetic disorder A disorder whose etiology involves (1) a modification to the patient's genomic DNA which leads to alterations in the normal expression pattern of the genome, but is (2) not a change in the nucleotide sequence. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000046 OGMS:0000047 biolink:NamedThing genetic disorder A disorder whose etiology involves an abnormality in the nucleotide sequence of an organism's genome. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000047 IAO:0000125 biolink:NamedThing pending final vetting All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000125 IAO:0000123 biolink:NamedThing metadata incomplete Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000123 BFO:0000040 biolink:NamedThing material entity OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000040 IAO:0000002 biolink:NamedThing example to be eventually removed OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000002 IAO:0000124 biolink:NamedThing uncurated Nothing done yet beyond assigning a unique class ID and proposing a preferred term. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000124 IAO:0000121 biolink:NamedThing organizational term Term created to ease viewing/sort terms for development purpose, and will not be included in a release OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000121 IAO:0000122 biolink:NamedThing ready for release Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release." OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000122 OGMS:0000140 biolink:NamedThing infectious disease process The process in which an infectious disease unfolds OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000140 OGMS:0000141 biolink:NamedThing processual sign An abnormal processual entity occuring in a patient that is hypothesized to be clinically relevant. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000141 OGMS:0000020 biolink:NamedThing symptom A process experienced by the patient, which can only be experienced by the patient, that is hypothesized to be clinically relevant. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000020 OGMS:0000142 biolink:NamedThing qualitative sign An abnormal observable quality of a part of a patient that is hypothesized to be clinically relevant. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000142 OGMS:0000143 biolink:NamedThing transplantation A therapeutic procedure in which a body part is transferred into a organism OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000143 OGMS:0000022 biolink:NamedThing manifestation of a disease A quality of a patient that is (a) a deviation from clinical normality that exists in virtue of the realization of a disease and (b) is observable. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000022 OGMS:0000016 biolink:NamedThing clinical picture A representation of clinically significant bodily components, dispositions, and/or bodily processes of a human being that is inferred from relevant clinical findings. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000016 OGMS:0000137 biolink:NamedThing cancer progression stage II A cancer progression stage characterized by abnormal cellular growth that extends well beyond normal local tissue boundaries as a contiguous mass. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000137 OGMS:0000017 biolink:NamedThing image finding A representation of an image that supports an inference to an assertion about some quality of a patient. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000017 OGMS:0000138 biolink:NamedThing cancer progression stage III A cancer progression stage characterized by abnormal cellular growth that extends through normal local tissue boundaries as a contiguous mass and includes metastasis to one or more regional draining lymph nodes. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000138 OGMS:0000018 biolink:NamedThing laboratory finding A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000018 OGMS:0000139 biolink:NamedThing cancer progression stage IV A cancer progression stage characterized by abnormal cellular growth that extends through normal local tissue boundaries as a contiguous mass and includes metastasis to other distant tissues besides lymph nodes. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000139 OGMS:0000019 biolink:NamedThing preclinical finding A representation of a quality of a patient that is (1) recorded by a clinician because the quality is hypothesized to be of clinical significance and (2) refers to qualities obtaining in the patient prior to their becoming detectable in a clinical history taking or physical examination. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000019 OGMS:0000133 biolink:NamedThing progression stage OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000133 OGMS:0000134 biolink:NamedThing cancer progression stage OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000134 OGMS:0000014 biolink:NamedThing clinical finding A representation that is either the output of a clinical history taking or a physical examination or an image finding, or some combination thereof. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000014 OGMS:0000135 biolink:NamedThing cancer progression stage 0 A cancer progression stage characterized by abnormal cellular growth contained within normal tissue boundaries (e.g. carcinoma in situ). OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000135 OGMS:0000015 biolink:NamedThing clinical history A series of statements representing health-relevant qualities of a patient and of a patient's family. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000015 OGMS:0000136 biolink:NamedThing cancer progression stage I A cancer progression stage characterized by abnormal cellular growth that extends through normal local tissue boundaries as a contiguous mass. