DROP TABLE IF EXISTS `info_type`; /*!40101 SET @saved_cs_client = @@character_set_client */; /*!40101 SET character_set_client = utf8 */; CREATE TABLE `info_type` ( `name` varchar(255) COLLATE utf8_unicode_ci NOT NULL, `data_type` varchar(7) COLLATE utf8_unicode_ci NOT NULL, `unit` varchar(255) COLLATE utf8_unicode_ci DEFAULT NULL, `description` text COLLATE utf8_unicode_ci, PRIMARY KEY (`name`), UNIQUE KEY `info_type_idx1` (`name`,`data_type`), UNIQUE KEY `expression_type_idx1` (`name`,`data_type`), KEY `fk_info_type__data_type` (`data_type`), CONSTRAINT `fk_info_type__data_type` FOREIGN KEY (`data_type`) REFERENCES `data_type` (`name`) ) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_unicode_ci; /*!40101 SET character_set_client = @saved_cs_client */; -- -- Dumping data for table `info_type` -- LOCK TABLES `info_type` WRITE; /*!40000 ALTER TABLE `info_type` DISABLE KEYS */; INSERT INTO `info_type` VALUES ('Ab Count','Integer',NULL,'Antibody count from antibodypedia.com'),('Antibodypedia.com URL','String',NULL,'Antibodypedia.com detail page URL for a given protein.'),('ChEMBL Activity Count','Integer',NULL,'Number of filtered bioactivities in ChEMBL better than 1uM (10uM for Ion Channels)'),('ChEMBL First Reference Year','Integer',NULL,'The year of the oldest bioactivity reference this target has in ChEMBL. Note that this is derived from ChEMBL activities as filtered for TCRD purposes.'),('ChEMBL Selective Compound','String',NULL,'2 log selective compound on this target. Value is ChEMBL ID and SMILES joined with a pipe character.'),('Drugable Epigenome Class','String',NULL,'Drugable Epigenome Class/Domain from Nature Reviews Drug Discovery 11, 384-400 (May 2012)'),('DrugDB Count','Integer',NULL,'Number of drugs in DrugDB with with activity better than 1uM (10uM for Ion Channels)'),('EBI Total Patent Count','Integer',NULL,'Total count of all patents mentioning this protein according to EBI text mining'),('EBI Total Patent Count (Relevant)','Integer',NULL,'Total count of all relevant patents mentioning this protein according to EBI text mining'),('Experimental MF/BP Leaf Term GOA','String',NULL,'Indicates that a target is annotated with one or more GO MF/BP leaf term with Experimental Evidence code. Value is a concatenation of all GO terms/names/evidences.'),('GTEx Tissue Specificity Index','Number',NULL,'Tau as defined in Yanai, I. et. al., Bioinformatics 21(5): 650-659 (2005) calculated on GTEx data.'),('Has MLP Assay','Boolean',NULL,'Indicates that a protein is used in at least one PubChem MLP assay. Details are in mlp_assay_info tabel.'),('HPA Tissue Specificity Index','Number',NULL,'Tau as defined in Yanai, I. et. al., Bioinformatics 21(5): 650-659 (2005) calculated on HPA Protein data.'),('HPM Gene Tissue Specificity Index','Number',NULL,'Tau as defined in Yanai, I. et. al., Bioinformatics 21(5): 650-659 (2005) calculated on HPM Gene data.'),('HPM Protein Tissue Specificity Index','Number',NULL,'Tau as defined in Yanai, I. et. al., Bioinformatics 21(5): 650-659 (2005) calculated on HPM Protein data.'),('IMPC Clones','String',NULL,'#Clones from IMPC Spreadsheet'),('IMPC Status','String',NULL,'Best Status from IMPC Spreadsheet'),('Is Transcription Factor','Boolean',NULL,'Target is a transcription factor according to http://www.bioguo.org/AnimalTFDB'),('JensenLab COMPARTMENT Prediction Plasma membrane','String',NULL,'Prediction method and value (conf 2 or 3 only) that the protein is Plasma membrane from JensenLab COMPARTMENTS resouce'),('JensenLab PubMed Score','Number',NULL,'PubMed paper count from textmining done in group of Lars-Juhl Jensen.'),('MAb Count','Integer',NULL,'Monoclonal Antibody count from antibodypedia.com'),('NCBI Gene PubMed Count','Integer',NULL,'Number of PubMed references for target and all its aliases'),('NCBI Gene Summary','String',NULL,'Gene summary statement from NCBI Gene database'),('PubTator Score','Number',NULL,'PubMed paper count from PubTator data run through Lars Jensen\'s counting proceedure'),('TIN-X Novelty Score','Number',NULL,'TIN-X novelty score from Cristian Bologa.'),('TM Count','Integer',NULL,'Number of transmembrane helices according to Survey of the Human Transmembrane Proteome (https://modbase.compbio.ucsf.edu/projects/membrane/). At least 2 are required to be in their list.'),('TMHMM Prediction','String',NULL,'Short output from TMHMM run locally on protein sequences.'),('UniProt Function','String',NULL,'Funtion comment from UniProt'); /*!40000 ALTER TABLE `info_type` ENABLE KEYS */; UNLOCK TABLES;