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000136 OGMS:0000030 biolink:NamedThing predisposition to disease of type X A disposition in an organism that constitutes an increased risk of the organism's subsequently developing the disease X. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000030 OGMS:0000031 biolink:NamedThing disease A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000031 OGMS:0000032 biolink:NamedThing homeostasis OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000032 OGMS:0000033 biolink:NamedThing genetic predisposition to disease of type X A predisposition to disease of type X whose physical basis is a constitutional abnormality in an organism's genome. This abnormality is the physical basis for the increased risk of acquiring the disease X. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000033 OGMS:0000027 biolink:NamedThing clinical phenotype A clinically abnormal phenotype. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000027 OGMS:0000148 biolink:NamedThing medication role A role borne by some material entity which can be delivered/administrated into some organism and the role is realized during a clinical treatment process aiming to treat symptoms, signs or diagnosed disease. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000148 BFO:0000180 biolink:NamedThing BFO CLIF specification label Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2 OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000180 OGMS:0000028 biolink:NamedThing disease phenotype A clinically abnormal phenotype that is characteristic of a single disease. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000028 OGMS:0000029 biolink:NamedThing vital sign A physical sign in which a non-zero value is standardly considered to be an indication that the organism is alive. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000029 BFO:0000182 biolink:NamedThing history OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000182 OGMS:0000144 biolink:NamedThing solid organ transplant A transplantation in which the body part is a non-fluid tissue OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000144 OGMS:0000023 biolink:NamedThing phenotype A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000023 OGMS:0000145 biolink:NamedThing transfusion A transplantation in which the body part is a bodily fluid OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000145 OGMS:0000024 biolink:NamedThing obsolete_sign OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000024 OGMS:0000025 biolink:NamedThing clinical manifestation of a disease A manifestation of a disease that is detectable in a clinical history taking or physical examination. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000025 OGMS:0000146 biolink:NamedThing tissue disorder A disorder of some macroscopic part of a tissue OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000146 OGMS:0000026 biolink:NamedThing preclinical manifestation of a disease A manifestation of a disease that exists prior to the time at which it would be detected in a clinical history taking or physical examination, if the patient were to present to a clinician. A realization of a disease that exists prior to its becoming detectable in a clinical history taking or physical examination. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000026 OGMS:0000147 biolink:NamedThing neoplasm A tissue disorder that has resulted from a dysregulation of cell proliferation leading to a net increase in mass OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000147 IAO:0000700 biolink:NamedThing has ontology root term Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000700 IAO:0000027 biolink:NamedThing data item An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000027 BFO:0000019 biolink:NamedThing quality OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000019 OGMS:0000080 biolink:NamedThing pathological transformation A pathological bodily process in which a canonical anatomical structure becomes a pathological anatomical structure. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000080 BFO:0000015 biolink:NamedThing process p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000015 IAO:0000428 biolink:NamedThing requires discussion A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000428 BFO:0000016 biolink:NamedThing disposition OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000016 BFO:0000017 biolink:NamedThing realizable entity OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000017 IAO:0000426 biolink:NamedThing first order logic expression OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000426 BFO:0000018 biolink:NamedThing zero-dimensional spatial region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000018 IAO:0000427 biolink:NamedThing antisymmetric property Use boolean value xsd:true to indicate that the property is an antisymmetric property OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000427 OGMS:0000085 biolink:NamedThing pain A bodily process in an organism S involving two integrated levels: (a) activation of the nociceptive system and associated emotion generating brain components of S, and (b) a simultaneous aversive sensory and emotional experience on the part of S, where (b) is phenomenologically similar to the sort of aversive experience involved in pain with concordant tissue damage. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000085 OGMS:0000086 biolink:NamedThing syndrome A pattern of signs and symptoms that typically co-occur. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000086 OGMS:0000087 biolink:NamedThing extended organism An object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000087 OGMS:0000088 biolink:NamedThing patient symptom report A communication from a patient about something they perceive as being abnormal about their body or life. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000088 OGMS:0000081 biolink:NamedThing pathological derivation A pathological bodily process in which matter is reorganized in such a way as to give rise to new pathological formations which take the place of entities existing earlier. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000081 OGMS:0000082 biolink:NamedThing pathological invasion TODO: Define. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000082 OGMS:0000083 biolink:NamedThing physical examination finding TODO: Define. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000083 OGMS:0000084 biolink:NamedThing organism population An aggregate of organisms of the same type. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000084 OGMS:0000078 biolink:NamedThing pathological anatomical structure An anatomical structure (FMA) is pathological whenever (1) it has come into being as a result of changes in some pre-existing canonical anatomical structure, (2) through processes other than the expression of the normal complement of genes of an organism of the given type, and (3) is predisposed to have health-related consequences for the organism in question manifested by symptoms and signs. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000078 OGMS:0000079 biolink:NamedThing portion of pathological body substance TODO: Define, relate to disorder, and place in the OGMS hierarchy. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000079 BFO:0000011 biolink:NamedThing spatiotemporal region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000011 BFO:0000008 biolink:NamedThing temporal region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000008 BFO:0000009 biolink:NamedThing two-dimensional spatial region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000009 OGMS:0000090 biolink:NamedThing treatment A planned process whose completion is hypothesized by a health care provider to eliminate, prevent, or alleviate a disorder, the signs and symptoms of a disorder, or a pathological process OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000090 OGMS:0000091 biolink:NamedThing convalescence A processual entity during which a patient participating in a disease course gradually returns to participating in a canonical life course. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000091 BFO:0000004 biolink:NamedThing independent continuant b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000004 BFO:0000006 biolink:NamedThing spatial region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000006 OGMS:0000096 biolink:NamedThing health care process A planned process with the objective to improve the health status of a patient that directly involves the treatment, diagnosis, or prevention of disease or injury of a patient OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000096 OGMS:0000097 biolink:NamedThing health care encounter A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role. The health care provider role and patient are realized during the health care encounter OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000097 OGMS:0000098 biolink:NamedThing hospitalization TODO OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000098 OGMS:0000099 biolink:NamedThing outpatient encounter TODO OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000099 OGMS:0000092 biolink:NamedThing life course A process which has as parts all the processes in which a given organism is participant. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000092 OGMS:0000093 biolink:NamedThing prognosis A hypothesis about some future part of a disease course. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000093 IAO:0010000 biolink:NamedThing has axiom label OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0010000 OGMS:0000094 biolink:NamedThing acute disease course A disease course with an acute onset OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000094 OGMS:0000095 biolink:NamedThing inflammatory process A bodily process caused by some disorder that results in recruitment of leukocytes into a localized tissue site, typically causing localized pain and swelling. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000095 OGMS:0000089 biolink:NamedThing congenital disorder A structurally anomalous part of an organism acquired during fetal development and present at birth (but not necessarily hereditary) which is hypothesized to be harmful for the organism. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000089 BFO:0000001 biolink:NamedThing entity OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000001 BFO:0000002 biolink:NamedThing continuant OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000002 IDO:0000586 biolink:NamedThing infection A part of an extended organism that itself has as part a population of one or more infectious agents and that (1) exists as a result of processes initiated by members of the infectious agent population and is (2) clinically abnormal in virtue of the presence of this infectious agent population, or (3) has a disposition to bring clinical abnormality to immunocompetent organisms of the same Species as the host (the organism corresponding to the extended organism) through transmission of a member or offspring of a member of the infectious agent population. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IDO_0000586 BFO:0000003 biolink:NamedThing occurrent OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000003 BFO:0000038 biolink:NamedThing one-dimensional temporal region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000038 OGMS:0000063 biolink:NamedThing disease course The totality of all processes through which a given disease instance is realized. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000063 OGMS:0000064 biolink:NamedThing chronic disease course A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, fall within abnormal homeostatic range. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000064 OGMS:0000065 biolink:NamedThing progressive disease course A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, involve an increasing deviation from homeostasis. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000065 OGMS:0000066 biolink:NamedThing transient disease course A disease course that terminates in a return to normal homeostasis. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000066 OGMS:0000060 biolink:NamedThing bodily process OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000060 OGMS:0000061 biolink:NamedThing pathological bodily process A bodily process that is clinically abnormal. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000061 OGMS:0000056 biolink:NamedThing clinical laboratory test A measurement assay that has as input a patient-derived specimen and as output a data item that is about a quality of the specimen. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000056 OGMS:0000057 biolink:NamedThing physical examination A sequence of acts of observing and measuring qualities of a patient performed by a clinician; measurements may occur with and without elicitation. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000057 OGMS:0000059 biolink:NamedThing etiological process A process in an organism that leads to a subsequent disorder. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000059 BFO:0000034 biolink:NamedThing function OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000034 BFO:0000035 biolink:NamedThing process boundary p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]) OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000035 BFO:0000030 biolink:NamedThing object OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000030 BFO:0000031 biolink:NamedThing generically dependent continuant b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000031 BFO:0000147 biolink:NamedThing zero-dimensional continuant fiat boundary OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000147 BFO:0000026 biolink:NamedThing one-dimensional spatial region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000026 BFO:0000027 biolink:NamedThing object aggregate OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000027 BFO:0000148 biolink:NamedThing zero-dimensional temporal region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000148 OBI:0000011 biolink:NamedThing planned process A process that realizes a plan which is the concretization of a plan specification. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OBI_0000011 BFO:0000028 biolink:NamedThing three-dimensional spatial region OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000028 BFO:0000029 biolink:NamedThing site OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000029 OGMS:0000074 biolink:NamedThing normal value A value for a quality reported in a lab report and asserted by the testing lab or the kit manufacturer to be normal based on a statistical treatment of values from a reference population. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000074 OGMS:0000077 biolink:NamedThing pathological formation TODO: Define, relate to disorder, and place in the OGMS hierarchy. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000077 OGMS:0000070 biolink:NamedThing physical basis OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000070 OGMS:0000071 biolink:NamedThing realization OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000071 OGMS:0000073 biolink:NamedThing diagnosis The representation of a conclusion of a diagnostic process. OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000073 OGMS:0000067 biolink:NamedThing _undefined primitive term OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000067 OGMS:0000069 biolink:NamedThing clinically abnormal OGMS 2021-08-19 http://purl.obolibrary.org/obo/OGMS_0000069 IAO:0000226 biolink:NamedThing placeholder removed OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000226 IAO:0000589 biolink:NamedThing OBO foundry unique label An alternative name for a class or property which is unique across the OBO Foundry. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000589 IAO:0000227 biolink:NamedThing terms merged OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000227 BFO:0000144 biolink:NamedThing process profile b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]) OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000144 BFO:0000023 biolink:NamedThing role OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000023 BFO:0000145 biolink:NamedThing relational quality b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001]) OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000145 BFO:0000024 biolink:NamedThing fiat object part OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000024 IAO:0000224 biolink:NamedThing obsolete_core Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000224 IAO:0000103 biolink:NamedThing failed exploratory term The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000103 BFO:0000146 biolink:NamedThing two-dimensional continuant fiat boundary OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000146 IAO:0000225 biolink:NamedThing obsolescence reason specification The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000225 IAO:0000102 biolink:NamedThing data about an ontology part Data about an ontology part is a data item about a part of an ontology, for example a term OGMS 2021-08-19 http://purl.obolibrary.org/obo/IAO_0000102 BFO:0000140 biolink:NamedThing continuant fiat boundary b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001]) OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000140 BFO:0000020 biolink:NamedThing specifically dependent continuant b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000020 BFO:0000141 biolink:NamedThing immaterial entity OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000141 BFO:0000142 biolink:NamedThing one-dimensional continuant fiat boundary OGMS 2021-08-19 http://purl.obolibrary.org/obo/BFO_0000142 owl:Thing biolink:NamedThing OGMS 2021-08-19